8000 Update to forked repo by CeeThinwa · Pull Request #2 · CeeThinwa/scikit-learn · GitHub
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Merged
merged 904 commits into from
Feb 6, 2021
Merged

Update to forked repo #2

merged 904 commits into from
Feb 6, 2021

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What does this implement/fix? Explain your changes.

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glemaitre and others added 30 commits November 1, 2020 10:00
@glemaitre @bsipocz @alfaro96
EHN Add parameter as_frame to fetch_20newsgroups_vectorized (#18262)
15cb869 
* Adding as_frame kwarg to fetch_20newsgroups_vectorized

* Using SparseArray to store the data

* Adding changelog

* Adding pandas version dependency, and more tests

* DOC: rephrasing changelog [skip ci]

* iter

* fix

* update whats new

* apply some suggestions

* Apply suggestions from code review

Co-authored-by: Juan Carlos Alfaro Jiménez <JuanCarlos.Alfaro@uclm.es>

* review

* iter

* iter

* improve test

* TST handle the case that the pickle file is outdated

* iter

* skip if no network

* use fixture available

* address adrin comments

Co-authored-by: Brigitta Sipocz <bsipocz@gmail.com>
Co-authored-by: Juan Carlos Alfaro Jiménez <JuanCarlos.Alfaro@uclm.es>
@NicolasHug
DOC don't suggest contributors to add type annotations (#18718)
0ce49f4
@NicolasHug
DOC minor update to make_classification about flip_y (#18720)
5309179
@thomasjpfan
DOC Shows kwargs in API signature (#18576)
7da9153
@glemaitre
FIX solved legend issue in PDP (#18713)
60945b4
@glemaitre
FIX deprecate calibrators_ in _CalibratedClassifier (#18714)
9358a94
@ogrisel
flake8: move E402 ignore rule to setup.cfg for examples folder (#18724)
a2728ac
@rickiepark @glemaitre
FIX Add l1_ratio to set regularization with elasticnet penalty in Per…
4880f1c 
…ceptron (#18622)

Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
@ogrisel
MAINT update flake8 config on circleci linter (#18731)
b25d64f
@glemaitre
[arm64] MNT skip docstring check in tutorial for ARM64 (#18728)
4876688
@lorentzenchr
[MRG] ENH add Poisson splitting criterion for single trees (#17386)
de59efe
@ogrisel
MAINT Try to fix [icc-build] in travis (+doc) (#18730)
7b3e2c0
@glemaitre
FIX make sure that ICE do not have labels (#18725)
2631a45
@nils-werner
DOC Tomography L1 reconstruction example: use dot product operator (#…
d619d96 
…18722)
@lorentzenchr
DOC remove poisson criterion from ExtraTreeRegressor (#18734)
1ee4561
@thomasjpfan
ENH Adds n_feature_in_ checking to tree (#18726)
4d7e611
@lucyleeow
BUG Fix numpy version for _take_along_axis in fixes.py (#18745)
c9543e1
@cmarmo
FIX validate input array-like in KDTree and BallTree (#18691)
61beb3b
DOC Fix doc of fit_predict in neighbors/_lof.py (#18754)
51acc9d
@ogrisel @glemaitre
FIX numerical rounding issue causing test_poisson_zero_nodes to fail …
f0e9d29 
…at random (#18737)

Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
@marenwestermann
DOC for n_nonzero_coefs_ attribute in OrthogonalMatchingPursuit (#18756)
b5d63e3
@declo32
DOC typo in linear_model.rst (#18770)
7386948
@cmarmo
DOC Fix changelog rendering and undefined label sphinx warning (#18772)
< 10000 batch-deferred-content class="d-inline-block" data-url="/commits/badges">
9a0bc63
@alfaro96
MNT Use cibuildwheel to build the wheels with [cd build] (#17921)
cd60a35
@alfaro96
FIX Trigger CD build on master branch [cd build] (#18774)
505f3d0
@martinagvilas
DOC Add grid search stats example (#17432)
5e85a65
@thomasjpfan
MNT Catches scipy 1.3.0 for using deprecated tostring method (#18755)
8aa6f07
@ogrisel
FIX make test_sag_regressor more robust [cd build] (#18777)
95a3005
@ashkush
DOC fix typo in _bayesian_mixture.py (#18766)
7db70d5
@lucyleeow @ogrisel
DOC Improve multiclass calibration example (#18763)
3a50939 
Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
efiegel and others added 28 commits January 28, 2021 16:07
@efiegel @glemaitre
TST add binary and multiclass test for scorers (#18904)
ff2e52d 
Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
@zitorelova
DOC Add log-link to Gamma and Poisson Regressor (#19287)
96dfe1e
@venkyyuvy
removing incrementalPCA example in basePCA (#19298)
776f691
@thomasjpfan @ogrisel
API Removes tol=None option from HistGradientBoosting* (#19296)
b943324 
* API Removes tol=None option from HistGradient*

* Pass tol=0.0 instead of tol=None in early stopping tests

Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
@thomasjpfan
API Removes the use of fit_ and partial_fit_ in Birch (#19297)
aa1e69a 
* API Removes the use of fit_ and partial_fit_ in Birch

