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Closed
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lesteve opened this issue Jun 15, 2022 · 44 comments · Fixed by #23664 or #23706
Closed
34 tasks done

Fix broken links in the documentation #23631

lesteve opened this issue Jun 15, 2022 · 44 comments · Fixed by #23664 or #23706
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Documentation Easy Well-defined and straightforward way to resolve good first issue Easy with clear instructions to resolve Meta-issue General issue associated to an identified list of tasks

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@lesteve
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lesteve commented Jun 15, 2022 •
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Below is the list of broken links in the documention from a make linkcheck run, together with the file the link appears in and the error message.

If you want to work on this, please:

  • do one Pull Request per link
  • add a comment in this issue saying which link you want to tackle so that different people can work on this issue in parallel
  • mention this issue (#23631) in your Pull Request description so that progress on this issue can more easily be tracked

Possible solutions for a broken link include:

  • find a replacement for the broken link. In case of links to articles, being able to link to a resource where the article is openly accessible (rather than behind a paywall) would be nice.
  • The link can be added to the linkcheck_ignore variable:

    scikit-learn/doc/conf.py

    Line 590 in 59473a9

    linkcheck_ignore = [
    . This is the only thing to do for example when:
    • the link is broken with no replacement (for example in testimonials some companies were acquired and their website does not exist)
    • the link works fine in a browser but is flagged as broken by make linkcheck tool. This may happen because some websites are trying to prevent bots to scrape the content of their website

Something that may be useful in the complicated cases is to search on the Internet Archive for the broken link. You may be able to look at the old content and it may help you to find an appropriate link replacement.

