EP1508048A1 - Niveau-kontrollierte pipette für automatische analysevorrichtungen - Google Patents
Niveau-kontrollierte pipette für automatische analysevorrichtungenInfo
- Publication number
- EP1508048A1 EP1508048A1 EP03736805A EP03736805A EP1508048A1 EP 1508048 A1 EP1508048 A1 EP 1508048A1 EP 03736805 A EP03736805 A EP 03736805A EP 03736805 A EP03736805 A EP 03736805A EP 1508048 A1 EP1508048 A1 EP 1508048A1
- Authority
- EP
- European Patent Office
- Prior art keywords
- pipette tip
- pipette
- energy
- analytic device
- coordinate
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Withdrawn
Links
- 238000000018 DNA microarray Methods 0.000 claims abstract description 40
- 239000012530 fluid Substances 0.000 claims abstract description 40
- 230000008878 coupling Effects 0.000 claims abstract description 3
- 238000010168 coupling process Methods 0.000 claims abstract description 3
- 238000005859 coupling reaction Methods 0.000 claims abstract description 3
- 238000002604 ultrasonography Methods 0.000 claims description 16
- 239000003153 chemical reaction reagent Substances 0.000 claims description 14
- 230000007246 mechanism Effects 0.000 claims description 9
- 238000012546 transfer Methods 0.000 claims description 9
- 239000007788 liquid Substances 0.000 claims description 7
- 238000013459 approach Methods 0.000 claims description 6
- 230000005693 optoelectronics Effects 0.000 claims description 5
- 230000001066 destructive effect Effects 0.000 claims description 4
- 239000000523 sample Substances 0.000 description 17
- 230000003287 optical effect Effects 0.000 description 8
- 238000012545 processing Methods 0.000 description 8
- 238000001514 detection method Methods 0.000 description 6
- 238000006073 displacement reaction Methods 0.000 description 6
- 238000012864 cross contamination Methods 0.000 description 4
- 239000012491 analyte Substances 0.000 description 3
- 230000008901 benefit Effects 0.000 description 3
- 239000000463 material Substances 0.000 description 3
- 238000004140 cleaning Methods 0.000 description 2
- 230000000694 effects Effects 0.000 description 2
- 239000000835 fiber Substances 0.000 description 2
- 238000005286 illumination Methods 0.000 description 2
- 239000012528 membrane Substances 0.000 description 2
- 238000000034 method Methods 0.000 description 2
- 239000004698 Polyethylene Substances 0.000 description 1
- 239000004809 Teflon Substances 0.000 description 1
- 229920006362 Teflon® Polymers 0.000 description 1
- 239000000443 aerosol Substances 0.000 description 1
- 230000008859 change Effects 0.000 description 1
- 150000001875 compounds Chemical class 0.000 description 1
- 230000007423 decrease Effects 0.000 description 1
- 230000008021 deposition Effects 0.000 description 1
- 239000003599 detergent Substances 0.000 description 1
- 230000007613 environmental effect Effects 0.000 description 1
- 238000012423 maintenance Methods 0.000 description 1
- 238000004519 manufacturing process Methods 0.000 description 1
- 229910052751 metal Inorganic materials 0.000 description 1
- 239000002184 metal Substances 0.000 description 1
- 229910001092 metal group alloy Inorganic materials 0.000 description 1
- 150000002739 metals Chemical class 0.000 description 1
- 238000002493 microarray Methods 0.000 description 1
- 238000012986 modification Methods 0.000 description 1
- 230000004048 modification Effects 0.000 description 1
- 230000000704 physical effect Effects 0.000 description 1
- -1 polyethylene Polymers 0.000 description 1
- 229920000573 polyethylene Polymers 0.000 description 1
- 229920000642 polymer Polymers 0.000 description 1
- 230000000717 retained effect Effects 0.000 description 1
- 239000007787 solid Substances 0.000 description 1
- 239000002904 solvent Substances 0.000 description 1
- 239000000126 substance Substances 0.000 description 1
- 239000000758 substrate Substances 0.000 description 1
- 230000000153 supplemental effect Effects 0.000 description 1
- 229920001059 synthetic polymer Polymers 0.000 description 1
- 238000013024 troubleshooting Methods 0.000 description 1
Classifications
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N35/00—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor
- G01N35/00584—Control arrangements for automatic analysers
- G01N35/00722—Communications; Identification
- G01N35/00732—Identification of carriers, materials or components in automatic analysers
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N35/00—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor
- G01N35/00029—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor provided with flat sample substrates, e.g. slides
