MY183442A - Compositions, systems, and methods for sequencing polynucleotides using tethers anchored to polymerases adjacent to nanopores - Google Patents
Compositions, systems, and methods for sequencing polynucleotides using tethers anchored to polymerases adjacent to nanoporesInfo
- Publication number
- MY183442A MY183442A MYPI2017001670A MYPI2017001670A MY183442A MY 183442 A MY183442 A MY 183442A MY PI2017001670 A MYPI2017001670 A MY PI2017001670A MY PI2017001670 A MYPI2017001670 A MY PI2017001670A MY 183442 A MY183442 A MY 183442A
- Authority
- MY
- Malaysia
- Prior art keywords
- polynucleotide
- nanopores
- compositions
- systems
- methods
- Prior art date
Links
- 239000002157 polynucleotide Substances 0.000 title abstract 6
- 102000040430 polynucleotide Human genes 0.000 title abstract 6
- 108091033319 polynucleotide Proteins 0.000 title abstract 6
- 239000000203 mixture Substances 0.000 title abstract 2
- 238000000034 method Methods 0.000 title 1
- 238000012163 sequencing technique Methods 0.000 title 1
- 239000002773 nucleotide Substances 0.000 abstract 5
- 125000003729 nucleotide group Chemical group 0.000 abstract 5
- 230000000295 complement effect Effects 0.000 abstract 3
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6839—Triple helix formation or other higher order conformations in hybridisation assays
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/483—Physical analysis of biological material
- G01N33/487—Physical analysis of biological material of liquid biological material
- G01N33/48707—Physical analysis of biological material of liquid biological material by electrical means
- G01N33/48721—Investigating individual macromolecules, e.g. by translocation through nanopores
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/483—Physical analysis of biological material
- G01N33/487—Physical analysis of biological material of liquid biological material
- G01N33/49—Blood
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2521/00—Reaction characterised by the enzymatic activity
- C12Q2521/50—Other enzymatic activities
- C12Q2521/543—Immobilised enzyme(s)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
- C12Q2525/10—Modifications characterised by
- C12Q2525/197—Modifications characterised by incorporating a spacer/coupling moiety
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2565/00—Nucleic acid analysis characterised by mode or means of detection
- C12Q2565/60—Detection means characterised by use of a special device
- C12Q2565/607—Detection means characterised by use of a special device being a sensor, e.g. electrode
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2565/00—Nucleic acid analysis characterised by mode or means of detection
- C12Q2565/60—Detection means characterised by use of a special device
- C12Q2565/631—Detection means characterised by use of a special device being a biochannel or pore
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Organic Chemistry (AREA)
- Physics & Mathematics (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Biomedical Technology (AREA)
- Molecular Biology (AREA)
- General Health & Medical Sciences (AREA)
- Immunology (AREA)
- Biochemistry (AREA)
- Analytical Chemistry (AREA)
- Biophysics (AREA)
- General Engineering & Computer Science (AREA)
- Biotechnology (AREA)
- Microbiology (AREA)
- Genetics & Genomics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Hematology (AREA)
- Food Science & Technology (AREA)
- Urology & Nephrology (AREA)
- Pathology (AREA)
- Medicinal Chemistry (AREA)