  • http://blanche.polytechnique.fr/~mallat/papiers/MallatPursuit93.pdf modules/generated/sklearn.linear_model.OrthogonalMatchingPursuit.rst 
    403 Client Error: Forbidden for url: http://blanche.polytechnique.fr/~mallat/papiers/MallatPursuit93.pdf
  • http://scgroup.hpclab.ceid.upatras.gr/faculty/stratis/Papers/HPCLAB020107.pdf modules/decomposition.rst 
    404 Client Error: Not Found for url: https://scgroup.hpclab.ceid.upatras.gr/faculty/stratis/Papers/HPCLAB020107.pdf
  • http://seat.massey.ac.nz/personal/s.r.marsland/Code/10/lle.py modules/generated/sklearn.datasets.make_swiss_roll.rst 
    403 Client Error: Forbidden for url: http://seat.massey.ac.nz/personal/s.r.marsland/Code/10/lle.py
  • DOC Link works fine, added it to linkcheck_ignore #23679 http://users.jyu.fi/~samiayr/pdf/ayramo_eurogen05.pdf modules/linear_model.rst 
    HTTPConnectionPool(host='users.jyu.fi', port=80): Max retries exceeded with url: /~samiayr/pdf/ayramo_eurogen05.pdf (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f02da35c340>, 'Connection to users.jyu.fi timed out. (connect timeout=10)'))
  • Fixes Robust Regression Example Link From UCLA issue #23631 #23660 http://www.ats.ucla.edu/stat/r/dae/rreg.htm modules/linear_model.rst 
    HTTPConnectionPool(host='www.ats.ucla.edu', port=80): Max retries exceeded with url: /stat/r/dae/rreg.htm (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f02dfd53a60>, 'Conn
8000
ection to www.ats.ucla.edu timed out. (connect timeout=10)'))
  • http://www.cl.cam.ac.uk/research/dtg/attarchive/facedatabase.html datasets/real_world.rst 
    404 Client Error: Not Found for url: https://www.cl.cam.ac.uk/research/dtg/attarchive/facedatabase.html
  • http://www.columbia.edu/~jwp2128/Papers/HoffmanBleiWangPaisley2013.pdf modules/decomposition.rst 
    404 Client Error: Not Found for url: http://www.columbia.edu/~jwp2128/Papers/HoffmanBleiWangPaisley2013.pdf
  • http://www.iucnredlist.org/apps/redlist/details/3038/0 auto_examples/neighbors/plot_species_kde.rst 
    404 Client Error: Not Found for url: https://www.iucnredlist.org/apps/redlist/details/3038/0
  • http://www.recognition.mccme.ru/pub/papers/SVM/sch99estimating.pdf modules/outlier_detection.rst 
    HTTPSConnectionPool(host='www.recognition.mccme.ru', port=443): Max retries exceeded with url: /pub/papers/SVM/sch99estimating.pdf (Caused by SSLError(SSLCertVerificationError("hostname 'www.recognition.mccme.ru' doesn't match 'kvant.ras.ru'")))
  • http://www.ttic.edu/sigml/symposium2011/papers/Moore+DeNero_Regularization.pdf modules/generated/sklearn.metrics.hinge_loss.rst 
    404 Client Error: Not Found for url: https://www.ttic.edu/sigml/symposium2011/papers/Moore+DeNero_Regularization.pdf
  • https://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.214.6398&rep=rep1&type=pdf modules/decomposition.rst 
    HTTPSConnectionPool(host='citeseerx.ist.psu.edu', port=443): Max retries exceeded with url: /viewdoc/download?doi=10.1.1.214.6398&rep=rep1&type=pdf (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1129)')))
  • https://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.227.1802&rep=rep1&type=pdf modules/kernel_approximation.rst 
    HTTPSConnectionPool(host='citeseerx.ist.psu.edu', port=443): Max retries exceeded with url: /viewdoc/download?doi=10.1.1.227.1802&rep=rep1&type=pdf (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1129)')))
  • https://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.392.8794&rep=rep1&type=pdf modules/linear_model.rst 
    HTTPSConnectionPool(host='citeseerx.ist.psu.edu', port=443): Max retries exceeded with url: /viewdoc/download?doi=10.1.1.392.8794&rep=rep1&type=pdf (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1129)')))
  • https://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.68.5164&rep=rep1&type=pdf modules/decomposition.rst 
    HTTPSConnectionPool(host='citeseerx.ist.psu.edu', port=443): Max retries exceeded with url: /viewdoc/download?doi=10.1.1.68.5164&rep=rep1&type=pdf (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1129)')))
  • https://dev.pandas.io/docs/development/maintaining.html developers/bug_triaging.rst 
    HTTPSConnectionPool(host='dev.pandas.io', port=443): Max retries exceeded with url: /docs/development/maintaining.html (Caused by SSLError(SSLCertVerificationError("hostname 'dev.pandas.io' doesn't match either of '*.numericable.fr', 'numericable.fr'")))
  • https://docs.scipy.org/doc/scipy/reference/dev/contributor/development_workflow.html developers/contributing.rst 
    404 Client Error: Not Found for url: https://docs.scipy.org/doc/scipy/reference/dev/contributor/development_workflow.html
  • DOC Fix scipy broken link #23697 https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.reciprocal.html modules/grid_search.rst 