* DOC Adds whats new

* ENH Adjust names

* CLN Uses a verbose name
@thomasjpfan @ogrisel
CLN Fixes PendingDeprecationWarning in CountVectorizer (#19299)
863c552 
Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
@thomasjpfan
TST Ignores PendingDeprecationWarning in tests (#19301)
38e6022
@kno10 @ogrisel
Simplify computation of radius to match BIRCH more closely (#19251)
88be2ab 
Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
@thomasjpfan
TST Filter out warning for pyamg using deprecated behavior (#19312)
71f7085
@thomasjpfan
ENH Adds n_features_in_ checking in cross_decomposition (#18741)
96a96f1
@thomasjpfan
CI Check only title for regex labeling (#19303)
3325c23
@agamemnonc
DOC Balanced accuracy score adjusted doc fix (#19309)
462694a
@thomasjpfan
CI Skips test in loading_other_datasets.rst based on env flag (#19295)
4408a25
@EdwinWenink @NicolasHug
DOC fix ungrammatical sentence in doc of SelectFromModel (#19240)
0cc91e7 
Co-authored-by: Nicolas Hug <contact@nicolas-hug.com>
@m7142yosuke
FIX Don't overwrite input sample_weight in LogisticRegression (#19182)
81a56bd
@glemaitre @thomasjpfan
EXA use pipeline in feature engineering example with RF,RT,GBDT (#18835)
69d6378 
Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
@ThuWangzw @thomasjpfan
FIX nan bug in BaseLabelPropagation (#19271)
cd06652 
Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
@thomasjpfan
DOC Updates css consistent admonition styling (#19249)
8815bce
@BaptBillard @jeremiedbb
DOC Remove algorithm flag for PLS regression (#19204)
07e1a6b 
Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com>
@bmalezieux @jeremiedbb @rth
Dictionary Learning: transform_alpha default equal to alpha (#19159)
66560d6 
Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com>
Co-authored-by: Roman Yurchak <rth.yurchak@gmail.com>
@glemaitre @thomasjpfan @rth
DOC use diagram and simplify pipeline in stacking example (#18830)
94b81ab 
Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
Co-authored-by: Roman Yurchak <rth.yurchak@gmail.com>
@ogrisel
Reduce parallelism for [cd build] and [arm64] on travis (#19330)
50d3aaa
@brcharron
FIX Ensure determinism of SVD init in dict_learning (#18433)
4fd851c
@jeremiedbb
CI Update ICC install commands (#19329)
d831bab
@jeremiedbb
Fix min_pos when all negative + speed up (#19328)
673f625
@jjerphan
MAINT Use check_finite=False in sklearn.manifold (#18886)
74a37de
@Vlasovets
DOC correct behavior of precompute with sparse input (#19348)
819c43c
@thomasjpfan
ENH Checks n_features_in_ in discriminant_analysis (#19342)
23d8761
@CeeThinwa CeeThinwa merged commit bdb189f into CeeThinwa:main Feb 6, 2021
CeeThinwa pushed a commit that referenced this pull request Feb 6, 2021
@dmohns @jkarnows @jucor
[MRG] Add Detection Error Tradeoff (DET) curve classification metrics (…
41d648e 
…scikit-learn#10591)

* Initial add DET curve to classification metrics

* Add DET to exports

* Fix DET-curve doctest errors

- Sample snippet in  model_evaluation documentation was outdated.

* Clarify wording in DET-curve computation

- Align to the wording of ranking module to make it consistent.
- Add correct describtion of input and outputs.
- Update and fix non-existent links

* Beautify DET curve documentation source

- Limit line length to 80 characters.

* Expand DET curve documentation

- Add an example plot to show difference between ROC and DET curves.
- Expand Usage Note section with background information and properties
of DET curves.

* Update DET-curve documentation

- Fix typos and some grammar improvements.
- Use named references to avoid potential conflicts with other sections.
- Remove unneeded references and improved existing ones by using e.g.
using versioned links.

* Select relevant DET points using slice object

* Remove some dubiety from DET curve doc-string

* Add DET curve contributors

* Add tests for DET curves

* Streamline DET test by using parametrization

* Increase verbosity of DET curve error handling

- Explicitly sanity check input before computing a DET curve.
- Add test for perfect scores.
- Adapt indentation style to match the test module.

* Add reference for DET curves in invariance test

* Add automated invariance checks for DET curves

* Resolve merge artifacts

* Make doctest happy

* Fix whitespaces for doctest

* Revert unintended whitespace changes

* Revert unintended white space changes #2

* Fix typos and grammar

* Fix white space in doc

* Streamline test code

* Remove rebase artifacts

* Fix PR link in doc

* Fix test_ranking

* Fix rebase errors

* Fix import

* Bring back newlines

- Swallowed by copy/paste

* Remove uncited ref link

* Remove matplotlib deprecation warning

* Bring back hidden reference

* Add motivation to DET example

* Fix lint

* Add citation

* Use modern matplotlib API

Co-authored-by: Jeremy Karnowski <jeremy.karnowski@gmail.com>
Co-authored-by: Julien Cornebise <julien@cornebise.com>
Co-authored-by: Daniel Mohns <daniel.mohns@zenguard.org>
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