- General Physics & Mathematics (AREA)
- Nanotechnology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Ecology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201562170563P | 2015-06-03 | 2015-06-03 | |
| PCT/US2016/035457 WO2016196755A1 (en) | 2015-06-03 | 2016-06-02 | Compositions, systems, and methods for sequencing polynucleotides using tethers anchored to polymerases adjacent to nanopores |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| MY183442A true MY183442A (en) | 2021-02-18 |
Family
ID=56134634
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| MYPI2017001670A MY183442A (en) | 2015-06-03 | 2016-06-02 | Compositions, systems, and methods for sequencing polynucleotides using tethers anchored to polymerases adjacent to nanopores |
Country Status (16)
| Country | Link |
|---|---|
| US (3) | US10648022B2 (he) |
| EP (2) | EP3303627B1 (he) |
| JP (1) | JP6595005B2 (he) |
| KR (1) | KR20180014159A (he) |
| CN (2) | CN107835858B (he) |
| AU (1) | AU2016270887C1 (he) |
| CA (1) | CA2986074A1 (he) |
| ES (1) | ES3006336T3 (he) |
| HK (1) | HK1250749A1 (he) |
| IL (3) | IL255758B (he) |
| MX (2) | MX2017015517A (he) |
| MY (1) | MY183442A (he) |
| RU (1) | RU2713396C2 (he) |
| SG (1) | SG10202107427PA (he) |
| WO (1) | WO2016196755A1 (he) |
| ZA (1) | ZA201707715B (he) |
Families Citing this family (24)
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| DK3246416T3 (da) | 2011-04-15 | 2024-09-02 | Univ Johns Hopkins | Sikkert sekventeringssystem |
| PL2912468T3 (pl) | 2012-10-29 | 2019-04-30 | Univ Johns Hopkins | Test papanicolaou pod kątem raka jajnika i endometrium |
| US11286531B2 (en) | 2015-08-11 | 2022-03-29 | The Johns Hopkins University | Assaying ovarian cyst fluid |
| CN109071212A (zh) | 2016-01-28 | 2018-12-21 | 罗斯韦尔生物技术股份有限公司 | 使用大规模分子电子传感器阵列测量分析物的方法和装置 |
| WO2017132567A1 (en) | 2016-01-28 | 2017-08-03 | Roswell Biotechnologies, Inc. | Massively parallel dna sequencing apparatus |
| EP3882616A1 (en) | 2016-02-09 | 2021-09-22 | Roswell Biotechnologies, Inc | Electronic label-free dna and genome sequencing |
| US10597767B2 (en) | 2016-02-22 | 2020-03-24 | Roswell Biotechnologies, Inc. | Nanoparticle fabrication |
| US9829456B1 (en) | 2016-07-26 | 2017-11-28 | Roswell Biotechnologies, Inc. | Method of making a multi-electrode structure usable in molecular sensing devices |
| KR102622275B1 (ko) | 2017-01-10 | 2024-01-05 | 로스웰 바이오테크놀로지스 인코포레이티드 | Dna 데이터 저장을 위한 방법들 및 시스템들 |
| CN110520517A (zh) | 2017-01-19 | 2019-11-29 | 罗斯威尔生命技术公司 | 包括二维层材料的固态测序装置 |
| US10508296B2 (en) | 2017-04-25 | 2019-12-17 | Roswell Biotechnologies, Inc. | Enzymatic circuits for molecular sensors |
| CN110546276A (zh) | 2017-04-25 | 2019-12-06 | 罗斯威尔生命技术公司 | 用于分子传感器的酶电路 |
| EP4023764A3 (en) | 2017-05-09 | 2022-09-21 | Roswell Biotechnologies, Inc. | Binding probe circuits for molecular sensors |
| CN111247428B (zh) | 2017-06-20 | 2022-08-23 | 伊鲁米纳公司 | 纳米孔测序仪 |
| US12195803B2 (en) | 2017-08-07 | 2025-01-14 | The Johns Hopkins University | Methods and materials for assessing and treating cancer |
| WO2019046589A1 (en) | 2017-08-30 | 2019-03-07 | Roswell Biotechnologies, Inc. | PROCESSIVE ENZYME MOLECULAR ELECTRONIC SENSORS FOR STORING DNA DATA |
| CA3067230A1 (en) | 2017-09-15 | 2019-03-21 | Illumina, Inc. | Tuning and calibration features of a sequence-detection system |
| EP3694990A4 (en) | 2017-10-10 | 2022-06-15 | Roswell Biotechnologies, Inc. | METHODS, APPARATUS AND SYSTEMS FOR NON-AMPLIFICATION DNA DATA STORAGE |
| KR102508271B1 (ko) * | 2018-04-13 | 2023-03-08 | 에프. 호프만-라 로슈 아게 | 피분석물의 검출 및 분석을 위한 방법 및 조성물 |
