ABSTRACT Innovative population genetics software was used to evaluate DNA fingerprint and sequence data from individual Coptotermes formosanus (Rhinotermitidae) workers collected from a point-source introduction in Atlanta, GA. We discuss... more
ABSTRACT Innovative population genetics software was used to evaluate DNA fingerprint and sequence data from individual Coptotermes formosanus (Rhinotermitidae) workers collected from a point-source introduction in Atlanta, GA. We discuss the insights into population structure gleaned from using multiple DNA markers as well as point out caveats inherent in the use of each individual DNA marker.
Research Interests: Zoology and Sociobiology
Research Interests:
Research Interests: Zoology and Sociobiology
Research Interests:
Spigelia marilandica (L.) L., an herbaceous perennial native to the Southeastern United States, is used as an ornamental and for pharmacological purposes. Plant conservationists and breeders, therefore, are interested in determining its... more
Spigelia marilandica (L.) L., an herbaceous perennial native to the Southeastern United States, is used as an ornamental and for pharmacological purposes. Plant conservationists and breeders, therefore, are interested in determining its population genetic diversity. Amplified fragment length polymorphism (ALFP) fingerprints, which require upwards of 100ng of DNA, can effectively measure this diversity across the species’ range. Since DNA concentration is linked to AFLP results, an optimum protocol was developed to extract DNA from leaf material of wild-growing plants. Young leaf material was collected from 10 populations throughout Georgia, Florida, and South Carolina and stored at -80°C prior to DNA extraction. A modified Omega Bio-Tek protocol was used to extract DNA. A second protocol, which added 0.9 µL carrier RNA in the column step, was used in an attempt to increase DNA yields. Yields of DNA with and without the addition of carrier RNA were checked for quantity and quality us...
Social insects live within, and are subject to, the confines of time and space. For the past four years we have studied black carpenter ant (Camponotus pennsylvanicus) colonies in Georgia, USA from temporal and spatial perspectives using... more
Social insects live within, and are subject to, the confines of time and space. For the past four years we have studied black carpenter ant (Camponotus pennsylvanicus) colonies in Georgia, USA from temporal and spatial perspectives using maternal and nuclear DNA markers. We used molecular markers to examine population structure from the standpoint of kinship, gene flow, maternity and physical topology. We report our observations and discuss implications of these observations for black carpenter ant dispersal, treatment and control.
In October 2009 the first species of the family Plataspidae, Megacopta cribraria, in the Western hemisphere was discovered in Georgia, USA feeding on kudzu vine. In January 2010 it was confirmed that an obligate bacterial endosymbiont,... more
In October 2009 the first species of the family Plataspidae, Megacopta cribraria, in the Western hemisphere was discovered in Georgia, USA feeding on kudzu vine. In January 2010 it was confirmed that an obligate bacterial endosymbiont, which has been implicated in the survival and adaptation of the insect, was confirmed from DNA sequence. Commonly known in Asia as the bean, lablab bean or field bean bug, its large populations continue to quickly spread to contiguous counties in Georgia. We report on the genetic data and the implications of these data for adaptation and dispersal of this bug.
Innovative population genetics software was used to evaluate DNA fingerprint and sequence data from individual Coptotermes formosanus (Rhinotermitidae) workers collected from a point-source introduction in Atlanta, GA. We discuss the... more
Innovative population genetics software was used to evaluate DNA fingerprint and sequence data from individual Coptotermes formosanus (Rhinotermitidae) workers collected from a point-source introduction in Atlanta, GA. We discuss the insights into population structure gleaned from using multiple DNA markers as well as point out caveats inherent in the use of each individual DNA marker.
