CY1121741T1 - Χρηση του μεγεθους θραυσματων εξωκυτταριου dna για τον προσδιορισμο παραλλαγης αριθμου αντιγραφων - Google Patents
Χρηση του μεγεθους θραυσματων εξωκυτταριου dna για τον προσδιορισμο παραλλαγης αριθμου αντιγραφωνInfo
- Publication number
- CY1121741T1 CY1121741T1 CY20191100642T CY191100642T CY1121741T1 CY 1121741 T1 CY1121741 T1 CY 1121741T1 CY 20191100642 T CY20191100642 T CY 20191100642T CY 191100642 T CY191100642 T CY 191100642T CY 1121741 T1 CY1121741 T1 CY 1121741T1
- Authority
- CY
- Cyprus
- Prior art keywords
- copy number
- methods
- number variation
- fragment size
- extracellular dna
- Prior art date
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- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
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- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
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- C12Q1/6869—Methods for sequencing
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- G06F18/24323—Tree-organised classifiers
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- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
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- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
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- C12Q2537/00—Reactions characterised by the reaction format or use of a specific feature
- C12Q2537/10—Reactions characterised by the reaction format or use of a specific feature the purpose or use of
- C12Q2537/16—Assays for determining copy number or wherein the copy number is of special importance
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- C12Q2537/00—Reactions characterised by the reaction format or use of a specific feature
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- C12Q2600/00—Oligonucleotides characterized by their use
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Abstract
Αποκαλύπτονται μέθοδοι για τον προσδιορισμό της παραλλαγής αριθμού αντιγράφων (CNV) που είναι γνωστό ή υπάρχει υποψία ότι σχετίζεται με ένα πλήθος ιατρικών παθήσεων. Σε κάποιες υλοποιήσεις, παρέχονται μέθοδοι για τον προσδιορισμό της παραλλαγής αριθμού αντιγράφων εμβρύων με τη χρήση μητρικών δειγμάτων που περιέχουν μητρικό και εμβρυϊκό εξωκυττάριο DNA. Σε κάποιες υλοποιήσεις, παρέχονται μέθοδοι για τον προσιορισμό CNV που είναι γνωστό ή υπάρχει υποψία ότι σχετίζονται με ένα πλήθος ιατρικών παθήσεων. Κάποιες υλοποιήσεις που αποκαλύπτονται στο παρόν παρέχουν μεθόδους για τη βελτίωση της ευαισθησίας και/ή της εκλεκτικότητας της ανάλυσης δεδομένων αλληλουχίας διά του υπολογισμού μίας παραμέτρου μεγέθους θραύσματος. Σε κάποιες εφαρμογές, πληροφορίες για θραύσματα διαφορετικών μεγεθών χρησιμοποιούνται για τον υπολογισμό παραλλαγών αριθμού αντιγράφων. Σε κάποιες υλοποιήσεις, ένα ή περισσότερα στατιστικά t που λαμβάνονται από πληροφορίες κάλυψης της αλληλουχίας ενδιαφέροντος χρησιμοποιούνται για τον υπολογισμό παραλλαγών αριθμού αντιγράφων. Σε κάποιες εφαρμογές, μία ή περισσότερες εκτιμήσεις για το εμβρυϊκό κλάσμα συνδυάζονται με ένα ή περισσότερα στατιστικά t για τον προσδιορισμό παραλλαγών αριθμού αντιγράφων.
