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US20150119319A1 - Macrocyclic hepatitis c serine protease inhibitors - Google Patents

Macrocyclic hepatitis c serine protease inhibitors Download PDF

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Publication number
US20150119319A1
US20150119319A1 US14/588,805 US201514588805A US2015119319A1 US 20150119319 A1 US20150119319 A1 US 20150119319A1 US 201514588805 A US201514588805 A US 201514588805A US 2015119319 A1 US2015119319 A1 US 2015119319A1
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optionally substituted
alkyl
independently
alkenyl
alkynyl
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US14/588,805
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Keith F. McDaniel
Hui-Ju Chen
Ming Yeung
Timothy Middleton
Liangjun Lu
Kevin Kurtz
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AbbVie Inc
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AbbVie Inc
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Priority to US14/588,805 priority Critical patent/US20150119319A1/en
Publication of US20150119319A1 publication Critical patent/US20150119319A1/en
Assigned to ABBOTT LABORATORIES reassignment ABBOTT LABORATORIES ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: MIDDLETON, Timothy, YEUNG, MING C., KURTZ, KEVIN, CHEN, HUI-JU, LU, LIANGJUN, MCDANIEL, KEITH F.
Assigned to ABBVIE INC. reassignment ABBVIE INC. ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: ABBOTT LABORATORIES
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    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07D—HETEROCYCLIC COMPOUNDS
    • C07D487/00—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00
    • C07D487/02—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00 in which the condensed system contains two hetero rings
    • C07D487/04—Ortho-condensed systems
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K5/00—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/02—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing at least one abnormal peptide link
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12—Antivirals
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12—Antivirals
    • A61P31/14—Antivirals for RNA viruses
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P43/00—Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K5/00—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/08—Tripeptides
    • C07K5/0802—Tripeptides with the first amino acid being neutral
    • C07K5/0804—Tripeptides with the first amino acid being neutral and aliphatic
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K5/00—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/08—Tripeptides
    • C07K5/0827—Tripeptides containing heteroatoms different from O, S, or N
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00—Medicinal preparations containing peptides

Definitions

  • the present invention relates to novel fluorinated macrocycles having activity against the hepatitis C virus (HCV) and useful in the treatment of HCV infections. More particularly, the invention relates to macrocyclic compounds, compositions containing such compounds and methods for using the same, as well as processes for making such compounds.
  • HCV hepatitis C virus
  • HCV is the principal cause of non-A, non-B hepatitis and is an increasingly severe public health problem both in the developed and developing world. It is estimated that the virus infects over 200 million people worldwide, surpassing the number of individuals infected with the human immunodeficiency virus (HIV) by nearly five fold. HCV infected patients, due to the high percentage of individuals inflicted with chronic infections, are at an elevated risk of developing cirrhosis of the liver, subsequent hepatocellular carcinoma and terminal liver disease. HCV is the most prevalent cause of hepatocellular cancer and cause of patients requiring liver transplantations in the western world.
  • HIV human immunodeficiency virus
  • anti-HCV therapeutics There are considerable barriers to the development of anti-HCV therapeutics, which include, but are not limited to, the persistence of the virus, the genetic diversity of the virus during replication in the host, the high incident rate of the virus developing drug-resistant mutants, and the lack of reproducible infectious culture systems and small-animal models for HCV replication and pathogenesis. In a majority of cases, given the mild course of the infection and the complex biology of the liver, careful consideration must be given to antiviral drugs, which often have significant side effects.
  • the present invention relates to novel macrocyclic compounds and methods of treating a hepatitis C infection in a subject in need of such therapy with said macrocyclic compounds.
  • the compounds of the present invention interfere with the life cycle of the hepatitis C virus and are useful as antiviral agents.
  • the present invention further relates to pharmaceutical compositions comprising the compounds of the present invention, or pharmaceutically acceptable salts, esters or prodrugs thereof, in combination with a pharmaceutically acceptable carrier or excipient.
  • the invention provides a compound of formula I:
  • X is an optionally substituted carbocyclic, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl;
  • J is —C(O)—, —O—C(O)—, —C(O)O—, —N(R 3 )—C(O)—, —C(S)—, —C( ⁇ NR 4 )—, —S(O)—, or —S(O 2 )— or absent;
  • A is selected from the group consisting of the following:
  • E is -G-R 5 ;
  • each of R a , R b , R c , and R d are each independently H or halo, wherein at least two of R a , R b , R c , and R d are halo; and R b and R d are absent if is a double bond
  • each R 3 and R 4 is independently selected at each occurrence from the following: H, optionally substituted alkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; and optionally substituted carbocyclic;
  • L is absent or a C 2 -C 5 saturated or unsaturated chain, optionally containing one to three heteroatoms independently selected from O, N and S(O) q , wherein L is optionally substituted with one or more substituents selected from halogen, hydroxy, mercapto, amino, carboxy, nitro, oxo, phosphonoxy, phosphono, thioxo, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkenyl and C 2 -C 6 alkynyl, wherein each C 1 -C 6 alkyl, C 2 -C 6 alkenyl and C 2 -C 6 alkynyl, group is optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, carboxy, nitro, oxo, phosphonoxy, phosphono, thioxo, formyl and cyano;
  • j independently 0, 1, 2, 3, or 4;
  • k independently 0, 1, 2, or 3;
  • each m is independently 0, 1, or 2;
  • q is independently 0, 1, or 2.
  • the present invention also features the compounds of Formula I′, and pharmaceutically acceptable salts, esters, hydrates, solvates, polyrnorphs, or prodrugs thereof,
  • the invention provides a pharmaceutical composition
  • a pharmaceutical composition comprising a compound of any of the formulae herein (e.g., Formula I or I′), or a pharmaceutically acceptable salt, ester, or prodrug thereof, in combination with an excipient.
  • the invention provides a method of treating a viral infection in a subject, comprising administering to the subject a therapeutically effective amount of a compound of any of the formulae herein (e.g., Formula I or I′, or a pharmaceutically acceptable salt, ester or prodrug thereof; or a pharmaceutical composition comprising the same.
  • a compound of any of the formulae herein e.g., Formula I or I′, or a pharmaceutically acceptable salt, ester or prodrug thereof; or a pharmaceutical composition comprising the same.
  • the invention provides a compound of formula I:
  • X is an optionally substituted carbocyclic, optionally substituted heterocycyl, optionally substituted aryl, or optionally substituted heteroaryl;
  • J is —C(O)—, —O—C(O)—, —C(O)O—, —N(R 3 )—C(O)—, —C(S)—, —C( ⁇ NR 4 )—, N(R 3 )—, —S(O)—, or —S(O 2 )— or absent;
  • A is selected from the group consisting of the following:
  • E is -G-R 5 ;
  • each of R a , R b , R c , and R d are each independently H or halo, wherein at least two of R a , R b , R c , and R d are halo; and R b and R d are absent if is a double bond
  • each R 3 and R 4 is independently selected at each occurrence from the following: H, optionally substituted alkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; and optionally substituted carbocyclic;
  • L is absent or a C 2 -C 5 saturated or unsaturated chain, optionally containing one to three heteroatoms independently selected from O, N and S(O) q , wherein L is optionally substituted with one or more substituents selected from halogen, hydroxy, mercapto, amino, carboxy, nitro, oxo, phosphonoxy, phosphono, thioxo, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkenyl and C 2 -C 6 alkynyl, wherein each C 1 -C 6 alkyl, C 2 -C 6 alkenyl and C 2 -C 6 alkynyl, group is optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, carboxy, nitro, oxo, phosphonoxy, phosphono, thioxo, formyl and cyano;
  • j independently 0, 1, 2, 3, or 4;
  • k independently 0, 1, 2, or 3;
  • each m is independently 0, 1, or 2;
  • q is independently 0, 1, or 2.
  • the present invention also features the compounds of Formula I′, and pharmaceutically acceptable salts, esters, hydrates, solvates, polymorphs, or prodrugs thereof,
  • Z is O or OC(O); and ring X is cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, adamantyl, cyclooctyl, [3.3.0]bicyclooctanyl, [4.3.0]bicyclononanyl, [4.4.0]bicyclodecanyl, [2.2.2]bicyclooctanyl, fluorenyl, phenyl, naphthyl, indanyl, tetrahydronaphthyl, acridinyl, azocinyl, benzimidazolyl, benzofuranyl, benzothiofuranyl, benzothiophenyl, benzoxazolyl, benzthiazolyl, benztriazolyl, benztetraz benzisoxazolyl, benzisothiazolyl, benzimidazol
  • ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl.
  • ring X is
  • Y is N or —C(R′′)—
  • R′ is H, alkyl, alkenyl, alkynyl, carbocyclic, heterocyclyl, aryl, or heteroaryl, each of which may be optionally substituted;
  • each n is independently 0, 1, 2, 3, or 4;
  • each R 3 and R 4 are independently selected at each occurrence from the following: optionally substituted alkyl., optionally substituted haloalkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; or hydrogen; and
  • the invention provides a compound of formula I-A:
  • J is —C(O)—, —O—C(O)—, N(R 3 )—C(O)—, —C(S)—, —C( ⁇ NR 4 )—, —N(R 3 )—, —S(O)—, or —S(O 2 )— or absent;
  • A is optionally substituted alkyl, optionally substituted heteroaryl, optionally substituted aryl, optionally substituted heterocyclic, or optionally substituted carbocyclic;
  • Y is N or —C(R′′)—
  • each R 1 is independently selected from H, halogen, hydroxy, amino, —CN, —CF 3 , —N 3 , —NO 2 , —OR 4 , —SR 4 ., —SOR 4 , —SO 2 R 4 , —N(R 3 )S(O) 2 —R 4 , —N(R 3 )(SO 2 )NR 3 R 4 , —NR 3 R 4 , —C(O)—OR 4 , —C(O)R 4 , —C(O)NR 3 R 4 , —N(R 3 )C(O)R 4 ; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; optionally substituted alkyl, optionally substituted haloalkyl, optionally substituted alkenyl, or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N
  • each p is independently 0, 1, or 2;
  • R 5 is FE, optionally substituted alkyl, optionally substituted carbocyclic, optionally substituted heterocyclic, optionally substituted aryl, or optionally substituted heteroaryl; each of R 2a , R 2b , R a , and R 2d are each independently H or F, wherein at least two of R 2a , R 2b , R 2c , and R 2d are F;
  • each R 3 and R 4 are independently selected at each occurrence from the following: optionally substituted alkyl, optionally substituted haloalkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; or hydrogen;
  • L is absent or is selected from optionally substituted alkylene, optionally substituted alkenylene or optionally substituted alkynylene, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N;
  • j independently 0, 1, 2, 3, or 4;
  • k independently 0, 1, 2, or 3;
  • n is independently 0, 1, 2, 3, or 4.
  • Y is —C(R′′)—; and R′ and R′′, taken together with the atoms to which each is attached, form a ring.
  • the ring formed by R′ and R′′ is an optionally substituted an optionally substituted heteroaryl, an optionally substituted carbocyclic or an optionally substituted heterocyclic.
  • Y is N and R′ is H, optionally substituted alkyl, optionally substituted aryl, or optionally substituted heteroaryl.
  • G is —N(R 3 )S(O) p —; —N(R 3 )C(O)—, —OS(O) p —, or —C(O)S(O) p —; and p is 2.
  • R 5 is optionally substituted carbocyclic, optionally substituted heterocyclic, optionally substituted aryl, or optionally substituted heteroaryl. In certain embodiments, R 5 is carbocyclic.
  • R 2a and R 2h are F. In other embodiments, R 2c and R 2d are F. In still other embodiments, R 2a and R 2c are F.
  • J is —C(O)—, —O—C(O)—, —S(O)—, or —S(O 2 )—.
  • A is an optionally substituted alkyl, optionally substituted heteroaryl, or optionally substituted aryl. In certain embodiments, A is heteroaryl or alkyl.
  • the invention provides a compound of formula I-A, or a pharmaceutically acceptable salt, ester or prodrug thereof,
  • R′ and R′′ taken together with the atoms to which each is attached, form a phenyl which is optionally substituted with one or more R 1 ;
  • J is —C(O)—, —O—C(O)—, N(R 3 )—C(O)—, —S(O)—, or —S(O 2 )—;
  • A is optionally substituted alkyl, optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted heteroaryl, optionally substituted aryl, optionally substituted heterocyclic, or optionally substituted carbocyclic;
  • each R 1 is independently selected from H, halogen, hydroxy, amino, —CN, —CF 3 , —N 3 , —NO 2 , —OR 4 , —SR 4 , —NR 3 R 4 , optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; optionally substituted haloalkyl, or optionally substituted alkyl, optionally substituted alkenyl, optionally substituted alkynyl;
  • G is —N(R 3 )S(O) p —;
  • p 0, 1, or 2;
  • each of R 2a , R 2b , R 2c and R 2d are each independently H or F, wherein at least two of R 2a , R 2b , R 2c , and R 2d are F;
  • R 5 is optionally substituted carbocyclic or heterocyclic
  • each R 3 and R 4 is independently selected at each occurrence from the following: optionally substituted alkyl, optionally substituted haloalkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; or hydrogen; and
  • n 0, 1, 2, 3, or 4.
  • J is —C(O)—, or —O—C(O)—.
  • A is methyl, ethyl, propyl, iso-propyl, butyl, i-butyl, t-butyl, pentyl, hexyl, heptyl, phenyl, pyridyl, pyrimidyl, pyrazinyl, triazinyl, furanyl, thiophenyl, pyrrolyl, isoxazolyl, or pyrazolyl; each of which may be optionally substituted.
  • G is —N(R 3 )S(O) p — and R 5 is cyclopropyl, cyclobutyl, cyclopentyl, cyciohexyl, or cycloheptyl, each of which is optionally substituted.
  • R 2a and R 2b are F. In another embodiment, R 2a and R 2c are F. In another embodiment, R 2c and R 2d are F.
  • A-J- is A-C(O)— or A-O—C(O)—;
  • A is C r C 8 alkyl, C 2 -C 8 alkenyl or C 2 -C 8 alkynyl, each of which is optionally substituted with one or more R H , or
  • A is 5- to 6-membered carbocyclic or heterocyclic which is optionally substituted with one or more R G ;
  • -G-R 5 is —N(R 3 )S(O) 2 —R 5 ; and
  • R 5 is 3- to 6-membered carbocyclic or heterocyclic which is optionally substituted with one or more R G .
  • Each R H is independently selected at each occurrence from independently selected at each occurrence from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, or cyano; or C 1 -C 6 alkyl, C 2 -C 6 alkenyl or C 2 -C 6 alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R H is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkeny
  • Each R 1 is independently selected at each occurrence from hydrogen or R G .
  • Each R G is independently selected at each occurrence from halo, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano; or C 1 -C 6 alkyl, C 2 -C 6 alkenyl or C 2 -C 6 alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano; or C 3 -C 6 carbocycle or 3- to 6-membered heterocycle, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkyn
  • Each R 3 is independently selected at each occurrence from hydrogen; or C 1 -C 6 alkyl, C 2 -C 6 alkenyl or C 2 -C 6 alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R 3 is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkenyl., C 2 -C 6 alkynyl, C 1 -C 6 haloalkyl, C 2 -C 6 haloal
  • A-J- is A-C(O)— or A-O—C(O)—;
  • A is 5- to 6-membered aryl or heteroaryl which is optionally substituted with one or more R G ;
  • -G-R 5 is —N(R 3 )S(O) 2 —R 5 (preferably —N(H)S(O) 2 —R 5 ); and
  • R 5 is 3- to 6-membered cycloalkyl (preferably cyclopropyl) which is optionally substituted with one or more R G .
  • Each R 1 is independently selected at each occurrence from hydrogen or R G .
  • R G is as defined above.
  • Each R 3 is independently selected at each occurrence from hydrogen; or C 1 -C 6 alkyl, C 2 -C 6 alkenyl or C 2 -C 6 alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R 3 is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, C 1 -C 6 haloalkyl, C 2 -C 6 haloalken
  • the invention provides a compound of formula I-A, or a pharmaceutically acceptable salt, ester or prodrug thereof, wherein:
  • Y is —C(R′′)—
  • R′ and R′′ taken together with the atoms to which each is attached, form a phenyl which is optionally substituted with one or more R 1 ;
  • J is —C(O)— or —O—C(O)—;
  • A is optionally substituted alkyl, optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted heteroaryl, optionally substituted aryl, optionally substituted heterocyclic, or optionally substituted carbocyclic;
  • each R 1 is independently selected from H, halogen, hydroxy, amino, —CN, —CF 3 , —N 3 , —NO 2 , —OR 4 , —SR 4 , —NR 3 R 4 , optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; optionally substituted haloalkyl, or optionally substituted alkyl, optionally substituted alkenyl, optionally substituted alkynyl;
  • G is —N(R 3 )S(O) p —;
  • p 0, 1., or 2;
  • R 5 is optionally substituted carbocyclic or heterocyclic
  • R 2a and R 2b are F, and R 2 and R 2d are H;
  • each R 3 and R 4 is independently selected at each occurrence from the following: optionally substituted alkyl, optionally substituted haloalkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; or hydrogen; and
  • n 0, I, 2, 3, or 4.
  • A is methyl, ethyl, propyl, iso-propyl, butyl, i-butyl, t-butyl, pentyl, hexyl, heptyl,
  • R 5 is optionally substituted cyclopropyl.
  • n 0.
  • A-J- is A-C(O)— or A-O—C(O)—;
  • A is C 1 -C 8 alkyl, C 2 -C 8 alkenyl or C 2 -C 8 alkynyl, each of which is optionally substituted with one or more R H , or
  • A is 5- to 6-membered carbocyclic or heterocyclic which is optionally substituted with one or more R G ;
  • -G-R 5 is —N(R 3 )S(O) 2 —R 5 ; and
  • R 5 is 3- to 6-membered carbocyclic or heterocyclic which is optionally substituted with one or more R G .
  • Each R H is independently selected at each occurrence from independently selected at each occurrence from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, or cyano; or C 1 -C 6 alkyl, C 2 -C 6 alkenyl or C 2 -C 6 alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R H is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkeny
  • Each R 1 is independently selected at each occurrence from hydrogen or R G .
  • Each R G is independently selected at each occurrence from halo, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano; or C 1 -C 6 alkyl, C 2 -C 6 alkenyl or C 2 -C 6 alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano; or C 3 -C 6 carbocycle or 3- to 6-membered heterocycle, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkyn
  • Each R 3 is independently selected at each occurrence from hydrogen; or C 1 -C 6 alkyl, C 2 -C 6 alkenyl or C 2 -C 6 alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-meinbered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R 3 is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, C 1 -C 6 haloalkyl, C 2 -C 6 haloal
  • A-J- is A-C(O)— or A-O—C(O)—;
  • A is 5- to 6-membered aryl or heteroaryl which is optionally substituted with one or more R G ;
  • -G-R 5 is —N(R 3 )S(O) 2 —R 5 (preferably —N(H)S(O) 2 —R 5 ); and
  • R 5 is 3- to 6-membered cycloalkyl (preferably cyclopropyl) which is optionally substituted with one or more R G .
  • Each R 1 is independently selected at each occurrence from hydrogen or R G .
  • R G is as defined above.
  • Each R 3 is independently selected at each occurrence from hydrogen; or C 1 -C 6 alkyl, C 2 -C 6 alkenyl or C 2 -C 6 alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R 3 is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, C 1 -C 6 haloalkyl, C 2 -C 6 haloalken
  • the invention provides a compound of formula II:
  • J is —C(O)—, —O—C(O)—, —N(R 3 )—C(O)—, —S(O)—, or —S(O 2 )—;
  • A is optionally substituted alkyl, or optionally substituted heteroaryl, optionally substituted aryl, optionally substituted heterocyclic, or optionally substituted carbocyclic;
  • R′ is H, optionally substituted aryl; optionally substituted heteroaryl; or optionally substituted alkyl;
  • G is —N(R 3 )S(O) p —;
  • p 0, 1, or 2;
  • each of R 2a , R 2b , R 2c , and R 2d are each independently H or F, wherein at least two of R 2a , R 2b , R 2c , and R 2d are F;
  • R 5 is optionally substituted carbocyclic, optionally substituted heterocyclic, optionally substituted aryl, or optionally substituted heteroaryl;
  • each R 3 and R 4 is independently selected at each occurrence from the following: optionally substituted alkyl, optionally substituted haloalkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; or hydrogen.
  • R′ is H, optionally substituted alkyl; optionally substituted aryl; or optionally substituted heteroaryl.
  • J is —C(O)—, or —O—C(O),
  • A is methyl, ethyl, propyl, iso-propyl, butyl, i-butyl, t-butyl, pentyl, hexyl, heptyl, phenyl, pyridyl, pyrimidyl, pyrazinyl, triazinyl, furanyl, thiophenyl, pyrrolyl, isoxazolyl, or pyrazolyl; each of which may be optionally substituted.
  • G is —N(R 3 )S(O) p — and R 5 is cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, or cycloheptyl, each of which is optionally substituted.
  • R 2a and R 2b are F. In another embodiment, R 2a and R 2c , are F. In another embodiment, R 2c and R 2d are F.
  • A-J- is A-C(O)— or A-O—C(O)—;
  • A is C 1 -C 8 alkyl, C 2 -C 8 alkenyl or C 2 -C 8 alkynyl, each of which is optionally substituted with one or more R H , or
  • A is 5- to 6-membered carbocyclic or heterocyclic which is optionally substituted with one or more R G ;
  • -G-R 5 is —N(R 3 )S(O) 2 —R 5 ; and
  • R 5 is 3- to 6-membered carbocyclic or heterocyclic which is optionally substituted with one or more R G .
  • Each R H is independently selected at each occurrence from independently selected at each occurrence from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, or cyano; or C 1 -C 6 alkyl, C 1 -C 6 alkenyl or C 2 -C 6 alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R FI is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C 1 -C 6 alkyl, C 2 -C 6 alken
  • Each R 1 is independently selected at each occurrence from hydrogen or R G .
  • Each R G is independently selected at each occurrence from halo, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano; or C 1 -C 6 alkyl, C 2 -C 6 alkenyl or C 2 -C 6 alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano; or C 3 -C 6 carbocycle or 3- to 6-membered heterocycle, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkyn
  • Each R 3 is independently selected at each occurrence from hydrogen; or C 1 -C 6 alkyl, C 2 -C 6 alkenyl or C 2 -C 6 alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R 3 is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, C 1 -C 6 haloalkyl, C 2 -C 6 haloalkenyl or C 2 -C 6
  • A-J- is A-C(O)— or A-O—C(O)—;
  • A is 5- to 6-membered aryl or heteroaryl which is optionally substituted with one or more R G ;
  • -G-R 5 is —N(R 3 )S(O) 2 —R 5 (preferably —N(H)S(O) 2 —R 5 ); and
  • R 5 is 3- to 6-membered cycloalkyl (preferably cyclopropyl) which is optionally substituted with one or more R G .
  • Each R 1 is independently selected at each occurrence from hydrogen or R G .
  • R G is as defined above.
  • Each R 3 is independently selected at each occurrence from hydrogen; or C 1 -C 6 alkyl, C 2 -C 6 alkenyl or C 2 -C 6 alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R 3 is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, C 1 -C 6 haloalkyl, C 2 -C 6 haloalken
  • the invention provides a compound of formula II-a:
  • J is —C(O)— or —O—C(O)—;
  • A is optionally substituted alkyl, or optionally substituted heteroaryl, optionally substituted aryl, optionally substituted heterocyclic, or optionally substituted carbocyclic;
  • R′ is H, optionally substituted alkyl; optionally substituted aryl; or optionally substituted heteroaryl;
  • G is —N(R 3 )S(O) p —;
  • p 0, 1, or 2;
  • R 5 is optionally substituted carbocyclic
  • each R 3 is optionally substituted alkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; or hydrogen.
  • R′ is methyl, ethyl, propyl, iso-propyl, butyl, i-butyl, t-butyl, phenyl, pyridyl, pyrimidyl, pyrazinyl, triazinyl, furanyl, thiophenyl, pyrrolyl, isoxazolyl, or pyrazolyl; each of which may be optionally substituted.
  • R′ is methyl, ethyl, propyl, iso-propyl, butyl, i-butyl, t-butyl,
  • A is methyl, ethyl, propyl, iso-propyl, butyl, i-butyl, t-butyl, pentyl, hexyl, heptyl, phenyl, pyridyl, pyrimidyl, pyrazinyl, triazinyl, furanyl, thiophenyl, pyrrolyl, isoxazolyl, or pyrazolyl; each of which may be optionally substituted.
  • A is methyl, ethyl, propyl, iso-propyl, butyl, i-butyl, t-butyl, pentyl, hexyl, heptyl,
  • (1 is —N(R 3 )S(O) p — and R 5 is cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, or cycloheptyl, each of which is optionally substituted.
  • R 5 is optionally substituted cyclopropyl.
  • A-J- is A-C(O)— or A-O—C(O)—;
  • A is C 1 -C 8 alkyl, C 2 -C 8 alkenyl or C 2 -C 8 alkynyl, each of which is optionally substituted with one or more R H , or
  • A is 5- to 6-membered carbocyclic or heterocyclic which is optionally substituted with one or more R G ;
  • -G-R 5 is —N(R 3 )S(O) 2 —R 5 ; and
  • R 5 is 3- to 6-membered carbocyclic or heterocyclic which is optionally substituted with one or more R G .
  • Each R H is independently selected at each occurrence from independently selected at each occurrence from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, or cyano; or C 1 -C 6 alkyl, C 2 -C 6 alkenyl or C 6 alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R H is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2
  • Each R 1 is independently selected at each occurrence from hydrogen or R G .
  • Each R G is independently selected at each occurrence from halo, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano; or C 1 -C 6 alkyl, C 2 -C 6 alkenyl or C 2 -C 6 alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano; or C 3 -C 6 carbocycle or 3- to 6-membered heterocycle, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkyn
  • Each R 3 is independently selected at each occurrence from hydrogen; or C 1 -C 6 alkyl, C 2 -C 6 alkenyl or C 2 -C 6 alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R 3 is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, C 1 -C 6 haloalkyl, C 2 -C 6 haloalken
  • A is 5- to 6-membered aryl or heteroaryl which is optionally substituted with one or more R G ;
  • -G-R 5 is —N(R 3 )S(O) 2 —R 5 (preferably —N(H)S(O) 2 —R 5 ); and
  • R 5 is 3- to 6-membered cycloalkyl (preferably cyclopropyl) which is optionally substituted with one or more R G .
  • Each R 1 is independently selected at each occurrence from hydrogen or R G .
  • R G is as defined above.
  • Each R 3 is independently selected at each occurrence from hydrogen; or C 1 -C 6 alkyl, C 2 -C 6 alkenyl or C 2 -C 6 alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R 3 is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, C 1 -C 6 haloalkyl, C 2 -C 6 haloalken
  • the invention provides a compound of formula IV:
  • Z is OC(O), C(O), C(O)O, or C(O)NR x ;
  • R x is H or alkyl
  • k 0, 1, or 2;
  • each R 1 is independently selected from the group consisting of:
  • n 0, 1, 2, 3, or 4;
  • R 6 is selected from aryl; substituted aryl; heteroaryl; substituted heteroaryl; heterocyclyl, substituted heterocyclyl; —C 1 -C 5 alkyl, substituted —C 1 -C 8 alkyl, —C 3 -C 12 carbocyclic, and substituted —C 3 -C 12 carbocyclic;
  • G is -E-R 5 ;
  • each of R a , R b , R c , and R d are each independently H or F, wherein at least two of R a , R b , R c , and R d are F;
  • R 3 is H, optionally substituted alkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; or optionally substituted carbocyclic.
  • each R 1 is substituted with one, two, three or four independent R E , wherein each R E is independently selected from alkyl, aryl, heteroaryl, cycloalkyl, heterocycloalkyl, halogen, hydroxy, amino, —CN, —CF 3 , —N 3 , —NO 2 , —OR F , —SR, —SOR F , —SO 2 R F , —N(R F )S(O 2 )—R F , —N(R F ) S(O 2 )NR F R F , —NR F R F , —C(O)OR F , —C(O)R F , —C(O)NR F R F , or —N(R F )C(O)R F ; wherein each R F is independently hydrogen, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, or C 2 -C 6
  • E is G-R 5 ; and G is —O—, —S—, —N(R 3 )—, —N(R 3 )S(O) p —, —N(R 3 )C(O)—, —N(R 3 ) C(O)S(O p )—, —OS(O p )—, —C(O)S(O p )—, or —C(O)N(R 3 )S(O p )—; and each p is independently 0, 1, or 1
  • E is —N(R 3 )S(O) p —.
  • R 5 is H; optionally substituted carbocyclic, optionally substituted heterocyclic, optionally substituted aryl, or optionally substituted heteroaryl.
  • R 5 is cyclopropyl optionally substituted with C 1 -C 6 alkyl, C 1 -C 6 alkoxyC 1 -C 6 alkyl, —C(O)OH, —C(O)NH 2 , or —C(O)O—C 1 -C 6 alkyl.
  • R a , R b , R c , and R d are F.
  • R a and R b are F.
  • R c and R d are F.
  • R a and R c are F.
  • three of R a , R b , R c , and R d are F.
  • R a , R b , and R c are F. In one embodiment of each of the above-described aspects of the invention, R a , R c , and R d are F. In another embodiment of each of the above-described aspects of the invention, all of R a , R b , R c , and R d are F.
  • R a and R c are F.
  • J is —(C ⁇ O)—; and A is optionally substituted heteroaryl.
  • J is —(C ⁇ O)—; and A is optionally substituted aryl.
  • J is —(C ⁇ O)—; and A is optionally substituted alkyl.
  • J is —(C ⁇ O)—;
  • A is optionally substituted alkyl;
  • Z is O,
  • ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and any two of R a , R b , R c , and R d are each independently F.
  • J is —(C ⁇ O)—;
  • A is optionally substituted aryl;
  • Z is O,
  • ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and any two of R a , R b , R c , and R d are each independently F.
  • J is —(C ⁇ O)—;
  • A is optionally substituted heteroaryl;
  • Z is O,
  • ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and any two of R a , R b , R c , and R d are each independently F.
  • J is —(C ⁇ O)—;
  • A is optionally substituted alkyl;
  • Z is O,
  • ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and any two of R a , R b , R c , and R d are each independently F.
  • J is —(C ⁇ O)O—;
  • A is optionally substituted aryl;
  • Z is O,
  • ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and any two of R a , R b , R c , and R d are each independently F.
  • J is —(C ⁇ O)O—;
  • A is optionally substituted heteroaryl;
  • Z is O,
  • ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and any two of R a , R b , R c , and R d are each independently F.
  • J is —(C ⁇ O)O— or —(C ⁇ O)—;
  • A is optionally substituted alkyl;
  • Z is O or (C ⁇ O),
  • ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and
  • R a and R b are F, and R c and R d are H.
  • J is —(C ⁇ O)O— or —(C ⁇ O)—;
  • A is optionally substituted alkyl;
  • Z is O or (C ⁇ O),
  • ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and
  • R a and R d are F, and R c and R d are H.
  • J is —(C ⁇ O)O— or —(C ⁇ O)—;
  • A is optionally substituted alkyl;
  • Z is O or (C ⁇ O),
  • ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and
  • R a and R b are H, and R c , and R d are F.
  • J is —(C ⁇ O)O— or —(C ⁇ O)—;
  • A is optionally substituted aryl;
  • Z is O or (C ⁇ O),
  • ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and
  • R a and R b are F, and R c and R d are H.
  • J is —(C ⁇ O)O— or —(C ⁇ O)—;
  • A is optionally substituted aryl;
  • Z is O or (C ⁇ O),
  • ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and
  • R a and R c are F, and R b and R d are H.
  • J is —(C ⁇ O)O— or —(C ⁇ O)—;
  • A is optionally substituted aryl;
  • Z is O or (C ⁇ O),
  • ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and
  • R a and R b are H, and R c and R d are F.
  • J is —(C ⁇ O)O— or —(C ⁇ O)—;
  • A is optionally substituted heteroaryl;
  • Z is O or (C ⁇ O),
  • ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and
  • R a and R b are F, and R c and R d are H.
  • J is —(C ⁇ O)O— or —(C ⁇ O)—;
  • A is optionally substituted heteroaryl;
  • Z is O or (C ⁇ O),
  • ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and
  • R a and R c are F, and R b and R d are H.
  • J is —(C ⁇ O)O— or —(C ⁇ O)—;
  • A is optionally substituted heteroaryl;
  • Z is O or (C ⁇ O),
  • ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and
  • R a and R b are H, and R c and R d are F.
  • E is —NHS(O) 2 R 5 ;
  • R 5 is independently cyclopropyl optionally substituted with C 1 -C 6 alkyl;
  • J is —(C ⁇ O)—;
  • A is optionally substituted alkyl, Z is O;
  • ring X is phenanthridinyl or quinoxalinyl; and any two of R a , R b , R c , and R d are each independently F.
  • E is —NHS(O) 2 R 5 ;
  • R 5 is independently cyclopropyl optionally substituted with C 1 -C 6 alkyl;
  • J is —(C ⁇ O)—;
  • A is optionally substituted aryl, Z is O;
  • ring X is phenanthridinyl or quinoxalinyl; and any two of R a , R b , R c , and R d are each independently F.
  • E is —NHS(O) 2 —R 5 ;
  • R 5 is independently cyclopropyl optionally substituted with C 1 -C 6 alkyl;
  • J is —(C ⁇ O)—;
  • A is optionally substituted heteroaryl, Z is O;
  • ring X is phenanthridinyl or quinoxalinyl; and any two of R a , R b , R c , and R d are each independently F.
  • E is —NHS(O) 2 —R 5 ;
  • R 5 is independently cyclopropyl optionally substituted with C 1 -C 6 alkyl;
  • J is —(C ⁇ O)O—;
  • A is optionally substituted alkyl, Z is O;
  • ring X is phenanthridinyl or quinoxalinyl; and any two of R a , R b , R c , and R d are each independently F.
  • E is —NHS(O) 2 —R 5 ;
  • R 5 is independently cyclopropyl optionally substituted with C 1 -C 6 alkyl;
  • J is —(C ⁇ O)O—;
  • A is optionally substituted aryl, Z is O;
  • ring X is phenanthridinyl or quinoxalinyl; and any two of R a , R b , R c , and R d are each independently F.
  • E is —NHS(O) 2 —R 5 ;
  • R 5 is independently cyclopropyl optionally substituted with C 1 -C 6 alkyl;
  • J is —(C ⁇ O)O—;
  • A is optionally substituted heteroaryl, Z is O;
  • ring X is phenanthridinyl or quinoxalinyl; and any two of R a , R b , R c , and R d are each independently F.
  • A is an optionally substituted nitrogen-containing heteroaryl.
  • A is optionally substituted isoxazolyl, optionally substituted thiazolyl, optionally substituted pyrazolyl, optionally substituted pyrazinyl, optionally substituted pyridinyl, or optionally substituted pyrimidinyl.
  • A is alkyl-substituted isoxazolyl.
  • J can be, for example, —(C ⁇ O)— or —(C ⁇ O)O—; and A is selected from the following groups:
  • Representative compounds include, but are not limited to, the following compounds:
  • the invention provides a pharmaceutical composition
  • a pharmaceutical composition comprising a therapeutically effective amount of a compound of the invention (e.g., a compound of formula I, or any formulae as described herein), or a pharmaceutically acceptable salt, ester, or prodrug thereof, in combination with a pharmaceutically acceptable carrier or excipient.
  • a compound of the invention e.g., a compound of formula I, or any formulae as described herein
  • a pharmaceutically acceptable salt, ester, or prodrug thereof in combination with a pharmaceutically acceptable carrier or excipient.
  • the invention provides a pharmaceutical composition
  • a pharmaceutical composition comprising a therapeutically effective amount of a compound described herein, or an embodiment or example described herein, or a pharmaceutically acceptable salt, ester, hydrate, solvate, polymorph, or prodrug thereof, in combination with a pharmaceutically acceptable carrier or excipient.
  • the pharmaceutical compositions of the present invention may further contain one or more other anti-HCV agents.
  • anti-HCV agents include, but are not limited to, ⁇ -interferon; ⁇ -interferon; pegylated interferon- ⁇ ; pegylated interferon-lambda; ribavirin; viramidine; R-5158; nitazoxanide; amantadine; Debio-025, NEM-811; HCV polymerase inhibitors such as R7128, R1626, R4048, T-1106, PSI-7851, PF-00868554, ANA-598, IDX184, IDX102, IDX375, GS-9190, VCH-759, VCH-916, MK-3281, BCX-4678, MK-3281, VBY708, ANA598, GL59728 or GL60667; BMS-790052; BMS-791325; BMS-650032; HCV entry, helicase or
  • compositions of the present invention may further contain another HCV protease inhibitor, such as telaprevir, boceprevir, ITMN-191, B1-201335, TMC-435, MK-7009, VBY-376, VX-500, VX-813, PHX-B, ACH-1625, IDX136, or IDX316.
  • another HCV protease inhibitor such as telaprevir, boceprevir, ITMN-191, B1-201335, TMC-435, MK-7009, VBY-376, VX-500, VX-813, PHX-B, ACH-1625, IDX136, or IDX316.
  • the invention provides a pharmaceutical composition further comprising pegylated interferon, another anti-viral, anti-bacterial, anti-fungal or anti-cancer agent, or an immune modulator, and/or further comprising a cytochrome P450 monooxygenase inhibitor or a pharmaceutically acceptable salt thereof.
  • the cytochrome P450 monooxygenase inhibitor is ritonavir.
  • the invention provides for the use of a compound of the invention to manufacture an agent for preventing or treating viral infection.