| WO2020113581A1 (zh) * | 2018-12-07 | 2020-06-11 | 深圳华大生命科学研究院 | 纳米孔测序方法 |
| AU2021269556A1 (en) * | 2020-05-11 | 2022-10-27 | Illumina, Inc. | Devices including particles coupled to electrodes, and methods of making and using the same |
| AU2022349615A1 (en) * | 2021-09-22 | 2024-01-18 | Illumina, Inc. | Sequencing polynucleotides using nanopores |
| WO2024205413A1 (en) * | 2023-03-30 | 2024-10-03 | Rijksuniversiteit Groningen | Large conical nanopores and uses thereof in analyte sensing |
| WO2025006749A1 (en) * | 2023-06-30 | 2025-01-02 | Illumina, Inc. | Using apertures to capture polynucleotides on particles |
Family Cites Families (37)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP0450060A1 (en) | 1989-10-26 | 1991-10-09 | Sri International | Dna sequencing |
| US5795782A (en) | 1995-03-17 | 1998-08-18 | President & Fellows Of Harvard College | Characterization of individual polymer molecules based on monomer-interface interactions |
| AU2001282881B2 (en) | 2000-07-07 | 2007-06-14 | Visigen Biotechnologies, Inc. | Real-time sequence determination |
| AU2002227156A1 (en) | 2000-12-01 | 2002-06-11 | Visigen Biotechnologies, Inc. | Enzymatic nucleic acid synthesis: compositions and methods for altering monomer incorporation fidelity |
| US7057026B2 (en) | 2001-12-04 | 2006-06-06 | Solexa Limited | Labelled nucleotides |
| JP2006509040A (ja) | 2002-08-23 | 2006-03-16 | ソレックサ リミテッド | 修飾されたヌクレオチド |
| EP1790202A4 (en) | 2004-09-17 | 2013-02-20 | Pacific Biosciences California | APPARATUS AND METHOD FOR ANALYZING MOLECULES |
| GB0517097D0 (en) | 2005-08-19 | 2005-09-28 | Solexa Ltd | Modified nucleosides and nucleotides and uses thereof |
| US7405281B2 (en) | 2005-09-29 | 2008-07-29 | Pacific Biosciences Of California, Inc. | Fluorescent nucleotide analogs and uses therefor |
| EP1963536B1 (en) * | 2005-12-22 | 2016-05-04 | Pacific Biosciences of California, Inc. | Polymerases for nucleotide analogue incorporation |
| SG170802A1 (en) | 2006-03-31 | 2011-05-30 | Solexa Inc | Systems and devices for sequence by synthesis analysis |
| WO2007146158A1 (en) | 2006-06-07 | 2007-12-21 | The Trustees Of Columbia University In The City Of New York | Dna sequencing by nanopore using modified nucleotides |
| CA2666517A1 (en) | 2006-10-23 | 2008-05-02 | Pacific Biosciences Of California, Inc. | Polymerase enzymes and reagents for enhanced nucleic acid sequencing |
| KR101521990B1 (ko) | 2007-04-04 | 2015-05-20 | 더 리젠츠 오브 더 유니버시티 오브 캘리포니아 | 나노포어 사용을 위한 조성물, 장치, 시스템 및 방법 |
| US9027947B2 (en) | 2008-03-26 | 2015-05-12 | Fox Factory, Inc. | Methods and apparatus related to a unitary fork brace |
| WO2009145828A2 (en) | 2008-03-31 | 2009-12-03 | Pacific Biosciences Of California, Inc. | Two slow-step polymerase enzyme systems and methods |
| US7771903B2 (en) | 2008-05-28 | 2010-08-10 | Promos Technologies Pte. Ltd. | Photolithography with optical masks having more transparent features surrounded by less transparent features |
| US20110229877A1 (en) | 2008-07-07 | 2011-09-22 | Oxford Nanopore Technologies Limited | Enzyme-pore constructs |
| DK2344891T3 (en) | 2008-09-22 | 2016-06-06 | Univ Washington | MSP NANOPORES AND RELATED PROCEDURES |
| US9017937B1 (en) * | 2009-04-10 | 2015-04-28 | Pacific Biosciences Of California, Inc. | Nanopore sequencing using ratiometric impedance |
| US20140335513A9 (en) | 2009-09-30 | 2014-11-13 | Quantapore, Inc. | Hybrid nanopore device with optical detection and methods of using same |
