EP3762508A4 - Auf mikroarray basierende multiplex-pathogenanalyse und deren verwendung - Google Patents

Auf mikroarray basierende multiplex-pathogenanalyse und deren verwendung Download PDF

Info

Publication number: EP3762508A4
Authority: EP; European Patent Office
Prior art keywords: microarray based; based multiplex; pathogen analysis; multiplex pathogen; analysis
Prior art date: 2018-03-08
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.): Pending

Application number

EP19764885.0A

Other languages

English (en)

French (fr)

Other versions

EP3762508A2 (de

Inventor

Michael Edward Hogan

Melissa Rose MAY

Frederick Henry EGGERS

Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)

PathogenDx Inc

Original Assignee

PathogenDx Inc

Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)

2018-03-08

Filing date

2019-03-08

Publication date

2021-12-15

2018-03-08 Priority claimed from US15/916,036 external-priority patent/US10612075B2/en

2018-03-08 Priority claimed from US15/916,062 external-priority patent/US11542498B2/en

2018-10-11 Priority claimed from US16/158,276 external-priority patent/US10513745B2/en

2019-03-08 Application filed by PathogenDx Inc filed Critical PathogenDx Inc

2021-01-13 Publication of EP3762508A2 publication Critical patent/EP3762508A2/de

2021-12-15 Publication of EP3762508A4 publication Critical patent/EP3762508A4/de

Status Pending legal-status Critical Current

Classifications

- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
- C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/6895—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
- C12Q2563/107—Nucleic acid detection characterized by the use of physical, structural and functional properties fluorescence
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/13—Plant traits
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/16—Primer sets for multiplex assays

Landscapes

Chemical & Material Sciences (AREA)
Life Sciences & Earth Sciences (AREA)
Organic Chemistry (AREA)
Proteomics, Peptides & Aminoacids (AREA)
Engineering & Computer Science (AREA)
Health & Medical Sciences (AREA)
Zoology (AREA)
Wood Science & Technology (AREA)
Analytical Chemistry (AREA)
Biotechnology (AREA)
Microbiology (AREA)
General Engineering & Computer Science (AREA)
Physics & Mathematics (AREA)
Immunology (AREA)
Biophysics (AREA)
Biochemistry (AREA)
Bioinformatics & Cheminformatics (AREA)
Molecular Biology (AREA)
General Health & Medical Sciences (AREA)
Genetics & Genomics (AREA)
Botany (AREA)
Mycology (AREA)
Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Apparatus Associated With Microorganisms And Enzymes (AREA)

EP19764885.0A 2018-03-08 2019-03-08 Auf mikroarray basierende multiplex-pathogenanalyse und deren verwendung Pending EP3762508A4 (de)

Applications Claiming Priority (4)

Application Number	Priority Date	Filing Date	Title
US15/916,036 US10612075B2 (en)	2015-12-28	2018-03-08	Microarray based multiplex pathogen analysis and uses thereof
US15/916,062 US11542498B2 (en)	2015-12-28	2018-03-08	Microarray based multiplex pathogen analysis and uses thereof
US16/158,276 US10513745B2 (en)	2015-12-28	2018-10-11	Microarray based multiplex pathogen analysis and uses thereof
PCT/US2019/021317 WO2019173695A2 (en)	2018-03-08	2019-03-08	Microarray based multiplex pathogen analysis and uses thereof

Publications (2)

Publication Number	Publication Date
EP3762508A2 EP3762508A2 (de)	2021-01-13
EP3762508A4 true EP3762508A4 (de)	2021-12-15

Family

ID=67847534

Family Applications (1)

Application Number	Title	Priority Date	Filing Date
EP19764885.0A Pending EP3762508A4 (de)	2018-03-08	2019-03-08	Auf mikroarray basierende multiplex-pathogenanalyse und deren verwendung

Country Status (9)

Country	Link
EP (1)	EP3762508A4 (de)
JP (1)	JP2021516995A (de)
KR (1)	KR20210028142A (de)
CN (1)	CN112154215A (de)
AU (1)	AU2019231794A1 (de)
CA (1)	CA3093451A1 (de)
MX (1)	MX2020009282A (de)
WO (1)	WO2019173695A2 (de)
ZA (1)	ZA202006213B (de)