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N35/00—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor
- G01N35/10—Devices for transferring samples or any liquids to, in, or from, the analysis apparatus, e.g. suction devices, injection devices
- G01N35/1009—Characterised by arrangements for controlling the aspiration or dispense of liquids
- G01N35/1016—Control of the volume dispensed or introduced
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N35/00—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor
- G01N35/00029—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor provided with flat sample substrates, e.g. slides
- G01N2035/00099—Characterised by type of test elements
- G01N2035/00158—Elements containing microarrays, i.e. "biochip"
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N35/00—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor
- G01N35/00584—Control arrangements for automatic analysers
- G01N35/00594—Quality control, including calibration or testing of components of the analyser
- G01N35/00613—Quality control
- G01N35/00663—Quality control of consumables
- G01N2035/00673—Quality control of consumables of reagents
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N35/00—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor
- G01N35/00584—Control arrangements for automatic analysers
- G01N35/00722—Communications; Identification
- G01N35/00732—Identification of carriers, materials or components in automatic analysers
- G01N2035/00742—Type of codes
- G01N2035/00782—Type of codes reprogrammmable code
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N35/00—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor
- G01N35/10—Devices for transferring samples or any liquids to, in, or from, the analysis apparatus, e.g. suction devices, injection devices
- G01N35/1009—Characterised by arrangements for controlling the aspiration or dispense of liquids
- G01N2035/1025—Fluid level sensing
Definitions
- the field of the invention is pipettes, and particularly pipettes in automated analytic devices.
- Positive displacement pipettes generally provide numerous advantages. For example, cross contamination between different samples aspirated by the same pipette (e.g., via aerosol) is virtually eliminated. Moreover, positive displacement pipettes often provide significantly higher accuracy and precision that is typically not achieved with air- interface pipettes, especially where high- vapor pressure liquids, detergent containing fluids, and/or volatile solvents are aspirated. However, such pipettes generally require close-tolerance manufactured pipette tips, which are relatively expensive. Moreover, disposable close-tolerance manufactured pipette tips for positive displacement pipettes are typically not available for use in an robotic pipettors. Alternatively, non-disposable pipette tips (e.g., Teflon coated tips) for positive displacement pipettes may be used in robotic pipettors. However, cross contamination frequently occurs unless specific additional cleaning steps are implemented into a robotic pipetting operation.
- Air interface pipettes advantageously combine relatively inexpensive operation with satisfactory accuracy and precision for many applications.
- a single vacuum pump may control multiple pipette channels, which decreases operating cost due to reduced maintenance of moving parts.
- cross contamination may arise, especially where no additional cleaning steps are implemented.
- disposable pipette tips may be employed.
- disposal of used pipette tips may become problematic where the pipettor is enclosed within an analytic device.
- the present invention is directed to an automatic level-controlled pipette in which one or more sensors detect the presence and fill level of a pipette tip and the position of the pipette tip relative to a surface onto which the fluid is to be deposited.
- Particularly contemplated automatic level-controlled pipette are part of an analytic device.
- an analytic device with an automatic pipette will include a pipette tip receiving element that is coupled to a mechanism that translates the pipette tip receiving element along at least two of an x-coordinate, a y- coordinate, and a z-coordinate, wherein the pipette tip receiving element is further operationally coupled to a sensor that detects presence of a disposable pipette tip that is removably coupled to the pipette tip receiving element.
- a first energy source and a first energy detector are coupled to the pipette tip receiving element wherein the first energy source provides a first energy to a volume that is enclosed by the pipette tip, and wherein first energy detector receives at least a portion of the first energy from the volume.