| FI2539465T3 (fi) | 2010-02-23 | 2024-03-27 | Univ Washington | Analyyttien sekvensointi nanohuokosten avulla |
| US8652779B2 (en) | 2010-04-09 | 2014-02-18 | Pacific Biosciences Of California, Inc. | Nanopore sequencing using charge blockade labels |
| US9353412B2 (en) * | 2010-06-18 | 2016-05-31 | Illumina, Inc. | Conformational probes and methods for sequencing nucleic acids |
| US10443096B2 (en) * | 2010-12-17 | 2019-10-15 | The Trustees Of Columbia University In The City Of New York | DNA sequencing by synthesis using modified nucleotides and nanopore detection |
| WO2012121756A1 (en) | 2011-03-04 | 2012-09-13 | Quantapore, Inc. | Apparatus and methods for performing optical nanopore detection or sequencing |
| EP2697394A4 (en) * | 2011-04-12 | 2015-01-14 | Electronic Biosciences Inc | CHEMICALLY MODIFIED NANOPORA DEVICES AT A SPECIFIC SITE |
| JP5982472B2 (ja) * | 2011-05-27 | 2016-08-31 | ジナプシス インコーポレイテッド | 遺伝学的及び生物学的分析のためのシステム及び方法 |
| US10246741B2 (en) | 2011-05-27 | 2019-04-02 | Oxford Nanopore Technologies Ltd. | Coupling method |
| CN104076138B (zh) * | 2011-07-20 | 2016-08-24 | 加利福尼亚大学董事会 | 用于纳米孔多核苷酸测序和其他应用的补偿膜片钳放大器 |
| EP2987870B1 (en) | 2011-10-21 | 2020-02-19 | Oxford Nanopore Technologies Limited | Method of characterizing a target polynucleotide using a transmembrane pore and molecular motor |
| CN107082792A (zh) * | 2012-04-09 | 2017-08-22 | 纽约哥伦比亚大学理事会 | 纳米孔的制备方法和其用途 |
| US9777049B2 (en) | 2012-04-10 | 2017-10-03 | Oxford Nanopore Technologies Ltd. | Mutant lysenin pores |
| US9605309B2 (en) * | 2012-11-09 | 2017-03-28 | Genia Technologies, Inc. | Nucleic acid sequencing using tags |
| SG10202111841TA (en) | 2014-02-19 | 2021-12-30 | Univ Washington | Nanopore-based analysis of protein characteristics |
| CN104212711B (zh) * | 2014-04-08 | 2017-10-27 | 上海小海龟科技有限公司 | 电子传感器及基于电子传感器的基因探测方法 |
| SG11201609692SA (en) * | 2014-06-03 | 2016-12-29 | Illumina Inc | Compositions, systems, and methods for detecting events using tethers anchored to or adjacent to nanopores |
-
2016
- 2016-06-02 MY MYPI2017001670A patent/MY183442A/en unknown
- 2016-06-02 CA CA2986074A patent/CA2986074A1/en active Pending
- 2016-06-02 ES ES16730141T patent/ES3006336T3/es active Active
- 2016-06-02 CN CN201680040823.4A patent/CN107835858B/zh active Active
- 2016-06-02 KR KR1020187000097A patent/KR20180014159A/ko active Pending
- 2016-06-02 WO PCT/US2016/035457 patent/WO2016196755A1/en active Application Filing
- 2016-06-02 US US15/577,728 patent/US10648022B2/en active Active
- 2016-06-02 JP JP2017559682A patent/JP6595005B2/ja active Active
- 2016-06-02 EP EP16730141.5A patent/EP3303627B1/en active Active
- 2016-06-02 MX MX2017015517A patent/MX2017015517A/es unknown
- 2016-06-02 AU AU2016270887A patent/AU2016270887C1/en active Active
- 2016-06-02 IL IL255758A patent/IL255758B/he unknown
- 2016-06-02 SG SG10202107427PA patent/SG10202107427PA/en unknown
- 2016-06-02 CN CN202210285375.1A patent/CN114703264B/zh active Active
- 2016-06-02 IL IL293410A patent/IL293410B2/he unknown
- 2016-06-02 EP EP24210611.0A patent/EP4495255A2/en active Pending
- 2016-06-02 RU RU2017139536A patent/RU2713396C2/ru active
-
2017
- 2017-11-14 ZA ZA2017/07715A patent/ZA201707715B/en unknown
- 2017-11-30 MX MX2022006393A patent/MX2022006393A/es unknown
-
2018
- 2018-08-07 HK HK18110142.6A patent/HK1250749A1/zh unknown
-
2020
- 2020-05-08 US US16/870,238 patent/US11970734B2/en active Active
-
2023
- 2023-07-27 IL IL304812A patent/IL304812A/he unknown
-
2024
- 2024-03-28 US US18/620,915 patent/US20240376535A1/en active Pending
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