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
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US201662290891P | 2016-02-03 | 2016-02-03 |
Publications (1)
Publication Number | Publication Date |
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CY1121741T1 true CY1121741T1 (el) | 2020-07-31 |
Family
ID=57583028
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CY20191100642T CY1121741T1 (el) | 2016-02-03 | 2019-06-20 | Χρηση του μεγεθους θραυσματων εξωκυτταριου dna για τον προσδιορισμο παραλλαγης αριθμου αντιγραφων |
Country Status (20)
Country | Link |
---|---|
US (3) | US10095831B2 (el) |
EP (2) | EP3202915B1 (el) |
KR (2) | KR102049191B1 (el) |
CN (2) | CN113096726B (el) |
AR (1) | AR107192A1 (el) |
AU (2) | AU2016391100B2 (el) |
BR (1) | BR112018015913B1 (el) |
CA (1) | CA3013572C (el) |
CY (1) | CY1121741T1 (el) |
DK (1) | DK3202915T3 (el) |
EA (2) | EA202090277A3 (el) |
IL (2) | IL260938B (el) |
MA (2) | MA44822A (el) |
NZ (1) | NZ745637A (el) |
SA (1) | SA518392138B1 (el) |
SG (1) | SG11201806595UA (el) |
TW (2) | TWI661049B (el) |
UA (1) | UA126898C2 (el) |
WO (1) | WO2017136059A1 (el) |
ZA (1) | ZA201805753B (el) |
Families Citing this family (57)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN111254500B (zh) | 2012-12-10 | 2024-01-23 | 分析生物科学有限公司 | 靶向基因组分析的方法 |
AU2014340239B2 (en) | 2013-10-21 | 2019-11-28 | Verinata Health, Inc. | Method for improving the sensitivity of detection in determining copy number variations |
CA2950596C (en) | 2014-05-30 | 2023-10-31 | Verinata Health, Inc. | Detecting fetal sub-chromosomal aneuploidies and copy number variations |
US20160053301A1 (en) | 2014-08-22 | 2016-02-25 | Clearfork Bioscience, Inc. | Methods for quantitative genetic analysis of cell free dna |
WO2016094853A1 (en) | 2014-12-12 | 2016-06-16 | Verinata Health, Inc. | Using cell-free dna fragment size to determine copy number variations |
CA3004435A1 (en) | 2015-11-11 | 2017-05-18 | Resolution Bioscience, Inc. | High efficiency construction of dna libraries |
US10095831B2 (en) * | 2016-02-03 | 2018-10-09 | Verinata Health, Inc. | Using cell-free DNA fragment size to determine copy number variations |
US11514289B1 (en) * | 2016-03-09 | 2022-11-29 | Freenome Holdings, Inc. | Generating machine learning models using genetic data |
WO2018031739A1 (en) * | 2016-08-10 | 2018-02-15 | New York Genome Center, Inc. | Ultra-low coverage genome sequencing and uses thereof |
CN109804080B (zh) | 2016-08-25 | 2023-07-21 | 分析生物科学有限公司 | 用于检测dna样品中基因组拷贝变化的方法 |
US12100483B2 (en) | 2016-12-22 | 2024-09-24 | Grail, Llc | Base coverage normalization and use thereof in detecting copy number variation |
EP4421489A3 (en) * | 2017-01-25 | 2024-11-13 | The Chinese University of Hong Kong | Diagnostic applications using nucleic acid fragments |
US11342047B2 (en) | 2017-04-21 | 2022-05-24 | Illumina, Inc. | Using cell-free DNA fragment size to detect tumor-associated variant |
EP4234723A3 (en) | 2017-07-26 | 2023-09-20 | The Chinese University Of Hong Kong | Enhancement of cancer screening using cell-free viral nucleic acids |
US20200299677A1 (en) | 2017-10-27 | 2020-09-24 | Juno Diagnostics, Inc. | Devices, systems and methods for ultra-low volume liquid biopsy |
GB201718620D0 (en) * | 2017-11-10 | 2017-12-27 | Premaitha Ltd | Method of detecting a fetal chromosomal abnormality |
KR20210009299A (ko) * | 2018-02-27 | 2021-01-26 | 코넬 유니버시티 | 게놈-와이드 통합을 통한 순환 종양 dna의 초민감 검출 |
WO2019178289A1 (en) * | 2018-03-13 | 2019-09-19 | Grail, Inc. | Method and system for selecting, managing, and analyzing data of high dimensionality |