    404 Client Error: Not Found for url: https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.reciprocal.html
  • [MRG] DOC added link to linkcheck_ignore #23739 https://doi.org/10.13140/RG.2.2.35280.02565 modules/generated/sklearn.cluster.spectral_clustering.rst 
    403 Client Error: Forbidden for url: https://www.researchgate.net/publication/354448354?channel=doi&linkId=6138e932a3a397270a8f1300&showFulltext=true
  • https://imageio.readthedocs.io/en/latest/userapi.html datasets/loading_other_datasets.rst 
    404 Client Error: Not Found for url: https://imageio.readthedocs.io/en/latest/userapi.html
  • https://newcircle.com/s/post/1152/scikit-learn_machine_learning_in_python presentations.rst 
    HTTPSConnectionPool(host='newcircle.com', port=443): Max retries exceeded with url: /s/post/1152/scikit-learn_machine_learning_in_python (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f02da1007c0>, 'Connection to newcircle.com timed out. (connect timeout=10)'))
  • https://pythonhosted.org/joblib/memory.html modules/compose.rst 
    404 Client Error: Not Found for url: https://pythonhosted.org/joblib/memory.html
  • https://staff.washington.edu/jakevdp presentations.rst 
    404 Client Error:  for url: https://staff.washington.edu/jakevdp
  • https://trevorhastie.github.io modules/generated/sklearn.metrics.d2_absolute_error_score.rst 
    404 Client Error: Not Found for url: https://trevorhastie.github.io/
  • https://users.soe.ucsc.edu/~optas/papers/jl.pdf modules/generated/sklearn.random_projection.SparseRandomProjection.rst 
    404 Client Error: Not Found for url: https://users.soe.ucsc.edu/~optas/papers/jl.pdf
  • https://www.cs.technion.ac.il/~mic/doc/skl-ip.pdf modules/generated/sklearn.decomposition.IncrementalPCA.rst 
    HTTPSConnectionPool(host='mic.net.technion.ac.il', port=443): Max retries exceeded with url: //doc/skl-ip.pdf (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1129)')))
  • https://www.datascience-paris-saclay.fr/ about.rst 
    HTTPSConnectionPool(host='www.datascience-paris-saclay.fr', port=443): Max retries exceeded with url: / (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1129)')))
  • https://www.frs-fnrs.be/-fnrs about.rst 
    404 Client Error: Not Found for url: https://www.frs-fnrs.be/fr/-fnrs
  • https://www.jstor.org/stable/2984099 modules/generated/sklearn.impute.IterativeImputer.rst 
    403 Client Error: Forbidden for url: https://www.jstor.org/stable/2984099
  • This link is working in a browser, it should be addded to linkcheck_ignore similarly to what was done in DOC added link to linkcheck_ignore #23737 https://www.microsoft.com/en-us/research/uploads/prod/2006/01/Bishop-Pattern-Recognition-and-Machine-Learning-2006.pdf modules/svm.rst 
    HTTPSConnectionPool(host='www.microsoft.com', port=443): Read timed out. (read timeout=10)
  • https://www.numfocus.org/support-numfocus.html about.rst 
    403 Client Error: Forbidden for url: https://www.flipcause.com/secure/cause_pdetails/MjM2OA==
  • https://www.researchgate.net/publication/233096619_A_Dendrite_Method_for_Cluster_Analysis modules/clustering.rst 
    403 Client Error: Forbidden for url: https://www.researchgate.net/publication/233096619_A_Dendrite_Method_for_Cluster_Analysis
  • This link is working in a browser, it should be addded to linkcheck_ignore similarly to what was done in DOC added link to linkcheck_ignore #23737 https://www.researchgate.net/publication/4974606_Hedonic_housing_prices_and_the_demand_for_clean_air modules/generated/sklearn.datasets.load_boston.rst 
    403 Client Error: Forbidden for url: https://www.researchgate.net/publication/4974606_Hedonic_housing_prices_and_the_demand_for_clean_air
  • https://www.sri.com/sites/default/files/publications/ransac-publication.pdf modules/generated/sklearn.linear_model.RANSACRegressor.rst 
    404 Client Error: Not Found for url: https://www.sri.com/sites/default/files/publications/ransac-publication.pdf
  • https://www.stat.washington.edu/research/reports/2000/tr371.pdf modules/cross_decomposition.rst 
    HTTPSConnectionPool(host='www.stat.washington.edu', port=443): Max retries exceeded with url: /research/reports/2000/tr371.pdf (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1129)')))
@lesteve lesteve added Easy Well-defined and straightforward way to resolve Documentation good first issue Easy with clear instructions to resolve labels Jun 15, 2022
@thinkcache
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thinkcache commented Jun 15, 2022 •
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I have started working on
http://www.ttic.edu/sigml/symposium2011/papers/Moore+DeNero_Regularization.pdf modules/generated/sklearn.metrics.hinge_loss.rst
404 Client Error: Not Found for url: https://www.ttic.edu/sigml/symposium2011/papers/Moore+DeNero_Regularization.pdf

