Amplicon sequencing analysis workflow using DADA2 and QIIME2
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Updated
Aug 6, 2024 - Nextflow
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Quickly search, compare, and analyze genomic and metagenomic data sets.
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Accurate metagenomic profiling && Fast large-scale sequence/genome searching
TAXnomic Profile Aggregation and STAndardisation
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional.
Parallelised and automated construction of metagenomic classifier databases of different tools
Fast and space-efficient taxonomic classification of long reads
mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
Metabarcoding analysis pipeline, using DADA2 and qiime2
A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG
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