  • the invention provides for the use of a compound of the invention to manufacture an agent for preventing or treating hepatitis C viral infection.
  • the present invention also contemplates the use of a solvate (e.g., hydrate) of a compound of the invention to manufacture pharmaceutical compositions for preventing or treating hepatitis C infection.
  • solvate refers to the physical association of a compound of the invention with one or more solvent molecule, whether organic or inorganic. This physical association often includes hydrogen bonding. In certain instances, the solvate is capable of isolation, for example, when one or more solvate molecules are incorporated in the crystal lattice of the crystalline solid.
  • the compounds or pharmaceutical compositions of the invention are administered with ritonavir, either simultaneously or sequentially.
  • a compound or a pharmaceutical composition of the invention is administered in the same composition as ritonavir.
  • a compound or a pharmaceutical composition thereof of the invention is administered in a different composition than ritonavir.
  • compositions of the present invention may further comprise inhibitor(s) of other targets in the HCV life cycle, including, but not limited to, helicase, polyrnerase, metalloprotease, CD81, NS5A, cyclophilin, and internal ribosome entry site (IRES).
  • inhibitor(s) of other targets in the HCV life cycle including, but not limited to, helicase, polyrnerase, metalloprotease, CD81, NS5A, cyclophilin, and internal ribosome entry site (IRES).
  • the invention provides a method of treating a viral infection in a subject, comprising administering to the subject a therapeutically effective amount of a compound of the invention (e.g., a compound of formula I or I′ described herein), or a pharmaceutically acceptable salt, ester or prodrug thereof, or a pharmaceutical composition comprising the same.
  • a compound of the invention e.g., a compound of formula I or I′ described herein
  • a pharmaceutically acceptable salt, ester or prodrug thereof e.g., a pharmaceutically acceptable salt, ester or prodrug thereof, or a pharmaceutical composition comprising the same.
  • the present invention includes methods of treating hepatitis C infections in a subject in need of such treatment by administering to said subject an anti-HCV virally effective amount or an inhibitory amount of the compounds or pharmaceutical compositions of the present invention.
  • the present invention includes methods of treating hepatitis C infections in a subject in need of such treatment by administering to said subject a compound or a pharmaceutical composition of the present invention.
  • the methods can further include administration of an additional therapeutic agent, including another antiviral agent or an anti-HCV agent as described hereinabove.
  • the additional agent can be co-administered (such as concurrently administered or sequentially administered) with a compound (a pharmaceutically acceptable salt, ester or prodrug thereof) or a pharmaceutical composition of the present invention.
  • the additional agent(s) and a compound (or a pharmaceutically acceptable salt, ester or prodrug thereof) of the present invention can be formulated in the same composition, or in different compositions but co-administered concurrently or sequentially.
  • the methods herein can further include the step of identifying that the subject is in need of treatment for hepatitis C infection. The identification can be by subjective (e.g., health care provider determination) or objective (e.g., diagnostic test) means.
  • the invention provides a method as described above, further comprising administering an additional anti-hepatitis C virus agent.
  • anti-hepatitis C virus agents include, but are not limited to, ⁇ -interferon; ⁇ -interferon; pegylated interferon- ⁇ ; pegylated interferon-lambda; ribavirin; viramidine; R-5158; nitazoxanide; amantadine; Debio-025, NIM-811; HCV polymerase inhibitors such as R7128, R1626, R4048, T-1106, PSI-7851, PF-00868554, ANA-598, IDXI84, IDX102, IDX375, GS-9190, VCH-759, VCH-916, MK-3281, BCX-4678, MK-3281, VBY708, ANA598, GL59728 or GL60667; BMS-790052; BMS-791325; BMS-6500
  • a compound or a pharmaceutical composition of the present invention is co-administered with, or used in combination with, pegylated interferon (e.g., pegylated interferon alpha-2a or 2b) and ribavirin.
  • pegylated interferon e.g., pegylated interferon alpha-2a or 2b
  • Ritonavir or another cytochrome P450 monooxygenase inhibitor can also be used to enhance the pharmacokinetics of the compound of the present invention.
  • the patient being treated is preferably infected with HCV genotype-1 (e.g., genotype 1a or 1b), Patients infected with other HCV genotypes, such as genotypes 2, 3, 4, 5 or 6, can also be treated with a compound or a pharmaceutical composition of the present invention.
  • the invention provides a method as described above, further comprising administering another 1-ICV protease inhibitor, an HCV polymerase inhibitor, an HCV helicase inhibitor, or an internal ribosome entry site (IRES) inhibitor, such as telaprevir, boceprevir, ITMN-191, 131-201335, TMC-435, MK-7009, VBY-376, VX-500, VX-813, PHX-B, ACH-1625, IDX136, IDX316, pegylated interferon, another anti-viral, anti-bacterial, anti-fungal or anti-cancer agent, or an immune modulator, and/or further comprising a cytochrome P450 monooxygenase inhibitor or a pharmaceutically acceptable salt thereof.
  • the cytochrome P450 monooxygenase inhibitor is ritonavir.
  • An additional embodiment of the present invention includes methods of treating biological samples by contacting the biological samples with the compounds of the present invention.
  • Yet another aspect of the present invention is a process of making any of the compounds delineated herein employing any of the synthetic means delineated herein.
  • C x -C y The number of carbon atoms in a hydrocarbyl substituent can be indicated by the prefix “C x -C y ,” where x is the minimum and y is the maximum number of carbon atoms in the substituent.
  • a C, chain means a hydrocarbyl chain containing x carbon atoms.
  • halo indicates that the substituent to which the prefix is attached is substituted with one or more independently selected halogen radicals.
  • C 1 -C 8 haloalkyl means a C 1 -C 8 alkyl substituent wherein at least one hydrogen radical is replaced with a halogen radical.
  • a linking element in a depicted structure is “absent”, then the left element in the depicted structure is directly linked to the right element in the depicted structure.
  • a chemical structure is depicted as X-(L) n -Y wherein L is absent or n is 0, then the chemical structure is X—Y.
  • alkyl refers to a saturated, straight- or branched-chain hydrocarbon radical preferably containing one to eight carbon atoms (C 1 -C 8 alkyl).
  • alkyl radicals include, but are not limited to, methyl, ethyl, propyl, isopropyl, n-butyl, tert-butyl, neopentyl, n-hexyl, heptyl, octyl radicals and the like.
  • alkenyl denotes a straight- or branched-chain hydrocarbon radical containing one or more double bonds and preferably containing two to eight carbon atoms (C 2 -C 8 alkenyl).
  • Alkenyl groups include, but are not limited to, for example, ethenyl, propenyl, butenyl, 1-methyl-2-buten-1-yl, heptenyl, octenyl and the like.
  • alkynyl denotes a straight- or branched-chain hydrocarbon radical containing one or more triple bonds and preferably containing two to eight carbon atoms (C 2 -C 8 alkynyl).
  • Representative alkynyl groups include, but are not limited to, for example, ethynyl, 1-propynyl, 1-butyny-1, heptynyl, octynyl and the like.
  • cycloalkyl denotes a monovalent group derived from a monocyclic or polycyclic saturated carbocyclic ring compound and preferably containing 3 to 14 carbon ring atoms (C 3 -C 14 cycloalkyl).
  • Examples of cycloalkyl include, but not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyciohexyl, bicyclo[2.2.1]heptyl, and bicyclo[2.2.2]octyl and the like.
  • Carbocycle or “carbocyclic” or “carbocyclyl” refer to a saturated (e.g., “cycloalkyl”), partially saturated (e.g., “cycloalkenyl” or “cycloalkynyl”) or completely unsaturated (e.g., “aryl”) ring system containing zero heteroatom ring atom and preferably containing 3 to 14 carbon ring atoms (C 3 -C 14 carbocyclyl, such as C 3 -C 14 cycloalkyl).
  • a carbocyclyl may be, without limitation, a single ring, or two or more fused or covalently inked rings, or bridged or Spiro rings.
  • a substituted carbocyclyl may have either cis or trans geometry.
  • Representative examples of carbocyclyl groups include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, cyclooctyl, cyclopentenyl, cyclopentadienyl, cyclohexadienyl, adamantyl, decahydro-naphthalenyl, octahydro-indenyl, cyclohexenyl, phenyl, naphthyl, fluorenyl, indanyl, 1,2,3,4-tetrahydro-naphthyl, indenyl, isoindenyl, bicyclodecanyl, anthracenyl, phenanthrene, benzonaphthenyl (also known as “phenalenyl”), decalinyl,
  • aryl refers to an aromatic carbocyclyl containing from 6 to 14 carbon ring atoms.
  • Non-limiting examples of aryls include phenyl, naphthalenyl, anthracenyl, and indenyl and the like.
  • An aryl group can be connected to the parent molecular moiety through any substitutable carbon atom of the group.
  • heteroaryl means an aromatic heterocyclyl typically containing from 5 to 14 ring atoms.
  • five-membered heteroaryls include imidazolyl; furanyl; thiophenyl (or thienyl or thiofuranyl); pyrazolyl; oxazolyl; isoxazolyl; thiazolyl; 1,2,3-, 1,2,4-, 1,2,5-, and 1,3,4-oxadiazolyl; and isothiazolyl.
  • Non-limiting examples of six-membered heteroaryls include pyridinyl; pyrazinyl; pyrimidinyl; pyridazinyl; and 1,3,5-, 1,2,4-, and 1,2,3-triazinyl.
  • Non-limiting examples of 6/5-membered fused ring heteroaryls include benzothiofiiranyl, isobenzothiofuranyl, benzisoxazolyl, benzoxazolyl, purinyl, and anthranilyl.
  • Non-limiting examples of 6/6-membered fused ring heteroaryls include quinolinyl; isoquinolinyl; and benzoxazinyl (including ciimolinyl and quinazolinyl).
  • heterocycloalkyl refers to a non-aromatic 3-, 4-, 5-, 6- or 7-membered ring or a bi- or tri-cyclic group fused system, where at least one of the ring atoms is a heteroatom, and where (i) each 5-membered ring has 0 to 1 double bonds and each 6-membered ring has 0 to 2 double bonds, (ii) the nitrogen and sulfur heteroatoms may optionally be oxidized, (iii) the nitrogen heteroatom may optionally be quaternized, and (iv) any of the above rings may be fused to a benzene ring.
  • heterocycloalkyl groups include, but are not limited to, [1,3]dioxolane, pyrrolidinyl, pyrazolinyl, pyrazolidinyl, imidazolinyl, imidazolidinyl, piperidinyl, piperazinyl, oxazolidinyl, isoxazolidinyl, morpholinyl, thiazolidinyl, isothiazolidinyl, and tetrahydrofuryl and the like.
  • heterocyclic or “heterocycle” or “heterocyclyl” refer to a saturated (e.g., “heterocycloalkyl”), partially unsaturated (e.g., “heterocycloalkenyl” or “heterocycloalkynyl”) or completely unsaturated (e.g., “heteroaryl”) ring system preferably containing 3 to 14 ring atoms, where at least one of the ring atoms is a heteroatom (i.e., nitrogen, oxygen or sulfur), with the remaining ring atoms being independently selected from the group consisting of carbon, nitrogen, oxygen and sulfur.
  • heteroatom i.e., nitrogen, oxygen or sulfur
  • a heterocyclic or heterocycle or heterocyclyl may be, without limitation, a single ring, or two or more fused or covalently linked rings, or bridged or Spiro rings.
  • a heterocyclyl group can be linked to the parent molecular moiety via any substitutable carbon or nitrogen atom in the group, provided that a stable molecule results.
  • a heterocyclyl may be, without limitation, a single ring.
  • Non-limiting examples of single-ring heterocyclyls include furanyl, dihydrofuranyl, pyrrolyl, isopyrrolyl, pyrrolinyl, pyrrolidinyl, imidazolyl, isoimidazolyl, imidazolinyl, imidazolidinyl, pyrazolyl, pyrazolinyl, pyrazolidinyl, triazolyl, tetrazolyl, dithiolyl, oxathiolyl, oxazolyl, isoxazolyl, thiazolyl, isothiazolyl, thiazoliriyl, isothiazolinyl, thiazolidinyl, isothiazolidinyl, thiodiazolyl, oxathiazolyl, oxadiazoly, pyranyl, dihydropyranyl, pyrridinyl, piperidinyl, pyridazinyl,
  • a heterocyclyl may also include, without limitation, two or more rings fused together, such as, for example, naphthyridinyl, thiazolpyrimidinyl, thienopyrimidinyl, pyrimidopyrimidinyl, or pyridopyrimidinyl.
  • a heterocyclyl may comprise one or more sulfur atoms as ring members; and in some cases, the sulfur atom(s) is oxidized to SO or SO 2 .
  • the nitrogen heteroatom(s) in a heterocyclyl may or may not be quaternized, and may or may not be oxidized to N-oxide. In addition, the nitrogen heteroatom(s) may or may not be N-protected.
  • optionally substituted refers to groups that are substituted or unsubstituted by independent replacement of one, two, or three or more of the hydrogen atoms thereon with typical substituents including, but not limited to:
  • —NH 2 protected amino, —NH alkyl, —NH alkenyl, —NH alkynyl, —NH cycloalkyl, —NH— aryl, —NH-heteroaryl, —NH-heterocyclic, -dialkylamino, -diarylamino, -diheteroarylamino,
  • —O— alkyl —O— alkenyl. —O— alkynyl, —O— cycloalkyl, —O-aryl, —O-heteroaryl, —O— heterocyclic,
  • -alkyl -alkenyl, -alkynyl, -aryl, -arylalkyl, -heteroaryl, -heteroarylalkyl, -heterocycloalkyl, -cycloalkyl, -carbocyclic, -heterocyclic, polyalkoxyalkyl, polyalkoxy, methoxymethoxy, -methoxyethoxy, —SH, —S— alkyl, —S— alkenyl, —S— alkynyl, —S— carbocyclyl, —S-aryl, —S-heteroaryl, —S-heterocyclyl, or methylthiomethyl.
  • aryls, heteroaryls, carbocycles, heterocycles, alkyls, and the like can be further substituted.
  • halo and “halogen,” as used herein, refer to an atom selected from fluorine, chlorine, bromine and iodine.
  • Any divalent group having two points of connection to two other groups may be aligned in either direction, e.g., the term “—C(O)O-” is interpreted to include both —C(O)O— and —OC(O)—.
  • subject refers to a mammal.
  • a subject therefore refers to, for example, dogs, cats, horses, cows, pigs, guinea pigs, and the like.
  • the subject is a human.
  • the subject may be either a patient or a healthy human.
  • LG refers to any group that leaves in the course of a chemical reaction involving the group and includes but is not limited to halogen, brosylate, mesylate, tosylate, triflate, p-nitrobenzoate, phosphonate groups, for example.
  • protected hydroxy refers to a hydroxy group protected with a hydroxy protecting group, as defined above, including benzoyl, acetyl, trirnethylsilyl, triethylsilyl, methoxyrnethyl groups, for example.
  • hydroxy protecting group refers to a labile chemical moiety which is known in the art to protect a hydroxy group against undesired reactions during synthetic procedures. After said synthetic procedure(s) the hydroxy protecting group as described herein may be selectively removed. Hydroxy protecting groups as known in the are described generally in T. H. Greene and P. G. M. Wuts, Protective Groups in Organic Synthesis, 3rd edition, John Wiley & Sons, New York (1999).
  • hydroxy protecting groups include benzyloxycarbonyl, 4-nitrobenzyloxycarbonyl, 4-bromobenzyloxycarbonyl, 4-methoxybenzyloxy-carbonyl, methoxycarbonyl, tert-butoxycarbonyl, isopropoxycarbonyl, diphenylmethoxycarbonyl, 2,2,2-trichloroethoxycarbonyl, 2-(trimethylsilypethoxycarbonyl, 2-furfuryloxycarbonyl, allyloxycarbonyl, acetyl, formyl, chloroacetyl, trifluoroacetyl, methoxyacetyl, phenoxyacetyl, benzoyl, methyl, t-butyl, 2,2,2-trichloroethyl, 2-trimethylsilyl ethyl, 1,1-dimethyl-2-propenyl, 3-methyl-3-butenyl, allyl, benzyl, para-methoxybenzyldipheny
  • Preferred hydroxy protecting groups for the present invention are acetyl (Ac or —C(O)CH 3 ), benzoyl (Bz or —C(O)C 6 H 5 ), and trimethylsilyl (TMS or —Si(CH 3 ) 3 ).
  • amino protecting group refers to a labile chemical moiety which is known in the art to protect an amino group against undesired reactions during synthetic procedures. After said synthetic procedure(s) the amino protecting group as described herein may be selectively removed.
  • Amino protecting groups as known in the are described generally in T. H. Greene and P. G. M. Wuts, Protective Groups in Organic Synthesis, 3rd edition, John Wiley & Sons, New York (1999). Examples of amino protecting groups include, but are not limited to, t-butoxycarbonyl, 9-fluorenylmethoxycarbonyl, benzyloxycarbonyl, and the like.
  • protected amino refers to an amino group protected with an amino protecting group as defined above.
  • alkylamino refers to a group having the structure —N(R a R b ), where R a and R b are independent 1-1 or alkyl.
  • the term “pharmaceutically acceptable salt” refers to those salts of the compounds formed by the process of the present invention which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and lower animals without undue toxicity, irritation, allergic response and the like, and are commensurate with a reasonable benefit/risk ratio.
  • Pharmaceutically acceptable salts are well known in the art. For example, S. M. Berge, et al. describes pharmaceutically acceptable salts in detail in J. Pharmaceutical Sciences, 66: 1-19 (1977). The salts can be prepared in situ during the final isolation and purification of the compounds of the invention, or separately by reacting the tree base function with a suitable organic acid.
  • salts include, but are not limited to, nontoxic acid addition salts, or salts of an amino group formed with inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid or with organic acids such as acetic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange.
  • inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid
  • organic acids such as acetic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange.
  • salts include, but are not limited to, adipate, alginate, ascorbate, aspartate, benzenesulfonate, benzoate, bisulfate, borate, butyrate, camphorate, camphorsulfonate, citrate, cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, formate, fumarate, glucoheptonate, glycerophosphate, gluconate, hemisulfate, heptanoate, hexanoate, hydroiodide, 2-hydroxy-ethanestilfonate, lactobionate, lactate, laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, pamoate
  • alkali or alkaline earth metal salts include sodium, lithium, potassium, calcium, or magnesium salts, and the like.
  • Further pharmaceutically acceptable salts include, when appropriate, nontoxic ammonium, quaternary ammonium, and amine cations formed using counterions such as halide, hydroxide, carboxylate, sulfate, phosphate, nitrate, alkyl having from 1 to 6 carbon atoms, sulfonate and aryl sulfonate.
  • ester refers to esters of the compounds formed by the process of the present invention which hydrolyze in vivo and include those that break down readily in the human body to leave the parent compound or a salt thereof.
  • Suitable ester groups include, for example, those derived from pharmaceutically acceptable aliphatic carboxylic acids, particularly alkanoic, alkenoic, cycloalkanoic and alkanedioic acids, in which each alkyl or alkenyl moiety advantageously has not more than 6 carbon atoms.
  • esters include, but are not limited to, formates, acetates, propionates, butyrates, acrylates and ethylsuccinates.
  • prodrugs refers to those prodrugs of the compounds formed by the process of the present invention which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and lower animals with undue toxicity, irritation, allergic response, and the like, commensurate with a reasonable benefit/risk ratio, and effective for their intended use, as well as the zwitterionic forms, where possible, of the compounds of the present invention.
  • Prodrug as used herein means a compound which is convertible in vivo by metabolic means (e.g. by hydrolysis) to afford any compound delineated by the formulae of the instant invention.
  • prodrugs are known in the art, for example, as discussed in Bundgaard, (ed.), Design of Prodrugs, Elsevier (1985); Widder, et al. (ed.), Methods in Enzymology, vol. 4, Academic Press (1985); Krogsgaard-Larsen, et al., (ed). “Design and Application of Prodrugs, Textbook of Drug Design and Development, Chapter 5, 113-191 (1991); Bundgaard, et al., Journal of Drug Deliver Reviews, 8:1-38(1992); Bundgaard, J. of Pharmaceutical Sciences, 77:285 et seq.
  • This invention also encompasses pharmaceutical compositions containing, and methods of treating viral infections through administering, pharmaceutically acceptable prodrugs of compounds of the invention.
  • compounds of the invention having free amino, amido, hydroxy or carboxylic groups can be converted into prodrugs.
  • Prodrugs include compounds wherein an amino acid residue, or a polypeptide chain of two or more (e.g., two, three or four) amino acid residues is covalently joined through an amide or ester bond to a free amino, hydroxy or carboxylic acid group of compounds of the invention.
  • the amino acid residues include but are not limited to the 20 naturally occurring amino acids commonly designated by three letter symbols and also includes 4-hydroxyproline, hydroxylysine, demosine, isodemosine, 3-methylhistidine, norvalin, beta-alanine, gamma-aminobutyric acid, citrulline, homocysteine, homoserine, ornithine and methionine sulfone. Additional types of prodrugs are also encompassed. For instance, free carboxyl groups can be derivatized as amides or alkyl esters.
  • Free hydroxy groups may be derivatized using groups including but not limited to hemisuccinates, phosphate esters, dimethylaminoacetates, and phosphoryloxymethyloxy carbonyls, as outlined in Advanced Drug Delivery Reviews, 1996, 19, 1 15.
  • Carbamate prodrugs of hydroxy and amino groups are also included, as are carbonate prodrugs, sulfonate esters and sulfate esters of hydroxy groups.
  • stable refers to compounds which possess stability sufficient to allow manufacture and which maintains the integrity of the compound for a sufficient period of time to be useful for the purposes detailed herein (e.g., therapeutic or prophylactic administration to a subject).
  • compositions of the present invention comprise a therapeutically effective amount of a compound of the present invention formulated together with one or more pharmaceutically acceptable carriers.
  • pharmaceutically acceptable carrier means a non-toxic, inert solid, semi-solid or liquid filler, diluent, encapsulating material or formulation auxiliary of any type.
  • the pharmaceutical compositions of this invention can be administered to humans and other animals orally, rectally, parenterally, intracisternally, intravaginally, intraperitoneally, topically (as by powders, ointments, or drops), buccally, or as an oral or nasal spray.
  • Liquid dosage forms for oral administration include pharmaceutically acceptable emulsions, microemulsions, solutions, suspensions, syrups, and elixirs.
  • the liquid dosage forms may contain inert diluents commonly used in the art such as, for example, water, alcohol or other solvents, solubilizing agents and emulsifiers such as ethyl alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, propylene glycol, 1,3-butylene glycol, polysorbate, dimethylformamide, oils (in particular, cottonseed, groundnut, corn, germ, olive, castor, and sesame oils), mono- or di-glycerides, glycerol, tetrahydrofurfuryl alcohol, polyethylene glycols and fatty acid esters of sorbitan, and mixtures thereof.
  • inert diluents commonly used in the art such as
  • the oral compositions can also include adjuvants such as wetting agents, emulsifying and suspending agents, antioxidants, sweetening, flavoring, and perfuming agents.
  • adjuvants such as wetting agents, emulsifying and suspending agents, antioxidants, sweetening, flavoring, and perfuming agents.
  • the liquid dosage form can also be encapsulated in a gelatin capsule, wherein a compound of the present invention can be dissolved in a pharmaceutically acceptable canter containing, for example, one or more soltibilizating agents (e.g., polysorbate 80 and mono and diglycerides), and other suitable excipients (e.g., an antioxidants such as ascorbyl palmitate, or a sweetening or flavoring agent).
  • soltibilizating agents e.g., polysorbate 80 and mono and diglycerides
  • other suitable excipients e.g., an antioxidants such as ascorbyl palmitate, or a sweetening or flavoring agent
  • sterile injectable aqueous or oleaginous suspensions may be formulated according to the known art using suitable dispersing or wetting agents and suspending agents.
  • the sterile injectable preparation may also be a sterile injectable solution, suspension or emulsion in a nontoxic parenterally acceptable diluent or solvent, for example, as a solution in 1,3-butanediol.
  • acceptable vehicles and solvents that may be employed are water, Ringer's solution, U.S.P. and isotonic sodium chloride solution.
  • sterile, fixed oils are conventionally employed as a solvent or suspending medium.
  • any bland fixed oil can be employed including synthetic mono- or diglycerides.
  • fatty acids such as oleic acid are used in the preparation of injectables.
  • compositions for rectal or vaginal administration are preferably suppositories which can be prepared by mixing the compounds of this invention with suitable non-irritating excipients or carriers such as cocoa butter, polyethylene glycol or a suppository wax which are solid at ambient temperature but liquid at body temperature and therefore melt in the rectum or vaginal cavity and release the active compound.
  • suitable non-irritating excipients or carriers such as cocoa butter, polyethylene glycol or a suppository wax which are solid at ambient temperature but liquid at body temperature and therefore melt in the rectum or vaginal cavity and release the active compound.
  • compositions of a similar type may also be employed as fillers in soft and hard-filled gelatin capsules using such excipients as lactose or milk sugar as well as high molecular weight polyethylene glycols and the like.
  • the active compounds can also be in micro-encapsulated form with one or more excipients as noted above
  • the solid dosage forms of tablets, dragees, capsules, pills, and granules can be prepared with coatings and shells such as enteric coatings, release controlling coatings and other coatings well known in the pharmaceutical formulating art.
  • the active compound may be admixed with at least one inert diluent such as sucrose, lactose or starch.
  • Such dosage forms may also comprise, as is normal practice, additional substances other than inert diluents, e.g., tableting lubricants and other tableting aids such a magnesium stearate and microcrystalline cellulose.
  • the dosage forms may also comprise buffering agents.
  • a compound of the invention is formulated in a solid dispersion, where the compound can be molecularly dispersed in a matrix which comprises a pharmaceutically acceptable, hydrophilic polymer.
  • the matrix may also contain a pharmaceutically acceptable surfactant.
  • Suitable solid dispersion technology for formulating a compound of the invention includes, but is not limited to, melt extrusion, spray drying, or solvent evaporization.
  • Dosage forms for topical or transdermal administration of a compound of this invention include ointments, pastes, creams, lotions, gels, powders, solutions, sprays, inhalants or patches.
  • the active component is admixed under sterile conditions with a pharmaceutically acceptable carrier and any needed preservatives or buffers as may be required.
  • Ophthalmic formulation, ear drops, eye ointments, powders and solutions are also contemplated as being within the scope of this invention.
  • the ointments, pastes, creams and gels may contain, in addition to an active compound of this invention, excipients such as animal and vegetable fats, oils, waxes, paraffins, starch, tragacanth, cellulose derivatives, polyethylene glycols, silicones, bentonites, silicic acid, talc and zinc oxide, or mixtures thereof.
  • excipients such as animal and vegetable fats, oils, waxes, paraffins, starch, tragacanth, cellulose derivatives, polyethylene glycols, silicones, bentonites, silicic acid, talc and zinc oxide, or mixtures thereof.
  • Powders and sprays can contain, in addition to the compounds of this invention, excipients such as lactose, talc, silicic acid, aluminum hydroxide, calcium silicates and polyamide powder, or mixtures of these substances.
  • Sprays can additionally contain customary propellants such as chlorafluorohydrocarbons.
  • Transdermal patches have the added advantage of providing controlled delivery of a compound to the body.
  • dosage forms can be made by dissolving or dispensing the compound in the proper medium.
  • Absorption enhancers can also be used to increase the flux of the compound across the skin.
  • the rate can be controlled by either providing a rate controlling membrane or by dispersing the compound in a polymer matrix or gel.
  • viral infections are treated or prevented in a subject, such as a human or another animal, by administering to the subject a therapeutically effective amount of a compound of the invention (or a pharmaceutically acceptable salt, ester or prodrug thereof), in such amounts and for such time as is necessary to achieve the desired result.
  • a therapeutically effective amount of a compound of the invention means a sufficient amount of the compound so as to decrease the viral load in a subject and/or decrease the subject's HCV symptoms.
  • a therapeutically effective amount of a compound of this invention will be at a reasonable benefit/risk ratio applicable to any medical treatment.
  • An inhibitory amount or dose of the compounds of the present invention may range from about 0.1 mg/Kg to about 500 mg/Kg, alternatively from about 1 to about 50 mg/Kg. Inhibitory amounts or doses will also vary depending on route of administration, as well as the possibility of co-usage with other agents.
  • viral infections are treated or prevented in a subject such as a human or lower mammal by administering to the subject an anti-hepatitis C virally effective amount or an inhibitory amount of a compound of the present invention, in such amounts and for such time as is necessary to achieve the desired result.
  • An additional method of the present invention is the treatment of biological samples with an inhibitory amount of a compound of composition of the present invention in such amounts and for such time as is necessary to achieve the desired result.
  • anti-hepatitis C virally effective amount of a compound of the invention, as used herein, means a sufficient amount of the compound so as to decrease the viral load in a biological sample or in a subject.
  • an anti-hepatitis C virally effective amount of a compound of this invention will be at a reasonable benefit/risk ratio applicable to any medical treatment.
  • inhibitory amount of a compound of the present invention means a sufficient amount to decrease the hepatitis C viral load in a biological sample or a subject. It is understood that when said inhibitory amount of a compound of the present invention is administered to a subject it will be at a reasonable benefit/risk ratio applicable to any medical treatment as determined by a physician.
  • biological sample(s),” as used herein means a substance of biological origin, which may be intended for administration to a subject. Examples of biological samples include, but are not limited to, blood and components thereof such as plasma, platelets, subpopulations of blood cells and the like; organs such as kidney, liver, heart, lung, and the like; sperm and ova; bone marrow and components thereof; or stem cells.
  • another embodiment of the present invention is a method of treating a biological sample by contacting said biological sample with an inhibitory amount of a compound or pharmaceutical composition of the present invention.
  • a maintenance dose of a compound, composition or combination of this invention may be administered, if necessary. Subsequently, the dosage or frequency of administration, or both, may be reduced, as a function of the symptoms, to a level at which the improved condition is retained when the symptoms have been alleviated to the desired level, treatment should cease.
  • the subject may, however, require intermittent treatment on a long-term basis upon any recurrence of disease symptoms.
  • the total daily usage of the compounds and compositions of the present invention will be decided by the attending physician within the scope of sound medical judgrient.
  • the specific inhibitory dose for any particular patient will depend upon a variety of factors including the disorder being treated and the severity of the disorder; the activity of the specific compound employed; the specific composition employed; the age, body weight, general health, sex and diet of the patient; the time of administration, route of administration, and rate of excretion of the specific compound employed; the duration of the treatment; drugs used in combination or coincidental with the specific compound employed; and like factors well known in the medical arts.
  • the total daily inhibitory dose of the compounds of this invention administered to a subject in single or in divided doses can be in amounts, for example, from 0.01 to 50 mg/kg body weight or more usually from 0.1 to 25 mg/kg body w eight.
  • Single dose compositions may contain such amounts or submultiples thereof to make up the daily dose.
  • treatment regimens according to the present invention comprise administration to a patient in need of such treatment from about 10 mg to about 1000 mg of the compound(s) of this invention per day in single or multiple doses.
  • the treatment regimen comprises administration to a patient in need of such treatment from about 25 mg to about 6000 mg of a compound(s) of this invention per day in single or multiple doses, either with or without a cytochrome P450 monooxygenase inhibitor such as ritonavir.
  • the suitable daily dose for the co-administered cytochrorne P450 monooxygenase inhibitor can range, without limitation, from 10 to 200 mg.
  • a compound(s) of the present invention, or a combination of a compound(s) of the invention and ritonavir is administered once daily or twice daily to achieve the desired daily dose amount.
  • a compound of the present invention when used without ritonavir, can be administered to a patient twice a day with a total daily dose of 4000, 4200, 4400, 4600, 4800 or 5000 mg.
  • a compound of the present invention when used in combination with ritonavir, can be administered to a patient once or twice a day with a total daily dose of 200, 400, 600 or 800 mg, where the amount of ritonavir can be 25, 50 or 100 mg per administration.
  • the compounds described herein contain one or more asymmetric centers and thus give rise to enantiomers, diastereomers, and other stereoisomeric forms that may be defined, in terms of absolute stereochemistry, as (R)— or (S)—, or as (D)- or (L)- for amino acids.
  • the present invention is meant to include all such possible isomers, as well as their racemic and optically pure forms.
  • Optical isomers may be prepared from their respective optically active precursors by the procedures described above, or by resolving the racernic mixtures. The resolution can be carried out in the presence of a resolving agent, by chromatography or by repeated crystallization or by some combination of these techniques which are known to those skilled in the art.
  • the synthesized compounds can be separated from a reaction mixture and further purified by a method such as column chromatography, high pressure liquid chromatography, or recrystallization.
  • a method such as column chromatography, high pressure liquid chromatography, or recrystallization.
  • further methods of synthesizing the compounds of the formulae herein will be evident to those of ordinary skill in the art.
  • the various synthetic steps may be performed in an alternate sequence or order to give the desired compounds.
  • the solvents, temperatures, reaction durations, etc. delineated herein are for purposes of illustration only and one of ordinary skill in the art will recognize that variation of the reaction conditions can produce the desired bridged macrocyclic products of the present invention.
  • Synthetic chemistry transformations and protecting group methodologies useful in synthesizing the compounds described herein are known in the art and include, for example, those such as described in R. Larock, Comprehensive Organic Transformations , VCR Publishers (1989); T.W. Greene and P.G.M. Wuts, Protective Groups in Organic Synthesis , 2d. Ed., John Wiley and Sons (1991); L. Fieser and M. Fieser, Fieser and Fieser's Reagents for Organic Synthesis , John Wiley and Sons (1994); and L. Paquette, ed., Encyclopedia of Reagents for Organic Synthesis , John Wiley and Sons (1995), and subsequent editions thereof
  • the compounds of this invention may be modified by appending various functionalities via any synthetic means delineated herein to enhance selective biological properties.
  • modifications are known in the art and include those which increase biological penetration into a given biological system (e.g., blood, lymphatic system, central nervous system), increase oral availability, increase solubility to allow administration by injection, alter metabolism and alter rate of excretion.
  • the chemical structures herein contain certain —NH—, —NH 2 (amino) and OH (hydroxyl) groups where the corresponding hydrogen atom(s) may not explicitly appear; however they are to be read as —NH—, —NH 2 or —OH as the case may be.
  • N-ethyl-N-isopropylpropan-2-amine (2.83 ml, 16.2 mmol) and 1-methylimidazole (0.097 ml, 1.2 mmol) followed by benzoic anhydride (1.83 g, 8.10 mmol).
  • the solution was stirred at room temperature for 16 h, DMAP (9.3 mg, 0.076 mmol) was added and the reaction mixture stirred for 2.5 h.
  • the reaction mixture was diluted with ethyl acetate (150 ml) and washed with HCl (1 N, 50 ml ⁇ 2), water and brine.
  • the mixture was stirred at 0° C. for 20 min and then at room temperature for 20 min.
  • the reaction mixture was quenched by adding water (70 ml) dropwise at 0° C. followed by the addition of sodium perborate tetrahydrate (2.92 g, 19.0 mmol).
  • the mixture was stirred at room temperature overnight.
  • the reaction mixture was diluted with ethyl acetate (300 ml) and washed with water (50 ml ⁇ 2) and brine (50 ml).
  • the combined aqueous layer was back-extracted with ethyl acetate (75 ml ⁇ 2).
  • the organic layers were dried (anhydrous sodium sulfate) and concentrated to give a white foamy solid (3.2 g).
  • reaction mixture was stirred at room temperature overnight, diluted with ethyl acetate and cooled to 0° C.
  • the reaction mixture was neutralized with HCl (4 N in dioxane, 25 ⁇ l; diluted with ethyl acetate), stirred at room temperature and dried over anhydrous sodium sulfate.
  • reaction mixture was stirred at room temperature overnight, diluted with ethyl acetate, cooled to 0° C. and neutralized with HCl (4 N in dioxane, 22 ⁇ l; diluted with ethyl acetate).
  • Example 2 provided an IC 50 of >1.0 nM in a 1a enzyme assay; an IC 50 of >1.0 nM in a 1b enzyme assay; a HLM stability value of ⁇ 50 ⁇ l/min/mg; an EC 50 of >5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC 50 of >5.0 nM in a replicon cell line assay in a 1b con1 background.
  • Example 3a was prepared according to the procedure utilized for the preparation of Example if, replacing 2-quinoxalinol with 3-methyl-2-quinoxalinol.
  • Example 3b was prepared according to the procedure utilized for the preparation of Example 1 g, replacing the product of Example 1 f with the product of Example 3a.
  • Example 3 provided an IC 50 of between 0.1 and 0.5 nM in a 1a enzyme assay; and an IC 50 of between 0.1 and 0.5 nM in a 1b enzyme assay.
  • Example 4a was prepared according to the procedure utilized for the preparation of Example 2a, replacing the product of Example 1 with the product of Example 3.
  • Example 4 provided an IC 50 of between 0.1 and 0.5 nM in a 1a enzyme assay; an IC 50 of between 0.5 and 1.0 nM in a 1b enzyme assay; a FILM stability value of ⁇ 50 ⁇ l/min/mg; an EC 50 of >5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC 50 of between 1.0 and 2.0 nM in a replicon cell line assay in a 1 b-con1 background.
  • Example 5a was prepared according to the procedure utilized for the preparation of Example if, replacing 2-quinoxalinol with 3-phenyl-2-quinoxalinol.
  • Example 5b was prepared according to the procedure utilized for the preparation of Example 1 g, replacing the product of Example if with the product of Example 5a.
  • Example 5 provided an IC 50 of between 0.5 and 1.0 MV in a 1a enzyme assay; and an IC 50 of between 0.5 and 1.0 nM in a 1b enzyme assay.