- a second energy source and a second energy detector are coupled to the pipette tip receiving element wherein the second energy source provides a second energy to a surface of a biochip when the pipette tip approaches the surface of the biochip, and a processor is electronically coupled to the first and second energy detectors, wherein the processor controls accurate aspiration of a predetermined volume using a signal from the first detector, and wherein the processor controls movement of the pipette tip along a z-coordinate using a signal from the second detector.
- the first energy source in especially preferred analytic devices comprises a laser, wherein the first energy is provided to the volume via a light guide. In such devices, accurate aspiration may then be calculated from reflected laser light that is detected by the first energy detector.
- the second energy source may advantageously comprise a sonic transducer (e.g. , an ultrasound transducer), while the sensor is preferably an optoelectronic sensor. Disposable pipette tips will generally have various volumes, however, volumes of 200 microliter and less are especially preferred. With respect to the mechanism it is generally preferred that the mechanism comprises a robotic arm that translates the pipette tip receiving element along the x-, y-, and z-coordinate.
- Contemplated analytic devices may further include a data transfer interface, that provides data to the operator or a person other than the operator (e.g., in a remote place relative to the analytic device).
- contemplated analytic devices may also include a sample station with a multi-well plate and a multi-reagent pack, wherein the pipette tip removes a fluid from the multi-well plate and/or the multi- reagent pack and dispenses the fluid onto the surface of the biochip.
- an automatic pipette in an analytic device includes a disposable pipette tip and a first and a second sensor, wherein the first sensor detects a volume of a liquid within the pipette tip and wherein the second sensor detects a vertical distance between the pipette tip and a biochip that is disposed in the analytic device.
- the first sensor in particularly preferred automatic pipettes will include a laser that delivers a laser beam into the pipette tip, wherein the volume of the liquid is determined by destructive interference, constructive interference, phase modulation, and/or triangulation.
- Preferred second sensors comprise an ultrasound transducer that delivers a sound beam to the surface of the biochip, wherein the vertical distance is determined using a time-of-flight algorithm.
- contemplated automatic pipettes may further include a third sensor that detects coupling of the disposable pipette tip to the automatic pipette.
- Figure 1 is a schematic view of an exemplary automatic level-controlled pipette aspirating a fluid from a fluid source.
- Figure 2 is a schematic view of an exemplary automatic level-controlled pipette approaching the surface of a biochip.
- Figure 3 is a schematic view of an exemplary analytic device that includes an automatic level-controlled pipette.
- analytic device refers to a device in which a sample is processed in one or more steps to detect the presence and/or quantity of one or more particular analytes, or in which an analyte is processed in one or more steps to determine a physical and/or chemical property of the analyte.
- Particularly preferred analytic devices are described in our copending and commonly owned international patent application with the serial number PCT US02/17006 (supra). Consequently, particularly preferred analytic devices will include an optical detector, one or more reagent reservoirs and/or sample reservoirs, and an automatic pipette.
- automated pipette generally refers to a pipette in which aspiration and dispensation of a fluid is performed using an electronically operated device (e.g. , vacuum pump or plunger-type pump driven by a stepper motor or direct drive motor), and in which the pipette is moved along at least one coordinate without manual user intervention.
- an electronically operated device e.g. , vacuum pump or plunger-type pump driven by a stepper motor or direct drive motor
- the term “moved...without manual user intervention” as used herein means the pipette is moved without the user physically touching (e.g., manually gripping or lifting) the pipette, however, does not exclude manual programming (e.g., typing on a keyboard or touch screen) of the analytic device to effect automatic movement of the pipette.
- Particularly suitable automatic pipettes include single-channel pipettes, however, multi-channel pipettes are (while not preferred) not specifically excluded.
- dispensable pipette tip refers to a tip which is under normal use conditions employed for single use (i.e., aspiration of a desired volume into the tip, followed by dispensation of at least part of the aspirated volume, followed by discarding of the tip).
- Disposable pipette tips are typically manufactured from a polymer (e.g., polyethylene) and are commercially available from numerous sources.