Families Citing this family (2)

* Cited by examiner, † Cited by third party
Publication number	Priority date	Publication date	Assignee	Title
US20210317540A1 (en) *	2015-12-28	2021-10-14	Pathogendx, Inc.	Microarray-Based Multiplex Fungal Pathogen Analysis
EP4198144A4 (de) *	2020-08-12	2024-03-13	GeneMind Biosciences Company Limited	Aminomodifizierter chip, herstellungsverfahren dafür und verwendung davon

Citations (2)

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WO1999005321A1 (en) *	1997-07-22	1999-02-04	Rapigene, Inc.	Amplification and other enzymatic reactions performed on nucleic acid arrays
US20170327599A1 (en) *	2013-05-14	2017-11-16	Genomics Usa, Inc.	Compositions and methods for entrapping protein on a surface

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DE68928853T2 (de) *	1988-05-20	1999-08-05	Cetus Corp., Emeryville, Calif.	Befestigung von sequenzspezifischen proben
ATE204290T1 (de) *	1996-11-06	2001-09-15	Sequenom Inc	Zusammensetzungen und verfahren zur immobilisierung von nukleinsäure auf festträgern
US6238869B1 (en) *	1997-12-19	2001-05-29	High Throughput Genomics, Inc.	High throughput assay system
JP2002522097A (ja) *	1998-08-14	2002-07-23	ザリージェンツオブザユニバーシティオブカリフォルニア	ヒト第２０染色体の２０ｑ１３領域における新規アンプリコンおよびその使用
ATE424468T1 (de) *	2001-07-11	2009-03-15	Baylor College Medicine	Verfahren und vorrichtungen auf grundlage einer neuen form eines nukleinsäureduplex auf einer oberfläche
AU2002366046A1 (en) *	2001-10-19	2003-06-10	Proligo Llc	Nucleic acid probes and methods to detect and/or quantify nucleic acid analytes
CA2604095A1 (en) *	2005-04-12	2006-10-19	454 Life Sciences Corporation	Methods for determining sequence variants using ultra-deep sequencing
JP5196846B2 (ja) *	2007-05-14	2013-05-15	キヤノン株式会社	プローブセット、プローブ担体、検査方法及びｄｎａ検出用キット
KR101770363B1 (ko) *	2009-04-02	2017-08-22	플루이다임 코포레이션	표적 핵산의 바코딩을 위한 멀티 프라이머 증폭 방법
EP2532754A1 (de) *	2011-06-07	2012-12-12	Koninklijke Philips Electronics N.V.	Vorrichtungen und Verfahren zur effizienten Erfassung von Nukleinsäuren
KR20180008785A (ko) *	2015-06-17	2018-01-24	도요세이칸 그룹 홀딩스 가부시키가이샤	미생물의 검사 방법, 미생물의 검사 키트, 미생물 검사용 마이크로어레이, 곰팡이 검출용 담체, 곰팡이의 검출 방법 및 곰팡이 검출용 키트

2019
- 2019-03-08 CA CA3093451A patent/CA3093451A1/en active Pending
- 2019-03-08 KR KR1020207029030A patent/KR20210028142A/ko not_active Ceased
- 2019-03-08 MX MX2020009282A patent/MX2020009282A/es unknown
- 2019-03-08 AU AU2019231794A patent/AU2019231794A1/en not_active Abandoned
- 2019-03-08 CN CN201980030521.2A patent/CN112154215A/zh active Pending
- 2019-03-08 JP JP2020571331A patent/JP2021516995A/ja active Pending
- 2019-03-08 WO PCT/US2019/021317 patent/WO2019173695A2/en unknown
- 2019-03-08 EP EP19764885.0A patent/EP3762508A4/de active Pending
2020
- 2020-10-07 ZA ZA2020/06213A patent/ZA202006213B/en unknown

Patent Citations (2)