  • Example 6a was prepared according to the procedure utilized for the preparation of Example 2a, replacing the product of Example 1 with the product of Example 5.
  • Example 6 provided an IC 50 of ⁇ 0.1 nM in a 1a enzyme assay; an IC 50 of between 0.1 and 0.5 nM in a 1b enzyme assay; a HLM stability value of ⁇ 50 ⁇ l/min/mg; an EC 50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC 50 of between 1.0 and 2.0 nM in a replicon cell line assay in a 1b-con1 background.
  • reaction mixture was diluted with ethyl acetate and water, and the resulting organic layer was washed with saturated aqueous sodium chloride solution, separated, dried over anhydrous magnesium sulfate, filtered, and the solvent evaporated under reduced pressure.
  • the residue was purified via flash chromatography on silica gel (10-20% acetone/hex).
  • reaction mixture was washed with 1 N aqueous sodium bicarbonate solution followed by 1 N HCl and organic layer was separated, dried over anhydrous sodium sulfate, filtered and evaporated under reduced pressure. The residue was purified by flash chromatography on silica gel (5% methanol/dichloromethane).
  • Example 7 provided an IC 50 of between 0.5 and 1.0 nM in a 1a enzyme assay; an IC 50 of between 0.1 and 0.5 nM in a 1b enzyme assay; a HLM stability value of >100 ⁇ l/min/mg; an EC 50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC 50 of between 1.0 and 2.0 nM in a replicon cell line assay in a 1b-con1 background.
  • Example 8 provided an IC 50 of between 0.1 to 0.5 nM in a 1a enzyme assay; an IC 50 of between 0.1 to 0.5 nM in a 1b enzyme assay; a HLM stability value of >100 ⁇ l/min/mg; an EC 50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC 50 of between 1.0 and 2.0 nM in a replicon cell line assay in a 1b-con1 background.
  • Example 9a was prepared according to the procedure utilized for the preparation of Example 2a, replacing the product of Example 1 with the product of Example 7.
  • Example 9 provided an IC 50 of between 0.5 and 1.0 nM in a 1a enzyme assay; an IC 50 of between 0.1 and 0.5 nM in a 1b enzyme assay; a FILM stability value of ⁇ 50 ⁇ l/min/mg; an EC 50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC 50 of between 1.0 and 2.0 nM in a replicon cell line assay in a 1b-con1 background.
  • Example 10a was prepared according to the procedure utilized for the preparation of Example 2a, replacing the product of Example 1 with the product of Example 8.
  • Example 10 provided a HLM stability value of ⁇ 50 ⁇ l/min/mg; an EC 50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC 50 of between 1.0 and 2.0 nM in a replicon cell line assay in a 1b-con1 background.
  • Example 11 provided an IC 50 of between 0.1 and 0.5 nM in a 1a enzyme assay; an IC 50 of between 0.1 and 0.5 nM in a 1b enzyme assay; a FILM stability value of ⁇ 50 ⁇ l/min/mg; an EC 50 of >5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC 50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1b-con1 background.
  • Example 12 provided an IC 50 of between 0.5 and 1.0 nM in a 1a enzyme assay; an IC 50 of between 0.5 and 1.0 nM in a 1b enzyme assay; a HLM stability value of ⁇ 50 ⁇ l/min/mg; an EC 50 of >5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC 50 of >5.0 nM in a replicon cell line assay in a 1b-con1 background.
  • Example 14 provided an IC of between 0.1 and 0.5 nM in a 1a enzyme assay; an IC 50 of between 0.1 and 0.5 nM in a 1b enzyme assay; a HLM stability value of ⁇ 50 ⁇ l/min/mg; an EC 50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC 50 of between 1.0 and 2.0 nM in a replicon cell line assay in a 1b-con1 background.
  • Example 16 provided an IC 50 of between 0.1 and 0.5 nM in a 1a enzyme assay; an IC 50 of between 0.1 and 0.5 nM in a 1b enzyme assay; a HUM stability value of between 50 and 100 ⁇ l/min/mg; an EC 50 of between 1.0 and 2.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC 50 of ⁇ 1.0 nM in a replicon cell line assay in a 1b-con1 background.
  • Example 17 provided an IC 50 of between 0.1 and 0.5 nM in a 1a enzyme assay; an IC 50 of ⁇ 0.1 nM in a 1b enzyme assay; a FILM stability value of ⁇ 50 ⁇ l/min/mg; an EC 50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC 50 of ⁇ 1.0 nM in a replicon cell line assay in a 1b-con1 background.
  • the mixture was stirred at 50° C. for 2 h, the solvent was evaporated under reduced pressure, and the residue partitioned between water and ethyl acetate. The aqueous layer was separated, diluted with ethyl acetate, and washed with 1N HCl.
  • the reaction mixture was stirred for 20 min at ⁇ 60° C., and triethylamine (0.123 ml, 0.882 mmol) was added dropwise.
  • the mixture was stirred at ⁇ 60° C. for 5 min, and allowed to warm to room temperature with stirring for 10 min.
  • the reaction mixture was quenched with water, stirred for 15 min, and diluted with dichloromethane.
  • the organic layer was separated, dried over anhydrous sodium sulfate, filtered, and evaporated under reduced pressure to give a foamy material.
  • Example 18 provided a HLM stability value of between 50 and 100 ⁇ l/min/mg; an EC 50 of ⁇ 1.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC 50 of ⁇ 1.0 nM in a replicon cell line assay in a 1b-con1 background.
  • the mixture was cooled to 0° C. and sodium hydroxide (11.5 ml, 28.6 mmol) was added dropwise followed by hydrogen peroxide (4.0 ml, 43 mmol), and the reaction mixture stirred for 1.5 h at 0° C.
  • the mixture was diluted with ethyl acetate and water, and the organic layer was washed with saturated aqueous sodium chloride solution.
  • the reaction mixture was stirred for 20 min ⁇ 60° C., and triethylamine (1.716 ml, 12.31 mmol) was added. The mixture was stirred for 10 min at ⁇ 60° C., and then stirred for another 20 min at room temperature. The reaction mixture was quenched with water and stirred for 15 mm, and diluted with dichloromethane. The organic layer was separated, dried over anhydrous sodium sulfate, filtered, and evaporated under reduced pressure to give a foamy material. The crude product was purified by flash chromatography on silica gel (5% methanolldichloromethane).
  • reaction mixture was dissolved in 2 mL dichloromethane and added dropwise into a cooled solution of saturated aqueous sodium carbonate solution, stirred for 10 min, and extracted with dichloromethane. The organic layer was dried over anhydrous sodium sulfate, filtered, and evaporated under reduced pressure.
  • Example 19 provided an IC 50 of ⁇ 0.1 nM in a 1a enzyme assay; an IC 50 of ⁇ 0.1 0 nM in a 1b enzyme assay; a HLM stability value of >100 ⁇ l/min/mg; an EC 50 of ⁇ 1.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC 50 of ⁇ 1.0 nM in a replicon cell line assay in a 1b-con1 background.
  • Example 20a (2R,6S,13aS,14aR,16aS)-6-amino-N-(cyclopropylsulfonyl)-12,12-difluoro-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopenta decine-14a-carboxamide
  • Example 20 provided a HLM stability value of ⁇ 50 ⁇ l/min/mg; an EC 50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC 50 of between 1.0 and 2.0 nM in a replicon cell line assay in a 1 b-con1 background.
  • Example 21 provided a FILM stability value of ⁇ 50 ⁇ l/min/mg; an EC 50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC 50 of ⁇ 1.0 nM in a replicon cell line assay in a 1b-con1 background.
  • the substrate is labeled with a fluor and a fluorescence quencher. Cleavage results in release of the quencher and an increase in fluorescence.
  • NS3 protease is incubated with a dilution series of inhibitor in 150 mM NaCl, 10% Glycerol, 5 mM. DTT, with or without 0.01% dodecyl maltoside for either 30 minutes or 300 minutes. Substrate is added at a concentration of 5 uM to initiate the reaction, and fluorescence is measured at 2 minute intervals for 30 minutes. Enzyme concentrations range from 10 to 100 nM in the absence of detergent, or 10-fold lower in the presence of detergent.
  • Substrate peptides are labeled with either EDANS and DABCYL (excitation 355 nm, emission 485 nm) or TAMRA and QSY (excitation 544 nm, emission 590 nm).
  • EDANS and DABCYL excitation 355 nm, emission 485 nm
  • TAMRA and QSY excitation 544 nm, emission 590 nm.
  • 3-fold serial dilutions starting with initial concentrations of 100 ⁇ M, 200 ⁇ M, or 2 mM are used.
  • K i values approaching or lower than the enzyme concentration
  • K i values are calculated using the tight binding assay format, according to the following equation:
  • V A ⁇ [( K+I ⁇ E ) 2 +4 KE ]) 1/2 ⁇ ( K+I ⁇ E ) ⁇ ,
  • genotype 1a Two subgenomic replicon cell lines can be used for compound characterization in cell culture: one derived from genotype 1a and one derived from genotype 1 b. Both replicon constructs are bicistronic subgenomic replicons essentially similar to those described by Bartenschlager and coworkers (Lohmann et al., Science (1999) 285(5424):110-113).
  • the genotype 1a replicon construct contains the NS3-NS5B coding region derived from the H77 strain of HCV (1a-H77) (Blight et al. J Virol (2003) 77(5):3181-3190).
  • the first cistron of the construct consists of the first 36 nucleotides of the HCV1a-H77 core gene fused to a firefly luciferase reporter and a neomycin phosphotransferase (Neo) selectable marker.
  • the luciferase and Neo coding regions are separated by the FMDV 2a protease.
  • the second cistron contains the NS3-NS5B coding region derived from 1a-H77 with the addition of adaptive mutations E1202G in NS3, K1691R in NS4A, and K2040R and S2204I in NS5A.
  • the 1b-Con-1 replicon construct is identical to the 1a-H77 replicon, except that the 5′ and 3′ NTRs and the NS3-NS5B coding region can be derived from the 1b-Con-1 strain (Blight et al., Science (2000) 290(5498):1972-1974), and the adaptive mutations are E1202G and T12801 in NS3 and S2204I in NS5A.
  • Replicon cell lines can be maintained in Dulbecco's modified Eagles medium (DMEM) containing 100 IU/ml penicillin, 100 mg/ml streptomycin (Invitrogen), 200 mg/ml G418 (Invitrogen) and 10% (v/v) fetal bovine serum (FBS).
  • DMEM Dulbecco's modified Eagles medium
  • FBS fetal bovine serum
  • Replicon-containing cells can be seeded into 96 well plates at a density of 5000 cells per well in 100 ⁇ l DMEM containing 5% FBS.
  • the compound can be initially diluted in dimethyl sulfoxide (DMSO) to generate a 200 ⁇ stock of the inhibitor in a series of 8 half-log dilutions.
  • DMSO dimethyl sulfoxide
  • the dilution series can then be diluted 100-fold in the medium containing 5% FBS.
  • One hundred microliters of medium with the inhibitor can be added to each well of the overnight cell culture plate already containing 100 ⁇ l of DMEM with 5% FBS.
  • the medium from the overnight cell culture plates can be replaced with 200 ⁇ l DMEM containing 40% human plasma (innovative Research) plus 5% FBS as well as compound.
  • the cells can be grown for 4 days in tissue culture incubators.
  • the inhibitory effects of compounds against the replicons can be determined by measuring either the level of luciferase or HCV RNA.
  • the luciferase assay can be conducted using a Luciferase Assay System kit (Promega) following the manufacturer's instructions. Briefly, the cell culture medium is removed and wells are washed with 200 ⁇ l of phosphate-buffered saline. To each well Passive Lysis buffer (Promega, WI) is added and the plates are incubated for 30 min with rocking to lyse the cells. Luciferin solution (50 ⁇ l, Promega) is added, and luciferase activity is measured with a Victor II luminometer (Perkin-Elmer).
  • Luciferin solution 50 ⁇ l, Promega
  • RNA extractions can be performed using the CellsDirect kit (Invitrogen), and the HCV RNA copy number can be measured using the SuperScript III Platinum One-Step qRT-PCR system (Invitrogen) and primers specific to the HCV 5′ nontranslated region.
  • Cytotoxicity can be determined by the 3-[4,5-dimethythiazol-2-yl]-2,5-diphenyltetrazolium bromide (MTT) colorimetric assay as follows. Replicon cells is plated in 96-well plates (4000 cells per well), the next day compound dilutions are added as in the activity assay, and the cells are grown in the presence of the inhibitors for 4 days.
  • MTT 3-[4,5-dimethythiazol-2-yl]-2,5-diphenyltetrazolium bromide
  • the MTT solution is diluted in DMEM containing 5% FBS and 60 ⁇ l of the solution is added to the cells. After 4 hrs, the cells are solubilized by the addition of 30 ⁇ l SDS (20% in 0.02 N HCl). The plates are incubated overnight and the optical density can be measured at 570 nm. To determine compounds' EC 50 and TD 50 , luciferase, RNA inhibition and MTT data can be analyzed using the GraphPad Prism 4 software (equation: sigmoidal dose-response variable slope).
  • Mutations detected in resistance selection studies can be introduced into wild type transient replicon constructs based on genotypes 1a-H77 and 1b-N. Both replicons are bicistronic sub-genomic constructs containing a firefly luciferase reporter similar to those described above, but they do not contain a Neo selectable marker and are therefore only suitable for transient replication assays.
  • the 1a-H77 replicon for transient assays further differs from the replicon in the stable cell line in that it contains NS2 through NS5B in the second cistron.
  • the 1b-N strain replicon contains NS3 through NS5B in the second cistron, with adaptive mutations E1202G in NS3 and S2204I in NS5A.
  • Mutagenesis can be performed using the Stratagene QuikChange XL 11 site-directed mutagenesis kit. Mutants' sequences can be confirmed, plasmids can be linearized with Xba I restriction enzyme and used as template for in vitro transcription reactions to make mutant replicon RNA for transient transfections. In vitro transcription can be performed with the T7 Megascript kit (Ambion).
  • Transient replicon transfections can be performed essentially as described by Mo et al. ( Antimierob Agents Chemother (2005) 49(10):4305-4314) with slight modifications. Fifteen micrograms of template RNA can be used to electroporate 3 ⁇ 10 6 cells in a 200 ⁇ l volume in a 0.2 cm cuvette. The cells used for transient transfections can be Huh7 cells obtained by curing replicon-containing cells with IFN (Mo et al., supra). Electroporation can be done with a Gene Pulser II (Bio-Rad, CA) at 480V and 25 ⁇ F, using two manual pulses.
  • Gene Pulser II Bio-Rad, CA
  • Transfected cells can be diluted to 7.5 ⁇ 10 cells/ml and plated in 96 well plates at 7.5 ⁇ 10 3 cells per well in DMEM with 5% FBS and 100 IU/ml penicillin, 100 mg/ml streptomycin (Invitrogen). Four hours post-transfection, one plate is harvested for luciferase measurement; this plate may provide a measure of the amount of input RNA that can be translated, and thus of transfection efficiency. To the remaining plates, test compound serial dilutions in DMSO can be added (0.5% DMSO final concentration), and plates are incubated for 4 days.
  • Exemplary compounds of the present invention were tested for their anti-HCV activities. Many of the compounds tested showed unexpected anti-HCV activities, including excellent activities in biochemical assays against HCV proteases representing various HCV genotypes, superior activities in standard HCV replicon assays including activity against 1a-H77 and 1b-con1 HCV strains in the absence or presence of 40% human plasma, and/or excellent activities in transient replicon assays against drug-resistant mutants in a number of different HCV genetic backgrounds.

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Abstract

The present invention relates to novel fluorinated macrocyclic compounds and methods of treating a hepatitis C infection in a subject in need of such therapy with said macrocyclic compounds. The present invention further relates to pharmaceutical compositions comprising the compounds of the present invention, or pharmaceutically acceptable salts, esters, or prodrugs thereof, in combination with a pharmaceutically acceptable carrier or excipient.

Description

    RELATED APPLICATIONS
  • This application claims the benefit of U.S. Provisional application 61/428,446, filed on Dec. 30, 2010. The entire contents of the above application are incorporated herein by reference.
    • JOINT RESEARCH AGREEMENT
  • Inventions described in this application were made by or on behalf of Abbott Laboratories and Enanta Pharmaceuticals, Inc. whom are parties to a joint research agreement, that was in effect on or before the date such inventions were made and such inventions were made as a result of activities undertaken within the scope of the joint research agreement.
    • TECHNICAL FIELD
  • The present invention relates to novel fluorinated macrocycles having activity against the hepatitis C virus (HCV) and useful in the treatment of HCV infections. More particularly, the invention relates to macrocyclic compounds, compositions containing such compounds and methods for using the same, as well as processes for making such compounds.
    • BACKGROUND OF THE INVENTION
  • HCV is the principal cause of non-A, non-B hepatitis and is an increasingly severe public health problem both in the developed and developing world. It is estimated that the virus infects over 200 million people worldwide, surpassing the number of individuals infected with the human immunodeficiency virus (HIV) by nearly five fold. HCV infected patients, due to the high percentage of individuals inflicted with chronic infections, are at an elevated risk of developing cirrhosis of the liver, subsequent hepatocellular carcinoma and terminal liver disease. HCV is the most prevalent cause of hepatocellular cancer and cause of patients requiring liver transplantations in the western world.
  • There are considerable barriers to the development of anti-HCV therapeutics, which include, but are not limited to, the persistence of the virus, the genetic diversity of the virus during replication in the host, the high incident rate of the virus developing drug-resistant mutants, and the lack of reproducible infectious culture systems and small-animal models for HCV replication and pathogenesis. In a majority of cases, given the mild course of the infection and the complex biology of the liver, careful consideration must be given to antiviral drugs, which often have significant side effects.
    • SUMMARY OF THE INVENTION
  • The present invention relates to novel macrocyclic compounds and methods of treating a hepatitis C infection in a subject in need of such therapy with said macrocyclic compounds. The compounds of the present invention interfere with the life cycle of the hepatitis C virus and are useful as antiviral agents. The present invention further relates to pharmaceutical compositions comprising the compounds of the present invention, or pharmaceutically acceptable salts, esters or prodrugs thereof, in combination with a pharmaceutically acceptable carrier or excipient.
  • In one aspect, the invention provides a compound of formula I:
  • Figure US20150119319A1-20150430-C00001
  • or pharmaceutically acceptable salts, esters, hydrates, solvates, polymorphs, or prodrugs thereof,
  • wherein:
  • X is an optionally substituted carbocyclic, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl;
      • Z is O, S(O)m, NRx, OC(O), C(O), C(O)O, NRxC(O), or C(O)NRx;
      • each Rx is independently H or alkyl;
  • J is —C(O)—, —O—C(O)—, —C(O)O—, —N(R3)—C(O)—, —C(S)—, —C(═NR4)—, —S(O)—, or —S(O2)— or absent;
  • A is selected from the group consisting of the following:
      • (i) H, aryl; substituted aryl; heteroaryl; substituted heteroaryl;
      • (ii) heterocyclyl or substituted heterocyclyl; and
      • (iii) —C1-C8 alkyl, —C2-C8 alkenyl or —C2-C8 alkynyl, each containing 0, 1, 2, or 3 heteroatoms independently selected from O, S, and N; substituted —C1-C8 alkyl, substituted —C2-C8 alkenyl or substituted —C2-C8 alkynyl, each containing 0, 1, 2, or 3 heteroatoms independently selected from O, S and N; —C3-C12 carbocyclic, substituted —C3-C12 carbocyclic; —C3-C12 cycloalkenyl, or substituted —C3-C12 cycloalkenyl;
  • E is -G-R5;
      • wherein G is absent; optionally substituted alkylene, optionally substituted alkenylene, optionally substituted alkynylene, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N;
      • or —O—, —S—, —N(R3)—, —N(R3)S(Op)—, —N(R3)C(O)—, —N(R3) C(O)S(Op)—, —OS(Op)—, —C(O)S(Op)—, or —C(O)N(R3)S(Op)—;
      • each p is independently 0, 1, or 2;
      • R5 is H; optionally substituted alkyl, optionally substituted alkenyl, or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted carbocyclic, optionally substituted heterocyclic, optionally substituted aryl, or optionally substituted heteroaryl;
  • Figure US20150119319A1-20150430-P00001
    denotes a carbon-carbon single or double bond (i.e.,
  • Figure US20150119319A1-20150430-C00002
  • means
  • Figure US20150119319A1-20150430-C00003
  • each of Ra, Rb, Rc, and Rd are each independently H or halo, wherein at least two of Ra, Rb, Rc, and Rd are halo; and Rb and Rd are absent if
    Figure US20150119319A1-20150430-P00001
    is a double bond
  • each R3 and R4 is independently selected at each occurrence from the following: H, optionally substituted alkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; and optionally substituted carbocyclic;
  • L is absent or a C2-C5 saturated or unsaturated chain, optionally containing one to three heteroatoms independently selected from O, N and S(O)q, wherein L is optionally substituted with one or more substituents selected from halogen, hydroxy, mercapto, amino, carboxy, nitro, oxo, phosphonoxy, phosphono, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl and C2-C6alkynyl, wherein each C1-C6alkyl, C2-C6alkenyl and C2-C6alkynyl, group is optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, carboxy, nitro, oxo, phosphonoxy, phosphono, thioxo, formyl and cyano;
  • j=independently 0, 1, 2, 3, or 4;
  • k=independently 0, 1, 2, or 3;
  • each m is independently 0, 1, or 2; and
  • q is independently 0, 1, or 2.
  • The present invention also features the compounds of Formula I′, and pharmaceutically acceptable salts, esters, hydrates, solvates, polyrnorphs, or prodrugs thereof,
  • Figure US20150119319A1-20150430-C00004
  • wherein Z, X, A, L, R3, J, E, j, k, Ra, Rb, Rc, and Rd, are as defined in Formula I.
  • In another aspect, the invention provides a pharmaceutical composition comprising a compound of any of the formulae herein (e.g., Formula I or I′), or a pharmaceutically acceptable salt, ester, or prodrug thereof, in combination with an excipient.
  • In one aspect, the invention provides a method of treating a viral infection in a subject, comprising administering to the subject a therapeutically effective amount of a compound of any of the formulae herein (e.g., Formula I or I′, or a pharmaceutically acceptable salt, ester or prodrug thereof; or a pharmaceutical composition comprising the same.
    • DESCRIPTION OF THE INVENTION
  • In one aspect, the invention provides a compound of formula I:
  • Figure US20150119319A1-20150430-C00005
  • or pharmaceutically acceptable salts, esters, hydrates, solvates, polymorphs, or prodrugs thereof,
  • wherein:
  • X is an optionally substituted carbocyclic, optionally substituted heterocycyl, optionally substituted aryl, or optionally substituted heteroaryl;
      • Z is O, S(O)m, NRA, OC(O), C(O), C(O)O, NRxC(O), or C(O)NRx;
      • each Rx is independently H or alkyl;
  • J is —C(O)—, —O—C(O)—, —C(O)O—, —N(R3)—C(O)—, —C(S)—, —C(═NR4)—, N(R3)—, —S(O)—, or —S(O2)— or absent;
  • A is selected from the group consisting of the following:
      • (i) H, aryl; substituted aryl; heteroaryl; substituted heteroaryl;
      • (ii) heterocyclyl or substituted heterocyclyl; and
      • (iii) —C1-C8 alkyl, —C2-C8 alkenyl or —C2-C8 alkynyl, each containing 0, 1, 2, or 3 heteroatoms independently selected from O, S, and N; substituted —C1-C8 alkyl, substituted —C2-C8 alkenyl or substituted —C2-C8 alkynyl, each containing 0, 1, 2, or 3 heteroatoms independently selected from O, S and N; —C3-C12 carbocyclic, substituted —C3-C12 carbocyclic; —C3-C12 cycloalkenyl, or substituted —C1-C12 cycloalkenyl;
  • E is -G-R5;
      • wherein G is absent; optionally substituted alkylene, optionally substituted alkenylene, optionally substituted alkynylene, each containing 0, 1, or 3 heteroatoms selected from O, S, or N;
      • or —O—, —S—, —N(R3)—, —N(R3)S(Op)—, —N(R3)C(O)—, —N(R3) C(O)S(O)—, —OS(Op)—, —C(O)S(Op)—, or —C(O)N(R3)S(Op)—;
      • each p is independently 0, 1, or 2;
      • R5 is U; optionally substituted alkyl, optionally substituted alkenyl, or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted carbocyclic, optionally substituted heterocyclic, optionally substituted aryl, or optionally substituted heteroaryl;
  • Figure US20150119319A1-20150430-P00001
    denotes a carbon-carbon single or double bond (i.e.,
  • Figure US20150119319A1-20150430-C00006
  • means
  • Figure US20150119319A1-20150430-C00007
  • each of Ra, Rb, Rc, and Rd are each independently H or halo, wherein at least two of Ra, Rb, Rc, and Rd are halo; and Rb and Rd are absent if
    Figure US20150119319A1-20150430-P00001
    is a double bond
  • each R3 and R4 is independently selected at each occurrence from the following: H, optionally substituted alkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; and optionally substituted carbocyclic;
  • L is absent or a C2-C5 saturated or unsaturated chain, optionally containing one to three heteroatoms independently selected from O, N and S(O)q, wherein L is optionally substituted with one or more substituents selected from halogen, hydroxy, mercapto, amino, carboxy, nitro, oxo, phosphonoxy, phosphono, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl and C2-C6alkynyl, wherein each C1-C6alkyl, C2-C6alkenyl and C2-C6alkynyl, group is optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, carboxy, nitro, oxo, phosphonoxy, phosphono, thioxo, formyl and cyano;
  • j=independently 0, 1, 2, 3, or 4;
  • k=independently 0, 1, 2, or 3;
  • each m is independently 0, 1, or 2; and
  • q is independently 0, 1, or 2.
  • The present invention also features the compounds of Formula I′, and pharmaceutically acceptable salts, esters, hydrates, solvates, polymorphs, or prodrugs thereof,
  • Figure US20150119319A1-20150430-C00008
  • wherein Z, X, A, L, R3, J, E, j, k, in, Ra, Rb, Rc, and Rd, are as defined in Formula I.
  • In certain embodiments, Z is O or OC(O); and ring X is cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, adamantyl, cyclooctyl, [3.3.0]bicyclooctanyl, [4.3.0]bicyclononanyl, [4.4.0]bicyclodecanyl, [2.2.2]bicyclooctanyl, fluorenyl, phenyl, naphthyl, indanyl, tetrahydronaphthyl, acridinyl, azocinyl, benzimidazolyl, benzofuranyl, benzothiofuranyl, benzothiophenyl, benzoxazolyl, benzthiazolyl, benztriazolyl, benztetraz benzisoxazolyl, benzisothiazolyl, benzimidazolinyl, carbazolyl, NH-carbazolyl, carbolinyl, chromanyl, chromenyl, cinnolinyl, decahydroquinolinyl, 2H,6H-1,5,2-dithiazinyl, dihydrofuro [2,3-h]tetrahydrofuran, furanyl, furazanyl, imidazolidinyl, imidazolinyl, imidazolyl, 1H-indazolyl, indolenyl, indolinyl., indolizinyl, indolyl, isoindolinyl, isoindolenyl, isobenzofuranyl, isochromanyl, isoindazolyl, isoindolinyl, isoindolyl, isoquinolinyl, isothiazolyl, isoxazolyl, morpholinyl, naphthyridinyl, octahydroisoquinolinyl, oxadiazolyl, 1,2,3-oxadiazolyl, 1,2,4-oxadiazolyl; 1,2,5oxadiazolyl, 1,3,4-oxadiazolyl, oxazolidinyl, oxazolyl, oxazolidinyl, pyrimidinyl, phenanthridinyl, phenanthrolinyl, phenazinyl, phenothiazinyl, phenoxathiinyl, phenoxazinyl, phthalazinyl, piperazinyl, piperidinyl, pteridinyl, purinyl, pyranyl, pyrazinyl, pyrazolidinyl, pyrazolinyl, pyrazolyl, pyridazinyl, pyridooxazole, pyridoimidazole, pyridothiazole, pyridinyl, pyridyl, pyrimidinyl, pyrrolidinyl, pyrrolinyl, pyrrolyl, quinazolinyl, quinolinyl, 4H-quinolizinyl, quinoxalinyl, quinuclidinyl, tetrahydrofuranyl, tetrahydroisoquinolinyl, tetrahydroquinolinyl, 6H-1,2,5-thiadiazinyl, 1,2,3-thiadiazolyl, 1,2,4-thiadiazolyl, 1,3,4thiadiazolyl, thianthrenyl, thiazolyl, thienyl, thienothiazolyl, thienooxazolyl, thienoimidazolyl, thiophenyl, triazinyl, 1,2,3-triazolyl, 1,2,4-triazolyl, 1,3,4-triazolyl, or xanthenyl; each of which may be optionally substituted.
  • In a further embodiment, ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl.
  • In a further embodiment, ring X is
  • Figure US20150119319A1-20150430-C00009
  • wherein
  • Y is N or —C(R″)—;
  • wherein if Y is —C(R″)—, then R′ and R″ taken together with the carbon atoms to which they are attached form a ring, which is optionally substituted;
  • R′ is H, alkyl, alkenyl, alkynyl, carbocyclic, heterocyclyl, aryl, or heteroaryl, each of which may be optionally substituted;
  • each R1 is independently selected from halogen, hydroxy, amino, —CN, —CF3, —NO2, —OR4, —SR4, —SOR4, —SO2R4, —N(R3)S(O)2—R4, —N(R3)(SO2)NR3R4, —NR3R4, —C(O)—OR1, —C(O)R4, —C(O)NR3R4, —N(R3)C(O)R4; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; optionally substituted alkyl, optionally substituted haloalkyl, optionally substituted alkenyl, or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N;
  • each n is independently 0, 1, 2, 3, or 4;
  • each R3 and R4 are independently selected at each occurrence from the following: optionally substituted alkyl., optionally substituted haloalkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; or hydrogen; and
      • k is 0, 1, or 2.
  • In another aspect, the invention provides a compound of formula I-A:
  • Figure US20150119319A1-20150430-C00010
  • or a pharmaceutically acceptable salt, ester or prodrug thereof,
  • wherein:
  • J is —C(O)—, —O—C(O)—, N(R3)—C(O)—, —C(S)—, —C(═NR4)—, —N(R3)—, —S(O)—, or —S(O2)— or absent;
  • A is optionally substituted alkyl, optionally substituted heteroaryl, optionally substituted aryl, optionally substituted heterocyclic, or optionally substituted carbocyclic;
  • Y is N or —C(R″)—;
  • R′ is H, optionally substituted alkyl, optionally substituted aryl, optionally substituted heteroaryl; optionally substituted carbocyclic, or optionally substituted heterocyclic; or
  • R′ and R″, together with the atoms to which each is attached, can form a ring;
  • each R1 is independently selected from H, halogen, hydroxy, amino, —CN, —CF3, —N3, —NO2, —OR4, —SR4., —SOR4, —SO2R4, —N(R3)S(O)2—R4, —N(R3)(SO2)NR3R4, —NR3R4, —C(O)—OR4, —C(O)R4, —C(O)NR3R4, —N(R3)C(O)R4; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; optionally substituted alkyl, optionally substituted haloalkyl, optionally substituted alkenyl, or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N;
  • G is —N(R3)S(O)p—; —N(R3)C(O)—, —N(R3)C(O)S(O), —OS(O)p—, —C(O)S(O)p, or —C(O)N(R3)S(O)p—;
  • each p is independently 0, 1, or 2;
  • R5 is FE, optionally substituted alkyl, optionally substituted carbocyclic, optionally substituted heterocyclic, optionally substituted aryl, or optionally substituted heteroaryl; each of R2a, R2b, Ra, and R2d are each independently H or F, wherein at least two of R2a, R2b, R2c, and R2d are F;
  • each R3 and R4 are independently selected at each occurrence from the following: optionally substituted alkyl, optionally substituted haloalkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; or hydrogen;
  • L is absent or is selected from optionally substituted alkylene, optionally substituted alkenylene or optionally substituted alkynylene, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N;
  • j=independently 0, 1, 2, 3, or 4;
  • k=independently 0, 1, 2, or 3;
  • m=independently 0, 1, or 2; and
  • n is independently 0, 1, 2, 3, or 4.
  • In certain embodiments of this aspect, Y is —C(R″)—; and R′ and R″, taken together with the atoms to which each is attached, form a ring.
  • In a further embodiment, the ring formed by R′ and R″ is an optionally substituted an optionally substituted heteroaryl, an optionally substituted carbocyclic or an optionally substituted heterocyclic.
  • In other embodiments, Y is N and R′ is H, optionally substituted alkyl, optionally substituted aryl, or optionally substituted heteroaryl.
  • In certain embodiments, G is —N(R3)S(O)p—; —N(R3)C(O)—, —OS(O)p—, or —C(O)S(O)p—; and p is 2.
  • In a further embodiment, R5 is optionally substituted carbocyclic, optionally substituted heterocyclic, optionally substituted aryl, or optionally substituted heteroaryl. In certain embodiments, R5 is carbocyclic.
  • In various embodiments, R2a and R2h are F. In other embodiments, R2c and R2d are F. In still other embodiments, R2a and R2c are F.
  • In another embodiments, J is —C(O)—, —O—C(O)—, —S(O)—, or —S(O2)—.
  • In other embodiments, A is an optionally substituted alkyl, optionally substituted heteroaryl, or optionally substituted aryl. In certain embodiments, A is heteroaryl or alkyl.
  • In yet another aspect, the invention provides a compound of formula I-A, or a pharmaceutically acceptable salt, ester or prodrug thereof,
  • wherein: Y is —C(R″),
  • R′ and R″, taken together with the atoms to which each is attached, form a phenyl which is optionally substituted with one or more R1;
  • m is 1, j is 2, k is 2, L is absent;
  • J is —C(O)—, —O—C(O)—, N(R3)—C(O)—, —S(O)—, or —S(O2)—;
  • A is optionally substituted alkyl, optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted heteroaryl, optionally substituted aryl, optionally substituted heterocyclic, or optionally substituted carbocyclic;
  • each R1 is independently selected from H, halogen, hydroxy, amino, —CN, —CF3, —N3, —NO2, —OR4, —SR4, —NR3R4, optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; optionally substituted haloalkyl, or optionally substituted alkyl, optionally substituted alkenyl, optionally substituted alkynyl;
  • G is —N(R3)S(O)p—;
  • p is 0, 1, or 2;
  • each of R2a, R2b, R2c and R2d are each independently H or F, wherein at least two of R2a, R2b, R2c, and R2d are F;
  • R5 is optionally substituted carbocyclic or heterocyclic;
  • each R3 and R4 is independently selected at each occurrence from the following: optionally substituted alkyl, optionally substituted haloalkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; or hydrogen; and
  • n is 0, 1, 2, 3, or 4.
  • In one embodiment of this aspect. J is —C(O)—, or —O—C(O)—.
  • In another embodiment of this aspect, A is methyl, ethyl, propyl, iso-propyl, butyl, i-butyl, t-butyl, pentyl, hexyl, heptyl, phenyl, pyridyl, pyrimidyl, pyrazinyl, triazinyl, furanyl, thiophenyl, pyrrolyl, isoxazolyl, or pyrazolyl; each of which may be optionally substituted.
  • In certain embodiments of this aspect, G is —N(R3)S(O)p— and R5 is cyclopropyl, cyclobutyl, cyclopentyl, cyciohexyl, or cycloheptyl, each of which is optionally substituted.
  • In one embodiment of aspect, R2a and R2b are F. In another embodiment, R2a and R2c are F. In another embodiment, R2c and R2d are F.
  • In still another embodiment of this aspect, A-J- is A-C(O)— or A-O—C(O)—; A is Cr C8alkyl, C2-C8alkenyl or C2-C8alkynyl, each of which is optionally substituted with one or more RH, or A is 5- to 6-membered carbocyclic or heterocyclic which is optionally substituted with one or more RG; -G-R5 is —N(R3)S(O)2—R5; and R5 is 3- to 6-membered carbocyclic or heterocyclic which is optionally substituted with one or more RG. Each RH is independently selected at each occurrence from independently selected at each occurrence from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, or cyano; or C1-C6alkyl, C2-C6alkenyl or C2-C6alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in RH is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl, C2-C6alkynyl, C1-C6haloalkyl, C2-C6haloalkenyl or C2-C6haloalkynyl. Each R1 is independently selected at each occurrence from hydrogen or RG. Each RG is independently selected at each occurrence from halo, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano; or C1-C6alkyl, C2-C6alkenyl or C2-C6alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano; or C3-C6carbocycle or 3- to 6-membered heterocycle, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl, C2-C6alkynyl, C1-C6haloalkyl, C2-C6haloalkenyl or C2-C6haloalkynyl. Each R3 is independently selected at each occurrence from hydrogen; or C1-C6alkyl, C2-C6alkenyl or C2-C6alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R3 is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl., C2-C6alkynyl, C1-C6haloalkyl, C2-C6haloalkenyl or C2-C6haloalkynyl. Preferably, R3 is hydrogen.
  • In still another embodiment of this aspect, A-J- is A-C(O)— or A-O—C(O)—; A is 5- to 6-membered aryl or heteroaryl which is optionally substituted with one or more RG; -G-R5 is —N(R3)S(O)2—R5 (preferably —N(H)S(O)2—R5); and R5 is 3- to 6-membered cycloalkyl (preferably cyclopropyl) which is optionally substituted with one or more RG. Each R1 is independently selected at each occurrence from hydrogen or RG. RG is as defined above. Each R3 is independently selected at each occurrence from hydrogen; or C1-C6alkyl, C2-C6alkenyl or C2-C6alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R3 is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl, C2-C6alkynyl, C1-C6haloalkyl, C2-C6haloalkenyl or C2-C6haloalkynyl. Preferably, R3 is hydrogen.