Research Interests:
Research Interests:
Research Interests:
Research Interests:
Compensatory base changes (CBCs) in the ribosomal RNA (rRNA) internal transcribed spacer 2 (ITS2) sec- ondary structures have been used to successfully verify the taxonomy of closely related species. CBCs have never been used to... more
Compensatory base changes (CBCs) in the ribosomal RNA (rRNA) internal transcribed spacer 2 (ITS2) sec- ondary structures have been used to successfully verify the taxonomy of closely related species. CBCs have never been used to distinguish morphologically indistinct species. Under the hypothesis that CBCs will differentiate species in higher eukaryotes, novel software for CBC analysis was applied to morpho- logically
Research Interests:
MACRAE and ANDERSON observed a large frequency change of mitochondrial DNA (mtDNA) haplotypes in a population initiated with two allopatric strains of Drosophila pseudoobscura, BogER from Colombia and AH162 from California. They concluded... more
MACRAE and ANDERSON observed a large frequency change of mitochondrial DNA (mtDNA) haplotypes in a population initiated with two allopatric strains of Drosophila pseudoobscura, BogER from Colombia and AH162 from California. They concluded that mtDNA haplotypes in D. pseudoobscura are not always selectively neutral. NIGRO and PROUT suggested, however, that a maternally transmitted incompatibility system, similar to the one they observed in two strains of D. simulans from Italy, could account for the observed mtDNA frequency changes. SINGH and HALE postulated that a mating preference between the strains BogER and AH162 in MACRAF and ANDERSON's experiment, in the form of negative assortative mating, could also account for the mtDNA frequency changes. We report two experiments designed to test the hypotheses: that a maternally transmitted cytoplasmic incompatibility system exists between D. pseudoobscura strains BogER and AH162; and, that BogER females mate preferentially with AH162...
Research Interests:
Species-specific homogenization of the ITS2 region located between the 5.8S rRNA and 28S rRNA may function in the process of ribosomal biogenesis. Ribosomal DNA is necessary for translation. ITS2 homogenization may, therefore, facilitate... more
Species-specific homogenization of the ITS2 region located between the 5.8S rRNA and 28S rRNA may function in the process of ribosomal biogenesis. Ribosomal DNA is necessary for translation. ITS2 homogenization may, therefore, facilitate intraspecific compatibility with other translational molecular components. Furthermore, a biogenetic process that depends on sequence and structure conservation may also be a strong species-specific DNA marker which can be used to validate morphologically difficult to distinguish adult insects.
We discuss how the use of multiple DNA markers, morphological characters and population genetics software illuminated the systematics of the genus Altica (Coleoptera: Chrysomelidae). We also argue the necessity of a one-to-one correlation... more
We discuss how the use of multiple DNA markers, morphological characters and population genetics software illuminated the systematics of the genus Altica (Coleoptera: Chrysomelidae). We also argue the necessity of a one-to-one correlation between DNA and morphological characters for each species.
Research Interests: Risk assessment, Multidisciplinary, Humans, Escherichia coli, Applied, and 16 moreAnimals, Applied Environmental Microbiology, Polymerase Chain Reaction, Phenotype, Hepatitis a Virus, Human health, Genotype, Feces, Health risk, Economic Loss, Risk Assessment, Microbial Source Tracking, Bacteroides Fragilis, Microbiological Quality, Bifidobacterium, and Enterovirus
Virulence-factor activity relationship (VFAR) is a concept that was developed as a way to relate the architectural and biochemical components of a microorganism to its potential to cause human disease. Development of these relationships... more
Virulence-factor activity relationship (VFAR) is a concept that was developed as a way to relate the architectural and biochemical components of a microorganism to its potential to cause human disease. Development of these relationships requires specialised bioinformatics databases that do not exist at present. A pilot-scale VFAR database was designed for three different waterborne organisms: Escherichia coli, Norovirus and Cryptosporidium, to evaluate VFAR relationships. For the web-based database, each organism has separate pages containing virulence genes, occurrence genes, primer sets and probes, taxonomy, outbreaks, and serotype/species/genogroup/genotype. As the database continues to grow, it will be possible to relate the occurrence and prevalence of certain genes in various microorganisms to outbreak data and, subsequently, to establish the utility of using a combination of specific genes as markers of virulence and in establishing virulence-factor activity relationships (VF...