- the term "the processor controls accurate aspiration of a predetermined volume” means that a processor (e.g., microprocessor of a computer that is electronically coupled to the automatic pipette, or a dedicated microprocessor) determines the actual volume of fluid aspirated into the pipette tip using a signal provided by a detector, wherein aspiration is terminated once the determined volume is substantially identical (i.e., 5%, more typically 2.5%, and most typically less than 1.5% coefficient of variation) with the predetermined volume.
- a processor e.g., microprocessor of a computer that is electronically coupled to the automatic pipette, or a dedicated microprocessor
- biochip refers to an array of probes which are coupled to a substrate in a plurality of predetermined positions. Suitable biochips may be at least partially disposed within a housing, and particularly preferred biochips are described in our commonly-owned and copending U.S. Patent Application No. 10/346,879, filed January 17, 2003, and the PCT applications with the serial numbers PCT/US02/03917, filed January 24, 2002, and PCT/US01/47991, filed December 11, 2001, all of which are incorporated by reference herein.
- the inventors discovered that an automatic pipette using disposable pipette tips can be operated without manual user intervention at relatively high accuracy/precision when a plurality of sensors control various functions of the automated pipette.
- an exemplary pipettor 100 of an analytic device includes a robotic arm 102 to which a pipette tip receiving element 110 is coupled.
- Pump 120 is pneumatically coupled to the pipette tip receiving element 110, and laser/detector element 130 is optically coupled to the pipette receiving element 110.
- Ultrasound transducer/detector element 140 and optoelectronic detector 150 are further coupled to the pipette receiving element 110.
- a disposable pipette tip 160 with aspirated fluid 142 is removably coupled to the fitting 112, while the tip of the pipette tip 160 is immersed in fluid 140, which is retained by container 170.
- a controller circuit positions robotic arm 102 over a fluid-filled container, and moves the tip of disposable pipette tip 160 below the surface of the fluid.
- pump 120 starts removing air from the pipette receiving element 110, thereby creating an under pressure, which forces fluid 140 into the tip.
- the laser from the laser/detector element 130 provide a light beam (thin arrow) via mirror 132 into the pipette tip, and the laser light is reflected by the fluid as the fluid is aspirated into the pipette tip 160.
- the so reflected light travels via mirror 162 to the detector of the laser/detector element 130, and the distance between the first position of reflection (i.e., entry of the fluid into the tip) and subsequent positions of reflection is continually measured using destructive and/or constructive interference. Based on the height difference between the first position and the subsequent positions, the volume of aspirated liquid is calculated by a processor, which stops the pump 120 when the measured volume is substantially the same (i. e. , 5%, more typically 2.5%, and most typically less than 1.5% coefficient of variation) as a predetermined volume.
- FIG. 2 schematically depicts exemplary pipettor 200 (which is the pipettor of Figure 1 in which like numerals refer to like components), now located over the biochip 272, which is coupled to the housing 270.
- the pipette tip 260 while remaining engaged with the fitting 212 holds the aspirated fluid 242.
- the pipettor 200 includes pipette tip receiving element 210, to which are coupled the optoelectronic detector 250, the pump 220, the laser/detector element 230, and the ultrasound transducer 240/detector 240.
- the ultrasound transducer emits ultrasound energy 240A directed towards the biochip (and/or the housing) 272.
- the vertical distance between the biochip and the pipette tip receiving element 210 (and/or tip of the pipette tip) is calculated by a processor using a time-of-flight algorithm.
- FIG. 3 depicts an exemplary analytic device 300 in which a pipettor 310 is integrated.
- a detector 320 detects an analyte signal from a biochip that is moved from a multi-biochip magazine 340 via a sample processing platform 330 to the detector 320.
- a fluid sample is transferred from a multi-well plate of sample station 350 with the pipettor 310, while reagents are transferred from the multi-reagent packs 360 to the biochip on the sample processing platform 330 using pipettor 310.
- the robotic arm of the pipettor further includes a manipulator (which may be separately movable - e.g., linear or rotational) to push the biochip from one location in the analytic device to the next.