  • In still another aspect, the invention provides a compound of formula I-A, or a pharmaceutically acceptable salt, ester or prodrug thereof, wherein:
  • Y is —C(R″)—;
  • R′ and R″, taken together with the atoms to which each is attached, form a phenyl which is optionally substituted with one or more R1;
      • m is 1, j is 2, k is 2, L is absent;
  • J is —C(O)— or —O—C(O)—;
  • A is optionally substituted alkyl, optionally substituted alkenyl, optionally substituted alkynyl, optionally substituted heteroaryl, optionally substituted aryl, optionally substituted heterocyclic, or optionally substituted carbocyclic;
  • each R1 is independently selected from H, halogen, hydroxy, amino, —CN, —CF3, —N3, —NO2, —OR4, —SR4, —NR3R4, optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; optionally substituted haloalkyl, or optionally substituted alkyl, optionally substituted alkenyl, optionally substituted alkynyl;
  • G is —N(R3)S(O)p—;
  • p is 0, 1., or 2;
  • R5 is optionally substituted carbocyclic or heterocyclic;
  • R2a and R2b are F, and R2 and R2d are H;
  • each R3 and R4 is independently selected at each occurrence from the following: optionally substituted alkyl, optionally substituted haloalkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; or hydrogen; and
  • n is 0, I, 2, 3, or 4.
  • In certain embodiments, A is methyl, ethyl, propyl, iso-propyl, butyl, i-butyl, t-butyl, pentyl, hexyl, heptyl,
  • Figure US20150119319A1-20150430-C00011
  • In another embodiment, R5 is optionally substituted cyclopropyl.
  • In various embodiments, n is 0.
  • In still another embodiment of this aspect, A-J- is A-C(O)— or A-O—C(O)—; A is C1-C8alkyl, C2-C8alkenyl or C2-C8alkynyl, each of which is optionally substituted with one or more RH, or A is 5- to 6-membered carbocyclic or heterocyclic which is optionally substituted with one or more RG; -G-R5 is —N(R3)S(O)2—R5; and R5 is 3- to 6-membered carbocyclic or heterocyclic which is optionally substituted with one or more RG. Each RH is independently selected at each occurrence from independently selected at each occurrence from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, or cyano; or C1-C6alkyl, C2-C6alkenyl or C2-C6alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in RH is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl, C2-C6alkynyl, C1-C6haloalkyl, C2-C6haloalkenyl or C2-C6haloalkynyl. Each R1 is independently selected at each occurrence from hydrogen or RG. Each RG is independently selected at each occurrence from halo, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano; or C1-C6alkyl, C2-C6alkenyl or C2-C6alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano; or C3-C6carbocycle or 3- to 6-membered heterocycle, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl, C2-C6alkynyl, C1-C6haloalkyl, C2-C6haloalkenyl or C2-C6haloalkynyl. Each R3 is independently selected at each occurrence from hydrogen; or C1-C6alkyl, C2-C6alkenyl or C2-C6alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-meinbered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R3 is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl, C2-C6alkynyl, C1-C6haloalkyl, C2-C6haloalkenyl or C2-C6haloalkynyl. Preferably, R3 is hydrogen.
  • In still another embodiment of this aspect, A-J- is A-C(O)— or A-O—C(O)—; A is 5- to 6-membered aryl or heteroaryl which is optionally substituted with one or more RG; -G-R5 is —N(R3)S(O)2—R5 (preferably —N(H)S(O)2—R5); and R5 is 3- to 6-membered cycloalkyl (preferably cyclopropyl) which is optionally substituted with one or more RG. Each R1 is independently selected at each occurrence from hydrogen or RG. RG is as defined above. Each R3 is independently selected at each occurrence from hydrogen; or C1-C6alkyl, C2-C6alkenyl or C2-C6alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R3 is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl, C2-C6alkynyl, C1-C6haloalkyl, C2-C6haloalkenyl or C2-C6haloalkynyl. Preferably, R3 is hydrogen.
  • In a further aspect, the invention provides a compound of formula II:
  • Figure US20150119319A1-20150430-C00012
  • or a pharmaceutically acceptable salt, ester or prodrug thereof,
  • wherein:
  • J is —C(O)—, —O—C(O)—, —N(R3)—C(O)—, —S(O)—, or —S(O2)—;
  • A is optionally substituted alkyl, or optionally substituted heteroaryl, optionally substituted aryl, optionally substituted heterocyclic, or optionally substituted carbocyclic;
  • R′ is H, optionally substituted aryl; optionally substituted heteroaryl; or optionally substituted alkyl;
  • G is —N(R3)S(O)p—;
  • p is 0, 1, or 2;
  • each of R2a, R2b, R2c, and R2d are each independently H or F, wherein at least two of R2a, R2b, R2c, and R2d are F;
  • R5 is optionally substituted carbocyclic, optionally substituted heterocyclic, optionally substituted aryl, or optionally substituted heteroaryl; and
  • each R3 and R4 is independently selected at each occurrence from the following: optionally substituted alkyl, optionally substituted haloalkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; or hydrogen.
  • In certain embodiments, R′ is H, optionally substituted alkyl; optionally substituted aryl; or optionally substituted heteroaryl.
  • In another embodiment, J is —C(O)—, or —O—C(O),
  • In other embodiments, A is methyl, ethyl, propyl, iso-propyl, butyl, i-butyl, t-butyl, pentyl, hexyl, heptyl, phenyl, pyridyl, pyrimidyl, pyrazinyl, triazinyl, furanyl, thiophenyl, pyrrolyl, isoxazolyl, or pyrazolyl; each of which may be optionally substituted.
  • In various embodiments, G is —N(R3)S(O)p— and R5 is cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, or cycloheptyl, each of which is optionally substituted.
  • In another embodiment, R2a and R2b are F. In another embodiment, R2a and R2c, are F. In another embodiment, R2c and R2d are F.
  • In still another embodiment of this aspect, A-J- is A-C(O)— or A-O—C(O)—; A is C1-C8alkyl, C2-C8alkenyl or C2-C8alkynyl, each of which is optionally substituted with one or more RH, or A is 5- to 6-membered carbocyclic or heterocyclic which is optionally substituted with one or more RG; -G-R5 is —N(R3)S(O)2—R5; and R5 is 3- to 6-membered carbocyclic or heterocyclic which is optionally substituted with one or more RG. Each RH is independently selected at each occurrence from independently selected at each occurrence from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, or cyano; or C1-C6alkyl, C1-C6alkenyl or C2-C6alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in RFI is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl, C2-C6alkynyl, C1-C6haloalkyl, C2-C6haloalkenyl or C2-C6haloalkynyl. Each R1 is independently selected at each occurrence from hydrogen or RG. Each RG is independently selected at each occurrence from halo, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano; or C1-C6alkyl, C2-C6alkenyl or C2-C6alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano; or C3-C6carbocycle or 3- to 6-membered heterocycle, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl, C2-C6alkynyl, C1-C6haloalkyl, C2-C6haloalkenyl or C2-C6haloalkynyl. Each R3 is independently selected at each occurrence from hydrogen; or C1-C6alkyl, C2-C6alkenyl or C2-C6alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R3 is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C2-C6alkenyl, C2-C6alkynyl, C1-C6haloalkyl, C2-C6haloalkenyl or C2-C6haloalkynyl. Preferably, R3 is hydrogen.
  • In still another embodiment of this aspect, A-J- is A-C(O)— or A-O—C(O)—; A is 5- to 6-membered aryl or heteroaryl which is optionally substituted with one or more RG; -G-R5 is —N(R3)S(O)2—R5 (preferably —N(H)S(O)2—R5); and R5 is 3- to 6-membered cycloalkyl (preferably cyclopropyl) which is optionally substituted with one or more RG. Each R1 is independently selected at each occurrence from hydrogen or RG. RG is as defined above. Each R3 is independently selected at each occurrence from hydrogen; or C1-C6alkyl, C2-C6alkenyl or C2-C6alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R3 is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl, C2-C6alkynyl, C1-C6haloalkyl, C2-C6haloalkenyl or C2-C6haloalkynyl. Preferably, R3 is hydrogen.
  • In another aspect, the invention provides a compound of formula II-a:
  • Figure US20150119319A1-20150430-C00013
  • or a pharmaceutically acceptable salt, ester or prodrug thereof;
  • wherein:
  • J is —C(O)— or —O—C(O)—;
  • A is optionally substituted alkyl, or optionally substituted heteroaryl, optionally substituted aryl, optionally substituted heterocyclic, or optionally substituted carbocyclic;
  • R′ is H, optionally substituted alkyl; optionally substituted aryl; or optionally substituted heteroaryl;
  • G is —N(R3)S(O)p—;
  • p is 0, 1, or 2;
  • R5 is optionally substituted carbocyclic; and
  • each R3 is optionally substituted alkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; or hydrogen.
  • In one embodiment, R′ is methyl, ethyl, propyl, iso-propyl, butyl, i-butyl, t-butyl, phenyl, pyridyl, pyrimidyl, pyrazinyl, triazinyl, furanyl, thiophenyl, pyrrolyl, isoxazolyl, or pyrazolyl; each of which may be optionally substituted.
  • In another embodiment, R′ is methyl, ethyl, propyl, iso-propyl, butyl, i-butyl, t-butyl,
  • Figure US20150119319A1-20150430-C00014
  • In another embodiment, A is methyl, ethyl, propyl, iso-propyl, butyl, i-butyl, t-butyl, pentyl, hexyl, heptyl, phenyl, pyridyl, pyrimidyl, pyrazinyl, triazinyl, furanyl, thiophenyl, pyrrolyl, isoxazolyl, or pyrazolyl; each of which may be optionally substituted.
  • In a further embodiment, A is methyl, ethyl, propyl, iso-propyl, butyl, i-butyl, t-butyl, pentyl, hexyl, heptyl,
  • Figure US20150119319A1-20150430-C00015
  • In other embodiments, (1 is —N(R3)S(O)p— and R5 is cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, or cycloheptyl, each of which is optionally substituted.
  • In a further embodiment, R5 is optionally substituted cyclopropyl.
  • In still another embodiment of this aspect, A-J- is A-C(O)— or A-O—C(O)—; A is C1-C8alkyl, C2-C8alkenyl or C2-C8alkynyl, each of which is optionally substituted with one or more RH, or A is 5- to 6-membered carbocyclic or heterocyclic which is optionally substituted with one or more RG; -G-R5 is —N(R3)S(O)2—R5; and R5 is 3- to 6-membered carbocyclic or heterocyclic which is optionally substituted with one or more RG. Each RH is independently selected at each occurrence from independently selected at each occurrence from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, or cyano; or C1-C6alkyl, C2-C6alkenyl or C6alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in RH is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl, C2-C6alkynyl, C1-C6haloalkyl, C2-C6haloalkenyl or C2-C6haloalkynyl. Each R1 is independently selected at each occurrence from hydrogen or RG. Each RG is independently selected at each occurrence from halo, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano; or C1-C6alkyl, C2-C6alkenyl or C2-C6alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano; or C3-C6carbocycle or 3- to 6-membered heterocycle, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl, C2-C6alkynyl, C1-C6haloalkyl, C2-C6haloalkenyl or C2-C6haloalkynyl. Each R3 is independently selected at each occurrence from hydrogen; or C1-C6alkyl, C2-C6alkenyl or C2-C6alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R3 is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl, C2-C6alkynyl, C1-C6haloalkyl, C2-C6haloalkenyl or C2-C6haloalkynyl. Preferably, R3 is hydrogen.
  • In still another embodiment of this aspect, is A-C(O)— or A-O—C(O)—; A is 5- to 6-membered aryl or heteroaryl which is optionally substituted with one or more RG; -G-R5 is —N(R3)S(O)2—R5 (preferably —N(H)S(O)2—R5); and R5 is 3- to 6-membered cycloalkyl (preferably cyclopropyl) which is optionally substituted with one or more RG. Each R1 is independently selected at each occurrence from hydrogen or RG. RG is as defined above. Each R3 is independently selected at each occurrence from hydrogen; or C1-C6alkyl, C2-C6alkenyl or C2-C6alkynyl, each of which is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano or 3- to 6-membered carbocycle or heterocycle; or 3- to 6-membered carbocycle or heterocycle; wherein each 3- to 6-membered carbocycle or heterocycle in R3 is independently optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, nitro, oxo, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl, C2-C6alkynyl, C1-C6haloalkyl, C2-C6haloalkenyl or C2-C6haloalkynyl. Preferably, R3 is hydrogen.
  • In yet another aspect, the invention provides a compound of formula IV:
  • Figure US20150119319A1-20150430-C00016
  • wherein,
  • Z is OC(O), C(O), C(O)O, or C(O)NRx;
  • Rx is H or alkyl;
  • k is 0, 1, or 2;
  • each R1 is independently selected from the group consisting of:
      • (i) H, aryl; substituted aryl; heteroaryl; substituted heteroaryl;
      • (ii) heterocyclyl or substituted heterocyclyl; and
      • (iii) —C1-C8 alkyl, —C2-C8 alkenyl or —C2-C8 alkynyl, each containing 0, 1, or 3 heteroatoms independently selected from O, S, and N; substituted —C1-C8 alkyl, substituted —C2-C8 alkenyl or substituted —C2-C8 alkynyl, each containing 0, 1, 2, or 3 heteroatoms independently selected from O, S and N; —C3-C12 carbocyclic, substituted —C3-C12 carbocyclic; —C3-C12 cycloalkenyl, or substituted —C3-C12 cycloalkenyl;
  • n is 0, 1, 2, 3, or 4;
  • R6 is selected from aryl; substituted aryl; heteroaryl; substituted heteroaryl; heterocyclyl, substituted heterocyclyl; —C1-C5 alkyl, substituted —C1-C8 alkyl, —C3-C12 carbocyclic, and substituted —C3-C12 carbocyclic;
  • G is -E-R5;
      • wherein E is —N(R3)S(O)p—, —N(R3)C(O)—, or —N(R3)C(O)S(O)p—;
      • each p is independently 0, 1, or 2;
      • R5 is optionally substituted carbocyclic, optionally substituted heterocyclic, optionally substituted aryl, or optionally substituted heteroaryl;
  • each of Ra, Rb, Rc, and Rd are each independently H or F, wherein at least two of Ra, Rb, Rc, and Rd are F; and
  • R3 is H, optionally substituted alkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; or optionally substituted carbocyclic.
  • In another embodiment, the invention provides a compound wherein each R1 is substituted with one, two, three or four independent RE, wherein each RE is independently selected from alkyl, aryl, heteroaryl, cycloalkyl, heterocycloalkyl, halogen, hydroxy, amino, —CN, —CF3, —N3, —NO2, —ORF, —SR, —SORF, —SO2RF, —N(RF)S(O2)—RF, —N(RF) S(O2)NRFRF, —NRFRF, —C(O)ORF, —C(O)RF, —C(O)NRFRF, or —N(RF)C(O)RF; wherein each RF is independently hydrogen, C1-C6 alkyl, C2-C6 alkenyl, or C2-C6 alkynyl.
  • In certain embodiments. E is G-R5; and G is —O—, —S—, —N(R3)—, —N(R3)S(O)p—, —N(R3)C(O)—, —N(R3) C(O)S(Op)—, —OS(Op)—, —C(O)S(Op)—, or —C(O)N(R3)S(Op)—; and each p is independently 0, 1, or 1 In a further embodiment, E is —N(R3)S(O)p—.
  • In various embodiments, R5 is H; optionally substituted carbocyclic, optionally substituted heterocyclic, optionally substituted aryl, or optionally substituted heteroaryl. In a further embodiment, R5 is cyclopropyl optionally substituted with C1-C6alkyl, C1-C6alkoxyC1-C6alkyl, —C(O)OH, —C(O)NH2, or —C(O)O—C1-C6alkyl.
  • In certain embodiments of formulae I and I′,
    Figure US20150119319A1-20150430-P00002
    denotes a carbon-carbon single bond. In a further embodiment of each of the above-described aspects of the invention, at least two of Ra, Rb, Rc, and Rd are F. In one embodiment, Ra and Rb are F. In one embodiment of each of the above-described aspects of the invention, Rc and Rd are F. In one embodiment of each of the above-described aspects of the invention, Ra and Rc are F. In another embodiment of each of the above-described aspects of the invention, three of Ra, Rb, Rc, and Rd are F. In one embodiment of each of the above-described aspects of the invention, Ra, Rb, and Rc are F. In one embodiment of each of the above-described aspects of the invention, Ra, Rc, and Rd are F. In another embodiment of each of the above-described aspects of the invention, all of Ra, Rb, Rc, and Rd are F.
  • In certain embodiments for formulae I and I′,
    Figure US20150119319A1-20150430-P00002
    denotes a carbon-carbon double bond. In certain embodiments of each of the above-described aspects of the invention, Ra and Rc are F.
  • In another embodiment of each of the above-described aspects of the invention, J is —(C═O)—; and A is optionally substituted heteroaryl.
  • In another embodiment of each of the above-described aspects of the invention, J is —(C═O)—; and A is optionally substituted aryl.
  • In another embodiment of each of the above-described aspects of the invention J is —(C═O)—; and A is optionally substituted alkyl.
  • In another embodiment of each of the above-described aspects of the invention, J is —(C═O)—; A is optionally substituted alkyl; Z is O, ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and any two of Ra, Rb, Rc, and Rd are each independently F.
  • In another embodiment of each of the above-described aspects of the invention, J is —(C═O)—; A is optionally substituted aryl; Z is O, ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and any two of Ra, Rb, Rc, and Rd are each independently F.
  • In another embodiment of each of the above-described aspects of the invention. J is —(C═O)—; A is optionally substituted heteroaryl; Z is O, ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and any two of Ra, Rb, Rc, and Rd are each independently F.
  • In another embodiment of each of the above-described aspects of the invention, J is —(C═O)—; A is optionally substituted alkyl; Z is O, ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and any two of Ra, Rb, Rc, and Rd are each independently F.
  • In another embodiment of each of the above-described aspects of the invention, J is —(C═O)O—; A is optionally substituted aryl; Z is O, ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and any two of Ra, Rb, Rc, and Rd are each independently F.
  • In another embodiment of each of the above-described aspects of the invention, J is —(C═O)O—; A is optionally substituted heteroaryl; Z is O, ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and any two of Ra, Rb, Rc, and Rd are each independently F.
  • In another embodiment of each of the above-described aspects of the invention, J is —(C═O)O— or —(C═O)—; A is optionally substituted alkyl; Z is O or (C═O), ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and Ra and Rb are F, and Rc and Rd are H.
  • In another embodiment of each of the above-described aspects of the invention, J is —(C═O)O— or —(C═O)—; A is optionally substituted alkyl; Z is O or (C═O), ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and Ra and Rd are F, and Rc and Rd are H.
  • In another embodiment of each of the above-described aspects of the invention, J is —(C═O)O— or —(C═O)—; A is optionally substituted alkyl; Z is O or (C═O), ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and Ra and Rb are H, and Rc, and Rd are F.
  • In another embodiment of each of the above-described aspects of the invention, J is —(C═O)O— or —(C═O)—; A is optionally substituted aryl; Z is O or (C═O), ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and Ra and Rb are F, and Rc and Rd are H.
  • In another embodiment of each of the above-described aspects of the invention, J is —(C═O)O— or —(C═O)—; A is optionally substituted aryl; Z is O or (C═O), ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and Ra and Rc are F, and Rb and Rd are H.
  • In another embodiment of each of the above-described aspects of the invention, J is —(C═O)O— or —(C═O)—; A is optionally substituted aryl; Z is O or (C═O), ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and Ra and Rb, are H, and Rc and Rd are F.
  • In another embodiment of each of the above-described aspects of the invention, J is —(C═O)O— or —(C═O)—; A is optionally substituted heteroaryl; Z is O or (C═O), ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and Ra and Rb are F, and Rc and Rd are H.
  • In another embodiment of each of the above-described aspects of the invention, J is —(C═O)O— or —(C═O)—; A is optionally substituted heteroaryl; Z is O or (C═O), ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and Ra and Rc are F, and Rb and Rd are H.
  • In another embodiment of each of the above-described aspects of the invention, J is —(C═O)O— or —(C═O)—; A is optionally substituted heteroaryl; Z is O or (C═O), ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl; and Ra and Rb are H, and Rc and Rd are F.
  • In another embodiment of each of the above-described aspects of the invention, E is —NHS(O)2R5; R5 is independently cyclopropyl optionally substituted with C1-C6alkyl; J is —(C═O)—; A is optionally substituted alkyl, Z is O; ring X is phenanthridinyl or quinoxalinyl; and any two of Ra, Rb, Rc, and Rd are each independently F.
  • In another embodiment of each of the above-described aspects of the invention, E is —NHS(O)2R5; R5 is independently cyclopropyl optionally substituted with C1-C6alkyl; J is —(C═O)—; A is optionally substituted aryl, Z is O; ring X is phenanthridinyl or quinoxalinyl; and any two of Ra, Rb, Rc, and Rd are each independently F.
  • In another embodiment of each of the above-described aspects of the invention, E is —NHS(O)2—R5; R5 is independently cyclopropyl optionally substituted with C1-C6alkyl; J is —(C═O)—; A is optionally substituted heteroaryl, Z is O; ring X is phenanthridinyl or quinoxalinyl; and any two of Ra, Rb, Rc, and Rd are each independently F.
  • In another embodiment of each of the above-described aspects of the invention, E is —NHS(O)2—R5; R5 is independently cyclopropyl optionally substituted with C1-C6alkyl; J is —(C═O)O—; A is optionally substituted alkyl, Z is O; ring X is phenanthridinyl or quinoxalinyl; and any two of Ra, Rb, Rc, and Rd are each independently F.
  • In another embodiment of each of the above-described aspects of the invention, E is —NHS(O)2—R5; R5 is independently cyclopropyl optionally substituted with C1-C6alkyl; J is —(C═O)O—; A is optionally substituted aryl, Z is O; ring X is phenanthridinyl or quinoxalinyl; and any two of Ra, Rb, Rc, and Rd are each independently F.
  • In another embodiment of each of the above-described aspects of the invention, E is —NHS(O)2—R5; R5 is independently cyclopropyl optionally substituted with C1-C6alkyl; J is —(C═O)O—; A is optionally substituted heteroaryl, Z is O; ring X is phenanthridinyl or quinoxalinyl; and any two of Ra, Rb, Rc, and Rd are each independently F.
  • In another embodiment of each of the above-described aspects of the invention, A is an optionally substituted nitrogen-containing heteroaryl.
  • In another embodiment of each of the above-described aspects of the invention, A is optionally substituted isoxazolyl, optionally substituted thiazolyl, optionally substituted pyrazolyl, optionally substituted pyrazinyl, optionally substituted pyridinyl, or optionally substituted pyrimidinyl.
  • In another embodiment of each of the above-described aspects of the invention, A is alkyl-substituted isoxazolyl.
  • In another embodiment of each of the above-described aspects of the invention, J can be, for example, —(C═O)— or —(C═O)O—; and A is selected from the following groups:
  • Figure US20150119319A1-20150430-C00017
  • Representative compounds include, but are not limited to, the following compounds:
  •
    N-((2R,6S,13aS,14aR,16aS)-14a- tert-butyl (2R,6S,13aS,14aR,16aS)-14a-
    (cyclopropyl sulfonylcarbamoyl)-12,12- (cyclopropylsulfonylcarbamoyl)-12,12-
    difluoro-5,16-dioxo-2-(phenanthridin-6- difluoro-5,16-dioxo-2-(phenanthridin-6-
    yloxy)octadecahydro yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a]
    cyclopropa[e]pyrrolo[1,2-a][1,4]diaza [1,4]diazacyclopentactecin-6-ylcarbamate
    cyclopentadecin-6-yl)-5-methylisoxazole-3-
    carboxamide
    (2R,6S,13aS,14aR,16aS)-N-(cyclopropyl (2R,6S,13aS,14aR,16aS)-N-(cyclopropyl
    sulfonyl)-12,12-difluoro-6-(5- sulfonyl)-6-(1,5-dimethyl-1H-pyrazole-3-
    methylpyrazine-2-carboxamido)-5,16-dioxo- carboxamido)-12,12-difluoro-5,16-dioxo-2-
    2-(phenanthridin-6- (phenanthridin-6-yloxy)octadecahydrocyclo
    yloxy)octadecahydrocyclopropa[e]pyrrolo[1, propa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-
    2-a][1,4]diazacyclopentadecine-14a- 14a-carboxamide
    carboxamide
    tert-butyl (2R,6S,13aS,14aR,16aS)-14a- tert-butyl (2R,6S,13aS,14aR,16aS)-14a-
    (cyclopropylsulfonylcarbamoyl)-12,12- (cyclopropylsulfonylcarbamoyl)-12,12-
    difluoro-5,16-dioxo-2-(quinoxalin-2- difluoro-5,16-dioxo-2-(3-phenylquinoxalin-
    yloxy)octadecahydrocyclopropa[e]pyrrolo[1, 2-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a]
    2-a][1,4]diazacyclopentadecin-6-ylcarbamate [1,4]diazacyclopentadecin-6-ylcarbamate
    tert-butyl (2R,6S,13aS,14aR,16aS)-14a- N-((2R,6S,13aS,14aR,16aS)-14a-
    (cyclopropylsulfonylcarbamoyl)-12,12- (cyclopropylsulfonylcarbamoyl)-12,12-
    difluoro-2-(3-methylquinoxalin-2-yloxy)- difluoro-5,16-dioxo-2-(quinoxalin-2-
    5,16-dioxooctadecahydrocyclopropa[e]pyrrolo yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a]
    [1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate [1,4]diazacyclopentadecin-6-yl)-5-
    methylisoxazole-3-carboxamide
    N-((2R,6S,13aS,14aR,16aS)-14a- N-((2R,6S,13aS,14aR,16aS)-14a-
    (cyclopropylsulfonylcarbamoyl)-12,12- (cyclopropylsulfonylcarbamoyl)-12,12-
    difluoro-2-(3-methylquinoxalin-2-yloxy)- difluoro-5,16-dioxo-2-(3-phenylquinoxalin-2-
    5,16-dioxooctadecahydrocyclopropa[e]pyrrolo yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a]
    [1,2-a][1,4]diazacyclopentadecin-6-yl)-5- [1,4]diazacyclopentadecin-6-yl)-5
    methylisoxazole-3-carboxamide methylisoxazole-3-carboxamide
    (2R,6S,13aS,14aR,16aS)-6-(tert- N-((2R,6S,13aS,14aR,16aS)-2-(3-
    butoxycarbonylamino)-14a- (benzo[d]thiazol-2-yl)quinoxalin-2-yloxy)-
    (cyclopropylsulfonylcarbamoyl)-12,12- 14a-(cyclopropylsulfonylcarbamoyl)-12,12-
    difluoro-5,16-dioxooetadecahydrocyclo difluoro-5,16-
    propa[e]pyrrolo[1,2-a][1,4]diazacyclo dioxooctadecahydrocyclopropa[e]
    pentadecin-2-yl 4-fluoroisoindoline-2- pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-
    carboxylate yl)-5-methylisoxazole-3-carboxamide
    (2R,6S,13aS,14aR,16aS)-2-(3-(benzofuran- N-((2R,6S,13aS,14aR,16aS)-2-(3-
    2-yl)quinoxalin-2-yloxy)-N- (benzofuran-2-yl)quinoxalin-2-yloxy)-14a-
    (cyclopropylsulfonyl)-12,12-difluoro-6-(1- cyclopropylsulfonylcarbamoyl)-12,12-
    methyl-1H-pyrazole-3-carboxamido)-5,16- difluoro-5,16-dioxooctadecahydrocyclo
    dioxooctadecahydro propa[e]pyrrolo[1,2-a][1,4]diazacyclo
    cyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclo pentadecin-6-yl)-5-methylisoxazole-3-
    pentadecine-14a-carboxamide carboxamide
    tert-butyl (2R,6S,13aS,14aR,16aS)-14a- N-((2R,6S,13aS,14aR,16aS)-14a-
    (cyclopropylsulfonylcarbamoyl)-2-(3- (cyclopropylsulfonylcarbamoyl)-2-(3-
    ethylquinoxalin-2-yloxy)-12,12-difluoro-5,16- ethylquinoxalin-2-yloxy)-12,12-difluoro-5,16-
    dioxooetadecahydrocyclopropa[e]pyrrol[1,2-a] dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a]
    [1,4]diazacyclopentadecin-6-ylcarbamate [1,4]diazacyclopentadecin-6-yl)-5-
    methylisoxazole-3-carboxamide
    tert-butyl (2R,6S,13aS,14aR,16aS)-2-(3- N-((2R,6S,13aS,14aR,16aS)-2-(3-
    ethylquinoxalin-2-yloxy)-12,12-difluoro-14a-(1- ethylquinoxalin-2-yloxy)-12,12-difluoro-14a-(1-
    methylcyclopropylsulfonylcarbamoyl)-5,16- methylcyclopropylsulfonylcarbamoyl)-5,16-
    dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a] dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a]
    [1,4]diazacyclopentadecin-6-ylcarbamate [1,4]diazacyclopentadecin-6-yl)-5-
    methylisoxazole-3-carboxamide
    N-((2R,6S,13aS,14aR,16aS)-14a-(cyclo (2R,6S,13aS,14aR,16aS)-N-
    propylsulfonylcarbamoyl)-2-(3- (cyclopropylsulfonyl)-2-(3-ethylquinoxalin-
    ethylquinoxalin-2-yloxy)-12,12-difluoro- 2-yloxy)-12,12-difluoro-5,16-dioxo-6-
    5,16-dioxo pivalamidooctadecahydrocyclopropa[e]pyrrolo
    octadecahydrocyclopropa[e]pyrrolo[1,2- [1,2-a][1,4]diazacyclopentadecine-14a-
    a][1,4]diazacyclopentadecin-6-yl)isoxazole- carboxamide
    3-carboxamide
    tert-butyl (2R,6S,13aS,14aR,16aS)-2-(3- tert-butyl (2R,6S,13aS,14aR,16aS)-2-(3-
    benzo[d]thiazol-2-yl)quinoxalin-2-yloxy)- (benzofuran-2-yl)quinoxalin-2-yloxy)-14a-
    14a-(cyclopropylsulfonylcarbamoyl)-12,12- (cyclopropylsulfonylcarbamoyl)-12,12-
    difluoro-5,16- difluoro-5,16-
    dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a] dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a]
    [1,4]diazacyclopentadecin-6-ylcarbamate [1,4]diazacyclopentadecin-6-ylcarbamate
  • Other compounds contemplated by the invention include the following:
  •
    (2R,6S,13aS,14aR,16aS)-12,12-difluoro-2- (2R,6S,13aS,14aR,16aS)-N-
    (3-fluorophenanthridin-6-yloxy)-6-(1- (cyclopropylsulfonyl)-12,12-difluoro-2-
    methyl-1H-pyrazole-3-carboxamido)-N-(1- (3-fluorophenanthridin-6-yloxy)-6-(1-
    methylcyclopropylsulfonyl)-5,16- methyl-1H-pyrazole-3-carboxamido)-
    dioxooctadecahydrocyclopropa[e]pyrrolo[1, 5,16-dioxooctadecahydrocyclopropa[e]pyrrolo
    2-a][1,4]diazacyclopentadecine-14a- [1,2-a][1,4]diazacyclopentadecine-14a-
    carboxamide carboxamide
    (2R,6S,13aS,14aR,16aS)-12,12-difluoro-2- (2R,6S,13aS,14aR,16aS)-N-
    (9-fluorophenanthridin-6-yloxy)-6-(1- (cyclopropylsulfonyl)-12,12-difluoro-2-
    methyl-1H-pyrazole-3-carboxamido)-N-(1- (9-fluorophenanthridin-6-yloxy)-6-(1-
    methylcyclopropylsulfonyl)-5,16- methyl-1H-pyrazole-3-carboxamido)-
    dioxooetadecahydroxycyclopropa[e]pyrrolo[1, 5,16-dioxooctadecahydrocyclopropa[e]pyrrolo
    2-a][1,4]diazacyclopentadecine-14a- [1,2-a][1,4]diazacyclopentadecine-14a-
    carboxamide carboxamide
    N-((2R,6S,13aS,14aR,16aS)-12,12-difluoro- N-((2R,6S,13aS,14aR,16aS)-14a-
    2-(3-fluorophenanthridin-6-yloxy)-14a-(1- (cyclopropylsulfonylcarbamoyl)-12,12-
    methylcyclopropylsulfonylcarbamoyl)-5,16- difluoro-2-(3-fluorophenanthridin-6-
    dioxooctadecahydrocyclopropa[e]pyrrolo[1, yloxy)-5,16-
    2-a][1,4]diazacyclopentadecin-6-yl)-5- dioxooctadecahydrocyclopropa[e]pyrrolo
    methylisoxazole-3-carboxamide [1,2-a][1,4]diazacyclopentadecin-6-yl)-5-
    methylisoxazole-3-carboxamide
    N-((2R,6S,13aS,14aR,16aS)-12,12-difluoro- N-((2R,6S,13aS,14aR,16aS)-14a-
    2-(9-fluorophenanthridin-6-yloxy)-14a-(1- (cyclopropylsulfonylcarbamoyl)-12,12-
    methylcyclopropylsulfonylcarbamoyl)-5,16- difluoro-2-(9-fluorophenanthridin-6-
    dioxooctadecahydrocyclopropa[e]pyrrolo[1, yloxy)-5,16-
    2-a][1,4]diazacyclopentadecin-6-yl)-5- dioxooctadecahydrocyclopropa[e]pyrrolo
    methylisoxazole-3-carboxamide [1,2-a][1,4]diazacyclopentadecin-6-yl)-5-
    methylisoxazole-3-carboxamide
    (2R,6S,13aS,14aR,16aS)-12,12-difluoro-6- (2R,6S,13aS,14aR,16aS)-N-
    (1-methyl-1H-pyrazole-3-carboxamido)-N- (cyclopropylsulfonyl)-12,12-difluoro-6-
    (1-methylcyclopropylsulfonyl))-5,16-dioxo- (1-methyl-1H-pyrazole-3-carboxamido)-
    2-(3-trifluoromethoxy)phenanthridin-6- 5,16-dioxo-2-(3-
    yloxy)octadecahydrocyclopropa[e]pyrrolo[1, (trifluoromethoxy)phenanthridin-6-
    2-a][1,4]diazacyclopentadecine-14a- yloxy)octadecahydrocyclopropa[e]pyrrolo
    carboxamide [1,2-a][1,4]diazacyclopentadecine-14a-
    carboxamide
    (2R,6S,13aS,14aR,16aS)-12,12-difluoro-6- (2R,6S,13aS,14aR,16aS)-N-
    (1-methyl-1H-pyrazole-3-carboxamido)-N- (cyclopropylsulfonyl)-12,12-difluoro-6-
    (1-methylcyclopropylsulfonyl)-5,16-dioxo- (1-methyl-1H-pyrazole-3-carboxamido)-
    2-(3-(trifluoromethyl)phenanthridin-6- 5,16-dioxo-2-(3-
    yloxy)octadecahydrocyclopropa[e]pyrrolo[1, (trifluoromethyl)phenanthridin-6-
    2-a][1,4]diazacyclopentadecine-14a- yloxy)octadecahydrocyclopropa[e]pyrrolo
    carboxamide [1,2-a][1,4]diazacyclopentadecine-14a-
    carboxamide
    N-((2R,6S,13aS,14aR,16aS)-12,12-difluoro- N-((2R,6S,13aS,14aR,16aS)-14a-
    14a-(1- (cyclopropylsulfonylcarbamoyl)-12,12-
    methylcyclopropylsulfonylcarbamoyl)-5,16- difluoro-5,16-dioxo-2-(3-
    dioxo-243-(trifluoromethoxy)phenanthridin- (trifluoromethoxy)phenanthridin-6-
    6- yloxy)octadecahydrocyclopropa[e]pyrrolo
    yloxy)octadecahydrocyclopropa[e]pyrrolo[1, [1,2-a][1,4]diazacyclopentadecin-6-yl)-5-
    2-a][1,4]diazacyclopentadecin-6-yl)-5- methylisoxazole-3-carboxamide
    methylisoxazole-3-carboxamide
    N-((2R,6S,13aS,14aR,16aS)-12,12-difluoro- N-((2R,6S,13aS,14aR,16aS)-14a-
    14a-(1- (cyclopropylsulfonylcarbamoyl)-12,12-
    methylcyclopropylsulfonylcarbamoyl)-5,16- difluoro-5,16-dioxo-2(3
    dioxo-243-(trifluoromethyl)phenanthridin- (trifluoromethyl)phenanthridin-6-
    6- yloxy)octadecahydrocyclopropa[e]pyrrolo
    yloxy)octadecahydrocyclopropa[e]pyrrolo[1, [1,2-a][1,4]diazacyclopentadecin-6-yl)-5-
    2-a][1,4]diazacyclopentadecin-6-yl)-5- methylisoxazole-3-carboxamide
    methylisoxazole-3-carboxamide
    (2R,6S,13aS,14aR,16aS)-12,12-difluoro-2- (2R,6S,13aS,14aR,16aS)-N-
    (3-methoxyphenanthridin-6-yloxy)-6-(1- (cyclopropylsulfonyl)-12,12-difluoro-2-
    methyl-1H-pyrazole-3-carboxamido)-N-(1 - (3-methoxyphenanthridin-6-yloxy)-6-(1-
    methylcyclopropylsulfonyl)-5,16- methyl-1H-pyrazole-3-carboxamido)-
    dioxooctadecahydrocyclopropa[e]pyrrolo[1, 5,16-dioxooctadecahydrocyclopropa[e]pyrrolo
    2-a][1,4]diazacyclopentadecine-14a- [1,2-a][1,4]diazacyclopentadecine-14a-
    carboxamide carboxamide
    (2R,6S,13aS,14aR,16aS)-2-(3,9- (2R,6S,13aS,14aR,16aS)-N-
    difluorophenanthridin-6-yloxy)-12,12- (cyclopropylsulfonyl)-2-(3,9-
    difluoro-6-(1-methyl-1H-pyrazole-3- difluorophenanthridin-6-yloxy)-12,12-
    carboxamido)-N-(1- difluoro-6-(1-methyl-1H-pyrazole-3-
    methylcyclopropylsulfonyl)-5,16- carboxamido)-5,16-
    dioxooetadecahydrocyclopropa[e]pyrrolo[1, dioxooctadecahydrocyclopropa[e]pyrrolo
    2-a][1,4]diazacyclopentadecine-14a- [1,2-a][1,4]diazacyclopentadecine-14a
    carboxamide carboxamide
    N-((2R,6S,13aS,14aR,16aS)-12,12-difluoro- N-((2R,6S,13aS,14aR,16aS)-14a-
    2-(3-methoxyphenanthridin-6-yloxy)-14a- (cyclopropylsulfonylcarbamoyl)-12,12-
    (1-methylcyclopropylsulfonylcarbamoyl)- difluoro-2-(3-methoxyphenanthridin-6-
    5,16- yloxy)-5,16-
    dioxooctadecahydrocyclopropa[e]pyrrolo[1, dioxoodadecahydrocyclopropa[e]pyrrolo
    2-a][1,4]diazacyclopentadecin-6-yl)-5- [1,2-a][1,4]diazacyclopentadecine-14a-
    methylisoxazole-3-carboxamide methylisoxazole-3-carboxamide
    N-((2R,6S,13aS,14aR,16aS)-2-(3,9- N-((2R,6S,13aS,14aR,16aS)-14a-
    difluorophenanthridin-6-yloxy)-12,12- (cyclopropylsulfonylcarbamoyl)-2-(3,9-
    difluoro-14a-(1- difluorophenanthridin-6-yloxy)-12,12-
    methylcyclopropylsulfonylcarbamoyl)-5,16- difluoro-5,16-
    dioxooctadecahydrocyclopropa[e]pyrrolo[1, dioxooctadecahydrocyclopropa[e]pyrrolo
    2-a][1,4]diazacyclopentadecin-6-yl)-5- [1,2-a][1,4]diazacyclopentadecin-6-yl)-5-
    methylisoxazole-3-carboxamide methylisoxazole-3-carboxamide
  • It is understood that the embodiments of the invention discussed below with respect to the preferred variable selections can be taken alone or in combination with one or more of the other embodiments, or preferred variable selections, of the invention, as if each combination were explicitly listed herein.