US12154661B2 (en) | 2018-03-22 | 2024-11-26 | The Regents Of The University Of Michigan | Method and apparatus for analysis of chromatin interaction data |
EP3773534A4 (en) * | 2018-03-30 | 2021-12-29 | Juno Diagnostics, Inc. | Deep learning-based methods, devices, and systems for prenatal testing |
US12188012B2 (en) | 2018-04-02 | 2025-01-07 | Illumina, Inc. | Compositions and methods for making controls for sequence-based genetic testing |
WO2019200404A2 (en) * | 2018-04-13 | 2019-10-17 | Grail, Inc. | Multi-assay prediction model for cancer detection |
TWI822789B (zh) | 2018-06-01 | 2023-11-21 | 美商格瑞爾有限責任公司 | 用於資料分類之卷積神經網路系統及方法 |
WO2020006183A1 (en) * | 2018-06-28 | 2020-01-02 | 10X Genomics, Inc. | Systems and methods for visualization of single-cell resolution characteristics |
JP6891150B2 (ja) * | 2018-08-31 | 2021-06-18 | シスメックス株式会社 | 解析方法、情報処理装置、遺伝子解析システム、プログラム、記録媒体 |
US11488716B2 (en) * | 2018-10-09 | 2022-11-01 | Ferrum Health, Inc. | Method for configuring multiple machine learning classifiers |
US11610150B2 (en) | 2018-10-09 | 2023-03-21 | Ferrum Health, Inc. | Method for computing performance in multiple machine learning classifiers |
US11581062B2 (en) | 2018-12-10 | 2023-02-14 | Grail, Llc | Systems and methods for classifying patients with respect to multiple cancer classes |
CN113454218A (zh) * | 2018-12-20 | 2021-09-28 | 夸登特健康公司 | 用于改进核酸分子的回收的方法、组合物和系统 |
CN113195741A (zh) * | 2018-12-21 | 2021-07-30 | 豪夫迈·罗氏有限公司 | 从循环核酸中鉴定全基因组序列数据中的全局序列特征 |
KR102287096B1 (ko) * | 2019-01-04 | 2021-08-09 | 테라젠지놈케어 주식회사 | 모체 시료 중 태아 분획을 결정하는 방법 |
US12260935B2 (en) | 2019-06-03 | 2025-03-25 | Illumina, Inc. | Limit of detection based quality control metric |
CN110373477B (zh) * | 2019-07-23 | 2021-05-07 | 华中农业大学 | 克隆自cnv片段的与猪耳形性状相关的分子标记 |
CN110570902B (zh) * | 2019-08-27 | 2023-05-23 | 深圳百诺精准医疗科技有限公司 | 一种拷贝数变异分析方法、系统及计算机可读存储介质 |
EP4035161A1 (en) | 2019-09-23 | 2022-08-03 | Grail, LLC | Systems and methods for diagnosing a disease condition using on-target and off-target sequencing data |
CN115298324A (zh) * | 2019-12-18 | 2022-11-04 | 香港中文大学 | 游离dna断裂和核酸酶 |
CN111028890B (zh) * | 2019-12-31 | 2020-09-11 | 东莞博奥木华基因科技有限公司 | 一种基于run间矫正的CNV检测方法 |
CN111210873B (zh) * | 2020-01-14 | 2023-03-28 | 西安交通大学 | 基于外显子测序数据的拷贝数变异检测方法及系统、终端和存储介质 |
AU2021216616B2 (en) * | 2020-02-05 | 2023-04-20 | The Chinese University Of Hong Kong | Molecular analyses using long cell-free fragments in pregnancy |
CN111477275B (zh) * | 2020-04-02 | 2020-12-25 | 上海之江生物科技股份有限公司 | 微生物目标片段中多拷贝区域的识别方法、装置及应用 |
CN111411144B (zh) * | 2020-04-21 | 2023-12-22 | 深圳华大因源医药科技有限公司 | 一种用于血流感染病原诊断的血浆游离dna标志物 |
WO2021219114A1 (zh) * | 2020-04-30 | 2021-11-04 | 深圳市真迈生物科技有限公司 | 测序方法及其分析方法和系统、计算机可读存储介质和电子设备 |
KR20220074088A (ko) * | 2020-11-27 | 2022-06-03 | 주식회사 지씨지놈 | 인공지능 기반 암 진단 및 암 종 예측방법 |
AU2021391422A1 (en) * | 2020-12-02 | 2022-11-03 | Illumina Software, Inc. | System and method for detection of genetic alterations |
CN112766428B (zh) * | 2021-04-08 | 2021-07-02 | 臻和(北京)生物科技有限公司 | 肿瘤分子分型方法及装置、终端设备及可读存储介质 |
CN113270138B (zh) * | 2021-04-13 | 2023-09-22 | 杭州博圣医学检验实验室有限公司 | 基于生物信息学富集胎儿游离dna用于拷贝数变异的分析方法 |
CN113889187B (zh) * | 2021-09-24 | 2022-12-06 | 上海仁东医学检验所有限公司 | 单样本等位基因拷贝数变异检测方法、探针组和试剂盒 |
JP2024538724A (ja) * | 2021-10-08 | 2024-10-23 | ファウンデーション・メディシン・インコーポレイテッド | コピー数変化の自動呼び出しのための方法及びシステム |
KR20230114952A (ko) * | 2022-01-26 | 2023-08-02 | 권창혁 | 암 판별 장치 및 암 판별 방법 |
EP4500534A1 (en) * | 2022-03-31 | 2025-02-05 | Illumina, Inc. | Copy number variant calling for lpa kiv-2 repeat |