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The Great Lakes are a source of water for municipal, agricultural and industrial use, and support significant recreation, commercial and sport fishing industries. Every year millions of people visit the 500 plus recreational beaches in... more
The Great Lakes are a source of water for municipal, agricultural and industrial use, and support significant recreation, commercial and sport fishing industries. Every year millions of people visit the 500 plus recreational beaches in the Great Lakes. An increasing public health risk has been suggested with increased evidence of fecal contamination at the shoreline. To investigate the transport and
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ABSTRACT The use of Gravel Bed Hydroponic (GBH) constructed wetlands for wastewater treatment and reuse in semi-arid climates has been evaluated in Egypt with respect to the removal of parasite eggs from domestic wastewaters. Influent and... more
ABSTRACT The use of Gravel Bed Hydroponic (GBH) constructed wetlands for wastewater treatment and reuse in semi-arid climates has been evaluated in Egypt with respect to the removal of parasite eggs from domestic wastewaters. Influent and effluent from established 100m GBH reed beds receiving partially treated wastewater, were analysed to establish daily parasite loading rates and removal performance of the system under normal operating conditions (201/min; intermittent 12h on/off flow regime.) The system was then challenged with high numbers of parasite eggs (Ascaris sp., Hymenolepis sp. and Toxocara sp.) equivalent to an influent of 100-500 eggs/l and a daily loading rate of 1.0-7.2 x 10(6), representing up to a 110-fold increase over typical mean daily loading rates. Wastewater samples were collected from the inlet, at varying distances along the 100m bed profile, and the outlet. Sampling was also carried out at varying time intervals during the flow regime to determine the spatial and temporal removal of eggs along the bed. In 100m long planted beds, there was significant removal of all selected parasite eggs with the majority being removed within the first 25m. No eggs were detected in the final effluent. These studies demonstrate that GBH wetlands have a capacity for efficient removal of parasite eggs and thus provide a reliable, low cost technology for treating effluent compliant with health related objectives for the treatment of wastewater intended for agricultural reuse.
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Research Interests: Microbiology, Geography, Assessment, Water, Water quality, and 37 moreModeling, Forecasting, Evaluation, Membrane Proteins, Health, Public Health, Risk assessment, Multidisciplinary, Cell Culture, Great Lakes Region, Quantitative Microbial Risk Assessment, Seasonality, Humans, Models, Escherichia coli, RECREATION, Bacteria, Viruses, Michigan, Wind, Water Temperature, Predictive models, Prediction Model, Real Time, Quantitative risk assessment, Sewage, Waste Water, Viral Infection, Fresh water, Real Time system, Enterococcus faecalis, Biological markers, Water quality monitoring, Water Quality, Risk Assessment, Water Microbiology, and Wind Speed
Research Interests: Evolutionary Biology, Genetics, Zoology, Geography, Algorithms, and 16 morePhylogenetics, Australia, Invasive Species, Puerto Rico, Phylogeny, Mitochondrial DNA, Maximum Likelihood, Animals, Florida, Animal migration, Molecular Phylogenetics and Evolution, Isoptera, Ohio, Concerted Evolution, Maximum Parsimony, and Subterranean Termite
Research Interests: Evolutionary Biology, Genetics, Zoology, Gene Flow, Population Genetics, and 16 moreMolecular Evolution, Population Dynamics, United Kingdom, Phylogeny, mtDNA, Mitochondrial DNA, United States, Animals, Molecular Phylogenetics and Evolution, Isoptera, Molecular phylogenetics, Cell nucleus, North American, DNA sequence, Subterranean Termite, and Molecular Sequence Data
Research Interests:
Research Interests:
Previous work showed that pericalcarine cortical volume loss is evident early after presentation with acute clinically isolated optic neuritis (ON). The aims of this study were: (1) to determine whether pericalcarine atrophy in patients... more
Previous work showed that pericalcarine cortical volume loss is evident early after presentation with acute clinically isolated optic neuritis (ON). The aims of this study were: (1) to determine whether pericalcarine atrophy in patients with ON is associated with conversion to multiple sclerosis (MS); (2) to investigate whether regional atrophy preferentially affects pericalcarine cortex; and (3) to investigate potential causes of early pericalcarine atrophy using MRI. 28 patients with acute ON and 10 controls underwent structural MRI (brain and optic nerves) and were followed-up over 12 months. Associations between the development of MS, optic nerve, optic radiation and pericalcarine cortical damage measures were investigated using multiple linear regression models. Regional cortical volumetric differences between patients and controls were calculated using t tests. The development of MS at 12 months was associated with greater whole brain and optic radiation lesion loads, shorter acute optic nerve lesions and smaller pericalcarine cortical volume at baseline. Regional atrophy was not evident in other sampled cortical regions. Pericalcarine atrophy was not directly associated with whole brain lesion load, optic radiation measures or optic nerve lesion length. However, the association between pericalcarine atrophy and MS was not independent of these parameters. Reduced pericalcarine cortical volumes in patients with early clinically isolated ON were associated with the development of MS but volumes of other cortical regions were not. Hence pericalcarine cortical regions appear particularly susceptible to early damage. These findings could be explained by a combination of pathological effects to visual grey and white matter in patients with ON.