  • In other aspects, the invention provides a pharmaceutical composition comprising a therapeutically effective amount of a compound of the invention (e.g., a compound of formula I, or any formulae as described herein), or a pharmaceutically acceptable salt, ester, or prodrug thereof, in combination with a pharmaceutically acceptable carrier or excipient.
  • In another aspect, the invention provides a pharmaceutical composition comprising a therapeutically effective amount of a compound described herein, or an embodiment or example described herein, or a pharmaceutically acceptable salt, ester, hydrate, solvate, polymorph, or prodrug thereof, in combination with a pharmaceutically acceptable carrier or excipient.
  • According to another embodiment, the pharmaceutical compositions of the present invention may further contain one or more other anti-HCV agents. Examples of anti-HCV agents include, but are not limited to, α-interferon; β-interferon; pegylated interferon-α; pegylated interferon-lambda; ribavirin; viramidine; R-5158; nitazoxanide; amantadine; Debio-025, NEM-811; HCV polymerase inhibitors such as R7128, R1626, R4048, T-1106, PSI-7851, PF-00868554, ANA-598, IDX184, IDX102, IDX375, GS-9190, VCH-759, VCH-916, MK-3281, BCX-4678, MK-3281, VBY708, ANA598, GL59728 or GL60667; BMS-790052; BMS-791325; BMS-650032; HCV entry, helicase or internal ribosome entry site inhibitors; HCV NS5A inhibitors; or other HCV replication inhibitors such as GS-9132, ACH-1095, AP-H005, A-831, A-689, AZD2836. For further details see S. Tan, A. Pause, Y. Shi, N. Sonenberg, Hepatitis C Therapeutics: Current Status and Emerging Strategies, Nature Rev. Drug Discov., 1, 867-881 (2002); WO 00/59929 (2000); WO 99/07733 (1999); WO 00/09543 (2000); WO 99/50230 (1999); U.S. Pat. No. 5,861,297 (1999); and US2002/0037998 (2002).
  • According to an additional embodiment, the pharmaceutical compositions of the present invention may further contain another HCV protease inhibitor, such as telaprevir, boceprevir, ITMN-191, B1-201335, TMC-435, MK-7009, VBY-376, VX-500, VX-813, PHX-B, ACH-1625, IDX136, or IDX316.
  • In other embodiments, the invention provides a pharmaceutical composition further comprising pegylated interferon, another anti-viral, anti-bacterial, anti-fungal or anti-cancer agent, or an immune modulator, and/or further comprising a cytochrome P450 monooxygenase inhibitor or a pharmaceutically acceptable salt thereof. In certain embodiments, the cytochrome P450 monooxygenase inhibitor is ritonavir.
  • In another aspect, the invention provides for the use of a compound of the invention to manufacture an agent for preventing or treating viral infection. In another aspect, the invention provides for the use of a compound of the invention to manufacture an agent for preventing or treating hepatitis C viral infection. The present invention also contemplates the use of a solvate (e.g., hydrate) of a compound of the invention to manufacture pharmaceutical compositions for preventing or treating hepatitis C infection. As used herein, “solvate” refers to the physical association of a compound of the invention with one or more solvent molecule, whether organic or inorganic. This physical association often includes hydrogen bonding. In certain instances, the solvate is capable of isolation, for example, when one or more solvate molecules are incorporated in the crystal lattice of the crystalline solid.
  • In another embodiment, the compounds or pharmaceutical compositions of the invention are administered with ritonavir, either simultaneously or sequentially. In certain embodiments, a compound or a pharmaceutical composition of the invention is administered in the same composition as ritonavir. In another embodiment, a compound or a pharmaceutical composition thereof of the invention is administered in a different composition than ritonavir.
  • According to yet another embodiment, the pharmaceutical compositions of the present invention may further comprise inhibitor(s) of other targets in the HCV life cycle, including, but not limited to, helicase, polyrnerase, metalloprotease, CD81, NS5A, cyclophilin, and internal ribosome entry site (IRES).
  • In one aspect, the invention provides a method of treating a viral infection in a subject, comprising administering to the subject a therapeutically effective amount of a compound of the invention (e.g., a compound of formula I or I′ described herein), or a pharmaceutically acceptable salt, ester or prodrug thereof, or a pharmaceutical composition comprising the same.
  • According to a further embodiment, the present invention includes methods of treating hepatitis C infections in a subject in need of such treatment by administering to said subject an anti-HCV virally effective amount or an inhibitory amount of the compounds or pharmaceutical compositions of the present invention.
  • According to another embodiment, the present invention includes methods of treating hepatitis C infections in a subject in need of such treatment by administering to said subject a compound or a pharmaceutical composition of the present invention. The methods can further include administration of an additional therapeutic agent, including another antiviral agent or an anti-HCV agent as described hereinabove. The additional agent can be co-administered (such as concurrently administered or sequentially administered) with a compound (a pharmaceutically acceptable salt, ester or prodrug thereof) or a pharmaceutical composition of the present invention. The additional agent(s) and a compound (or a pharmaceutically acceptable salt, ester or prodrug thereof) of the present invention can be formulated in the same composition, or in different compositions but co-administered concurrently or sequentially. The methods herein can further include the step of identifying that the subject is in need of treatment for hepatitis C infection. The identification can be by subjective (e.g., health care provider determination) or objective (e.g., diagnostic test) means.
  • In one aspect, the invention provides a method of inhibiting the replication of hepatitis C virus, the method comprising contacting a hepatitis C virus with an effective amount of a compound or pharmaceutical composition of the invention.
  • In another embodiment, the invention provides a method as described above, further comprising administering an additional anti-hepatitis C virus agent. Examples of anti-hepatitis C virus agents include, but are not limited to, α-interferon; β-interferon; pegylated interferon-α; pegylated interferon-lambda; ribavirin; viramidine; R-5158; nitazoxanide; amantadine; Debio-025, NIM-811; HCV polymerase inhibitors such as R7128, R1626, R4048, T-1106, PSI-7851, PF-00868554, ANA-598, IDXI84, IDX102, IDX375, GS-9190, VCH-759, VCH-916, MK-3281, BCX-4678, MK-3281, VBY708, ANA598, GL59728 or GL60667; BMS-790052; BMS-791325; BMS-650032; HCV entry, helicase or internal ribosome entry site inhibitors; or other HCV replication inhibitors such as GS-9132, ACH-1095, AP-H005, A-831, A-689, AZD2836. For further details see S. Tan, A. Pause, Y. Shi, N. Sonenberg, Hepatitis C Therapeutics: Current Status and Emerging Strategies, Nature Rev. Drug Discov., 1, 867-881 (2002); WO 00/59929 (2000); WO 99/07733 (1999); WO 00/09543 (2000); WO 99/50230 (1999); U.S. Pat. No. 5,861,297 (1999); and US2002/0037998 (2002). Preferably, a compound or a pharmaceutical composition of the present invention is co-administered with, or used in combination with, pegylated interferon (e.g., pegylated interferon alpha-2a or 2b) and ribavirin. Ritonavir or another cytochrome P450 monooxygenase inhibitor can also be used to enhance the pharmacokinetics of the compound of the present invention. The patient being treated is preferably infected with HCV genotype-1 (e.g., genotype 1a or 1b), Patients infected with other HCV genotypes, such as genotypes 2, 3, 4, 5 or 6, can also be treated with a compound or a pharmaceutical composition of the present invention.
  • In another embodiment, the invention provides a method as described above, further comprising administering another 1-ICV protease inhibitor, an HCV polymerase inhibitor, an HCV helicase inhibitor, or an internal ribosome entry site (IRES) inhibitor, such as telaprevir, boceprevir, ITMN-191, 131-201335, TMC-435, MK-7009, VBY-376, VX-500, VX-813, PHX-B, ACH-1625, IDX136, IDX316, pegylated interferon, another anti-viral, anti-bacterial, anti-fungal or anti-cancer agent, or an immune modulator, and/or further comprising a cytochrome P450 monooxygenase inhibitor or a pharmaceutically acceptable salt thereof. In certain embodiments, the cytochrome P450 monooxygenase inhibitor is ritonavir.
  • An additional embodiment of the present invention includes methods of treating biological samples by contacting the biological samples with the compounds of the present invention.
  • Yet another aspect of the present invention is a process of making any of the compounds delineated herein employing any of the synthetic means delineated herein.
    • DEFINITIONS
  • Listed below are definitions of various terms used to describe this invention. These definitions apply to the terms as they are used throughout this specification and claims, unless otherwise limited in specific instances, either individually or as part of a larger group. The number of carbon atoms in a hydrocarbyl substituent can be indicated by the prefix “Cx-Cy,” where x is the minimum and y is the maximum number of carbon atoms in the substituent. Likewise, a C, chain means a hydrocarbyl chain containing x carbon atoms.
  • The prefix “halo” indicates that the substituent to which the prefix is attached is substituted with one or more independently selected halogen radicals. For example, “C1-C8haloalkyl” means a C1-C8alkyl substituent wherein at least one hydrogen radical is replaced with a halogen radical.
  • If a linking element in a depicted structure is “absent”, then the left element in the depicted structure is directly linked to the right element in the depicted structure. For example, if a chemical structure is depicted as X-(L)n-Y wherein L is absent or n is 0, then the chemical structure is X—Y.
  • The term “alkyl” as used herein, refers to a saturated, straight- or branched-chain hydrocarbon radical preferably containing one to eight carbon atoms (C1-C8 alkyl). Examples of alkyl radicals include, but are not limited to, methyl, ethyl, propyl, isopropyl, n-butyl, tert-butyl, neopentyl, n-hexyl, heptyl, octyl radicals and the like.
  • The term “alkenyl” as used herein, denotes a straight- or branched-chain hydrocarbon radical containing one or more double bonds and preferably containing two to eight carbon atoms (C2-C8 alkenyl). Alkenyl groups include, but are not limited to, for example, ethenyl, propenyl, butenyl, 1-methyl-2-buten-1-yl, heptenyl, octenyl and the like.
  • The term “alkynyl” as used herein, denotes a straight- or branched-chain hydrocarbon radical containing one or more triple bonds and preferably containing two to eight carbon atoms (C2-C8 alkynyl). Representative alkynyl groups include, but are not limited to, for example, ethynyl, 1-propynyl, 1-butyny-1, heptynyl, octynyl and the like.
  • The term “cycloalkyl” denotes a monovalent group derived from a monocyclic or polycyclic saturated carbocyclic ring compound and preferably containing 3 to 14 carbon ring atoms (C3-C14 cycloalkyl). Examples of cycloalkyl include, but not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyciohexyl, bicyclo[2.2.1]heptyl, and bicyclo[2.2.2]octyl and the like.
  • The terms “carbocycle” or “carbocyclic” or “carbocyclyl” refer to a saturated (e.g., “cycloalkyl”), partially saturated (e.g., “cycloalkenyl” or “cycloalkynyl”) or completely unsaturated (e.g., “aryl”) ring system containing zero heteroatom ring atom and preferably containing 3 to 14 carbon ring atoms (C3-C14carbocyclyl, such as C3-C14cycloalkyl). A carbocyclyl may be, without limitation, a single ring, or two or more fused or covalently inked rings, or bridged or Spiro rings. A substituted carbocyclyl may have either cis or trans geometry. Representative examples of carbocyclyl groups include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, cyclooctyl, cyclopentenyl, cyclopentadienyl, cyclohexadienyl, adamantyl, decahydro-naphthalenyl, octahydro-indenyl, cyclohexenyl, phenyl, naphthyl, fluorenyl, indanyl, 1,2,3,4-tetrahydro-naphthyl, indenyl, isoindenyl, bicyclodecanyl, anthracenyl, phenanthrene, benzonaphthenyl (also known as “phenalenyl”), decalinyl, and norpinanyl and the like. A carbocyclyl group can be attached to the parent molecular moiety through any substitutable carbon atom of the group.
  • The term “aryl” refers to an aromatic carbocyclyl containing from 6 to 14 carbon ring atoms. Non-limiting examples of aryls include phenyl, naphthalenyl, anthracenyl, and indenyl and the like. An aryl group can be connected to the parent molecular moiety through any substitutable carbon atom of the group.
  • The term “heteroaryl” means an aromatic heterocyclyl typically containing from 5 to 14 ring atoms. Non-limiting examples of five-membered heteroaryls include imidazolyl; furanyl; thiophenyl (or thienyl or thiofuranyl); pyrazolyl; oxazolyl; isoxazolyl; thiazolyl; 1,2,3-, 1,2,4-, 1,2,5-, and 1,3,4-oxadiazolyl; and isothiazolyl. Non-limiting examples of six-membered heteroaryls include pyridinyl; pyrazinyl; pyrimidinyl; pyridazinyl; and 1,3,5-, 1,2,4-, and 1,2,3-triazinyl. Non-limiting examples of 6/5-membered fused ring heteroaryls include benzothiofiiranyl, isobenzothiofuranyl, benzisoxazolyl, benzoxazolyl, purinyl, and anthranilyl. Non-limiting examples of 6/6-membered fused ring heteroaryls include quinolinyl; isoquinolinyl; and benzoxazinyl (including ciimolinyl and quinazolinyl).
  • The term “heterocycloalkyl” refers to a non-aromatic 3-, 4-, 5-, 6- or 7-membered ring or a bi- or tri-cyclic group fused system, where at least one of the ring atoms is a heteroatom, and where (i) each 5-membered ring has 0 to 1 double bonds and each 6-membered ring has 0 to 2 double bonds, (ii) the nitrogen and sulfur heteroatoms may optionally be oxidized, (iii) the nitrogen heteroatom may optionally be quaternized, and (iv) any of the above rings may be fused to a benzene ring. Representative heterocycloalkyl groups include, but are not limited to, [1,3]dioxolane, pyrrolidinyl, pyrazolinyl, pyrazolidinyl, imidazolinyl, imidazolidinyl, piperidinyl, piperazinyl, oxazolidinyl, isoxazolidinyl, morpholinyl, thiazolidinyl, isothiazolidinyl, and tetrahydrofuryl and the like.
  • The terms “heterocyclic” or “heterocycle” or “heterocyclyl” refer to a saturated (e.g., “heterocycloalkyl”), partially unsaturated (e.g., “heterocycloalkenyl” or “heterocycloalkynyl”) or completely unsaturated (e.g., “heteroaryl”) ring system preferably containing 3 to 14 ring atoms, where at least one of the ring atoms is a heteroatom (i.e., nitrogen, oxygen or sulfur), with the remaining ring atoms being independently selected from the group consisting of carbon, nitrogen, oxygen and sulfur. A heterocyclic or heterocycle or heterocyclyl may be, without limitation, a single ring, or two or more fused or covalently linked rings, or bridged or Spiro rings. A heterocyclyl group can be linked to the parent molecular moiety via any substitutable carbon or nitrogen atom in the group, provided that a stable molecule results. A heterocyclyl may be, without limitation, a single ring. Non-limiting examples of single-ring heterocyclyls include furanyl, dihydrofuranyl, pyrrolyl, isopyrrolyl, pyrrolinyl, pyrrolidinyl, imidazolyl, isoimidazolyl, imidazolinyl, imidazolidinyl, pyrazolyl, pyrazolinyl, pyrazolidinyl, triazolyl, tetrazolyl, dithiolyl, oxathiolyl, oxazolyl, isoxazolyl, thiazolyl, isothiazolyl, thiazoliriyl, isothiazolinyl, thiazolidinyl, isothiazolidinyl, thiodiazolyl, oxathiazolyl, oxadiazoly, pyranyl, dihydropyranyl, pyrridinyl, piperidinyl, pyridazinyl, pyrimidinyl, pyrazinyl, piperazinyl, triazinyl, isoxazinyl, oxazolidinyl, isoxazolidinyl, oxathiazinyl, oxadiazinyl, morpholinyl, azepinyl, oxepinyl, thiepinyl, or diazepinyl. A heterocyclyl may also include, without limitation, two or more rings fused together, such as, for example, naphthyridinyl, thiazolpyrimidinyl, thienopyrimidinyl, pyrimidopyrimidinyl, or pyridopyrimidinyl. A heterocyclyl may comprise one or more sulfur atoms as ring members; and in some cases, the sulfur atom(s) is oxidized to SO or SO2. The nitrogen heteroatom(s) in a heterocyclyl may or may not be quaternized, and may or may not be oxidized to N-oxide. In addition, the nitrogen heteroatom(s) may or may not be N-protected.
  • The terms “optionally substituted”, “optionally substituted alkyl,” “optionally substituted “optionally substituted alkenyl,” “optionally substituted alkynyl”, “optionally substituted carbocyclic,” “optionally substituted aryl”, “optionally substituted heteroaryl,” “optionally substituted heterocyclic,” and any other optionally substituted group as used herein, refer to groups that are substituted or unsubstituted by independent replacement of one, two, or three or more of the hydrogen atoms thereon with typical substituents including, but not limited to:
  • —F, —Cl, —Br, —I,
  • —OH, protected hydroxy, alkoxy, oxo, thiooxo,
  • —NO2, —CN, CF3, N3,
  • —NH2, protected amino, —NH alkyl, —NH alkenyl, —NH alkynyl, —NH cycloalkyl, —NH— aryl, —NH-heteroaryl, —NH-heterocyclic, -dialkylamino, -diarylamino, -diheteroarylamino,
  • —O— alkyl, —O— alkenyl. —O— alkynyl, —O— cycloalkyl, —O-aryl, —O-heteroaryl, —O— heterocyclic,
  • —C(O)— alkyl, —C(O)— alkenyl, —C(O)— alkynyl, —C(O)— carbocyclyl, —C(O)-aryl, —C(O)— heteroaryl, —C(O)-heterocyclyl,
  • —CONH2, —CONH— alkyl, —CONH— alkenyl, —CONH— alkynyl, —CONH-carbocyclyl, —CONH-aryl, —CONH-heteroaryl, —CONH-heterocyclyl,
  • —OCO2— alkyl, —OCO2— alkenyl, —OCO2— alkynyl, —OCO2— carbocyclyl, —OCO2-aryl, —OCO2-heteroaryl, —OCO2-heterocyclyl, —OCONH2, —OCONH— alkyl, —OCONH— alkenyl, OCONH— alkynyl, —OCONH— carbocyclyl, —OCONEE- aryl, —OCONH— heteroaryl, —OCONH— heterocyclyl,
  • —NHC(O)— alkyl, —NHC(O)— alkenyl, —NHC(O)— alkynyl, —NHC(O)— carbocyclyl, —NHC(O)-aryl, —NHC(O)-heteroaryl, —NHC(O)-heterocyclyl, —NHCO2— alkyl, —NHCO2— alkenyl, —NHCO2— alkynyl, —NHCO2— carbocyclyl, —NHCO2— aryl, —NHCO2— heteroaryl, —NHCO2-heterocyclyl, —NHC(O)NH2, —NHC(O)NH— alkyl, —NHC(O)NH— alkenyl, —NHC(O)NH— alkenyl, —NHC(O)NH— carbocyclyl, —NHC(O)NH-aryl, —NHC(O)NH-heteroaryl, —NHC(O)NH— heterocyclyl, NHC(S)NH2, —NHC(S)NH— alkyl, —NHC(S)NH— alkenyl, —NHC(S)NH— alkynyl, —NHC(S)NH— carbocyclyl, —NHC(S)NH-aryl, —NHC(S)NH-heteroaryl, —NHC(S)NH-heterocyclyl, —NHC(NH)NH2, —NHC(NH)NH— alkyl, —NHC(NH)NH— -alkenyl, —NHC(NH)NH— alkenyl, —NHC(NH)NH— carbocyclyl, —NHC(NE)NH-aryl, —NHC(NH)NH-heteroaryl, —NHC(NH)NH-heterocyclyl, —NHC(NH)— alkyl, —NHC(NH)— alkenyl, —NHC(NH)— alkenyl, —NHC(NH)-carbocyclyl, —NHC(NH)-aryl, —NHC(NH)-heteroaryl, —NHC(NH)-heterocyclyl,
  • —C(NH)NH— alkyl, —C(NH)NH— alkenyl, —C(NH)NH— alkynyl, —C(NH)NH— carbocyclyl, C(NH)NH-aryl, —C(NH)NH-heteroaryl, —C(NH)NH-heterocyclyl,
  • —S(O)— alkyl, —S(O)— alkenyl, —S(O)— alkynyl, —S(O)— carbocyclyl, —S(O)-aryl, —S(O)— heteroaryl, —S(O)-heterocyclyl —SO2NH2, —SO2NH— alkyl, —SO2NH— alkenyl, —SO2NH— alkynyl, —SO2NH— carbocyclyl, —SO2NH— aryl, —SO2NH— heteroaryl, —SO2NH— heterocyclyl,
  • —NHSO2— alkyl, —NHSO2— alkenyl, NIESO2— alkynyl, —NHSO2— carbocyclyl, —NHSO2-aryl, —NHSO2-heteroaryl, —NHSO2-heterocyclyl,
  • —CH2NH2, —CH2SO2CH3,
  • -alkyl, -alkenyl, -alkynyl, -aryl, -arylalkyl, -heteroaryl, -heteroarylalkyl, -heterocycloalkyl, -cycloalkyl, -carbocyclic, -heterocyclic, polyalkoxyalkyl, polyalkoxy, methoxymethoxy, -methoxyethoxy, —SH, —S— alkyl, —S— alkenyl, —S— alkynyl, —S— carbocyclyl, —S-aryl, —S-heteroaryl, —S-heterocyclyl, or methylthiomethyl.
  • It is understood that the aryls, heteroaryls, carbocycles, heterocycles, alkyls, and the like can be further substituted.
  • The terms “halo” and “halogen,” as used herein, refer to an atom selected from fluorine, chlorine, bromine and iodine.
  • Any divalent group having two points of connection to two other groups may be aligned in either direction, e.g., the term “—C(O)O-” is interpreted to include both —C(O)O— and —OC(O)—.
  • The term “subject” as used herein refers to a mammal. A subject therefore refers to, for example, dogs, cats, horses, cows, pigs, guinea pigs, and the like. Preferably the subject is a human. When the subject is a human, the subject may be either a patient or a healthy human.
  • The term “leaving group,” or “LG”, as used herein, refers to any group that leaves in the course of a chemical reaction involving the group and includes but is not limited to halogen, brosylate, mesylate, tosylate, triflate, p-nitrobenzoate, phosphonate groups, for example.
  • The term “protected hydroxy,” as used herein, refers to a hydroxy group protected with a hydroxy protecting group, as defined above, including benzoyl, acetyl, trirnethylsilyl, triethylsilyl, methoxyrnethyl groups, for example.
  • The term “hydroxy protecting group,” as used herein, refers to a labile chemical moiety which is known in the art to protect a hydroxy group against undesired reactions during synthetic procedures. After said synthetic procedure(s) the hydroxy protecting group as described herein may be selectively removed. Hydroxy protecting groups as known in the are described generally in T. H. Greene and P. G. M. Wuts, Protective Groups in Organic Synthesis, 3rd edition, John Wiley & Sons, New York (1999). Examples of hydroxy protecting groups include benzyloxycarbonyl, 4-nitrobenzyloxycarbonyl, 4-bromobenzyloxycarbonyl, 4-methoxybenzyloxy-carbonyl, methoxycarbonyl, tert-butoxycarbonyl, isopropoxycarbonyl, diphenylmethoxycarbonyl, 2,2,2-trichloroethoxycarbonyl, 2-(trimethylsilypethoxycarbonyl, 2-furfuryloxycarbonyl, allyloxycarbonyl, acetyl, formyl, chloroacetyl, trifluoroacetyl, methoxyacetyl, phenoxyacetyl, benzoyl, methyl, t-butyl, 2,2,2-trichloroethyl, 2-trimethylsilyl ethyl, 1,1-dimethyl-2-propenyl, 3-methyl-3-butenyl, allyl, benzyl, para-methoxybenzyldiphenylmethyl, triphenylmethyl(trityl), tetrahydrofuryl, methoxymethyl, methylthiomethyl, benzyloxymethyl, 2,2,2-triehloroethoxymethyl, 2-(trimethylsilypethoxymethyl, methanesulfonyl, para-toluenesulfonyl, tri methyl silyl, triethylsilyl, triisopropylsilyl, and the like. Preferred hydroxy protecting groups for the present invention are acetyl (Ac or —C(O)CH3), benzoyl (Bz or —C(O)C6H5), and trimethylsilyl (TMS or —Si(CH3)3).
  • The term “amino protecting group,” as used herein, refers to a labile chemical moiety which is known in the art to protect an amino group against undesired reactions during synthetic procedures. After said synthetic procedure(s) the amino protecting group as described herein may be selectively removed. Amino protecting groups as known in the are described generally in T. H. Greene and P. G. M. Wuts, Protective Groups in Organic Synthesis, 3rd edition, John Wiley & Sons, New York (1999). Examples of amino protecting groups include, but are not limited to, t-butoxycarbonyl, 9-fluorenylmethoxycarbonyl, benzyloxycarbonyl, and the like.
  • The term “protected amino,” as used herein, refers to an amino group protected with an amino protecting group as defined above.
  • The term “alkylamino” refers to a group having the structure —N(RaRb), where Ra and Rb are independent 1-1 or alkyl.
  • As used herein, the term “pharmaceutically acceptable salt” refers to those salts of the compounds formed by the process of the present invention which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and lower animals without undue toxicity, irritation, allergic response and the like, and are commensurate with a reasonable benefit/risk ratio. Pharmaceutically acceptable salts are well known in the art. For example, S. M. Berge, et al. describes pharmaceutically acceptable salts in detail in J. Pharmaceutical Sciences, 66: 1-19 (1977). The salts can be prepared in situ during the final isolation and purification of the compounds of the invention, or separately by reacting the tree base function with a suitable organic acid. Examples of pharmaceutically acceptable salts include, but are not limited to, nontoxic acid addition salts, or salts of an amino group formed with inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid or with organic acids such as acetic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange. Other pharmaceutically acceptable salts include, but are not limited to, adipate, alginate, ascorbate, aspartate, benzenesulfonate, benzoate, bisulfate, borate, butyrate, camphorate, camphorsulfonate, citrate, cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, formate, fumarate, glucoheptonate, glycerophosphate, gluconate, hemisulfate, heptanoate, hexanoate, hydroiodide, 2-hydroxy-ethanestilfonate, lactobionate, lactate, laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, pamoate, pectinate, persulfate, 3-plienylpropionate, phosphate, picrate, pivalate, propionate, stearate, succinate, sulfate, tartrate, thiocyanate, p-toluenesulfonate, undecanoate, valerate salts, and the like. Representative alkali or alkaline earth metal salts include sodium, lithium, potassium, calcium, or magnesium salts, and the like. Further pharmaceutically acceptable salts include, when appropriate, nontoxic ammonium, quaternary ammonium, and amine cations formed using counterions such as halide, hydroxide, carboxylate, sulfate, phosphate, nitrate, alkyl having from 1 to 6 carbon atoms, sulfonate and aryl sulfonate.
  • As used herein, the term “pharmaceutically acceptable ester” refers to esters of the compounds formed by the process of the present invention which hydrolyze in vivo and include those that break down readily in the human body to leave the parent compound or a salt thereof. Suitable ester groups include, for example, those derived from pharmaceutically acceptable aliphatic carboxylic acids, particularly alkanoic, alkenoic, cycloalkanoic and alkanedioic acids, in which each alkyl or alkenyl moiety advantageously has not more than 6 carbon atoms. Examples of particular esters include, but are not limited to, formates, acetates, propionates, butyrates, acrylates and ethylsuccinates.
  • The term “pharmaceutically acceptable prodrugs” as used herein refers to those prodrugs of the compounds formed by the process of the present invention which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and lower animals with undue toxicity, irritation, allergic response, and the like, commensurate with a reasonable benefit/risk ratio, and effective for their intended use, as well as the zwitterionic forms, where possible, of the compounds of the present invention. “Prodrug”, as used herein means a compound which is convertible in vivo by metabolic means (e.g. by hydrolysis) to afford any compound delineated by the formulae of the instant invention. Various forms of prodrugs are known in the art, for example, as discussed in Bundgaard, (ed.), Design of Prodrugs, Elsevier (1985); Widder, et al. (ed.), Methods in Enzymology, vol. 4, Academic Press (1985); Krogsgaard-Larsen, et al., (ed). “Design and Application of Prodrugs, Textbook of Drug Design and Development, Chapter 5, 113-191 (1991); Bundgaard, et al., Journal of Drug Deliver Reviews, 8:1-38(1992); Bundgaard, J. of Pharmaceutical Sciences, 77:285 et seq. (1988); Iliguchi and Stella (eds.) Prodrugs as Novel Drug Delivery Systems, American Chemical Society (1975); and Bernard Testa & Joachim Mayer, “Hydrolysis In Drug And Prodrug Metabolism: Chemistry, Biochemistry And Enzymology,” john Wiley and Sons, Ltd. (2002).
  • This invention also encompasses pharmaceutical compositions containing, and methods of treating viral infections through administering, pharmaceutically acceptable prodrugs of compounds of the invention. For example, compounds of the invention having free amino, amido, hydroxy or carboxylic groups can be converted into prodrugs. Prodrugs include compounds wherein an amino acid residue, or a polypeptide chain of two or more (e.g., two, three or four) amino acid residues is covalently joined through an amide or ester bond to a free amino, hydroxy or carboxylic acid group of compounds of the invention. The amino acid residues include but are not limited to the 20 naturally occurring amino acids commonly designated by three letter symbols and also includes 4-hydroxyproline, hydroxylysine, demosine, isodemosine, 3-methylhistidine, norvalin, beta-alanine, gamma-aminobutyric acid, citrulline, homocysteine, homoserine, ornithine and methionine sulfone. Additional types of prodrugs are also encompassed. For instance, free carboxyl groups can be derivatized as amides or alkyl esters. Free hydroxy groups may be derivatized using groups including but not limited to hemisuccinates, phosphate esters, dimethylaminoacetates, and phosphoryloxymethyloxy carbonyls, as outlined in Advanced Drug Delivery Reviews, 1996, 19, 1 15. Carbamate prodrugs of hydroxy and amino groups are also included, as are carbonate prodrugs, sulfonate esters and sulfate esters of hydroxy groups. Derivatization of hydroxy groups as (acyloxy)methyl and (acyloxy)ethyl ethers wherein the acyl group may be an alkyl ester, optionally substituted with groups including but not limited to ether, amine and carboxylic acid functionalities, or where the acyl group is an amino acid ester as described above, are also encompassed. Prodrugs of this type are described in J. Med. Chem, 1996, 39, 10. Free amines can also be derivatized as amides, sulfonamides or phosphonamides. All of these prodrug moieties may incorporate groups including but not limited to ether, amine and carboxylic acid functionalities
  • Combinations of substituents and variables envisioned by this invention are only those that result in the formation of stable compounds. The term “stable”, as used herein, refers to compounds which possess stability sufficient to allow manufacture and which maintains the integrity of the compound for a sufficient period of time to be useful for the purposes detailed herein (e.g., therapeutic or prophylactic administration to a subject).
    • Pharmaceutical Compositions
  • The pharmaceutical compositions of the present invention comprise a therapeutically effective amount of a compound of the present invention formulated together with one or more pharmaceutically acceptable carriers. As used herein, the term “pharmaceutically acceptable carrier” means a non-toxic, inert solid, semi-solid or liquid filler, diluent, encapsulating material or formulation auxiliary of any type. The pharmaceutical compositions of this invention can be administered to humans and other animals orally, rectally, parenterally, intracisternally, intravaginally, intraperitoneally, topically (as by powders, ointments, or drops), buccally, or as an oral or nasal spray.
  • Liquid dosage forms for oral administration include pharmaceutically acceptable emulsions, microemulsions, solutions, suspensions, syrups, and elixirs. In addition to the active compounds, the liquid dosage forms may contain inert diluents commonly used in the art such as, for example, water, alcohol or other solvents, solubilizing agents and emulsifiers such as ethyl alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, propylene glycol, 1,3-butylene glycol, polysorbate, dimethylformamide, oils (in particular, cottonseed, groundnut, corn, germ, olive, castor, and sesame oils), mono- or di-glycerides, glycerol, tetrahydrofurfuryl alcohol, polyethylene glycols and fatty acid esters of sorbitan, and mixtures thereof. Besides inert diluents, the oral compositions can also include adjuvants such as wetting agents, emulsifying and suspending agents, antioxidants, sweetening, flavoring, and perfuming agents. The liquid dosage form can also be encapsulated in a gelatin capsule, wherein a compound of the present invention can be dissolved in a pharmaceutically acceptable canter containing, for example, one or more soltibilizating agents (e.g., polysorbate 80 and mono and diglycerides), and other suitable excipients (e.g., an antioxidants such as ascorbyl palmitate, or a sweetening or flavoring agent).
  • Injectable preparations, for example, sterile injectable aqueous or oleaginous suspensions may be formulated according to the known art using suitable dispersing or wetting agents and suspending agents. The sterile injectable preparation may also be a sterile injectable solution, suspension or emulsion in a nontoxic parenterally acceptable diluent or solvent, for example, as a solution in 1,3-butanediol. Among the acceptable vehicles and solvents that may be employed are water, Ringer's solution, U.S.P. and isotonic sodium chloride solution. In addition, sterile, fixed oils are conventionally employed as a solvent or suspending medium. For this purpose any bland fixed oil can be employed including synthetic mono- or diglycerides. In addition, fatty acids such as oleic acid are used in the preparation of injectables.
  • In order to prolong the effect of a drug, it is often desirable to slow the absorption of the drug from subcutaneous or intramuscular injection. This may be accomplished by the use of a liquid suspension of crystalline or amorphous material with poor water solubility. The rate of absorption of the drug then depends upon its rate of dissolution which, in turn, may depend upon crystal size and crystalline form. Alternatively, delayed absorption of a parenterally administered drug form is accomplished by dissolving or suspending the drug in an oil vehicle. Immediate release forms are also contemplated by the present invention.
  • Compositions for rectal or vaginal administration are preferably suppositories which can be prepared by mixing the compounds of this invention with suitable non-irritating excipients or carriers such as cocoa butter, polyethylene glycol or a suppository wax which are solid at ambient temperature but liquid at body temperature and therefore melt in the rectum or vaginal cavity and release the active compound.
  • Solid compositions of a similar type may also be employed as fillers in soft and hard-filled gelatin capsules using such excipients as lactose or milk sugar as well as high molecular weight polyethylene glycols and the like.
  • The active compounds can also be in micro-encapsulated form with one or more excipients as noted above
  • The solid dosage forms of tablets, dragees, capsules, pills, and granules can be prepared with coatings and shells such as enteric coatings, release controlling coatings and other coatings well known in the pharmaceutical formulating art. In such solid dosage forms the active compound may be admixed with at least one inert diluent such as sucrose, lactose or starch. Such dosage forms may also comprise, as is normal practice, additional substances other than inert diluents, e.g., tableting lubricants and other tableting aids such a magnesium stearate and microcrystalline cellulose. In the case of capsules, tablets and pills, the dosage forms may also comprise buffering agents.