PR ready
#23638

@thinkcache thinkcache mentioned this issue Jun 15, 2022
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@lesteve lesteve added the Meta-issue General issue associated to an identified list of tasks label Jun 15, 2022
@wildwoodwaltz
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I am starting to work on:
http://www.ats.ucla.edu/stat/r/dae/rreg.htm modules/linear_model.rst
HTTPConnectionPool(host='www.ats.ucla.edu', port=80): Max retries exceeded with url: /stat/r/dae/rreg.htm (Caused by ConnectTimeoutError(<urllib3.connection.HTTPConnection object at 0x7f02dfd53a60>, 'Connection to www.ats.ucla.edu timed out. (connect timeout=10)'))

@puhuk
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puhuk commented Jun 16, 2022

Let me take http://blanche.polytechnique.fr/~mallat/papiers/MallatPursuit93.pdf modules/generated/sklearn.linear_model.OrthogonalMatchingPursuit.rst

@puhuk puhuk mentioned this issue Jun 16, 2022
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@kanissh
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kanissh commented Jun 16, 2022 •
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Let me take:

http://www.columbia.edu/~jwp2128/Papers/HoffmanBleiWangPaisley2013.pdf modules/decomposition.rst

404 Client Error: Not Found for url: http://www.columbia.edu/~jwp2128/Papers/HoffmanBleiWangPaisley2013.pdf

PR ready: #23656

@kanissh kanissh mentioned this issue Jun 16, 2022
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@MotoBenny
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MotoBenny commented Jun 16, 2022 •
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Im working to resolve this link issue >> https://docs.scipy.org/doc/scipy/reference/dev/contributor/development_workflow.html developers/contributing.rst

PR opened for this link fix #23661

@wildwoodwaltz wildwoodwaltz mentioned this issue Jun 16, 2022
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@dlindqu3
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I am taking:
http://www.cl.cam.ac.uk/research/dtg/attarchive/facedatabase.html datasets/real_world.rst

404 Client Error: Not Found for url:
https://www.cl.cam.ac.uk/research/dtg/attarchive/

@bkhanal4351
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I am working on this:

https://www.numfocus.org/support-numfocus.html about.rst

403 Client Error: Forbidden for url: https://www.flipcause.com/secure/cause_pdetails/MjM2OA==)

@MotoBenny MotoBenny mentioned this issue Jun 16, 2022
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bkhanal4351 added a commit to bkhanal4351/scikit-learn that referenced this issue Jun 16, 2022
@bkhanal4351
fixed issue #scikit-learn#23631 donate link for numfocus.org
0d080f5
@dlindqu3 dlindqu3 mentioned this issue Jun 16, 2022
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@Jofleming
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I am working on:

https://pythonhosted.org/joblib/memory.html modules/compose.rst

404 Client Error: Not Found for url: https://pythonhosted.org/joblib/memory.html

@Rachel-Freeland
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Rachel-Freeland commented Jun 16, 2022 •
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Fixing this issue: http://www.iucnredlist.org/apps/redlist/details/3038/0

@Jofleming Jofleming mentioned this issue Jun 16, 2022
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@eden-brekke
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Working on Resolving this issue:
https://www.sri.com/sites/default/files/publications/ransac-publication.pdf modules/generated/sklearn.linear_model.RANSACRegressor.rst

404 Client Error: Not Found for url: https://www.sri.com/sites/default/files/publications/ransac-publication.pdf

@eden-brekke eden-brekke mentioned this issue Jun 16, 2022
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@Rachel-Freeland Rachel-Freeland mentioned this issue Jun 16, 2022
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@lesteve lesteve reopened this Jun 17, 2022
@kanissh
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kanissh commented Jun 17, 2022

Let me take:

https://staff.washington.edu/jakevdp presentations.rst

404 Client Error: for url: https://staff.washington.edu/jakevdp

@kanissh kanissh mentioned this issue Jun 17, 2022
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@Aravindh-Raju
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Working on:

https://users.soe.ucsc.edu/~optas/papers/jl.pdf
modules/generated/sklearn.random_projection.SparseRandomProjection.rst

404 Client Error: Not Found for url: https://users.soe.ucsc.edu/~optas/papers/jl.pdf

@Eschivo Eschivo mentioned this issue Jun 23, 2022
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@rprkh
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rprkh commented Jun 23, 2022

Working on:
https://www.researchgate.net/publication/233096619_A_Dendrite_Method_for_Cluster_Analysis modules/clustering.rst

403 Client Error: Forbidden for url: https://www.researchgate.net/publication/233096619_A_Dendrite_Method_for_Cluster_Analysis

@Eschivo
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Eschivo commented Jun 23, 2022

Fixing https://doi.org/10.13140/RG.2.2.35280.02565 modules/generated/sklearn.cluster.spectral_clustering.rst

403 Client Error: Forbidden for url: https://www.researchgate.net/publication/354448354?channel=doi&linkId=6138e932a3a397270a8f1300&showFulltext=true

@rprkh rprkh mentioned this issue Jun 23, 2022
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@Eschivo
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Eschivo commented Jun 23, 2022

Fixing https://doi.org/10.13140/RG.2.2.35280.02565 modules/generated/sklearn.cluster.spectral_clustering.rst

403 Client Error: Forbidden for url: https://www.researchgate.net/publication/354448354?channel=doi&linkId=6138e932a3a397270a8f1300&showFulltext=true

@lesteve regarding this I can't find the rst file: there's not generated folder under doc/modules, and also searching the entire sklearn folder I couldn't find any spectral_clustering.rst file. Where can I find it?