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Publication number	Priority date	Publication date	Assignee	Title
WO1999005321A1 (en) *	1997-07-22	1999-02-04	Rapigene, Inc.	Amplification and other enzymatic reactions performed on nucleic acid arrays
US20170327599A1 (en) *	2013-05-14	2017-11-16	Genomics Usa, Inc.	Compositions and methods for entrapping protein on a surface

Non-Patent Citations (7)

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CONZONE SAMUEL D ET AL: "Glass slides to DNA microarrays", MATERIALSTODAY, vol. 7, no. 3, 1 March 2004 (2004-03-01) - 23 February 2004 (2004-02-23), pages 20 - 26, XP055858548, Retrieved from the Internet <URL:https://www.sciencedirect.com/science/article/pii/S1369702104001221> [retrieved on 20211108] *
DUFVA ET AL: "Fabrication of high quality microarrays", BIOMOLECULAR ENGINEERING, ELSEVIER, NEW YORK, NY, US, vol. 22, no. 5-6, 1 December 2005 (2005-12-01), pages 173 - 184, XP027706877, ISSN: 1389-0344, [retrieved on 20051201] *
M.M. NIKITIN ET AL: "Matrix approach to the simultaneous detection of multiple potato pathogens by real-time PCR", JOURNAL OF APPLIED MICROBIOLOGY, vol. 124, no. 3, 11 February 2018 (2018-02-11), GB, pages 797 - 809, XP055534414, ISSN: 1364-5072, DOI: 10.1111/jam.13686 *
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TANG J ET AL: "Polymerizing immobilization of acrylamide-modified nucleic acids and its application", BIOSENSORS AND BIOELECTRONICS, ELSEVIER SCIENCE LTD, UK, AMSTERDAM , NL, vol. 24, no. 7, 15 March 2009 (2009-03-15), pages 1817 - 1824, XP025958938, ISSN: 0956-5663, [retrieved on 20080927], DOI: 10.1016/J.BIOS.2008.09.018 *

Also Published As

Publication number	Publication date
ZA202006213B (en)	2022-01-26
WO2019173695A2 (en)	2019-09-12
KR20210028142A (ko)	2021-03-11
MX2020009282A (es)	2021-01-08
CA3093451A1 (en)	2019-09-12
EP3762508A2 (de)	2021-01-13
WO2019173695A3 (en)	2019-12-26
AU2019231794A1 (en)	2020-10-29
CN112154215A (zh)	2020-12-29
JP2021516995A (ja)	2021-07-15

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Legal Events

Date	Code	Title	Description
2019-09-14	STAA	Information on the status of an ep patent application or granted ep patent	Free format text: STATUS: THE INTERNATIONAL PUBLICATION HAS BEEN MADE
2020-12-11	PUAI	Public reference made under article 153(3) epc to a published international application that has entered the european phase	Free format text: ORIGINAL CODE: 0009012
2020-12-11	STAA	Information on the status of an ep patent application or granted ep patent	Free format text: STATUS: REQUEST FOR EXAMINATION WAS MADE
2021-01-13	17P	Request for examination filed	Effective date: 20201007
2021-01-13	AK	Designated contracting states	Kind code of ref document: A2 Designated state(s): AL AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR
2021-01-13	AX	Request for extension of the european patent	Extension state: BA ME
2021-06-16	DAV	Request for validation of the european patent (deleted)
2021-06-16	DAX	Request for extension of the european patent (deleted)
2021-12-15	A4	Supplementary search report drawn up and despatched	Effective date: 20211117
2021-12-15	RIC1	Information provided on ipc code assigned before grant	Ipc: G16B 25/30 20190101ALI20211111BHEP Ipc: G16B 25/20 20190101ALI20211111BHEP Ipc: G16B 20/10 20190101ALI20211111BHEP Ipc: G01N 33/533 20060101ALI20211111BHEP Ipc: C12Q 1/6895 20180101ALI20211111BHEP Ipc: C12Q 1/6893 20180101ALI20211111BHEP Ipc: C12Q 1/689 20180101ALI20211111BHEP Ipc: C12Q 1/6853 20180101ALI20211111BHEP Ipc: C12Q 1/6837 20180101ALI20211111BHEP Ipc: C12Q 1/6809 20180101AFI20211111BHEP