  • Preferably, a compound of the invention is formulated in a solid dispersion, where the compound can be molecularly dispersed in a matrix which comprises a pharmaceutically acceptable, hydrophilic polymer. The matrix may also contain a pharmaceutically acceptable surfactant. Suitable solid dispersion technology for formulating a compound of the invention includes, but is not limited to, melt extrusion, spray drying, or solvent evaporization.
  • Dosage forms for topical or transdermal administration of a compound of this invention include ointments, pastes, creams, lotions, gels, powders, solutions, sprays, inhalants or patches. The active component is admixed under sterile conditions with a pharmaceutically acceptable carrier and any needed preservatives or buffers as may be required. Ophthalmic formulation, ear drops, eye ointments, powders and solutions are also contemplated as being within the scope of this invention.
  • The ointments, pastes, creams and gels may contain, in addition to an active compound of this invention, excipients such as animal and vegetable fats, oils, waxes, paraffins, starch, tragacanth, cellulose derivatives, polyethylene glycols, silicones, bentonites, silicic acid, talc and zinc oxide, or mixtures thereof.
  • Powders and sprays can contain, in addition to the compounds of this invention, excipients such as lactose, talc, silicic acid, aluminum hydroxide, calcium silicates and polyamide powder, or mixtures of these substances. Sprays can additionally contain customary propellants such as chlorafluorohydrocarbons.
  • Transdermal patches have the added advantage of providing controlled delivery of a compound to the body. Such dosage forms can be made by dissolving or dispensing the compound in the proper medium. Absorption enhancers can also be used to increase the flux of the compound across the skin. The rate can be controlled by either providing a rate controlling membrane or by dispersing the compound in a polymer matrix or gel.
  • According to the methods of treatment of the present invention, viral infections are treated or prevented in a subject, such as a human or another animal, by administering to the subject a therapeutically effective amount of a compound of the invention (or a pharmaceutically acceptable salt, ester or prodrug thereof), in such amounts and for such time as is necessary to achieve the desired result. The term “therapeutically effective amount” of a compound of the invention, as used herein, means a sufficient amount of the compound so as to decrease the viral load in a subject and/or decrease the subject's HCV symptoms. As is well understood in the medical arts a therapeutically effective amount of a compound of this invention will be at a reasonable benefit/risk ratio applicable to any medical treatment.
  • Antiviral Activity
  • An inhibitory amount or dose of the compounds of the present invention may range from about 0.1 mg/Kg to about 500 mg/Kg, alternatively from about 1 to about 50 mg/Kg. Inhibitory amounts or doses will also vary depending on route of administration, as well as the possibility of co-usage with other agents.
  • According to the methods of treatment of the present invention, viral infections are treated or prevented in a subject such as a human or lower mammal by administering to the subject an anti-hepatitis C virally effective amount or an inhibitory amount of a compound of the present invention, in such amounts and for such time as is necessary to achieve the desired result. An additional method of the present invention is the treatment of biological samples with an inhibitory amount of a compound of composition of the present invention in such amounts and for such time as is necessary to achieve the desired result.
  • The term “anti-hepatitis C virally effective amount” of a compound of the invention, as used herein, means a sufficient amount of the compound so as to decrease the viral load in a biological sample or in a subject. As well understood in the medical arts, an anti-hepatitis C virally effective amount of a compound of this invention will be at a reasonable benefit/risk ratio applicable to any medical treatment.
  • The term “inhibitory amount” of a compound of the present invention means a sufficient amount to decrease the hepatitis C viral load in a biological sample or a subject. It is understood that when said inhibitory amount of a compound of the present invention is administered to a subject it will be at a reasonable benefit/risk ratio applicable to any medical treatment as determined by a physician. The term “biological sample(s),” as used herein, means a substance of biological origin, which may be intended for administration to a subject. Examples of biological samples include, but are not limited to, blood and components thereof such as plasma, platelets, subpopulations of blood cells and the like; organs such as kidney, liver, heart, lung, and the like; sperm and ova; bone marrow and components thereof; or stem cells. Thus, another embodiment of the present invention is a method of treating a biological sample by contacting said biological sample with an inhibitory amount of a compound or pharmaceutical composition of the present invention.
  • Upon improvement of a subject's condition, a maintenance dose of a compound, composition or combination of this invention may be administered, if necessary. Subsequently, the dosage or frequency of administration, or both, may be reduced, as a function of the symptoms, to a level at which the improved condition is retained when the symptoms have been alleviated to the desired level, treatment should cease. The subject may, however, require intermittent treatment on a long-term basis upon any recurrence of disease symptoms.
  • It will be understood, however, that the total daily usage of the compounds and compositions of the present invention will be decided by the attending physician within the scope of sound medical judgrient. The specific inhibitory dose for any particular patient will depend upon a variety of factors including the disorder being treated and the severity of the disorder; the activity of the specific compound employed; the specific composition employed; the age, body weight, general health, sex and diet of the patient; the time of administration, route of administration, and rate of excretion of the specific compound employed; the duration of the treatment; drugs used in combination or coincidental with the specific compound employed; and like factors well known in the medical arts.
  • The total daily inhibitory dose of the compounds of this invention administered to a subject in single or in divided doses can be in amounts, for example, from 0.01 to 50 mg/kg body weight or more usually from 0.1 to 25 mg/kg body w eight. Single dose compositions may contain such amounts or submultiples thereof to make up the daily dose. In one embodiment, treatment regimens according to the present invention comprise administration to a patient in need of such treatment from about 10 mg to about 1000 mg of the compound(s) of this invention per day in single or multiple doses. In another embodiment, the treatment regimen comprises administration to a patient in need of such treatment from about 25 mg to about 6000 mg of a compound(s) of this invention per day in single or multiple doses, either with or without a cytochrome P450 monooxygenase inhibitor such as ritonavir. The suitable daily dose for the co-administered cytochrorne P450 monooxygenase inhibitor (e.g., ritonavir) can range, without limitation, from 10 to 200 mg. Preferably, a compound(s) of the present invention, or a combination of a compound(s) of the invention and ritonavir, is administered once daily or twice daily to achieve the desired daily dose amount. For instance, when used without ritonavir, a compound of the present invention can be administered to a patient twice a day with a total daily dose of 4000, 4200, 4400, 4600, 4800 or 5000 mg. For another instance, when used in combination with ritonavir, a compound of the present invention can be administered to a patient once or twice a day with a total daily dose of 200, 400, 600 or 800 mg, where the amount of ritonavir can be 25, 50 or 100 mg per administration.
  • Synthetic Methods
  • The compounds and processes of the present invention will be better understood in connection with the following synthetic examples that illustrate the methods by which the compounds of the invention may be prepared.
  • Definitions of variables in the structures in the schemes herein are commensurate with those of corresponding positions in the formulae delineated herein.
  • The compounds described herein contain one or more asymmetric centers and thus give rise to enantiomers, diastereomers, and other stereoisomeric forms that may be defined, in terms of absolute stereochemistry, as (R)— or (S)—, or as (D)- or (L)- for amino acids. The present invention is meant to include all such possible isomers, as well as their racemic and optically pure forms. Optical isomers may be prepared from their respective optically active precursors by the procedures described above, or by resolving the racernic mixtures. The resolution can be carried out in the presence of a resolving agent, by chromatography or by repeated crystallization or by some combination of these techniques which are known to those skilled in the art. Further details regarding resolutions can be found in Jacques, et al., Enantiomers, Racemates, and Resolutions (John Wiley & Sons, 1981). When the compounds described herein contain olefinic double bonds or other centers of geometric asymmetry, and unless specified otherwise, it is intended that the compounds include both E and Z geometric isomers. Likewise, all tautomeric forms are also intended to be included. The configuration of any carbon-carbon double bond appearing herein is selected for convenience only and is not intended to designate a particular configuration unless the text so states; thus a carbon-carbon double bond depicted arbitrarily herein as trans may be cis, trans, or a mixture of the two in any proportion.
  • The synthesized compounds can be separated from a reaction mixture and further purified by a method such as column chromatography, high pressure liquid chromatography, or recrystallization. As can be appreciated by the skilled artisan, further methods of synthesizing the compounds of the formulae herein will be evident to those of ordinary skill in the art. Additionally, the various synthetic steps may be performed in an alternate sequence or order to give the desired compounds. In addition, the solvents, temperatures, reaction durations, etc. delineated herein are for purposes of illustration only and one of ordinary skill in the art will recognize that variation of the reaction conditions can produce the desired bridged macrocyclic products of the present invention. Synthetic chemistry transformations and protecting group methodologies (protection and deprotection) useful in synthesizing the compounds described herein are known in the art and include, for example, those such as described in R. Larock, Comprehensive Organic Transformations, VCR Publishers (1989); T.W. Greene and P.G.M. Wuts, Protective Groups in Organic Synthesis, 2d. Ed., John Wiley and Sons (1991); L. Fieser and M. Fieser, Fieser and Fieser's Reagents for Organic Synthesis, John Wiley and Sons (1994); and L. Paquette, ed., Encyclopedia of Reagents for Organic Synthesis, John Wiley and Sons (1995), and subsequent editions thereof
  • The compounds of this invention may be modified by appending various functionalities via any synthetic means delineated herein to enhance selective biological properties. Such modifications are known in the art and include those which increase biological penetration into a given biological system (e.g., blood, lymphatic system, central nervous system), increase oral availability, increase solubility to allow administration by injection, alter metabolism and alter rate of excretion.
  • The recitation of a listing of chemical groups in any definition of a variable herein includes definitions of that variable as any single group or combination of listed groups. The recitation of an embodiment for a variable herein includes that embodiment as any single embodiment or in combination with any other embodiments or portions thereof.
    • EXAMPLES
  • The compounds and processes of the present invention will be better understood in connection with the following examples, which are intended as an illustration only and not to limit the scope of the invention. The following examples can be prepared according to the schemes as described above, or according to the synthetic steps as described below. Various changes and modifications to the disclosed embodiments will be apparent to those skilled in the art and such changes and modifications including, without limitation, those relating to the chemical structures, substituents, derivatives, formulations and/or methods of the invention may be made without departing from the spirit of the invention and the scope of the appended claims.
  • The chemical structures herein contain certain —NH—, —NH2 (amino) and OH (hydroxyl) groups where the corresponding hydrogen atom(s) may not explicitly appear; however they are to be read as —NH—, —NH2 or —OH as the case may be.
  • Those of ordinary skill in the art are aware of the biological assays utililized to test the compounds of the invention.
    • Example 1 tert-butyl (2R,6S,13aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxo-2-(quinoxalin-2-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate
  • Figure US20150119319A1-20150430-C00018
    • Example 1a (2S,6S,13aS,14aR,16aS,Z)-ethyl 2-(benzoyloxy)-6-(tert-butoxycarbonylamino)-5,16-dioxo-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • To a solution of (2S,6S,13aS,14aR,16aS,Z)-ethyl 6-(tert-butoxycarbonylamino)-2-hydroxy-5,16-dioxo-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (2.0 g, 4.1 mmol) in dichloromethane (4.1 ml) cooled to 0° C. was added N-ethyl-N-isopropylpropan-2-amine (2.83 ml, 16.2 mmol) and 1-methylimidazole (0.097 ml, 1.2 mmol) followed by benzoic anhydride (1.83 g, 8.10 mmol). The solution was stirred at room temperature for 16 h, DMAP (9.3 mg, 0.076 mmol) was added and the reaction mixture stirred for 2.5 h. The reaction mixture was diluted with ethyl acetate (150 ml) and washed with HCl (1 N, 50 ml×2), water and brine. The organic layer was dried (anhydrous sodium sulfate), concentrated and purified by flash chromatogaphy on silica gel (dichloromethane/methanol=40/1) to provide the title compound (2.06 g, 83% yield) as a foamy white solid.
    • Example 1b (2S,6S,12S,13aS,14aR,16aS)-ethyl 2-(benzoyloxy)-6-(tert-butoxycarbonylamino)-12-hydroxy-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • Figure US20150119319A1-20150430-C00019
  • To a solution of (2S,6S,13aS,14aR,16aS,Z)-ethyl 2-(benzoyloxy)-6-(tert-butoxycarbonylamino)-5,16-dioxo-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocycl opropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (2.06 g, 3.45 mmol) in tetrahydrofuran (34 ml) was added borane-tetrahydrofuran complex (19 ml, 1M, 19.00 mmol) in one portion at 0° C. The mixture was stirred at 0° C. for 20 min and then at room temperature for 20 min. The reaction mixture was quenched by adding water (70 ml) dropwise at 0° C. followed by the addition of sodium perborate tetrahydrate (2.92 g, 19.0 mmol). The mixture was stirred at room temperature overnight. The reaction mixture was diluted with ethyl acetate (300 ml) and washed with water (50 ml×2) and brine (50 ml). The combined aqueous layer was back-extracted with ethyl acetate (75 ml×2). The organic layers were dried (anhydrous sodium sulfate) and concentrated to give a white foamy solid (3.2 g). The residue was purified by flash chromatography on silica gel (dichloromethane/methanol=40/1, 30/1) followed by a second purification by reverse phase RPLC (acetonitrile/water (0.1% TFA)=30/70 to 100/0, 15 min) to provide (2S,6S,12S,13aS,14aR,16aS)-ethyl 2-(benzoyloxy)-6-(tert-butoxyearbonylamino)-12-hydroxy-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (0.43 g, 0.70 mmol, 20% yield).
    • Example 1c (2S,6S,13aS,14aR,16aS)-ethyl 2-(berizoyloxy)-6-(tert-butoxycarbonylamino)-5,12,16-trioxooetadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • Figure US20150119319A1-20150430-C00020
  • To a solution of oxalyl chloride (0.092 ml, 1.05 mmol) in dichloromethane (1.75 ml) at −78° C. was added dropwise DMSO (0.149 ml, 2.10 mmol). The reaction mixture was stirred for 10 min and then a solution of (2S,6S,12S,13aS,14aR,16aS)-ethyl 2-(benzoyloxy)-6-(tert-butoxycarbonylamino)-12-hydroxy-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (Example 1b, 0.43 g, 0.698 mmol) in dichloromethane (4 ml) was added dropwise. The reaction mixture was stirred at −78° C. for 30 min and triethylamine (0.730 ml, 5.24 mmol) was added dropwise. The reaction mixture was stirred at −78° C. for 15 min and warmed to room temperature and stirred for 1.5 hr. The reaction mixture was quenched with water, stirred for 30 min and extracted with dichloromethane and the organic layer dried over anhydrous sodium sulfate, filtered, and evaporated under reduced pressure. The residue was purified by flash chromatography on silica gel (dichloromethane/methanol=40/1) to provide the title compound (2S,6S,13aS,14aR,16aS)-ethyl 2-(benzoyloxy)-6-(tert-butoxycarbonylamino)-5,12,16-trioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (0.36 g, 0.59 mmol, 84% yield).
    • Example 1d (2S,6S,13aS,14aR,16aS)-ethyl 2-(benzoyloxy)-6-(tert-butoxycarbonylamino)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • Figure US20150119319A1-20150430-C00021
  • To (2S,6S,13aS,14aR,16aS)-ethyl 2-(benzoyloxy)-6-(tert-butoxycarbonylamino)-5,12,16-trioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (Example 1c, 307 mg, 0.500 mmol) was added MORPHOLINOSULFUR TRIFLUORIDE (2.44 rnL, 20.0 mmol). The mixture was sonicated to dissolve all solids. The solution was stirred at room temperature for 16 h., diluted with ethyl acetate, and added dropwise to a mixture of ice and aq. sodium carbonate (10%, 5 ml). The layers were separated, and the aqueous layer was back-extracted with ethyl acetate (10 ml×2). The combined organic layer was washed with 50% brine and dried over anhydrous sodium sulfate, filtered, and evaporated under reduced pressure to give a light yellow oil (75 mg). This material was purified by reverse phase HPLC (acetonitrile/water (0.1?/WITA)=50/50 to 100/0, 15 min) to provide the title compound (2S,6S,13aS,14aR,16aS)-ethyl 2-(benzoyloxy)-6-(tert-butoxycarbonyl amino)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (64.9 mg, 0.102 mmol, 20.4% yield).
    • Example 1e (2S,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-12,12-difluoro-2-hydroxy-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • Figure US20150119319A1-20150430-C00022
  • To a solution of (2S,6S,13aS,14aR,16aS)-ethyl 2-(benzoyloxy)-6-(tert-butoxycarbonylamino 12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (Example 1d, 94.75 mg, 0.149 mmol) in ethanol (0.414 ml) at 0° C. was added dropwise a solution of KOH (0.25 ml, 0.250 mmol, 1 N in ethanol). The solution was stirred at 0° C. for 50 min and LC/MS showed completion. The reaction mixture was quenched by dropwise addition of HCl (1 N in dioxane/ethyl acetate, 0.25 ml) at 0° C. Another portion of (2 S,6S,13 aS,14aR,16aS)-ethyl 2-(benzoyloxy)-6-(tert-butoxycarbonylamino)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (14.36 mg) was reacted under similar condition. Materials from these two reactions were combined and purified by reverse phase HPLC (acetonitrile/water (0.1% TFA)=30/70 to 100/0, 15 min) to provide the title compound (2S,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-12,12-difluoro-2-hydroxy-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (91.3 mg) MS (ESI): m/z=532.2 [M+H].
    • Example 1f (2R,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-12,12-difluoro-5,16-dioxo-2-(quinoxalin-2-ylox))octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • Figure US20150119319A1-20150430-C00023
  • To (2S,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-12,12-difluoro-2-hydroxy-5,16-dioxooctadecahydrocyclopmpa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (Example 1e, 19 mg, 0.036 mmol) was added 2-hydroxyquinoxaline (8.06 mg, 0.055 mmol) followed by tetrahydrofuran (357 μl). Triphenylphosphine (15.23 mg, 0.058 mmol) was added and the solution was cooled to 0° C. DIAD (10.5 μl, 0.054 mmol) was added dropwise and the mixture was stirred at 0° C. for 15 min and at room temperature for 20 hr. The reaction mixture was diluted with dichloromethane and filtered through Celite. The solvent was evaporated under reduced pressure and the residue was purified by prep-TLC (dichloromethane/ethyl acetate=3/2, 2×) to provide the title compound (2R,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-12,12-difluoro-5,16-dioxo-2-(quinoxalin-2-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (14.6 mg, 61.8% yield).
    • Example 1 g (2R,6S,13aS,14aR,16aS)-6-(tert-butoxycarbonylamino)-2,12-difluoro-5,16-dioxo-2-(quinoxalin-2-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid
  • Figure US20150119319A1-20150430-C00024
  • To a solution of (2R,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-12,12-difluoro-5,16-dioxo-2-(quinoxalin-2-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (Example 1 h, 14.6 mg, 0.022 mmol) in tetrahydrofuran (55.3 μl), ethanol (27.6 μl) and Water (27.6 μl) was added lithium hydroxide monohydrate (4.19 mg, 0.100 mmol). The reaction mixture was stirred at room temperature overnight, diluted with ethyl acetate and cooled to 0° C. The reaction mixture was neutralized with HCl (4 N in dioxane, 25 μl; diluted with ethyl acetate), stirred at room temperature and dried over anhydrous sodium sulfate. The mixture was filtered and evaporated under reduced pressure and the residue was purified by prep-TLC (elute with dichloromethane/methanol=5/1) to provide the title compound (2R,6S,13aS,14aR,16aS)-6-(tert-butoxycarbonylamino)-12,12-difluoro-5,16-dioxo-2-(quinoxalin-2-yloxy)octadecahydrocycloproparelpyrrolo[1,2-a][1,4]diazacyclopentadeeine-14a-carboxylic acid (I 1.04 mg, 0.017 mmol, 79% yield).
    • Example 1 tert-butyl (2R,6S,13aS,14aR,16aS)-14a-(cyclopropylsulffinylearbamoyl)-12,12-difluoro-5,16-dioxo-2-(quinoxalin-2-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate.
  • Figure US20150119319A1-20150430-C00025
  • To a solution of (2R,6S,13aS,14aR,16aS)-6-(tert-butoxycarbonylamino)-12,12-difluoro-5,16-dioxo-2-(quinoxalin-2-yloxy)octadeeahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopenta decine-14a-carboxylic acid (Example 1 g, 11.0 mg, 0.017 mmol) in dichloroethane (175 μl) was added molecular sieves (3 Å) and carbonyl diimidazole (4.65 mg, 0.029 mmol). The reaction mixture was stirred at 40° C. for 1.5 hr and cooled to room temperature. Cyclopropanesulfonamide (4.24 mg, 0.035 mmol) was added followed by DBU (5.5 μl, 0.036 mmol). The mixture was stirred at room temperature for 2 hr, diluted with dichloromethane, cooled to 0° C., and neutralized with HCl (23.5 μl of 4 N in dioxane and diluted with ethyl acetate). The mixture was filtered to remove sieves and the filtrate was concentrated under reduced pressure. The residue was purified by prep-TLC (dichloromethane/methanol=20/1) to give a white solid (12 mg, 100% yield). This material was repurified by prep-TLC (dichloromethane/ethyl acetate/methanol=1/1/0.02) to provide the title compound tert-butyl (2R,6S,13 aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxo-2-(quinoxalin-2-yloxy)octadecahydmcyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate (10.3 mg, 0.014 mmol, 80% yield) MS (ESI): m/z=735.4 [M+H]. Example 1 provided an IC50 of >1.0 nM in a 1a enzyme assay; an IC of >1.0 nM in a 1b enzyme assay; and a HLM stability value of between 50-100 μl/min/mg.
    • Example 2 N-((2R,6S,13aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxo-2-(quinoxalin-2-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl)-5-methylisoxazole-3-carboxamide.
  • Figure US20150119319A1-20150430-C00026
    • Example 2a (2R,6S,13 aS,14aR,16aS)-6-amino-N-(cyclopropylsulfonyl)-12,12-difluoro-5,16-dioxo-2-(quinoxalin-2-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopenta decine-14a-carboxamide
  • Figure US20150119319A1-20150430-C00027
  • To tert-butyl (2R,6S,13aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxo-2-(quinoxalin-2-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate (Example 1, 8.81 mg, 0.012 mmol) was added ethyl acetate (60 μl) followed by HCl (4 N in dioxane, 60 μl, 0.240 mmol). The solution was stirred at room temperature for 4 hr (a solid appeared), and LC/MS showed completion. The reaction mixture was concentrated to give the title compound (2R,6S,13aS,14aR,16aS)-6-amino-N-(cyclopropylsulfonyl)-12,12-difluoro-5,16-dioxo-2-(quinoxalin-2-yloxy)octadecahydrocyclo propa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide, hydrochloric acid (8.05 mg, quantitative yield).
    • Example 2 N-((2R,6S,13a S,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxo-2-(quinoxalin-2-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl)-5-methylisoxazole-3-carboxamide
  • Figure US20150119319A1-20150430-C00028
  • To a solution of (2R,6S,13aS,14aR,16aS)-6-amino-N-(cyclopropylsulfonyl)-12,2-difluoro-5,16-dioxo-2-(quinoxalin-2-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide, Hydrochloric Acid (Example 2a, 8.05 mg, 0.012 mmol) in DMF (120 μl) was added pyridine (7 μl, 0.087 mmol) followed by 5-methylisoxazole-3-carboxylic acid (2.28 mg, 0.018 mmol) and then HATU (7.04 mg, 0.019 mmol). The reaction mixture was stirred at room temperature overnight, diluted with ethyl acetate, cooled to 0° C. and neutralized with HCl (4 N in dioxane, 22 μl; diluted with ethyl acetate). The mixture was concentrated and purified by prep-TLC (ethyl acetate) to provide the title compound N-((2R,6S,13aS,14aR,16aS)-14a-(cyclopropyisulfonylcarbamoyl)-12,12-difluoro-5,16-dioxo-2-(quinoxalin-2-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl)-5-methylisoxazole-3-carboxamide (7.65 mg, 10.29 μmol, 86% yield) MS (ESI): m/z=744.3 [M+H].
  • Example 2 provided an IC50 of >1.0 nM in a 1a enzyme assay; an IC50 of >1.0 nM in a 1b enzyme assay; a HLM stability value of <50 μl/min/mg; an EC50 of >5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC50 of >5.0 nM in a replicon cell line assay in a 1b con1 background.
    • Example 3 Tert-butyl (2R,6S,13aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-2-(3-methylquinoxalin-2-yloxy)-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate.
  • Figure US20150119319A1-20150430-C00029
    • Example 3a (2R,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-12,12-difluoro-2-(3-methylquinoxalin-2-yloxy)-5,16-dioxooctadecahydroeyelopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • Figure US20150119319A1-20150430-C00030
  • Example 3a was prepared according to the procedure utilized for the preparation of Example if, replacing 2-quinoxalinol with 3-methyl-2-quinoxalinol.
    • Example 3b (2R,6S,13aS,14aR,16aS)-6-(tert-butoxycarbonylamino)-12,12-difluoro-2-(3-methylquinoxalin-2-yloxy)-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid.
  • Figure US20150119319A1-20150430-C00031
  • Example 3b was prepared according to the procedure utilized for the preparation of Example 1 g, replacing the product of Example 1 f with the product of Example 3a.
    • Example 3 tert-butyl (2R,6S,13 aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-2-(3-methylquinoxalin-2-yloxy)-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate
  • Figure US20150119319A1-20150430-C00032
  • Example 3 was prepared according to the procedure utilized for the preparation of Example 1, replacing the product of Example 1 g with the product of Example 3b. MS (ESI): m/z=749.3 [M+H].
  • Example 3 provided an IC50 of between 0.1 and 0.5 nM in a 1a enzyme assay; and an IC50 of between 0.1 and 0.5 nM in a 1b enzyme assay.
    • Example 4 N-((2R,6S,13aS,14aR, I 6aS)-14a-(cyclopmpylsulfonylcarbamoyl)-12,12-difluoro-2-(3 methylquinoxalin-2-yloxy)-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadeein-6-yl)-5-methylisoxazole-3-carboxamide
  • Figure US20150119319A1-20150430-C00033
    • Example 4a (2R,6S,13aS,14aR,16aS)-6-amino-N-(cyclopropylsulfonyl)-12,12-difluoro-2-(3-methylquinoxalin-2-yloxy)-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide hydrochloride
  • Figure US20150119319A1-20150430-C00034
  • Example 4a was prepared according to the procedure utilized for the preparation of Example 2a, replacing the product of Example 1 with the product of Example 3.
    • Example 4 N-((2R,6S,13aS,14aR,166)-14a-(cyclopropylsultbnylcarbamoyl)-12,12-difluoro-2-(3-methylquinoxalin-2-yloxy)-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl)-5-methylisoxazole-3-carboxamide
  • Figure US20150119319A1-20150430-C00035
  • Example 4 was prepared according to the procedure utilized for the preparation of Example 2, replacing the product of Example 2a with the product of Example 4a. MS (ESD: m/z=758.3 [M+H].
  • Example 4 provided an IC50 of between 0.1 and 0.5 nM in a 1a enzyme assay; an IC50 of between 0.5 and 1.0 nM in a 1b enzyme assay; a FILM stability value of <50 μl/min/mg; an EC50 of >5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC50 of between 1.0 and 2.0 nM in a replicon cell line assay in a 1 b-con1 background.
    • Example 5 tert-butyl (2R,6S,13aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-12,1-difluoro-5,16-dioxo-2-(3-phenylquinoxalin-2-ylox y)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate
  • Figure US20150119319A1-20150430-C00036
    • Example 5a (2R,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-12,12-difluoro-5,16-dioxo-2-(3-phenylquinoxalin-2-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • Figure US20150119319A1-20150430-C00037
  • Example 5a was prepared according to the procedure utilized for the preparation of Example if, replacing 2-quinoxalinol with 3-phenyl-2-quinoxalinol.
    • Example 5b (2R,6S,13aS,14aR,16aS)-6-(tert-butoxycarbonylamino)-12,12-difluoro-5,16-dioxo-2-(3-phenylquinoxalin-2-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid
  • Figure US20150119319A1-20150430-C00038
  • Example 5b was prepared according to the procedure utilized for the preparation of Example 1 g, replacing the product of Example if with the product of Example 5a.
    • Example 5 tert-butyl (2R,6S,13aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxo-2-(3-phenylquinoxalin-2-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate
  • Figure US20150119319A1-20150430-C00039
  • Example 5 provided an IC50 of between 0.5 and 1.0 MV in a 1a enzyme assay; and an IC50 of between 0.5 and 1.0 nM in a 1b enzyme assay.
    • Example 6 N-((2R,6S,13aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxo-2-(3-phenylquinoxalin-2-yloxy)octadecahydrocyclopropa[c]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl)-5-methylisoxazole-3-carboxamide
  • Figure US20150119319A1-20150430-C00040
    • Example 6a (2R,6S,13aS,14aR,16aS)-6-amino-N-(cyclopropylsulfonyl)-12,12-difluoro-5,16-dioxo-2-(3-phenylquinoxalin-2-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide
  • Figure US20150119319A1-20150430-C00041
  • Example 6a was prepared according to the procedure utilized for the preparation of Example 2a, replacing the product of Example 1 with the product of Example 5.
    • Example 6 N-((2R,6S,13aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxo-2-(3-phenylquinoxalin-2-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl)-5-methylisoxazole-3-carboxamide
  • Figure US20150119319A1-20150430-C00042
  • Example 6 was prepared according to the procedure utilized for the preparation of Example 2, replacing the product of Example 2a with the product of Example 6a, MS (ESI): m/z=820.3 [M+H].
  • Example 6 provided an IC50 of <0.1 nM in a 1a enzyme assay; an IC50 of between 0.1 and 0.5 nM in a 1b enzyme assay; a HLM stability value of <50 μl/min/mg; an EC50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC50 of between 1.0 and 2.0 nM in a replicon cell line assay in a 1b-con1 background.
    • Example 7 tert-butyl (2R,6S,13aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-2-(3-ethylquinoxain-2-yloxy)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate.
  • Figure US20150119319A1-20150430-C00043
    • Example 7a (1R,2S)-ethyl 1-(bis(tert-butoxycarbonyl)amino)-2-(2-hydroxyethyl)cyclopropane carboxylate
  • Figure US20150119319A1-20150430-C00044
  • To (1R,2S)-ethyl 1-(tert-butoxycarbonylamino)-2-vinylcyclopropanecarboxylate (10 g, 39.2 mmol) and Boc anhydride (22.73 mL, 98 mmol) dissolved in tetrahydrofuran (25 mL) at room temperature was added portionwise DMAP (3.83 g, 31.3 mmol) and the mixture was stirred for 3 h. The mixture was quenched with water and extracted with ethyl acetate. The organic layer was washed with 0.1 N HCl followed by saturated aqueous sodium chloride solution, separated, dried over anhydrous magnesium sulfate, filtered, and evaporated under reduced pressure. The residual oil was purified by flash chromatography on silica gel eluting with a 5-15% ethyl acetate/hexane gradient to provide (1R,2S)-ethyl 1-(bis(tert-butoxycarbonyl)amino)-2-vinylcyclopropanecarboxylate (13.2 g, 37.1 mmol, 95% yield) as a clear oil. MS (ESI): m/z=378.0 [M+Na].
  • To a solution of (1R,2S)-ethyl 1-(bis(tert-butoxycarbonyl)amino)-2-vinylcyclopropane carboxylate (13.2 g, 37.1 mmol) in tetrahydrofuran (50 mL) at −15° C. was added dropwise 1 N borane tetrahydrofuran complex (74.3 mL, 74.3 mmol) and the mixture was stirred for 2 h at −15° C. To the resulting mixture stirring at 0° C. was added dropwise water (100 mL) followed by sodium perborate tetrahydrate (11.43 g, 74.3 mmol), and the mixture was stirred for 16 hr at rt. The reaction mixture was diluted with ethyl acetate and water, and the resulting organic layer was washed with saturated aqueous sodium chloride solution, separated, dried over anhydrous magnesium sulfate, filtered, and the solvent evaporated under reduced pressure. The residue was purified via flash chromatography on silica gel (10-20% acetone/hex). The resulting impure material was repurified by flash chromatography on silica gel (eluting with a 25%-50% ethyl acetate/hexane gradient) to give (1R,2S)-ethyl 1-(bis(tert-butoxycarbonyl)amino)-2-(2-hydroxyethyl)cyclopropanecarboxylate (9.15 g, 24.50 mmol, 66.0% yield) as an oil. MS (ESI): m/z=396.0 [M+Na].
    • Example 7b (1R,2S)-ethyl 1-(bis(tert-butoxycarbonyl)amino)-2-(2-hydroxyhex-5-enyl)cyclopropanecarboxylate
  • Figure US20150119319A1-20150430-C00045
  • To a solution of (1R,2S)-ethyl 1-(bis(tert-butoxycarbonyl)amino)-2-(2-hydroxyethyl)cyclopropanecarboxylate (8.65 g, 23.2 mmol) in dichloromethane (116 ml) at 25° C. was added Doss-Martin Periodinane (13.8 g, 32.4 mmol). The mixture was stirred for 3 h and quenched with 1 N sodium thiosulfate (70 mL) and aqueous saturated sodium bicarbonate solution (30 mL), and stirred for 1 h. The organic layer was separated, dried over anhydrous sodium sulfate, filtered, and evaporated under reduced pressure. This material was purified by flash chromatography on silica gel (eluted with 25% ethyl acetate/hexane) to yield (1R,2S)-ethyl 1-(bis(tert-butoxycarbonyDamino)-2-(2-oxoethyl)cyclopropanecarboxylate (7.05 g, 82% yield) as an oil. MS (ESI): m/z=394.1 [M+Na].
  • To (1R,2S)-ethyl 1-(bis(tert-butoxycarbonyl)amino)-2-(2-oxoethyl)cyclopropanecarboxylate (7.05 g, 19.0 mmol) in tetrahydrofuran (60 mL) at −78° C. was added but-3-enylmagnesium bromide (45.6 mL, 22.78 mmol) and the reaction mixture was stirred for 30 min. The mixture was then quenched with saturated aqueous ammonium chloride and extracted with ethyl acetate. The organic layer was separated, dried over anhydrous magnesium sulfate, filtered, and evaporated under reduced pressure. The residual oil was purified via flash chromatography on silica gel (25% hexane/ethyl acetate) to provide the title compound (2.75 g, 34%) as an oil, along with recovered starting material (2.89 g, 41%). MS (ESI): m/z=450.1 [M+Na].
    • Example 7c (1R,2S)-ethyl 1-(bis(tert-butoxycarbonyl)amino)-2-(2-oxohex-5-enyl)cyclopropane carboxylate
  • Figure US20150119319A1-20150430-C00046
  • To a solution of (1R,2S)-ethyl 1-(bis(tert-butoxycarbonyl)amino)-2-(2-hydroxyhex-5-enyl)cyclopropanecarboxylate (4.3 g, 10 mmol) in dichloromethane (50 ml) at 25° C. was added Dess-Martin Periodinane (5.97 g, 14.1 mmol). The reaction mixture was stirred for 3 h and quenched with 1 N aqueous sodium thiosulfate solution (50 mL) and saturated aqueous sodium bicarbonate solution (15 mL), and the reaction mixture stirred for 1 h. The organic layer was separated, dried over anhydrous sodium sulfate, filtered, and evaporated under reduced. The crude product was purified by flash chromatography on silica gel (15% ethyl acetate/hexane) to provide (1R,2S)-ethyl 1-(bis(tert-butoxycarbonyl)amino)-2-(2-oxohex-5-enyl)cyclopropane carboxylate (3.8 g, 88% yield) as an oil. MS (ESI): na/z=448.1 [M+Na]
    • Example 7d (1R,2S)-ethyl 1-(bis(tert-butoxycarbonyl)amino)-2-(2,2-difluorohex-5-enyl)cyclo propanecarboxylate
  • Figure US20150119319A1-20150430-C00047
  • A solution of (1R,2S)-ethyl 1-(bis(tert-butoxycarbonyl)amino)-2-(2-oxohex-5-enyl)cyclopropanecarboxylate (338 g, 8.88 mmol) in DAST (5.87 ml, 44.4 mmol) was stirred at room temperature for 3 days The reaction mixture was cooled to −78° C., diluted with 50 mL dichloromethane and added in a stream to a 0° C. solution of saturated aqueous sodium bicarbonate solution (200 mL). The reaction mixture was stirred for 30 min and the organic layer was separated, dried over anhydrous sodium sulfate, filtered, and evaporated under reduced pressure. The crude material was purified by flash chromatography on silica gel (10-15% ethyl acetate/hexane gradient) to provide the title compound (1.95 g, 49%) as an oil. MS (ESI): m/z=470.1 [M+Na].
    • Example 7e (1R,2S)-ethyl 1-amino-2-(2,2-difluorohex-5-enyl)cyclopropanecarboxylate hydrochloride
  • Figure US20150119319A1-20150430-C00048
  • A solution of (1R,2S)-ethyl 1-(bis(tert-butoxycarbonyl)amino)-2-(2,2-difluorohex-5-enyl)cyclopropanecarboxylate (2.45 g, 5.47 mmol) in 1,4-dioxane (6 mL) and 4 N HCl (11.6 mL, 46.5 mmol) was stirred at room temperature for 3 h. The mixture was evaporated and eluted through a silica gel (50 mL) column with 4-10% methanol/dichloromethane to give (1R,2S)-ethyl 1-amino-2-(2,2-difluorohex-5-enyl)cyclopropanecarboxylate, hydrochloric acid salt (1.4 g, 4.93 mmol, 90% yield) as a yellow oil. MS (ESI): m/z 247.9 [M+H].