- a manipulator which may be separately movable - e.g., linear or rotational
- a data transfer interface 370 provides connectivity to a computer outside of the analytic device (not shown). Particularly suitable analytic devices are described in copending international patent application with the serial number PCT US02/17006, filed May 29, 2002 (supra).
- the pipette tip receiving element is pneumatically coupled to a pump and includes a fitting that releasable engages with a disposable pipette tip (infra). Therefore, the shape and size of suitable pipette tip receiving elements may vary substantially. For example, where the pump has an elongate portion, the pipette tip receiving element may be integral with and formed by the pump. On the other hand, and especially where the laser/detector element is coupled to the pipette tip receiving element such that the laser beam requires at least one change in direction to be guided into the tip, suitable pipette tip receiving elements may be box-shaped, cylinder shaped, or irregularly shaped.
- contemplated pipette tip receiving elements will generally include a hollow portion that pneumatically couples the pump with the pipette tip, and it is further preferred that the laser beam passes through at least part of the hollow portion, wherein the laser beam may be directed through the hollow or guided through the hollow portion (e.g. , via a fiber optic cable).
- the pipette tip receiving element may also be completely omitted, or be integrated into the pump.
- the fitting may be an integral structure of the pipette tip receiving element or the pump wherein the pipette tip engages with a frustroconical structure (e.g. , similar as to the tip of a manual pipette using disposable pipette tips).
- the fitting may also be a separate be frustroconical pipe that is pneumatically coupled to the pipette tip receiving element.
- materials for the fitting as well as for the pipette tip receiving element
- preferred materials include metals, metal alloys, synthetic polymers, and all reasonable combinations thereof.
- pipette tips are suitable for use in conjunction with the teachings presented herein.
- particularly preferred pipette tips include those with a volume of equal or less than 1000 microliter, and more typically 200 microliter (The term "volume of equal or less than...microliter" refers to the fluid volume for which such tips are typically designed. Therefore, while a tip may be designed for equal or less than 200 microliter, the actual inner volume defined by the walls of the tip may be 350 microliter, or even more).
- custom-made pipette tips are also deemed suitable (e.g., to include a specific volume, or to achieve a particular optical or other physical property).
- suitable sensors may include mechanical sensors (e.g., comprising a movable element that opens or closes an electrical circuit in the presence of absence of the pipette tip), electrical sensors ⁇ e.g., where the pipette tip insulatingly interrupts an electrical circuit), and/or magnetic sensors (e.g., where at least part of the pipette tip comprises a magnetic portion).
- contemplated pipettors may be coupled to various mechanisms that translate the pipette tip receiving element along at least one, and more preferably at least two coordinates.
- the pipette tip receiving element is coupled to a robotic arm that is movable coupled to a rail or other guiding structure that provides movement along the x-coordinate, while the pipette tip receiving element is movable coupled to a robotic arm along the y- and z-coordinate.
- a robotic arm with a rotating base may be employed.
- the robotic arm may also provide movement of the pipette tip receiving element along only two coordinates, while movement of the receiving element along a third coordinate relative to the biochip, sample processing platform or other structure may be provided by moving the biochip, sample processing platform or other structure along the third coordinate.
- robotic arms may optionally further comprise a mechanism that removes the disposable pipette tip.
- Suitable pumps for contemplated pipettors may vary considerably, and it is generally contemplated that all known pumps for automatic pipettes may be used, as long as the pump will provide aspiration and dispensation of a fluid into and from a disposable pipette tip.
- Contemplated pumps may therefore include stepper motors, liner motors, direct drive motors, piezo motors, etc. that actuate a membrane vacuum pump or a plunger-type vacuum pump.
- the pump may be directly coupled to the pipette tip receiving element or indirectly via a pneumatic conduit.
- the pump may also form at least part of the pipette tip receiving element and/or fitting.
- volume of fluid that can be aspirated for a single aspiration with suitable pumps e.g., plunger-type pump
- preferred volumes will generally be less than 10 ml, more typically less than 5 ml, and most typically less than 2 ml.