CN114464269B (zh) * | 2022-04-07 | 2022-07-08 | 国家超级计算天津中心 | 一种虚拟药物生成方法、装置及计算机设备 |
AU2023329418A1 (en) * | 2022-08-26 | 2025-03-06 | Fred Hutchinson Cancer Center | Cell-free dna sequence data analysis techniques for estimating fetal fraction and predicting preeclampsia |
CN119630812A (zh) | 2023-02-17 | 2025-03-14 | 因美纳有限公司 | 作为先兆子痫的生物标志物的细胞游离dna信号 |
US20240392363A1 (en) * | 2023-05-26 | 2024-11-28 | Illumina, Inc. | Methods for discriminating between fetal and maternal events in non-invasive prenatal test samples |
KR20240174893A (ko) * | 2023-06-08 | 2024-12-18 | 지놈케어 주식회사 | 태아 분획을 증가시키는 방법 |
CN116597893B (zh) * | 2023-06-14 | 2023-12-15 | 北京金匙医学检验实验室有限公司 | 预测耐药基因-病原微生物归属的方法 |
CN117116344B (zh) * | 2023-10-25 | 2024-07-19 | 北京大学第三医院(北京大学第三临床医学院) | 一种单细胞水平pmp22重复变异的检测系统和方法 |
Family Cites Families (46)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US20100216153A1 (en) | 2004-02-27 | 2010-08-26 | Helicos Biosciences Corporation | Methods for detecting fetal nucleic acids and diagnosing fetal abnormalities |
US7601499B2 (en) | 2005-06-06 | 2009-10-13 | 454 Life Sciences Corporation | Paired end sequencing |
CA2668818C (en) | 2006-10-10 | 2018-06-26 | Xenomics, Inc. | Compositions, methods and kits for isolating nucleic acids from body fluids using anion exchange media |
US8262900B2 (en) | 2006-12-14 | 2012-09-11 | Life Technologies Corporation | Methods and apparatus for measuring analytes using large scale FET arrays |
KR102443163B1 (ko) | 2007-07-23 | 2022-09-14 | 더 차이니즈 유니버시티 오브 홍콩 | 핵산 서열 불균형의 결정 |
CN101889074A (zh) | 2007-10-04 | 2010-11-17 | 哈尔西恩莫尔丘勒公司 | 采用电子显微镜对核酸聚合物测序 |
WO2009051842A2 (en) | 2007-10-18 | 2009-04-23 | The Johns Hopkins University | Detection of cancer by measuring genomic copy number and strand length in cell-free dna |
CA2704118A1 (en) | 2007-11-01 | 2009-05-07 | The Hospital For Sick Children | Method of determining risk for cancer |
EP3378951B1 (en) | 2008-09-20 | 2020-05-13 | The Board of Trustees of the Leland Stanford Junior University | Noninvasive diagnosis of aneuploidy by sequencing |
CN102791881B (zh) | 2009-11-06 | 2017-08-08 | 香港中文大学 | 基于大小的基因组分析 |
US9323888B2 (en) * | 2010-01-19 | 2016-04-26 | Verinata Health, Inc. | Detecting and classifying copy number variation |
US9260745B2 (en) | 2010-01-19 | 2016-02-16 | Verinata Health, Inc. | Detecting and classifying copy number variation |
WO2011091063A1 (en) * | 2010-01-19 | 2011-07-28 | Verinata Health, Inc. | Partition defined detection methods |
US20120046877A1 (en) | 2010-07-06 | 2012-02-23 | Life Technologies Corporation | Systems and methods to detect copy number variation |
US9029103B2 (en) | 2010-08-27 | 2015-05-12 | Illumina Cambridge Limited | Methods for sequencing polynucleotides |
US8725422B2 (en) * | 2010-10-13 | 2014-05-13 | Complete Genomics, Inc. | Methods for estimating genome-wide copy number variations |
BR112013013421A2 (pt) | 2010-11-30 | 2016-09-06 | Univ Hong Kong Chinese | método de análise de uma amostra biológica de um organismo, método de determinação de um progresso de aberrações cromossômicas em um organismo, meios de armazenamento de memória, e, sistema de computador |
US9411937B2 (en) | 2011-04-15 | 2016-08-09 | Verinata Health, Inc. | Detecting and classifying copy number variation |
RS55518B1 (sr) | 2011-05-31 | 2017-05-31 | Berry Genomics Co Ltd | Uređaj za detektovanje broja kopija fetalnih hromozoma ili hromozoma tumorske ćelije |
SG191757A1 (en) | 2011-06-29 | 2013-08-30 | Bgi Health Service Co Ltd | Noninvasive detection of fetal genetic abnormality |