    • Example 7f (2S,4R)-1-((S)-2-(tert-butoxycarbonylamino)pent-4-enoyl)-4-hydroxy-pyrrolidine-2-carboxylic acid
  • Figure US20150119319A1-20150430-C00049
  • A mixture of (S)-2-(tert-butoxycarbonylamino)pent-4-enoic acid (3.0 g, 13.9 mmol), and 2-(3H-[1,2,3]triazolo[4,5-b]pyridin-3-yl)-1,1,3,3-tetramethylisouronium hexafluorophosphate(V) (5.83 g, 15.3 mmol) in DMF (15 ml) was stirred for 5 mm at room temperature. To this mixture was added (2S,4R)-methyl 4-hydroxypyrrolidine-2-carboxylate, hydrochloric acid salt (2.78 g, 15.33 mmol) followed by the dropwise addition of N-ethyl-N-isopropylpropan-2-amine (8.52 ml, 48.8 mmol), and the reaction mixture was stirred 16 h at room temperature. The mixture was diluted with ethyl acetate, washed with 1 N aqueous sodium bicarbonate solution followed by 0.1 N HCl, and the organic layer was separated, dried over anhydrous magnesium sulfate, filtered, and evaporated under reduced pressure. The oily residue after was purified by flash chromatography on silica gel (4% methanol/dichloromethane) to provide the title compound as an oil (2S,4R)-methyl 1-((S)-2-(tert-butoxycarbonylamino)pent-4-enoyl)-4-hydroxypyrrolidine-2-carbo xylate (3.0 g, 8.76 mmol, 62.9% yield). MS (ESI): m/z=342.9 [M+H].
  • To a solution of (2S,4R)-methyl 1-((S)-2-(tert-butoxycarbonylamino)pent-4-enoyl)-4-hydroxypyrrolidine-2-carboxylate (3.0 g, 8.76 mmol) in tetrahydrofuran (29.2 ml), water (14.6 ml), and ethanol (14.6 ml) stirring at room temperature was added lithium hydroxide monohydrate (2.39 g, 57.0 mmol). The mixture was stirred for 16 h, the organic solvent was evaporated under reduced pressure, and the aqueous layer was extracted once with dichloromethane. The aqueous layer was cooled in an ice bath, acidified with 68 mL of 1N HCl, saturated with sodium chloride, and extracted with ethyl acetate. The organic layer was dried (anhydrous sodium sulfate), filtered, and evaporated to a provide the title compound as a white foam (2.83 g, 8.62 mmol, 98% yield. MS (EST): m/z=329.0 [M+1-1].
    • Example 7 g (1R,2S)-ethyl 1-((2S,4R)-1-4S)-2-(tert-butoxycarbonylamino)pent-4-enol)-4-hydroxypyrrolidine-2-carboxamido)-2-(2,2-difluorohex-5-enyl)cyclopropanecarboxylate
  • Figure US20150119319A1-20150430-C00050
  • To a mixture of (2S,4R)-1-((S)-2-(tert-butoxycarbonylamino)pent-4-enoyl)-4-hydroxypyrrolidine-2-carboxylic acid (1.78 g, 5.43 mmol), (1R,2S)-ethyl 1-amino-2-(2,2-difluorohex-5-enyl)cyclopropanecarboxylate (1.4 g, 4.9 mmol) and 2-(3H-[1,2,3]triazolo[4,5-b]pyridin-3-yl)-1,1,3,3-tetramethylisouronium hexafluorophosphate(V) (2.06 g, 5.43 mmol) in dichloromethane (22 mL) was added N-ethyl-N-isopropylpropan-2-amine (3.02 mL, 17.3 mmol), and the mixture was stirred 3 h at room temperature. The reaction mixture was washed with 1 N aqueous sodium bicarbonate solution followed by 1 N HCl and organic layer was separated, dried over anhydrous sodium sulfate, filtered and evaporated under reduced pressure. The residue was purified by flash chromatography on silica gel (5% methanol/dichloromethane). Fractions containing the title compound were evaporated to a yellow oil and repurified by flash chromatogaphy on silica gel (40% acetone/hexane) to give provide the title compound (1R,2S)-ethyl 1-((2S,4R)-1-((S)-2-(tert-butoxycarbonylamino)pent-4-enoyl)-4-hydroxypyrrolidine-2-carboxamido)-2-(2,2-difluorohex-5-enyl)cyclopropanecarboxylate (2.31 g, 84% yield) as a foam. MS (ESI): m/z=558.3 [M+1-1].
    • Example 7 h (2R,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-12,12-difluoro-2-hydroxy-5,16-dioxo-1,2,3,5,6,7,10,11,12,13,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • Figure US20150119319A1-20150430-C00051
  • To a solution of (1R,2S)-ethyl 1-((2S,4R)-1-((S)-2-(tert-butoxycarbonylamino)pent-4-enoyl)-4-hydroxypyrrolidine-2-carboxamido)-2-(2,2-difluorohex-5-enyl)cyclopropanecarboxylate (1.95 g, 3.50 mmol) in dichloroethane (583 ml) which was degassed by bubbling with nitrogen for 45 min was added Grubb 11 catalyst (66 mg, 0.03 eq). The solution was heated at 60° C. for 2 h. Another aliquot of catalyst was added (22 mg, 0.01 eq) and the reaction mixture was heated for an additional 1.5 h. Another aliquot of catalyst (11 mg, 0.005 eq) was added and the reaction mixture was heated for an additional 1 h. The reaction mixture was quenched by the addition of 2-mercaptonicotinic acid (390 mg, 0.74 eq) and stirred at 60° C. for 45 m. The reaction mixture was cooled to 0° C. and 140 mL saturated sodium bicarbonate solution and 280 mL of water was added, and the reaction mixture was stirred for 45 min. The organic layer was separated, dried over anhydrous magnesium sulfate, filtered, and evaporated under reduced pressure. The resulting residue was purified by flash chromatography on silica gel (5% methanol/dichloromethane) to provide (2R,6S,13aS,14aR,16aS,E)-ethyl 6-(tert-butoxycarbonylamino)-12,12-difluoro-2-hydroxy-5,16-dioxo-1,2,3,5,6,7,10,11,12,13,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (0.94 g, 1.775 mmol, 50.8% yield) as a white solid. MS (ESI): m/z=530.2 [M+14].
    • Example 7i (2R,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-12,12-difluoro-2-hydroxy-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • Figure US20150119319A1-20150430-C00052
  • A solution of (2R,6S,13aS,14aR,16aS,E)-ethyl 6-(tert-butoxycarbonylamino)-12,12-difluoro-2-hydroxy-5,16-dioxo-1,2,3,5,6,7,10,11,12,13,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (Example 7 h, 1.06 g, 2.002 mmol) in ethyl acetate (50 ml) at 25° C. was added 10% palladium/carbon (0.170 g, 0.160 mmol). The reaction mixture was stirred under a balloon of hydrogen for 2 days. The reaction mixture was filtered through a small plug of silica gel and eluted with ethyl acetate then methanol. The solvent was evaporated under reduced pressure and the resulting solid was purified by flash chromatography on silica gel (40% ethyl acetate/dichloromethane, then ethyl acetate) to provide (2R,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-12,12-difluoro-2-hydroxy-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (1.01 g, 1.900 mmol, 95% yield) as a white solid. MS (ESI): m/z=532.3 [M+H].
    • Example 7j (2R,6S,13aS,14aR,16aS)-6-(tert-butoxycarbonylamino)-12,12-difluoro-2-hydroxy-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid
  • Figure US20150119319A1-20150430-C00053
  • To (2R,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonyl amino)-12,12-difluoro-2-hydroxy-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (Example 7i, 900 mg, 1.693 mmol) was added tetrahydrofuran (5.6 ml), methanol (2.80 ml) and water (2.80 ml). Lithium hydroxide monohydrate (145.44 mg, 3.47 mmol) was added at room temperature, and the reaction mixture was stirred at 40° C. for 16 h. The reaction mixture was diluted with CH3CN and neutralized with HCl (2 N, 1.7 ml). The mixture was concentrated under reduced pressure and azeotroped with chloroform followed by ethyl acetate and dried overnight at reduced pressure to provide the title compound (850 mg, quantitative yield). This material was utilized in subsequent reactions without additional purification.
    • Example 7k (2R,6S,13aS,14aR,16aS)-6-(tert-butoxycarbonylamino)-2-(3-ethylquinoxalin-2-yloxy)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid
  • Figure US20150119319A1-20150430-C00054
  • To (2R,6S,13aS,14aR,166)-6-(tert-butoxycarbonylamino)-12,12-difluoro-2-hydroxy-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid (Example 7j, 87.4 mg, 0.174 mmol) was added 2-chloro-3-ethylquinoxaline (47.7 mg, 0.247 mmol) and DMF (868 μl). To this solution was added sodium tert-pentoxide (48.9 mg, 0.444 mmol) at room temperature, and the mixture turned dark purple (slightly exothermic). The reaction mixture was stirred at room temperature for 17 h. Additional 2-chloro-3-ethylquinoxaline (18.1 mg, 0.094 mmol) and sodium tert-pentoxide (24.2 mg, 0.202 mmol) were added, and the reaction mixture was stirred for 22 h. The reaction mixture was diluted with CU3CN and neutralized with HCl (1 N, 0.7 ml) and evaporated under reduced pressure. The residue was purified by reverse phase HPLC (CH3CN/H2O (0.1% TFA), gradient=20/80-85/15) to provide the title compound as a light brown solid, (2R,6S,13aS,14aR,16aS)-6-(tert-butoxycarbonylamino)-2-(3-ethylquinoxalin-2-yloxy)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,4]diazacyclopentadecine-14a-carboxylic acid (66 mg, 57% yield).
    • Example 7 tert-butyl (2R,6S,13 aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-2-(3-ethylquinoxalin-2-yloxy)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate
  • Figure US20150119319A1-20150430-C00055
  • Figure US20150119319A1-20150430-C00056
  • To (2R,6S,13aS,14aR,16aS)-6-(tert-butoxycarbonylamino)-2-(3-ethylquinoxalin-2-yloxy)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid (Example 7k, 26.2 mg, 0.040 mmol) was added sieves (4 A) and dichloroethane (397 μl). To this mixture was added carbonyldiimidazole (13.5 mg, 0.083 mmol), and the reaction mixture was stirred at 40° C. for 2 hr. The reaction mixture was then cooled to room temperature and cyclopropanesulfonamide (12.4 mg, 0.103 mmol) was added followed by DBU (15 μl, 0.100 mmol). The reaction mixture was stirred at room temperature for 16 h, diluted with dichloromethane and cooled to 0° C. This mixture was neutralized with HCl (4 N in dioxane, 67 μl), and the mixture was filtered to remove sieves. The eluant was concentrated under reduced pressure and the residue was purified by reverse phase HPLC (CH3CN/H2O (0.1% TFA) gradient=45/55-85/15) to provide tert-butyl (2R,6S,13aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-2-(3-ethylquinoxalin-2-yloxy)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate (25.8 mg, 85% yield) as a light yellow solid. MS (ESD: m/z=763.0 [M+H], 761.3 [M−H]. Example 7 provided an IC50 of between 0.5 and 1.0 nM in a 1a enzyme assay; an IC50 of between 0.1 and 0.5 nM in a 1b enzyme assay; a HLM stability value of >100 μl/min/mg; an EC50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC50 of between 1.0 and 2.0 nM in a replicon cell line assay in a 1b-con1 background.
    • Example 8 tert-butyl 2R,6S,13aS,14aR,16aS)-2-(3-ethylquinoxalin-2-yloxy)-12,12-difluoro-14a-(1-methylcyclopropylsulfonylcarbamoyl)-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate.
  • Figure US20150119319A1-20150430-C00057
  • Example 8 was prepared according to the procedure utilized for the preparation of Example 7 from Example 7k, replacing cyclopropanesulfonamide with 1-methylcyclopropane-1-sulfonamide. Yield=67%. MS (ESI): m/z=777.2 [M+H], 775.4 [M−H].
  • Example 8 provided an IC50 of between 0.1 to 0.5 nM in a 1a enzyme assay; an IC50 of between 0.1 to 0.5 nM in a 1b enzyme assay; a HLM stability value of >100 μl/min/mg; an EC50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC50 of between 1.0 and 2.0 nM in a replicon cell line assay in a 1b-con1 background.
    • Example 9 N-((2R,6S,13aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-2-(3-ethylquinoxalin-2-yloxy)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl)-5-methylisoxazole-3-carboxamide
  • Figure US20150119319A1-20150430-C00058
    • Example 9a (2R,6S,13aS,14aR,16aS)-6-amino-N-(cyclopropylsulfonyl)-2-(3-ethylquinoxalin-2-yloxy)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide hydrochloride
  • Figure US20150119319A1-20150430-C00059
  • Example 9a was prepared according to the procedure utilized for the preparation of Example 2a, replacing the product of Example 1 with the product of Example 7.
    • Example 9 N-((2R,6S,13aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-2-(3-ethylquinoxalin-2-yloxy)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl)-5-methylisoxazole-3-carboxamide
  • Figure US20150119319A1-20150430-C00060
  • Example 9 was prepared according to the procedure utilized for the preparation of Example 2, replacing the product of Example 2a with the product of Example 9a. Yield=74%. MS (ESI): m/z=772.3 [M+H], 770.4 [M−H].
  • Example 9 provided an IC50 of between 0.5 and 1.0 nM in a 1a enzyme assay; an IC50 of between 0.1 and 0.5 nM in a 1b enzyme assay; a FILM stability value of <50 μl/min/mg; an EC50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC50 of between 1.0 and 2.0 nM in a replicon cell line assay in a 1b-con1 background.
    • Example 10 N-((2R,6S,13aS,14aR,16aS)-2-(3-ethylquinoxalin-2-yloxy)-12,12-difluoro-14a-(1-methylcyclopropylsulfonylcarbamoyl)-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl)-5-methylisoxazole-3-carboxamide
  • Figure US20150119319A1-20150430-C00061
    • Example 10a (2R,6S,13aS,14aR,16aS)-6-amino-2-(3-ethylquinoxalin-2-yloxy)-12,12-difluoro-N-(1-methylcycloprop ylsulfonyl)-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide hydrochloride
  • Figure US20150119319A1-20150430-C00062
  • Example 10a was prepared according to the procedure utilized for the preparation of Example 2a, replacing the product of Example 1 with the product of Example 8.
    • Example 10 N-((2R,6S,13 aS,14aR,16aS)-2-(3-ethylquinoxalin-2-yloxy)-12,12-difluoro-14a-(1-methylcyclopropylsulfonylcarbamoyl)-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl)-5-methylisoxazole-3-carboxamide
  • Figure US20150119319A1-20150430-C00063
  • Example 10 was prepared according to the procedure utilized for the preparation of Example 2, replacing the product of Example 2a with the product of Example 10a. Yield=83%. MS (ESI): m/z=786.3 [M±H], 784.3 [M−H].
  • Example 10 provided a HLM stability value of <50 μl/min/mg; an EC50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC50 of between 1.0 and 2.0 nM in a replicon cell line assay in a 1b-con1 background.
    • Example 11 N-((2R,6S,13aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-2-(3-ethylquinoxalin-2-yloxy)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl)isoxazole-3-carboxamide
  • Figure US20150119319A1-20150430-C00064
  • Example 11 was prepared according to the procedure utilized for the preparation of Example 9, replacing 5-methylisoxazole-3-carboxylic acid with isoxazole-3-carboxylic acid. Yield=74%. MS (ESI): m/z=758.6 [M+H], 756.4 [M−H].
  • Example 11 provided an IC50 of between 0.1 and 0.5 nM in a 1a enzyme assay; an IC50 of between 0.1 and 0.5 nM in a 1b enzyme assay; a FILM stability value of <50 μl/min/mg; an EC50 of >5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1b-con1 background.
    • Example 12 (2R,6S,13aS,14aR,16aS)—N-(cyclopropylsulfonyl)-2-(3-ethylquinoxalin-2-yloxy)-12,12-difluoro-5,16-dioxo-6-pivalamidooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide
  • Figure US20150119319A1-20150430-C00065
  • Example 12 was prepared according to the procedure utilized for the preparation of Example 9, replacing 5-methylisoxazole-3-carboxylic acid with pivalic acid. Yield=85%. MS (ESI): m/z=747.3 [M+H], 745.4 [M−H].
  • Example 12 provided an IC50 of between 0.5 and 1.0 nM in a 1a enzyme assay; an IC50 of between 0.5 and 1.0 nM in a 1b enzyme assay; a HLM stability value of <50 μl/min/mg; an EC50 of >5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC50 of >5.0 nM in a replicon cell line assay in a 1b-con1 background.
    • Example 13 tert-butyl (2R,6S,13aS,14aR,16aS)-2-(3-(benzo[d]thiazol-2-yl)quinoxalin-2-yloxy)-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][2,4]diazacyclopentadecin-6-ylcarbamate
  • Figure US20150119319A1-20150430-C00066
    • Example 13a Ethyl 2-(benzo[d]thiazol-2-yl-2-oxoacetate
  • Figure US20150119319A1-20150430-C00067
  • To a solution of ethyl oxalyl ride (0.537 ml, 4.82 mmol) in dichloromethane (2.411 ml) was added slowly a solution of 2-(trimethylsilyl)benzothiazole (0.945 ml, 4.82 mmol) in dichloromethane (2.4 ml) stirring at 0° C. The reaction mixture was stirred at 0° C. for 30 min allowed to warm slowly to room temperature with stirring over 16 h. The reaction mixture was evaporated under reduced pressure and purified by flash chromatography on silica gel (hex/EA/dichloromethane=8/1/1) to provide the title compound (ethyl 2-(benzo[d]thiazol-2-yl)-2-oxoacetate, 116.2 mg, 10° A yield) as an oil.
    • Example 13b 3-(benzo[d]thiazol-2-yl)quinoxalin-2-ol
  • Figure US20150119319A1-20150430-C00068
  • To a solution of ethyl 2-(benzo[d]thiazol-2-yl)-2-oxoacetate (Example 13a, 655 mg, 2.78 mmol) in EtOH (5.6 mL) was added o-phenylenediamine (300 mg, 2.78 mmol). The reaction mixture was heated with stirring at 90° C. for 1 hr (a yellow/green solid appeared quickly), cooled to 0° C., and the solid filtered and rinsed with cold EtOFI. The solid was dried under vacuum overnight to provide the title compound (3-(benzo[d]thiazol-2-yl)quinoxalin-2-ol, 313 mg, 40% yield) as a yellow green solid.
    • Example 13c 2-(3-chloroquinoxalin-2-benzo[d]thiazole
  • Figure US20150119319A1-20150430-C00069
  • To a suspension of 3-(benzo[d]thiazol-2-yl)quinoxalin-2-ol (251 mg, 0.900=op in toluene (4500 μl) was added thionyl chloride (131 μl, 1.800 mmol) followed by DMF (69.7 μl, 0.900 mmol). The green mixture was stirred at 110° C. for 3 hr. The reaction mixture was evaporated under reduced pressure and the resulting solid was diluted with CHCl3 (30-40 ml) and the insoluble solid filtered and rinsed with CHCl3. The filtrate was evaporated under reduced pressure and the residue purified by flash chromatography on silica gel (eluted with chloroform, then dichloromethane) to provide the title compound as a light yellow solid.
    • Example 13d (2R,6S,13aS,14aR,16aS)-2-(3-(benzo[d]thiazol-2-yl)quinoxalin-2-yloxy)-6-(tert-butoxycarbonylamino)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid
  • Figure US20150119319A1-20150430-C00070
  • To (2R,6S,13aS,14aR,16aS)-6-(tert-butoxyrcarbonylamino)-12,12-difluoro-2-hydroxy-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid (Example 13c, 13 mg, 0.026 mmol) was added DMF (129 μl). Sodium tert-pentoxide (6.28 mg, 0.057 mmol) was added in one portion at room temperature and the mixture was stirred at room temperature for 45 minutes. 2-(3-Chloroquinoxalin-2-yl)benzo[d]thiazole (9.13 mg, 0.031 mmol) was added at room temperature. The resulting yellow mixture was stirred at room temperature for 22 hr. The reaction mixture was diluted with CH3CN, neutralized with HCl. (2 N, 15 μl), and evaporated under reduced pressure. The solid was diluted with CH3CN/H2O (0.1% TFA)/DMSO and filtered to remove insoluble yellow solid. The filtrate was purified by reverse phase HPLC (C18, CH3CN/H2O (0.1% TFA) 30/70 to 100/0, 15 min) to provide the title compound (5.2 mg, 26% yield).
    • Example 13 tert-butyl (2R,6S,13 aS,14aR,16aS)-2-(3-(benzo[d]thiazol-2-yl)quinoxalin-2-yloxy)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate
  • Figure US20150119319A1-20150430-C00071
  • To a solution of (2R,6S,13aS,14aR,16aS)-2-(3-(benzo[d]thiazol-2-yl)quinoxalin-2-yloxy)-6-(tert-butoxycarbonylamino)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid (Example 13d, 6.22 mg, 8.13 μmol) was added molecular sieves and DCE (81 μl). CDI (2.91 mg, 0.018 mmol) was added, and the mixture was stirred at 40° C. for 2 h. The reaction mixture was cooled to rt and cyclopropanesulfonamide (2.4 mg, 0.020 mmol) was added followed by DBU (3 μl, 0.020 mmol). The mixture was stirred at rt for 2.5 h, diluted with dichloromethane and cooled to 0° C. The mixture was neutralized with HCl (14 μl, 4 N in dioxane, diluted with EA) and stirred for 5 min at 0° C., and evaporated under reduced pressure. The residue was purified by silica gel prep-TLC (dichloromethane/EA=1/1) to provide the title compound as a yellow solid, (5.2 mg, 74% yield). MS (ESI): m/z=868.3 [M+11], 866.3 [M−H].
    • Example 14 N-((2R,6S,13 aS,14aR,16aS)-2-(3-(benzo[d]thiazol-2-yl)quinoxalin-2-yloxy)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl)-5-methylisoxazole-3-carboxamide
  • Figure US20150119319A1-20150430-C00072
    • Example 14a (2R,6S,13aS,14aR,16aS)-6-amino-2-(3-(benzo[d]thiazol-2-yl)quinoxalin-2-yloxy)-N-(cyclopropylsulfonyl)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide hydrochloride
  • Figure US20150119319A1-20150430-C00073
  • To a solution of tert-butyl (2R,6S,13aS,14aR,16aS)-2-(3-(benzo[d]thiazol-2-yl)quinoxalin-2-yloxy)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxooctadecahydro cyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate (Example 13, 17.4 mg, 0.020 mmol) in ethyl acetate (100 μl) was added HCl (4 M in dioxane, 100 μl, 0.401 mmol) at rt. The mixture was stirred at rt for 16 h, and more HCl (100 μl, 0.401 mmol) was added, and the reaction mixture stirred for 6 hr. The reaction mixture was concentrated under reduced pressure and azeotroped with EA to provide the title compound as a yellow solid which was used without further purification.
    • Example 14 N-((2R,6S,13 aS,14aR,16aS)-2-(3-(benzo[d]thiazol-2-yl)quinoxalin-2-yloxy)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl)-5-methylisoxazole-3-carboxamide
  • Figure US20150119319A1-20150430-C00074
  • To (2R,6S,13aS,14aR,16aS)-6-amino-2-(3-(benzo[d]thiazol-2-yl)quinoxalin-2-yloxy)-N-(cyclopropylsulfonyl)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide, Hydrochloric Acid (Example 14a, 16.1 mg, 0.020 mmol) was added DMF (200 μl) and diisopropylethylamine (25 μl, 0.14 mmol). To the yellow solution was added 5-methylisoxazole-3-carboxylic acid (3.85 mg, 0.030 mmol) followed by HATU (13.89 mg, 0.037 mmol). The reaction mixture was stirred at rt 2 h, cooled to 0° C. and neutralized with HCl (4 N in dioxane, 36 μl, diluted with EA). The solution was concentrated under reduced pressure and purified by prep-TLC (dichloromethane/EA=1/1, 2×) to provide the title compound N-((2R,6S,13aS,14aR,16aS)-2-(3-(benzo[d]thiazol-2-yl)quinoxalin-2-yloxy)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl)-5-methylisoxazole-3-carboxamide (14.3 mg, 81% yield). MS (ESI): m/z=877.1 [M+11], 875.2 [M−H].
  • Example 14 provided an IC of between 0.1 and 0.5 nM in a 1a enzyme assay; an IC50 of between 0.1 and 0.5 nM in a 1b enzyme assay; a HLM stability value of <50 μl/min/mg; an EC50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC50 of between 1.0 and 2.0 nM in a replicon cell line assay in a 1b-con1 background.
    • Example 15 tert-butyl (2R,6S,13aS,14aR,16aS)-2-(3-(benzofuran-2-yl)quinoxalin-2-yloxy)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate
  • Figure US20150119319A1-20150430-C00075
    • Example 15a Ethyl 2-(benzatitran-2-yl)-2-oxoacetate
  • Figure US20150119319A1-20150430-C00076
  • To a solution of benzofuran (0.250 mL, 2.32 mmol) in tetrahydrofuran (12.5 mL) stirring at −100° C. (CO2, ether bath) was added n-BuLi (1.377 mL, 2.203 mmol, 1.6 M in hexanes). The reaction was stirred for 30 min (yellow color) and added dropwise via a canulated into a solution of diethyl oxalate (0.314 mL, 2.32 mmol) in tetrahydrofuran (7 mL) stirring at −100° C. The reaction mixture was stirred for 1 h and then quenched with saturated aqueous ammonium chloride solution. The mixture was warmed to rt, diluted with dichloromethane, and washed with 0.1 N HCl. The organic layer was separated, dried over anhydrous magnesium sulfate, filtered, and evaporated under reduced pressure. The residue was purified by flash chromatography on silica gel (eluted with dichloromethane). The fractions containing the title compound were collected and repurified by flash chromatography on silica gel (25% acetone/hexane) to provide the title compound (ethyl 2-(benzofuran-2-yl)-2-oxoacetate, 237 mg, 47% yield).
    • Example 15b 3-(benzofuran-2-yl)quinoxalin-2-ol
  • Figure US20150119319A1-20150430-C00077
  • To a solution of ethyl 2-(benzofuran-2-yl)-2-oxoacetate (Example 15a, 237 mg, 1.09 mmol) in EtOH (2.7 mL) was added o-phenylenediamine (117 mg, 1.09 mmol). The reaction mixture was stirred at 90° C. for 16 h (a yellow solid appeared quickly). The mixture was cooled to 0° C., filtered, and the solid rinsed with cold EtOH. The yellow solid was azeotroped with CHCl3 and benzene and dried to provide the title compound (268 mg, 94% yield).
    • Example 15c 2-(benzofuran-2-yl)-3-chloroquinoxaline
  • Figure US20150119319A1-20150430-C00078
  • To a suspension of 3-(benzofuran-2-yl)quinoxalin-2-ol (Example 15b, 268 mg, 1.02 mmol) in Toluene (5.1 mL) was added thionyl chloride (0.30 mL, 4.1 mmol) followed by DMF (238 μl, 3.07 mmol). The yellow reaction mixture was stirred at 110° C. for 2 h, cooled to room temperature, and evaporated under reduced pressure to gave a yellow solid. The solid was suspended in dichloromethane (20 ml) and purified by flash chromatography on silica gel (dichloromethane) to give the title compound, 2-(benzofuran-2-yl)-3-chloroquinoxaline (297 mg, quantitative yield), as a yellow solid.
    • Example 15d (2R,6S,13aS,14aR,16aS)-2-(3-(benzofuran-2-yl)quinoxalin-2-yloxy)-6-(tert-butoxycarbonylamino)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid
  • Figure US20150119319A1-20150430-C00079
  • The title compound was prepared according to the procedure utilized for the preparation of Example 13d, replacing the product of Example 13c with the product of Example 15c. Yield=66%.
    • Example 15 tert-butyl (2R,6S,13 aS,14aR,16aS)-2-(3-(benzofuran-2-yl)quinoxalin-2-yloxy)-14a-(cyclopropylsulthnylcarbamoyl)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate
  • Figure US20150119319A1-20150430-C00080
  • The title compound was prepared according to the procedure utilized for the preparation of Example 13, replacing the product of Example 13d with the product of Example 15d. (91% yield).
  • MS (ESI): m/z=803.6 [M+H].
    • Example 16 N-((2R,6S,13aS,14aR,16aS)-2-(3-(benzofuran-2-yl)quinoxalin-2-yloxy)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl)-5-methylisoxazole-3-carboxamide
  • Figure US20150119319A1-20150430-C00081
    • Example 16a (2R,6S,13414aR,16aS)-6-amino-2-(3-(benzofuran-2-yl)quirioxaline-2-yloxy)-N-(cyclopropylsulfonyl)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide hydrochloride
  • Figure US20150119319A1-20150430-C00082
  • The title compound was prepared according to the procedure utilized for the preparation of Example 14a, replacing the product of Example 13 with the product of Example 15. (quantitative yield).
    • Example 16 N-((2R,6S,13aS,14aR,16aS)-2-(3-(benzofuran-2-yl)quinoxaline-2-yloxy)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl)-5-methylisoxazole-3-carboxamide
  • Figure US20150119319A1-20150430-C00083
  • The title compound was prepared according to the procedure utilized for the preparation of Example 14, replacing the product of Example 14a with the product of Example 16a. (68% yield).
  • MS (ESI): m/z=860.3 [M+H], 858.4 [M−H].
  • Example 16 provided an IC50 of between 0.1 and 0.5 nM in a 1a enzyme assay; an IC50 of between 0.1 and 0.5 nM in a 1b enzyme assay; a HUM stability value of between 50 and 100 μl/min/mg; an EC50 of between 1.0 and 2.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC50 of <1.0 nM in a replicon cell line assay in a 1b-con1 background.
    • Example 17 (2R,6S,13aS,14aR,16aS)-2-(3-(benzofuran-2-yl)quinoxaline-2-yloxy)-N-(cyclopropylsulfonyl)-12,12-difluoro-6-(1-methyl-1H-pyrazole-3-carboxamido)-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide
  • Figure US20150119319A1-20150430-C00084
    • Example 17
  • Figure US20150119319A1-20150430-C00085
  • The title compound was prepared according to the procedure utilized for the preparation of Example 16, replacing 5-methylisoxazole-3-carboxylic acid with 1-methyl-1H-pyrazole-3-carboxylic acid. (96% yield). MS (ESI): m/z=859.0 [M+H], 857.4 [M−H].
  • Example 17 provided an IC50 of between 0.1 and 0.5 nM in a 1a enzyme assay; an IC50 of <0.1 nM in a 1b enzyme assay; a FILM stability value of <50 μl/min/mg; an EC50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC50 of <1.0 nM in a replicon cell line assay in a 1b-con1 background.
    • Example 18 N-((2R,6 S,13aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecallydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl)-5-methylisoxazole-3-carboxamide
  • Figure US20150119319A1-20150430-C00086
    • Example 18a (2R,6S,13aS,14aR,16aS,Z)-ethyl 6-(tert-butoxycarbonylamino)-5,16-dioxo-2-(phenanthridin-6-yloxy)-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • Figure US20150119319A1-20150430-C00087
  • To (2S,6S,13aS,14aR,16aS,Z)-ethyl 2-(4-bromophenylsulfonyloxy)-6-(tert-butoxycarbonylamino)-5,16-dioxo-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (9.00 g, 12.6 mmol) and phenanthridin-6(5H)-one (3.08 g, 15.8 mmol) was added DMSO (50 ml). To this mixture was added cesium carbonate (6.17 g, 18.9 mmol) and the resulting mixture was heated at 75° C. for 3 hr. The reaction mixture was cooled to room temperature, diluted with water (400 ML) and neutralized with HCl (2N, 7.8 mL), The mixture was filtered and the white solid was rinsed with water. The solid was taken up in dichloromethane and filtered to remove insoluble phenanthridinone. The filtrate was concentrated and the residue was purified flash chromatography on silica gel (4:6 hexane/ethyl acetate) to provide the title compound (2R,6S,13aS,14aR,16aS,Z)-ethyl 6-(tert-butoxycarbonylamino)-5,16-dioxo-2-(phenanthridin-6-yloxy)-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate as a pale yellow solid (5.07 g, 60% yield).
    • Example 18b (2R,6S,13aS,14aR,16aS,Z)-ethyl 6-amino-5,16-dioxo-2-(phenanthridin-6-yloxy)-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate hydrochloride
  • Figure US20150119319A1-20150430-C00088
  • To a solution of (2R,6S,13aS,14aR,16aS,Z)-ethyl 6-(tert-butoxycarbonylamino)-5,16-dioxo-2-(phenanthridin-6-yloxy)-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (Example 18a, 6.25 g, 9.32 mmol) dissolved in Ethyl acetate (50 ml) was added 4 N hydrogen chloride in dioxane (44.3 ml, 177 mmol) and the reaction mixture was stirred at rt for 6 h. The solvent was evaporated under reduced pressure to give a white solid which was rinsed with ethyl acetate. The filtered solid was dried to give (2R,6S,13aS,14aR,16aS,Z)-ethyl 6-amino-5,16-dioxo-2-(phenanthridin-6-yloxy)-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate, Hydrochloric Acid (5.52 g, 98% yield)
    • Example 18c (2R,6S,13aS,14aR,16aS,Z)-ethyl 6-(5-methylisoxazole-3-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • Figure US20150119319A1-20150430-C00089
  • To a suspension of (2R,6S,13aS,14 aR,16aS,Z)-ethyl 6-amino-5,16-dioxo-2-(phenanthridin-6-yloxy)-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate, Hydrochloric Acid (Example 18b, 5.00 g, 8.24 mmol), 5-methylisoxazole-3-carboxylic acid (1.15 g, 9.06 mmol) and 2-(3H-[1,2,3]triazolo[4,5-b]pyridin-3-yl)-1,1,3,3-tetramethylisouronium hexafluorophosphate(V) (3.44 g, 9.06 mmol) in dichloromethane (82 ml) was added N-ethyl-N-isopropylpropan-2-amine (5.03 ml, 28.8 mmol). The mixture was stirred at rt for 2 h, and then quenched with saturated aqueous sodium carbonate solution. The organic layer was washed with 1N HCl, separated, filtered, dried over anhydrous magnesium sulfate and evaporated under reduced pressure to provide a white foam.
  • This material was purified flash chromatography on silica gel (4:1 dichloromethane/ethyl acetate) to give (2R,6S,13aS,14aR,16aS,Z)-ethyl 6-(5-methylisoxazole-3-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (4.5 g, 80% yield).
    • Example 18d (2R,6S,13aS,14aR,16aS,Z)-6-(5-methylisoxazole-3-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexalecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid
  • Figure US20150119319A1-20150430-C00090
  • To a solution of (2R,6S,13aS,14aR,16aS,Z)-ethyl 6-(5-methylisoxazole-3-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (Example 18c, 3.4 g, 5.0 mmol) in tetrahydrofuran (16.7 ml), ethanol (8.4 mL), and water (8.4 mL) was added lithium hydroxide monohydrate (1.36 g, 32.5 mmol). The mixture was stirred at 50° C. for 2 h, the solvent was evaporated under reduced pressure, and the residue partitioned between water and ethyl acetate. The aqueous layer was separated, diluted with ethyl acetate, and washed with 1N HCl. The organic layer was dried over anhydrous sodium sulfate, filtered, and evaporated under reduced pressure to give (2R,6S,13aS,14aR,16aS,Z)-6-(5-methylisoxazole-3-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid (3.05 g, 94% yield) as a white solid.
    • Example 18e (2R,6S,13 aS,14aR,16aS,Z)-tert-butyl 6-(5-methylisoxazole-3-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • Figure US20150119319A1-20150430-C00091
  • To a solution of (2R,6S,13aS,14aR,16aS,Z)-6-(5-methylisoxazole-3-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid (Example 18d, 0.84 g, 1.3 mmol) in toluene (3.8 ml) heated at 85° C. was added 1,1-di-tert-butoxy-N,N-dirnethylmethanamine (0.927 ml, 3.87 mmol) dropwise, and the mixture was stirred at 85° C. for 16 hr. The reaction was only 60% complete as shown by LCMS and additional 0.93 mL of 1,1-di-tert-butoxy-N,N-dimethylmethanamine was added in two portions over two hours. The solvent was evaporated and the residue was purified via flash chromatography (1:4 dichloromethane/ethyl acetate) to provide (2R,6S,13aS,14aR,16aS,Z)-tert-butyl 6-(5-methylisoxazole-3-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrmlo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (720 mg, 1.02 mmol, 79% yield) as a white solid.
    • Example 18f (2R,6S,13aS,14aR,16aS)-tert-butyl 12-hydroxy-6-(5-methylisoxazole-3-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • Figure US20150119319A1-20150430-C00092
  • To a solution of (2R,6S,13aS,14aR,16aS,Z)-tert-butyl 6-(5-methylisoxazole-3-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)-1,2,3,5,6,7,8,9,10,11,13a14,14a,15,16,16a-hexadecabydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (Example 18e, 720 mg, 1.02 mmol) in tetrahydrofuran (10 mL) stirring at 0° C. was added borane tetrahydrofuran complex (1 M in tetrahydrofuran, 6.10 mL, 6.10 mmol). The ice bath was removed after the addition was complete and the reaction mixture was stirred at rt for 0.5 hr. The mixture was cooled to 0° C. and aqueous sodium hydroxide solution (2.5 M, 6.10 mL, 15.26 mmol) was added followed by hydrogen peroxide solution (2.494 rnL, 24.41 mmol). The reaction mixture was stirred at rt for 1 hr. The mixture was then partitioned between ethyl acetate and water, and the organic layer was washed with brine, dried over anhydrous sodium sulfate, filtered, and evaporated under reduced pressure. The solid residue after solvent evaporation was purified via flash chromatography on silica gel (5% methanol/dichloromethane) to give 486 mg of a mixture of products. This material was repurified by preparative thin layer chromatography (5% methanol/dichloromethane) to provide the title compound (2R,6S,13aS,14aR,16aS)-tert-butyl 12-hydroxy-6-(5-methylisoxazole-3-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopenta decine-14a-carboxylate (170 mg, 23%) along with the α-hydroxy isomer (200 mg, 27% yield).