- membrane or other pumps are employed, limiting volumes are typically not encountered.
- the pump may also be replaced by a vacuum line and/or pressurized line. In such configurations, control over aspiration and/or dispensing is preferably performed using solenoids that open/close the vacuum and/or pressurized line.
- the pump is electronically controlled by a processor, wherein specific control modes will vary with a particular application.
- control modes will generally include operator-directed control (e.g., operator instructing processor to aspirate or dispense a specific volume), and software-directed control (e.g., software maintains aspiration until a the volume of fluid in the pipette tip is identical with a predetermined volume).
- laser/detector element it is generally contemplated that all laser/detector elements are suitable so long as such elements can be used to determine a distance between the detector and the surface of a fluid that is aspirated into the pipette tip.
- suitable elements may operate using various configurations and algorithms, and especially preferred elements will be configured to operate using time-of-flight detection, interference and/or phase detection, strength of reflection, and/or triangulation detection.
- suitable laser/detector elements may include additional components. For example, where the distance is calculated using the light phase and a destructive/constructive interference algorithm, a modulator may be included. On the other hand, where the distance is calculated via time-of-flight, a timer may be included.
- supplemental optics e.g. , mirror, prism, etc.
- laser distance measures Commercially available and known in the art, and all of such measures are considered suitable for use herein.
- Suitable light guides include fiber optics, mirrors, and/or channels through which at least a portion of the emitted and/or reflected light passes. Therefore, in at least some of the contemplated devices, the laser/detector elements may be optically coupled to the pipette tip receiving element via light guide.
- a light guide may be entirely omitted, or may be formed by a passageway between the laser/detector element and the pipette tip.
- the distance may also be calculated using energy sources other than a laser and energy detectors other than a photodiode.
- energy sources other than a laser and energy detectors other than a photodiode.
- suitable first energy sources may include polychromatic light sources (e.g., incandescent, fluorescent).
- alternative first energy sources may also be non-optical energy sources, and especially preferred alternative sources will include an ultrasound transducer. There are numerous ultrasound transducers for measuring a distance Icnown in the art (infra), and all of such transducers are considered suitable for use herein so long as the ultrasound energy is directed into and received from the pipette tip.
- non- ultrasound acoustic transducers are also contemplated suitable for use herein. While it is generally contemplated that an ultrasound transducer operates in a pulse-echo mode, it is also contemplated (and particularly where separate transmitters and receivers are used) that pitch-catch arrangements may also be employed.
- a first energy is employed for detection of the volume of aspirated fluid in the disposable pipette tip
- aspiration of a predetermined volume may also be achieved by without a first energy source and detector.
- suitable volumes may be aspirated by electronic control of pump time and/or pump speed.
- the volume of the aspirated fluid may indirectly be determined by volume control of the container from which the fluid is aspirated.
- the first detector may also be employed to measure the amount of fluorescence of a fluid that is aspirated. The so measured fluorescence may then be used to determine the volume within the tip.
- the second energy source for determination of the distance between the biochip and the pipette tip and/or pipette tip receiving element comprises an acoustic energy source, and all suitable acoustic energy sources are considered suitable for use herein.
- suitable acoustic energy sources include an ultrasound transducer/receiver, and a non-ultrasound acoustic transducer/receiver.
- the term "transducer” as used herein refers to a device that converts electric energy into acoustic energy, and may further also convert acoustic energy to electric energy. Therefore, a transducer may be employed as transmitter alone, or may be operated as transmitter and receiver.
- the biochip comprises a plurality of analytes bound a plurality of probes, wherein at least some of the analytes further include a photolabile compound.
- the acoustic transducer/detector operates under conditions that will provide a signal resolution of less than 5 mm, more preferably less than 2 mm, and most preferably less than 1 mm. Therefore, it is generally preferred that the transducer is an ultrasound transducer or a sonic transducer operating at a frequency between of about 7- 15 kHz.