JP6161607B2 (ja) | 2011-07-26 | 2017-07-12 | ベリナタ ヘルス インコーポレイテッド | サンプルにおける異なる異数性の有無を決定する方法 |
ES2886508T3 (es) | 2011-10-06 | 2021-12-20 | Sequenom Inc | Métodos y procedimientos para la evaluación no invasiva de variaciones genéticas |
US9367663B2 (en) | 2011-10-06 | 2016-06-14 | Sequenom, Inc. | Methods and processes for non-invasive assessment of genetic variations |
US20140370504A1 (en) | 2011-12-31 | 2014-12-18 | Bgi Diagnosis Co., Ltd. | Method for detecting genetic variation |
CA2861856C (en) | 2012-01-20 | 2020-06-02 | Sequenom, Inc. | Diagnostic processes that factor experimental conditions |
US9892230B2 (en) | 2012-03-08 | 2018-02-13 | The Chinese University Of Hong Kong | Size-based analysis of fetal or tumor DNA fraction in plasma |
CA2866324C (en) | 2012-03-13 | 2019-01-15 | The Chinese University Of Hong Kong | Methods for analyzing massively parallel sequencing data for noninvasive prenatal diagnosis |
CN103374518B (zh) * | 2012-04-12 | 2018-03-27 | 维里纳塔健康公司 | 拷贝数变异的检测和分类 |
US10504613B2 (en) | 2012-12-20 | 2019-12-10 | Sequenom, Inc. | Methods and processes for non-invasive assessment of genetic variations |
US9920361B2 (en) | 2012-05-21 | 2018-03-20 | Sequenom, Inc. | Methods and compositions for analyzing nucleic acid |
US11261494B2 (en) | 2012-06-21 | 2022-03-01 | The Chinese University Of Hong Kong | Method of measuring a fractional concentration of tumor DNA |
WO2014014497A1 (en) | 2012-07-20 | 2014-01-23 | Verinata Health, Inc. | Detecting and classifying copy number variation in a cancer genome |
DK2893040T5 (en) * | 2012-09-04 | 2019-03-18 | Guardant Health Inc | METHODS TO DETECT RARE MUTATIONS AND CAPITAL VARIATION |
US20140066317A1 (en) * | 2012-09-04 | 2014-03-06 | Guardant Health, Inc. | Systems and methods to detect rare mutations and copy number variation |
US10233495B2 (en) | 2012-09-27 | 2019-03-19 | The Hospital For Sick Children | Methods and compositions for screening and treating developmental disorders |
CN114574581A (zh) | 2013-03-15 | 2022-06-03 | 夸登特健康公司 | 检测稀有突变和拷贝数变异的系统和方法 |
US20140371078A1 (en) * | 2013-06-17 | 2014-12-18 | Verinata Health, Inc. | Method for determining copy number variations in sex chromosomes |
MX2015016911A (es) | 2013-06-21 | 2016-06-21 | Sequenom Inc | Metodos y procesos para evaluacion no invasiva de variaciones geneticas. |
AU2014340239B2 (en) | 2013-10-21 | 2019-11-28 | Verinata Health, Inc. | Method for improving the sensitivity of detection in determining copy number variations |
US10415083B2 (en) | 2013-10-28 | 2019-09-17 | The Translational Genomics Research Institute | Long insert-based whole genome sequencing |
CA2950596C (en) | 2014-05-30 | 2023-10-31 | Verinata Health, Inc. | Detecting fetal sub-chromosomal aneuploidies and copy number variations |
WO2016094853A1 (en) | 2014-12-12 | 2016-06-16 | Verinata Health, Inc. | Using cell-free dna fragment size to determine copy number variations |
US10364467B2 (en) | 2015-01-13 | 2019-07-30 | The Chinese University Of Hong Kong | Using size and number aberrations in plasma DNA for detecting cancer |
WO2016134452A1 (en) | 2015-02-26 | 2016-09-01 | Titan Medical Inc. | Method and apparatus for providing access for a surgical procedure |
US10095831B2 (en) | 2016-02-03 | 2018-10-09 | Verinata Health, Inc. | Using cell-free DNA fragment size to determine copy number variations |
US11342047B2 (en) | 2017-04-21 | 2022-05-24 | Illumina, Inc. | Using cell-free DNA fragment size to detect tumor-associated variant |
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