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Research Interests: Zoology, New Orleans, Georgia, Phylogeny, Mitochondrial DNA, and 12 moreAnimals, Polymerase Chain Reaction, Isoptera, Economic Entomology, Base Sequence, Ecological Applications, Southeastern United States, Economic, Cytochrome Oxidase II Gene, DNA sequence, Subterranean Termite, and Molecular Sequence Data
The erosion of contactor contacts is controlled by means of an electronic circuit. The electronic circuit controls the velocity of the moving contact through the break cycle and the instant at which the contacts part relative to ac mains... more
The erosion of contactor contacts is controlled by means of an electronic circuit. The electronic circuit controls the velocity of the moving contact through the break cycle and the instant at which the contacts part relative to ac mains voltage. The control circuit limits the current through the coil for a set period. A set of tests are carried out
Research Interests:
Three sympatric Reticulitermes species have been identified in Georgia, USA, based on morphological characters from alates and soldiers: R. flavipes, R. virginicus, and R. hageni, but species identification at individual collection sites... more
Three sympatric Reticulitermes species have been identified in Georgia, USA, based on morphological characters from alates and soldiers: R. flavipes, R. virginicus, and R. hageni, but species identification at individual collection sites is often difficult because alate production is seasonal and soldiers comprise 1–3% of the colony. We therefore set up an experiment to determine if chemical phenotypes and mtDNA
Research Interests: Genetics, Phylogenetics, Chemical Ecology, Morphology, Evolution, and 15 moreBiological Sciences, Seasonality, Environmental Sciences, Mitochondrial DNA, Identification, Haplotypes, Cytochrome c oxidase, Species identification, Morphological Characters, CHEMICAL SCIENCES, Phenotypes, Keys, Southeastern United States, Cytochrome Oxidase II Gene, and Subterranean Termite
ABSTRACT The genetic diversity of the genus Crotalaria is unknown even though many species in this genus are economically valuable. We report the first study in which polymorphic expressed sequence tag-simple sequence repeat (EST-SSR)... more
ABSTRACT The genetic diversity of the genus Crotalaria is unknown even though many species in this genus are economically valuable. We report the first study in which polymorphic expressed sequence tag-simple sequence repeat (EST-SSR) markers derived from Medicago and soybean were used to assess the genetic diversity of the Crotalaria germplasm collection. This collection consisted of 26 accessions representing 4 morphologically characterized species. Phylogenetic analysis partitioned accessions into 4 main groups generally along species lines and revealed that 2 accessions were incorrectly identified as Crotalaria juncea and Crotalaria spectabilis instead of Crotalaria retusa. Morphological re-examination confirmed that these 2 accessions were misclassified during curation or conservation and were indeed C. retusa. Some amplicons from Crotalaria were sequenced and their sequences showed a high similarity (89% sequence identity) to Medicago truncatula from which the EST-SSR primers were designed; however, the SSRs were completely deleted in Crotalaria. Highly distinguishing markers or more sequences are required to further classify accessions within C. juncea.
Research Interests:
Research Interests:
Research Interests:
Adult hematopoietic differentiation is a developmental process that employs many of the same molecular mechanisms as embryogenesis. To explore the possibility that hedgehog signaling is involved in the control of hematopoietic... more
Adult hematopoietic differentiation is a developmental process that employs many of the same molecular mechanisms as embryogenesis. To explore the possibility that hedgehog signaling is involved in the control of hematopoietic differentiation, we screened a panel of human leukemia cell lines for the expression of Patched1 and Smoothened, the receptor and coreceptor for hedgehog ligands. Expression was found in multiple cell lines, and Patched1 expression was detected in normal marrow. Induction of myeloid differentiation in cell lines downregulated expression of both genes. When normal marrow mononuclear cells were grown in semisolid medium in the presence of 10 microM cyclopamine, development of colonies of granulocytic/monocytic lineage was unaffected in terms of both number and morphology. The number of erythroid colonies, however, was significantly reduced (P < 0.01). Furthermore, hemoglobinization was substantially delayed relative to controls in those erythroid colonies that did form. Incubation of hematopoietic progenitors with Shh-N and GM-CSF resulted in increased granulocyte/monocyte colonies (P < 0.01); the increase was blocked by cyclopamine. Incubation of hematopoietic progenitors with Shh-N and stem cell factor resulted in larger erythroid colonies. These results suggest that elements of the hedgehog signaling pathway are involved in the control of hematopoietic differentiation.