rna-seq
Here are 1,205 public repositories matching this topic...
-
Updated
Feb 16, 2025 - Jupyter Notebook
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
-
Updated
May 29, 2024 - C++
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
-
Updated
Feb 11, 2025 - Python
NicheNet: predict active ligand-target links between interacting cells
-
Updated
Sep 5, 2024 - R
A repository for setting up a RNAseq workflow
-
Updated
Apr 10, 2017 - R
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
-
Updated
Feb 2, 2025
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
-
Updated
Dec 25, 2024 - Kotlin
Table of software for the analysis of single-cell RNA-seq data.
-
Updated
Feb 16, 2025 - R
-
Updated
Oct 1, 2024 - R
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
-
Updated
Jul 12, 2024 - R
minimal example implementations for bioinformatics workflow managers
-
Updated
Oct 27, 2021 - Python
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
-
Updated
Feb 10, 2025 - Nextflow
Fast and accurate gene fusion detection from RNA-Seq data
-
Updated
Nov 1, 2024 - C++
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
-
Updated
May 8, 2023 - R
Improve this page
Add a description, image, and links to the rna-seq topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the rna-seq topic, visit your repo's landing page and select "manage topics."