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734 public repositories
matching this topic...
A DSL for data-driven computational pipelines
Updated
Aug 25, 2024
Groovy
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Updated
Aug 26, 2024
Nextflow
A curated list of nextflow based pipelines
A flexible pipeline for complete analysis of bacterial genomes
Updated
Aug 25, 2024
Nextflow
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Updated
Aug 23, 2024
Nextflow
A curated collection of Nextflow implementation patterns
Updated
Nov 21, 2023
Nextflow
Repository to host tool-specific module files for the Nextflow DSL2 community!
Updated
Aug 26, 2024
Nextflow
FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦
Updated
May 11, 2020
Python
GCP for Bioinformatics Researchers
Updated
Aug 22, 2024
Jupyter Notebook
Python package with helper tools for the nf-core community.
Updated
Aug 26, 2024
Python
Assembly and binning of metagenomes
Updated
Aug 22, 2024
Nextflow
Lint, format and auto-fix your Groovy / Jenkinsfile / Gradle files using command line
Updated
Aug 26, 2024
JavaScript
A single-cell RNAseq pipeline for 10X genomics data
Updated
Aug 21, 2024
Nextflow
ChIP-seq peak-calling, QC and differential analysis pipeline.
Updated
Aug 9, 2024
Nextflow
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Updated
Aug 6, 2024
Nextflow
ATAC-seq peak-calling and QC analysis pipeline
Updated
Jul 15, 2024
Nextflow
Nanopore demultiplexing, QC and alignment pipeline
Updated
Aug 26, 2024
Nextflow
Updated
Feb 2, 2023
Groovy
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Updated
Jun 28, 2024
Nextflow
Simple test framework for Nextflow pipelines
Updated
Aug 14, 2024
Java
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