@lesteve
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lesteve commented Jun 23, 2022

@lesteve regarding this I can't find the rst file: there's not generated folder under doc/modules, and also searching the entire sklearn folder I couldn't find any spectral_clustering.rst file. Where can I find it?

modules/generated files are automatically generated files during the documentation build, you should look at the corresponding .py file: sklearn/cluster/spectral_clustering.py. The link is likely part of a docstring.

This link is working fine in a browser actually (at least for me but please double-check), you should add it to linkcheck_ignore as in #23737

@Eschivo Eschivo mentioned this issue Jun 23, 2022
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@bhoomikamadhukar
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I am starting to work on https://www.datascience-paris-saclay.fr about.rst
HTTPSConnectionPool(host='www.datascience-paris-saclay.fr', port=443): Max retries exceeded with url: / (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1129)')))

@ikeadeoyin
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Working on
https://doi.org/10.13140/RG.2.2.35280.02565

403 Client Error: Forbidden for url: https://www.researchgate.net/publication/354448354?channel=doi&linkId=6138e932a3a397270a8f1300&showFulltext=true

@kanissh kanissh mentioned this issue Jun 23, 2022
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@lesteve
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lesteve commented Jun 24, 2022

@ikeadeoyin there is already a PR on the link you mentioned: #23739. There are still a few more links available though 😉

@ikeadeoyin
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Alright @lesteve

I will be working on:

This link is working in a browser, it should be addded to linkcheck_ignore similarly to what was done in #23737 https://www.microsoft.com/en-us/research/uploads/prod/2006/01/Bishop-Pattern-Recognition-and-Machine-Learning-2006.pdf modules/svm.rst

HTTPSConnectionPool(host='www.microsoft.com', port=443): Read timed out. (read timeout=10)

@ikeadeoyin ikeadeoyin mentioned this issue Jun 24, 2022
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@AshutoshRudraksh
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@lesteve can I work on this one:

This link is working in a browser, it should be addded to linkcheck_ignore similarly to what was done in #23737 https://www.researchgate.net/publication/4974606_Hedonic_housing_prices_and_the_demand_for_clean_air modules/generated/sklearn.datasets.load_boston.rst

403 Client Error: Forbidden for url: https://www.researchgate.net/publication/4974606_Hedonic_housing_prices_and_the_demand_for_clean_air

@sampanacharya
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sampanacharya commented Jun 26, 2022 •
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https://www.jstor.org/stable/2984099
Link is working
I want to work on this one but the link provided is working fine

@kensac kensac mentioned this issue Jun 27, 2022
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@ikeadeoyin
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Working on
https://www.researchgate.net/publication/4974606_Hedonic_housing_prices_and_the_demand_for_clean_air modules/generated/sklearn.datasets.load_boston.rst

403 Client Error: Forbidden for url: https://www.researchgate.net/publication/4974606_Hedonic_housing_prices_and_the_demand_for_clean_air

@ikeadeoyin
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Working on
https://www.jstor.org/stable/2984099 modules/generated/sklearn.impute.IterativeImputer.rst

403 Client Error: Forbidden for url: https://www.jstor.org/stable/2984099

@ikeadeoyin ikeadeoyin mentioned this issue Jun 27, 2022
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@AkshatRastogi-1nC0re
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Let me work on http://www.recognition.mccme.ru/pub/papers/SVM/sch99estimating.pdf modules/outlier_detection.rst. I think I know how to fix it.

@Aravindh-Raju
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Let me work on http://www.recognition.mccme.ru/pub/papers/SVM/sch99estimating.pdf modules/outlier_detection.rst. I think I know how to fix it.

I think I've fixed this already. PR - Fix high-dimension distribution doc link #23698. But it wasn't marked as completed yet.

@lesteve
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lesteve commented Jun 28, 2022

I think I've fixed this already. #23698. But it wasn't marked as completed yet.

@Aravindh-Raju indeed good catch, I have ticked the box now.

@lesteve lesteve mentioned this issue Jun 28, 2022
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@lesteve
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lesteve commented Jun 28, 2022

All the links have been fixed and I opened a PR #23775 that should make make lincheck run without errors.

Thanks everyone who has been involved in this issue, we can now close it 🎉

@lesteve lesteve closed this as completed Jun 28, 2022
@lesteve lesteve mentioned this issue Nov 24, 2022
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@lesteve lesteve mentioned this issue Feb 19, 2025
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