    • Example 18 g (2R,6S,13aS,14aR,16aS)-tert-butyl 6-(5-methylisoxazole-3-carboxamido)-5,12,16-trioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • Figure US20150119319A1-20150430-C00093
  • To a solution of oxalyl chloride (0.017 ml, 0.198 mmol) in dichloromethane (0.6 ml) cooled to −60° C. was added DMSO (0.030 ml, 0.419 mmol) dropwise. The mixture was stirred for 15 min and added dropwise a solution of compound (2R,6S,13aS,14aR,16aS)-tert-butyl 12-hydroxy-6-(5-methylisoxazole-3-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (Example 18 h, 80 mg, 0.11 mmol) in dichloromethane (0.4 ml). The reaction mixture was stirred for 20 min at −60° C., and triethylamine (0.123 ml, 0.882 mmol) was added dropwise. The mixture was stirred at −60° C. for 5 min, and allowed to warm to room temperature with stirring for 10 min. The reaction mixture was quenched with water, stirred for 15 min, and diluted with dichloromethane. The organic layer was separated, dried over anhydrous sodium sulfate, filtered, and evaporated under reduced pressure to give a foamy material. The crude product was purified by flash chromatography on silica gel (5% methanol/dichloromethane) to provide the title compound (2R,6S,13aS,14aR,16aS)-tert-butyl 6-(5-methyl isoxazole-3-carboxamido)-5,12,16-trioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (47 mg, 59° A yield).
    • Example 18 h (2R,6S,13aS,14aR,16aS)-tert-butyl 12,12-difluoro-6-(5-methylisoxazole-3-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • Figure US20150119319A1-20150430-C00094
  • A solution of (2R,6S,13aS,14aR,16aS)-tert-butyl 6-(5-methylisoxazole-3-carboxamido)-5,12,6-trioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (Example 18 g, 47 mg, 0.065 mmol) in Morpho-DAST (317 μl, 2.60 mmol) was stirred at rt for 40 h. The resulting mixture was dissolved in 1 mL dichloromethane and added dropwise to a cooled solution of saturated aqueous sodium carbonate. The mixture was stirred for 10 min and extracted with dichloromethane. The organic layer was separated, dried over anhydrous sodium sulfate, filtered, and evaporated under reduced pressure. The crude material was purified by preparative thin layer chromatography (3% methanol/dichloromethane) to provide the title compound (2R,6S,13aS,14aR,16aS)-tert-butyl 12,12-difluoro-6-(5-methylisoxazole-3-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (20 mg, 41% yield) as a white solid.
    • Example 18i (2R,6S,13aS,14aR,16aS)-12,12-difluoro-6-(5-methylisoxazole-3-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid
  • Figure US20150119319A1-20150430-C00095
  • To a solution of (2R,6S,13aS,14aR,16aS)-tert-butyl 12,12-difluoro-6-(5-methylisoxazole-3-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxyate (Example 18 h, 20 mg, 0.027 mmol) in ethyl acetate (100 μl) stirring at rt was added 4N hydrogen chloride (134 μl, 0.536 mmol) in dioxane. The reaction mixture was stirred for 24 h, and the solvent was evaporated under reduced pressure. The residue was purified by preparative thin layer chromatography (10% methanol/dichloromethane) to provide the title compound (2R,6S,13aS,14aR,16aS)-12,12-difluoro-6-(5-methylisoxazole-3-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid (10.2 mg, 55%)
    • Example 18 N-((2R,6 S,13 aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrOlo[1,2-a][1,4]diazacyclopentadecin-6-yl)-5-methylisoxazole-3-carboxamide
  • Figure US20150119319A1-20150430-C00096
  • A solution of 2R,6S,13aS,14aR,16aS)-12,12-difluoro-6-(5-methylisoxazole-3-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclo pentadecine-14a-carboxylic acid (Example 18i, 21 mg, 0.030 mmol) and di(1H-imidazol-1-yl)methanone (10.96 mg, 0.068 mmol) in dichloroethane (400 μl) was stirred for 2 hr at 42° C. To this mixture was added methylsulfonylcyclopropane (11.0 mg, 0.091 mmol) and 2,3,4,6,7,8,9,10-octahydropyrimido[1,2-d]azepine (13.8 μl, 0.091 mmol) and the reaction mixture was stirred for 2 h at 42° C. The reaction mixture was diluted with ethyl acetate (7 mL) and washed with 10 mL of 1 N HCl followed by saturated aqueous sodium chloride solution. The organic layer was dried over anhydrous sodium sulfate, filtered, and evaporated under reduced pressure. The resulting residue was purified by flash chromatography on silica gel (3% methanol/dichloromethane). The resulting material was further purified by reverse phase HPLC (40% acetonitrile/water with 0.1% TFA to 100% water) to provide the title compound N-((2R,6S,13aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl)-5-methylisoxazole-3-carboxamide (16 mg, 66.3% yield). MS (EST): nalz=793.1 [1\11-1+1], 791.0 [M−H].
  • Example 18 provided a HLM stability value of between 50 and 100 μl/min/mg; an EC50 of <1.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC50 of <1.0 nM in a replicon cell line assay in a 1b-con1 background.
    • Example 19 tert-butyl (2R,6S,13aS,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate
  • Figure US20150119319A1-20150430-C00097
    • Example 19a (2R,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-12-hydroxy-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • Figure US20150119319A1-20150430-C00098
  • To a solution of (2R,6S,13aS,14aR,16aS,Z)-ethyl 6-(tert-butoxycarbonylamino)-5,16-dioxo-2-(phenanthridin-6-yloxy)-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (Example 18a, 3.2 g, 477 mmol) in tetrahydrofuran (41.5 ml) at rt with a water bath was added dropwise borane tetrahydrofuran complex (1 M in tetrahydrofuran, 14.3 ml, 14.3 mmol) and stirred at room temperature for 1 h. The mixture was cooled to 0° C. and sodium hydroxide (11.5 ml, 28.6 mmol) was added dropwise followed by hydrogen peroxide (4.0 ml, 43 mmol), and the reaction mixture stirred for 1.5 h at 0° C. The mixture was diluted with ethyl acetate and water, and the organic layer was washed with saturated aqueous sodium chloride solution. The resulting solid was purified via flash chromatography on silica gel (5% methanol in dichloromethane) to provide the title compound (2R,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-12-hydroxy-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (1.06 g, 1.539 mmol, 32.3% yield). The α-hydroxy analog (2R,6S,13R,13aR,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-13-hydroxy-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (0.7 g, 21% yield) was also isolated.
    • Example 19b (2R,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-5,12,16-trioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • Figure US20150119319A1-20150430-C00099
  • To a solution of oxalyl chloride (0.242 ml, 2.77 mmol) in dichloromethane (5.13 ml) stirring at 60° C. was added DMSO (0.415 ml, 5.85 mmol) dropwise. The mixture was stirred for 20 min and added dropwise to a solution of (2R,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-12-hydroxy-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydro cyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (Example 19a, 1.06 g, 1.54 mmol) in dichloromethane (5.13 ml). The reaction mixture was stirred for 20 min −60° C., and triethylamine (1.716 ml, 12.31 mmol) was added. The mixture was stirred for 10 min at −60° C., and then stirred for another 20 min at room temperature. The reaction mixture was quenched with water and stirred for 15 mm, and diluted with dichloromethane. The organic layer was separated, dried over anhydrous sodium sulfate, filtered, and evaporated under reduced pressure to give a foamy material. The crude product was purified by flash chromatography on silica gel (5% methanolldichloromethane). The fractions containing the title compound were collected and rechromatographed on a silica gel column (65% ethyl acetate/hexane) to provide the title compound (2R,6S,13 aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-5,12,16-trioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (680 mg, 64.3% yield) as a white solid.
    • Example 19c (2R,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-12,12-difluoro-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropatelpyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate
  • Figure US20150119319A1-20150430-C00100
  • A solution of (2R,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-5,12,16-trioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (Example 19b, 680 mg, 0.990 mmol) in Morpho-DAST (2.4 mL, 20 mmol) was stirred at room temperature for 48 h. The reaction mixture was dissolved in 2 mL dichloromethane and added dropwise into a cooled solution of saturated aqueous sodium carbonate solution, stirred for 10 min, and extracted with dichloromethane. The organic layer was dried over anhydrous sodium sulfate, filtered, and evaporated under reduced pressure. The residue was purified by preparative thin layer chromatography on silica gel (3, methanol/dichloromethane) to provide the title compound (2R,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-12,12-difluoro-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydro cyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylate (320 mg, 45.6% yield) as a white solid.
    • Example 19d (2R,6S,13aS,14aR,16aS)-6-(tert-butoxycarbonylamino)-12,12-difluoro-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid
  • Figure US20150119319A1-20150430-C00101
  • To a solution of (2R,6S,13aS,14aR,16aS)-ethyl 6-(tert-butoxycarbonylamino)-12,12-difluoro-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclo pentadecine-14a-carboxylate (Example 19c, 320 mg, 0.451 mmol) in tetrahydrofuran (1505 up, water (752 μl), and ethanol (752 μl) was added lithium hydroxide monohydrate (123 mg, 2.93 mmol) at room temperature The mixture was stirred at room temperature for 16 h and then heated at 37° C. for 6 h. The mixture was cooled to room temperature and then eluted through a pad of silica gel with 10% methanol/dichloromethane, and evaporated under reduced pressure. The crude material was purified by flash chromatography on silica gel (10% methanol/dichloromethane) to provide the title compound (2R,6S,13aS,14aR,16aS)-6-(tert-butoxycarbonylamino)-12,12-difluoro-5,16-dioxo-2-(phenanthridin-6-yloxy)octadeca hydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid (215 mg, 70.0° A, yield) as a white solid.
    • Example 19
  • Figure US20150119319A1-20150430-C00102
  • A solution of (2R,6S,13 aS,14aR,16aS)-6-(tert-butoxycarbonylamino)-12,12-difluoro-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydro cyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxylic acid (215 mg, 0.316 mmol) and di(1H-imidazol-1-yl)methanone (Example 19d, 114 mg, 0.701 mmol) in dichloroethane (2 mL) was stirred for 2 h at room temperature. To this mixture was added cyclopropanesulfonamide (115 mg, 0.948 mmol) and 2,3,4,6,7,8,9,10-octahydropyrimido[1,2-a]azepine (0.143 mL, 0.948 mmol, dried with 4 A sieves powder at 42° C. for 2 h prior to usage), and the solution was stirred for 2 h. The reaction mixture was diluted with ethyl acetate (7 mL) and washed with 10 mL of 0.1 N HCl followed by saturated aqueous sodium chloride solution. The organic layer was dried with anhydrous sodium sulfate, filtered, and evaporated under reduced pressure leaving 0.23 g crude solid which was purified via flash chromatography on silica gel (3% methanol/dichloromethane) to provide the title compound tert-butyl (2R,6S, I 36,14aR,16aS)-14a-(cyclopropylsulfonylcarbamoyl)-12,12-difluoro-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolb[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate (195 mg, 0.249 mmol, 79% yield). MS (ESI): m/z=784.1 [M+H]. Example 19 provided an IC50 of <0.1 nM in a 1a enzyme assay; an IC50 of <0.1 0 nM in a 1b enzyme assay; a HLM stability value of >100 μl/min/mg; an EC50 of <1.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC50 of <1.0 nM in a replicon cell line assay in a 1b-con1 background.
    • Example 20 (2R,6S,13aS,14aR,16aS)—N-(cyclopropylsulfonyl)-12,12-difluoro-6-(5-methylpyrazine-2-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide
  • Figure US20150119319A1-20150430-C00103
  • Example 20a. (2R,6S,13aS,14aR,16aS)-6-amino-N-(cyclopropylsulfonyl)-12,12-difluoro-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopenta decine-14a-carboxamide
  • Figure US20150119319A1-20150430-C00104
  • To a solution of tert-butyl (2R,6S,13aS,14aR,16aS)-14a-(cyclopropylsulthnylcarbamoyl)-12,12-difluoro-5,16-dioxo-2-(phenanthtidin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-ylcarbamate (Example 19, 195 mg, 0.249 mmol) in ethyl acetate (1 mL) stirring at room temperature was added 4 N hydrogen chloride (1.24 mL, 5.0 mmol) in dioxane. The reaction mixture was stirred for 4 h, and then the solvent was evaporated under reduced pressure. The residue was triturated with ethyl acetate and the product was filtered as a white solid. The solid was dissolved in methanol and the solvent was evaporated to provide the title compound (2R,6S,13 aS,14aR,16aS)-6-amino-N-(cyclopropylsulfonyl)-12,12-difluoro-5,16-dioxo-2-(phenarithridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide, Hydrochloric Acid (178 mg, 0.247 mmol, 99% yield).
    • Example 20 (2R,6S,13aS,14aR,16aS)—N-(cyclopropylsulfonyl)-12,12-difluoro-6-(5-methylpyrazine-2-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide
  • Figure US20150119319A1-20150430-C00105
  • To a mixture of a (2R,65,13aS,14aR,16aS)-6-amino-N-(cyclopropylsulfonyl)-12,12-difluoro-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide, Hydrochloric Acid (Example 20a, 12 mg, 0.017 mmol), 5-methylpyrazine-2-carboxylic acid (2.53 mg, 0.018 mmol) and 2-(3H-[1,2,3]triazolo[4,5-b]pyridin-3-yl)-1,1,3,3-tetramethylisouronium hexafluorophosphate(V) (7.0 mg, 0.018 mmol) in dichloromethane (167 μl) was added N-ethyl-N-isopropylpropan-2-amine (10.18 μl, 0.058 mmol), and the resulting mixture was stirred for 3 h at room temperature. 0.1 N HCl was added and the organic layer was separated, dried over anhydrous sodium sulfate, and filtered. The residue after solvent evaporation was eluted through silica gel with 10% acetone/dichloromethane. The fractions containing the title compound were combined and the resulting crude material was purified by preparative thin layer chromatography on silica gel (20:1 dichloromethane/methanol) to provide the title compound (2R,6S,13aS,14aR,16aS)—N-(cyclopropylsulfonyl)-12,12-difluoro-6-(5-methylpyrazine-2-carboxamido)-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide (8 mg, 60% yield) as a white solid. MS (ESI): m/z=804.1 [M+H]. Example 20 provided a HLM stability value of <50 μl/min/mg; an EC50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC50 of between 1.0 and 2.0 nM in a replicon cell line assay in a 1 b-con1 background.
    • Example 21 (2R,6S,13aS,14aR,16aS)—N-(cyclopropylsulfonyl)-6-(1,5-dimeth 4-1H-pyrazole-3-carboxamido)-12,12-difluoro-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide
  • Figure US20150119319A1-20150430-C00106
  • Figure US20150119319A1-20150430-C00107
  • To a mixture of (2R,6S,13aS,14aR,16aS)-6-amino-N-(cyclopropylsulfonyl)-12,12-difluoro-5,16-dioxo-2-(phenanthridin-6-yloxy-)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide, Hydrochloric Acid (Example 20a, 12 mg, 0.017 mmol), 1,5-dimethyl-1H-pyrazole-3-carboxylic acid (2.57 mg, 0.018 mmol) and 2-(3H-[1,2,3]triazolo[4,5-b]pyridin-3-yl)-1,1,3,3-tetramethylisouronium hexafluorophosphate(V) (7.0 mg, 0.018 mmol) in dichloromethane (167 μl) was added N-ethyl-N-isopropylpropan-2-amine (10.18 μl, 0.058 mmol) and the mixture was stirred for 3 h at room temperature. 0.1 N HCl was added and organic layer was separated, dried over anhydrous sodium sulfate, and filtered. The residue after solvent evaporation under reduced pressure was eluted through silica gel with 10% acetone/dichloromethane. The fractions containing the title compound were combined and the resulting crude material was purified by preparative thin layer chromatogaphy on silica gel (20:1 dichloromethane/methanol) to provide the title compound (2R,6S,13aS,14aR,16aS)—N-(cydopropylsulfonyl)-6-(1,5-dimethyl-1H-pyrazole-3-carboxamido)-12,12-difluoro-5,16-dioxo-2-(phenanthridin-6-yloxy)octadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a-carboxamide (8 mg 60% yield) as a white solid. MS (ESI): m/z=806.1 [M+1-1]. Example 21 provided a FILM stability value of <50 μl/min/mg; an EC50 of between 2.0 and 5.0 nM in a replicon cell line assay in a 1a-H77 background, and an EC50 of <1.0 nM in a replicon cell line assay in a 1b-con1 background.
    • Example 22 Measurement of Potency of Inhibition with Purified NS3 Protease Enzyme
  • The activity of recombinant HCV NS3 proteases derived from isolates representing genotypes 1, 2, 3 or 4 is measured by cleavage of the following peptide substrate:
  • Figure US20150119319A1-20150430-C00108
  • The substrate is labeled with a fluor and a fluorescence quencher. Cleavage results in release of the quencher and an increase in fluorescence. NS3 protease is incubated with a dilution series of inhibitor in 150 mM NaCl, 10% Glycerol, 5 mM. DTT, with or without 0.01% dodecyl maltoside for either 30 minutes or 300 minutes. Substrate is added at a concentration of 5 uM to initiate the reaction, and fluorescence is measured at 2 minute intervals for 30 minutes. Enzyme concentrations range from 10 to 100 nM in the absence of detergent, or 10-fold lower in the presence of detergent. Substrate peptides are labeled with either EDANS and DABCYL (excitation 355 nm, emission 485 nm) or TAMRA and QSY (excitation 544 nm, emission 590 nm). For routine IC50 determination, 3-fold serial dilutions starting with initial concentrations of 100 μM, 200 μM, or 2 mM are used. For compounds with Ki values approaching or lower than the enzyme concentration, a tight-binding calculation format is used, with 24 dilutions of inhibitor covering a range of 0 to 100 nM inhibitor. Ki values are calculated using the tight binding assay format, according to the following equation:

  • V=A{[(K+I−E)2+4KE])1/2−(K+I−E)},
  • where I=total inhibitor concentration, E=active enzyme concentration, K=apparent Ki value and A=[kcat)S/2][Km=(S)].
    • Replicon Cell Lines
  • Two subgenomic replicon cell lines can be used for compound characterization in cell culture: one derived from genotype 1a and one derived from genotype 1 b. Both replicon constructs are bicistronic subgenomic replicons essentially similar to those described by Bartenschlager and coworkers (Lohmann et al., Science (1999) 285(5424):110-113). The genotype 1a replicon construct contains the NS3-NS5B coding region derived from the H77 strain of HCV (1a-H77) (Blight et al. J Virol (2003) 77(5):3181-3190). The first cistron of the construct consists of the first 36 nucleotides of the HCV1a-H77 core gene fused to a firefly luciferase reporter and a neomycin phosphotransferase (Neo) selectable marker. The luciferase and Neo coding regions are separated by the FMDV 2a protease. The second cistron contains the NS3-NS5B coding region derived from 1a-H77 with the addition of adaptive mutations E1202G in NS3, K1691R in NS4A, and K2040R and S2204I in NS5A. The 1b-Con-1 replicon construct is identical to the 1a-H77 replicon, except that the 5′ and 3′ NTRs and the NS3-NS5B coding region can be derived from the 1b-Con-1 strain (Blight et al., Science (2000) 290(5498):1972-1974), and the adaptive mutations are E1202G and T12801 in NS3 and S2204I in NS5A.
    • Replicon Compound Testing
  • Replicon cell lines can be maintained in Dulbecco's modified Eagles medium (DMEM) containing 100 IU/ml penicillin, 100 mg/ml streptomycin (Invitrogen), 200 mg/ml G418 (Invitrogen) and 10% (v/v) fetal bovine serum (FBS). Replicon-containing cells can be seeded into 96 well plates at a density of 5000 cells per well in 100 μl DMEM containing 5% FBS. The next day, the compound can be initially diluted in dimethyl sulfoxide (DMSO) to generate a 200× stock of the inhibitor in a series of 8 half-log dilutions. The dilution series can then be diluted 100-fold in the medium containing 5% FBS. One hundred microliters of medium with the inhibitor can be added to each well of the overnight cell culture plate already containing 100 μl of DMEM with 5% FBS. In assays where the protein binding effect on inhibitor potency is assessed, the medium from the overnight cell culture plates can be replaced with 200 μl DMEM containing 40% human plasma (innovative Research) plus 5% FBS as well as compound. The cells can be grown for 4 days in tissue culture incubators. The inhibitory effects of compounds against the replicons can be determined by measuring either the level of luciferase or HCV RNA. The luciferase assay can be conducted using a Luciferase Assay System kit (Promega) following the manufacturer's instructions. Briefly, the cell culture medium is removed and wells are washed with 200 μl of phosphate-buffered saline. To each well Passive Lysis buffer (Promega, WI) is added and the plates are incubated for 30 min with rocking to lyse the cells. Luciferin solution (50 μl, Promega) is added, and luciferase activity is measured with a Victor II luminometer (Perkin-Elmer). To determine HCV RNA levels, RNA extractions can be performed using the CellsDirect kit (Invitrogen), and the HCV RNA copy number can be measured using the SuperScript III Platinum One-Step qRT-PCR system (Invitrogen) and primers specific to the HCV 5′ nontranslated region. Cytotoxicity can be determined by the 3-[4,5-dimethythiazol-2-yl]-2,5-diphenyltetrazolium bromide (MTT) colorimetric assay as follows. Replicon cells is plated in 96-well plates (4000 cells per well), the next day compound dilutions are added as in the activity assay, and the cells are grown in the presence of the inhibitors for 4 days. The MTT solution is diluted in DMEM containing 5% FBS and 60 μl of the solution is added to the cells. After 4 hrs, the cells are solubilized by the addition of 30 □μl SDS (20% in 0.02 N HCl). The plates are incubated overnight and the optical density can be measured at 570 nm. To determine compounds' EC50 and TD50, luciferase, RNA inhibition and MTT data can be analyzed using the GraphPad Prism 4 software (equation: sigmoidal dose-response variable slope).
    • Mutants in Transient Replicons
  • Mutations detected in resistance selection studies can be introduced into wild type transient replicon constructs based on genotypes 1a-H77 and 1b-N. Both replicons are bicistronic sub-genomic constructs containing a firefly luciferase reporter similar to those described above, but they do not contain a Neo selectable marker and are therefore only suitable for transient replication assays. The 1a-H77 replicon for transient assays further differs from the replicon in the stable cell line in that it contains NS2 through NS5B in the second cistron. The 1b-N strain replicon contains NS3 through NS5B in the second cistron, with adaptive mutations E1202G in NS3 and S2204I in NS5A. Mutagenesis can be performed using the Stratagene QuikChange XL 11 site-directed mutagenesis kit. Mutants' sequences can be confirmed, plasmids can be linearized with Xba I restriction enzyme and used as template for in vitro transcription reactions to make mutant replicon RNA for transient transfections. In vitro transcription can be performed with the T7 Megascript kit (Ambion).
  • Transient replicon transfections can be performed essentially as described by Mo et al. (Antimierob Agents Chemother (2005) 49(10):4305-4314) with slight modifications. Fifteen micrograms of template RNA can be used to electroporate 3×106 cells in a 200 μl volume in a 0.2 cm cuvette. The cells used for transient transfections can be Huh7 cells obtained by curing replicon-containing cells with IFN (Mo et al., supra). Electroporation can be done with a Gene Pulser II (Bio-Rad, CA) at 480V and 25 μF, using two manual pulses. Transfected cells can be diluted to 7.5×10 cells/ml and plated in 96 well plates at 7.5×103 cells per well in DMEM with 5% FBS and 100 IU/ml penicillin, 100 mg/ml streptomycin (Invitrogen). Four hours post-transfection, one plate is harvested for luciferase measurement; this plate may provide a measure of the amount of input RNA that can be translated, and thus of transfection efficiency. To the remaining plates, test compound serial dilutions in DMSO can be added (0.5% DMSO final concentration), and plates are incubated for 4 days.
  • Exemplary compounds of the present invention were tested for their anti-HCV activities. Many of the compounds tested showed unexpected anti-HCV activities, including excellent activities in biochemical assays against HCV proteases representing various HCV genotypes, superior activities in standard HCV replicon assays including activity against 1a-H77 and 1b-con1 HCV strains in the absence or presence of 40% human plasma, and/or excellent activities in transient replicon assays against drug-resistant mutants in a number of different HCV genetic backgrounds.
  • The contents of all references (including literature references, issued patents, published patent applications, and co-pending patent applications) cited throughout this application are hereby expressly incorporated herein in their entireties by reference. Unless otherwise defined, all technical and scientific terms used herein are accorded the meaning commonly known to one with ordinary skill in the art.
  • Those skilled in the art will recognize, or be able to ascertain using no more than routine experimentation, many equivalents of the specific embodiments of the invention described herein. Such equivalents are intended with be encompassed by the following claims.

Claims (14)

1. A compound of formula I or formula I′;
Figure US20150119319A1-20150430-C00109
or pharmaceutically acceptable salts, esters, hydrates, solvates, polymorphs, or prodrugs thereof,
wherein:
X is an optionally substituted carbocyclic, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl;
Z is O, S(O)m, NRx, OC(O), C(O), C(O)O, NRxC(O), or C(O)NRx;
each R, is independently H or alkyl;
J is —C(O)—, —O—C(O)—, —C(O)O—, —N(R3)—C(O)—, —C(S)—, —C(═NR4)—, —N(R3)—, —S(O)—, or —S(O2)— or absent;
A is selected from the group consisting of the following:
(i) H, aryl; substituted aryl; heteroaryl; substituted heteroaryl;
(ii) heterocyclyl or substituted heterocyclyl; and
(iii) —C1-C8 alkyl, C2-C8 alkenyl or —C2-C8 alkynyl, each containing 0, 1, 2, or 3 heteroatoms independently selected from O, S, and N; substituted —C1-C8 alkyl, substituted —C2-C8 alkenyl or substituted —C2-C8 alkynyl, each containing 0, 1, 2, or 3 heteroatoms independently selected from O, S and N; —C3-C12 carbocyclic, substituted —C3-C12 carbocyclic; —C3-C12 cycloalkenyl, or substituted —C3-C12 cycloalkenyl;
E is -G-R5;
wherein G is absent; optionally substituted alkylene, optionally substituted alkenylene, optionally substituted alkynylene, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N;
or —O—, —S—, —N(R3)—, —N(R3)S(Op), —N(R3)C(O), —N(R3)C(O)S(Op)—, —OS(Op)—, —C(O)S(Op)—, or —C(O)N(R3)S(Op)—;
each p is independently 0, 1, or 2;
R5 is H; optionally substituted alkyl, optionally substituted alkenyl, or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted carbocyclic, optionally substituted heterocyclic, optionally substituted aryl, or optionally substituted heteroaryl;
Figure US20150119319A1-20150430-P00001
denotes a carbon-carbon single or double bond (i.e.,
Figure US20150119319A1-20150430-C00110
means
Figure US20150119319A1-20150430-C00111
each of Ra, Rb, Rc, and Rd are each independently H or halo, wherein at least two of Ra, Rb, Rc, and Rd are halo; and Rb and Rd are absent if
Figure US20150119319A1-20150430-P00001
is a double bond
each R3 and R4 is independently selected at each occurrence from the following: H, optionally substituted alkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; and optionally substituted carbocyclic;
L is absent or a C2-C5 saturated or unsaturated chain, optionally containing one to three heteroatoms independently selected from O, N and S(O)q wherein L is optionally substituted with one or more substituents selected from halogen, hydroxy, mercapto, amino, carboxy, nitro, oxo, phosphonoxy, phosphono, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl and C2-C6alkynyl, wherein each C2-C6alkyl, C2-C6alkenyl and C2-C6alkynyl, group is optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, carboxy, nitro, oxo, phosphonoxy, phosphono, thioxo, formyl and cyano;
j=independently 0, 1, 2, 3, or 4;
k=independently 0, 1, 2, or 3;
each m is independently 0, 1, or 2; and
q is independently 0, 1, or 2.
2. The compound of claim 1, wherein Z is O or OC(O); and ring X is cyciopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, adamantyl, cyclooctyl, [3.3.0]bicyclooctanyl, [4.3.0]bicyclononanyl, [4.4.0]bicyclodecanyl, [2.2.2]bicyclooctanyl, fluorenyl, phenyl, naphtliyi, indanyl, tetrahydronaphthyl, acridinyl, azocinyl, benzimidazolyl, benzofuranyl, benzothiofuranyl, benzothiophenyl, benzoxazolyl, benzthiazolyl, benztriazolyl, benztetrazolyl, benzisoxazolyl, benzisothiazolyl, benzimidazolinyl, carbazolyl, NH carbazolyl, carbolinyl, chromanyl, chromenyl, cinnolinyl, decahydroquinolinyl, 2H,6H 1,5,2 dithiazinyl, dihydrofuro[2,3 b]tetrahydrofuran, furanyl, furazanyl, imidazolidinyl, imidazolinyl, imidazolyl, 1H indazolyl, indolenyl, indolinyl indozinyl, indolyl, 3H indolyl, isoindolinyl, isoindolenyl, isobenzofuranyl, isochromanyl, isoindazolyl, isoindolinyl, isoindolyl, isoquinolinyl, isothiazolyl, isoxazolyl, morpholinyl, naphthyridinyl, octahydroisoquinolinyl, oxadiazolyl, 1,2,3 oxadiazolyl, 1,2,4 oxadiazolyl; 1,2,5-oxadiazolyl, 1,3,4 oxadiazolyl, oxazolidinyl, oxazolyl, oxazolidinyl, pyrimidinyl, phenanthridinyl, phenanthrolinyl, phenazinyl, phenothiazinyl, phenoxathiinyl, phenoxazinyl, phthalazinyl, piperazinyl, piperidinyl, pteridinyl, purinyl, pyranyl, pyrazinyl, pyrazolidinyl, pyrazolinyl, pyrazdlyl, pyridazinyl, pyridooxazole, pyridoimidazole, pyridothiazole, pyridinyl, pyridyl, pyrimidinyl, pyrrolidinyl, pyrrolinyl, 2H pyrrolyl, pyrrolyl, quinazolinyl, quinolinyl, 4H quinolizinyl, quinoxalinyl, quinuclidinyl, tetrahydrofuranyl, tetrahydroisoquinolinyl, tetrahydroquinolinyl, 6H 1,2,5 thiadiazinyl, 1,2,3-thiadiazolyl, 1,2,4 thiadiazolyl, 1,2,5 thiadiazolyl, thianthrenyl, thiazolyl, thienyl, thienothiazolyl, thienooxazolyl, thienoimidazolyl, thiophenyl, triazinyl, 1,2,3 triazolyl, 1,2,4 triazolyl, 1,2,5 triazolyl, 1,3,4 triazolyl, or xanthenyl; each of which may be optionally substituted.
3. The compound of claim 2, wherein ring X is phenanthridinyl, quinoxalinyl, quinolinyl, or isoindolinyl.
4. The compound of claim 2, wherein ring X is
Figure US20150119319A1-20150430-C00112
wherein
Y is N or —C(R″)—;
wherein if Y is —C(R″)—, then R′ and R″ taken together with the carbon atoms to which they are attached form a ring, which is optionally substituted;
R′ is H, alkyl, alkenyl, alkynyl, carbocyclic, heterocyclyl, aryl, or heteroaryl, each of which may be optionally substituted;
each R1 is independently selected from halogen, hydroxy, amino, —CN, —CF3, —N3, —NO2, —OR4, —SR4, —SOR4, —SO2R4, N(R3)S(O)2R4, —N(R3)(SO2)NR3R4, —NR3R4, —C(O)—OR4, —C(O)R4, —C(O)NR3R4, —N(R3)C(O)R4; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; optionally substituted alkyl, optionally substituted haloalkyl, optionally substituted alkenyl, or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N;
each n is independently 0, 1, 2, 3, or 4;
each R3 and R4 are independently selected at each occurrence from the following: optionally substituted alkyl, optionally substituted haloalkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl; optionally substituted heteroaryl; optionally substituted heterocyclic; optionally substituted carbocyclic; or hydrogen; and
k is 0, 1, or 2.
5. (canceled)
6. The compound of claim 1 wherein J is —C(O)—, or —O—C(O)—.
7. The compound of claim 1, wherein A is methyl, ethyl, propyl, iso-propyl, butyl, i-butyl, t-butyl, pentyl, hexyl, heptyl, phenyl, pyridyl, pyrimidyl, pyrazinyl, triazinyl, furanyl, thiophenyl, pyrrolyl, isoxazolyl, or pyrazolyl; each of which may be optionally substituted.
8. The compound of claim 1, wherein G is —N(R3)S(O)p— and R5 is cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, or cycloheptyl, each of which is optionally substituted.
9. The compound of claim 5, wherein Ra and Rb are F.
10. The compound of claim 5, wherein Rc and Rd are F.
11-17. (canceled)
18. A pharmaceutical composition comprising a therapeutically effective amount of a compound of claim 1 or a pharmaceutically acceptable salt, ester, or prodrug thereof, in combination with a pharmaceutically acceptable carrier or excipient.
19. A method of treating a viral infection in a subject, comprising administering to the subject a therapeutically effective amount of a compound of claim 1 or a pharmaceutically acceptable salt, ester or prodrug thereof.
20. A method of producing a compound of formula I, comprising the step of reacting a compound of formula I-a:
Figure US20150119319A1-20150430-C00113
with a compound of formula I-b:
Figure US20150119319A1-20150430-C00114
to arrive at a compound of formula I:
Figure US20150119319A1-20150430-C00115
wherein:
X is an optionally substituted carbocyclic, optionally substituted heterocyclyl, optionally substituted aryl, or optionally substituted heteroaryl;
Z is O, S(O)m, NRx, OC(O), C(O), C(O)O, NRxC(O), or C(O)NRx;
each Rx is independently H or alkyl;
Nuc is a nucleophile;
LG is a leaving group;
J is —C(O)—, —O—C(O)—, —C(O)O—, —N(R3)—C(O)—, —C(S)—, —C(═NR4)—, —N(R3)—, —S(O)—, or —S(O2)- or absent;
A is selected from the group consisting of the following:
(i) H, aryl; substituted aryl; heteroaryl; substituted heteroaryl;
(ii) heterocyclyl or substituted beterocyclyl; and
—C1-C8 alkyl, —C2-C8 alkenyl or —C2-C8 alkynyl, each containing 0, 1, 2, or 3 heteroatoms independently selected from O, S, and N; substituted —C1-C8 alkyl, substituted —C2-C8 alkenyl or substituted —C2-C8 alkynyl, each containing 0, 1, 2, or 3 heteroatoms independently selected from O, S and N; —C3-C12 carbocyclic, substituted —C3-C12 carbocyclic; —C3-C12 cycloalkenyl, or substituted —C3-C12 cycloalkenyl;
E is -G-R5;
wherein G is absent; optionally substituted alkylene, optionally substituted alkenylene, optionally substituted alkynylene, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N;
or —O—, —S—, —N(R3)S(Op)—, —N(R3)C(O)—, —N(R3) C(O)S(Op)—, —OS(Op)—, —C(O)S(O)—, or —C(O)N(R3)S(Op)—;
each p is independently 0, 1, or 2;
R5 is H; optionally substituted alkyl, optionally substituted alkenyl, or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted carbocyclic, optionally substituted heterocyclic, optionally substituted aryl, or optionally substituted heteroaryl;
Figure US20150119319A1-20150430-P00001
denotes a carbon-carbon single or double bond (i.e.,
Figure US20150119319A1-20150430-C00116
means or);
Figure US20150119319A1-20150430-C00117
each of Ra, Rb, Rc, and Rd are each independently H or halo, wherein at least two of Ra, Rb, Rc, and Rd are halo; and Rb and Rd are absent if
Figure US20150119319A1-20150430-P00001
is a double bond
each R3 and R4 is independently selected at each occurrence from the following; H, optionally substituted alkyl, optionally substituted alkenyl or optionally substituted alkynyl, each containing 0, 1, 2, or 3 heteroatoms selected from O, S, or N; optionally substituted aryl;
optionally substituted heteroaryl; optionally substituted heterocyclic; and optionally substituted carbocyclic;
L is absent or a C2-C5 saturated or unsaturated chain, optionally containing one to three heteroatoms independently selected from O, N and S(O)q, wherein L is optionally substituted with one or more substituents selected from halogen, hydroxy, mercapto, amino, carboxy, nitro, oxo, phosphonoxy, phosphono, thioxo, cyano, C1-C6alkyl, C2-C6alkenyl and C2-C6alkynyl, wherein each C2-C6alkenyl and C2-C6alkynyl, group is optionally substituted at each occurrence with one or more substituents selected from halogen, hydroxy, mercapto, amino, carboxy, nitro, oxo, phosphonoxy, phosphono, thioxo, formyl and cyano;
j=independently 0, 1, 2, 3, or 4;
k=independently 0, 1, 2, or 3;
each m is independently 0, 1, or 2; and
q is independently 0, 1, or 2.
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