Metabarcoding analysis pipeline, using DADA2 and qiime2

A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG

Parallelised and automated construction of metagenomic classifier databases of different tools

Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform specie level taxonomic assignments and functional analysis.

mSWEEP High-resolution sweep metagenomics using fast probabilistic inference

A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.

Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes

TAXnomic Profile Aggregation and STAndardisation

Fast and space-efficient taxonomic classification of long reads

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Accurate metagenomic profiling && Fast large-scale sequence/genome searching

Amplicon sequencing analysis workflow using DADA2 and QIIME2

Quickly search, compare, and analyze genomic and metagenomic data sets.