- a pulse-echo mode is generally preferred where the time-of-flight is employed to determine the distance between the transducer and the biochip (or other surface, including fluid surface of a reagent in a reagent container or sample fluid surface in a multi-well plate).
- the transmitter and detector may be spatially separated. Therefore, the acoustic distance measuring device may also operate in a pitch-catch arrangement and the distance between the transmitter and the biochip or other surface may be determined using time-of-flight or triangulation.
- the distance between the transmitter and the biochip or other surface can then be employed to calculate the distance between the tip of the pipette tip and the biochip or other surface provided the length of the disposable pipette tip and/or the spatial relationship between the transducer and the tip of the pipette tip is known.
- Such distance determination is especially preferred where the correct positioning of a pipette tip relative to a fluid surface or solid surface is desired in an automated system where the pipettor approaches such surfaces. Feedback for correct position will then be provided by the acoustic detector as the pipette tip approaches (along the z-coordinate) a surface.
- the second energy may advantageously be employed to ensure that the tip of the disposable pipette tip is in contact with the surface or immersed in the fluid that is to be aspirated.
- contemplated configurations allow deposition of a fluid to the surface of a biochip such that the tip of the disposable pipette tip will not contact the surface of the biochip, which is particularly important where the biochip is moved by an actuator within an automated analytic device.
- use of an acoustic energy will further prevent inadvertent photodeletorious effects (e.g., photobleaching of a fluorescence label) that would otherwise be likely to occur where distance determination is performed with an optical system that requires illumination of the biochip.
- optical detection using a light source and a detector as described above for the first energy source are not excluded for use in conjunction of the second energy source.
- the processor may be integrated into the analytic device and controls further functionalities of the analytic device (e.g., detector, movement of a robotic arm, temperature control of a the sample processing platform, pipette motor, etc.).
- the processor may be also be a dedicated processor that electronically communicates with the first or second energy source and at least one other component of the analyzer.
- the processor is electronically coupled to the pipette motor, the robotic arm, and first and second energy detectors, wherein the processor controls accurate aspiration of a predetermined volume using the signal from the first detector, and wherein the processor controls movement of the pipette tip along a z-coordinate using the signal from the second detector.
- Contemplated analytic devices may advantageously include a data transfer interface that is electronically coupled to the automatic pipettor or a computer that controls operation of the analytic device/pipettor.
- data transfer interfaces e.g., telephonic, DSL, or cable modem
- the pipettor may include various sensors that provide feedback on operating condition, presence of disposable tip, environmental parameters, etc.
- a status code e.g., aspiration in progress, "no pipette tip” alarm, etc.
- a status code e.g., aspiration in progress, "no pipette tip” alarm, etc.
- the inventors contemplate an analytic device with an automated pipette in which a pipette tip receiving element is coupled to a mechanism that translates the pipette tip receiving element along at least two of an x-coordinate, a y-coordinate, and a z-coordinate.
- the pipette tip receiving element is further operationally coupled to a sensor that detects presence of a disposable pipette tip that is removably coupled to the pipette tip receiving element.
- a first energy source and a first energy detector are coupled to the pipette tip receiving element wherein the first energy source provides a first energy to a volume that is enclosed by the pipette tip, and wherein first energy detector receives at least a portion of the first energy from the volume.
- a second energy source and a second energy detector are coupled to the pipette tip receiving element wherein the second energy source provides a second energy to a surface of a biochip when the pipette tip approaches the surface of the biochip, and a processor is electronically coupled to the first and second energy detectors, wherein the processor controls accurate aspiration of a predetermined volume using a signal from the first detector, and wherein the processor controls movement of the pipette tip along a z-coordinate using a signal from the second detector.
- Such devices may further a include a sample station with a multi-well plate and a multi-reagent pack, wherein the pipette tip removes a fluid from at least one of the multi-well plate and the multi-reagent pack and dispenses the fluid onto the surface of the biochip.
- the inventors contemplate an automatic pipette in an analytic device, comprising a disposable pipette tip and a first and a second sensor, wherein the first sensor detects a volume of a liquid within the pipette tip and wherein the second sensor detects a vertical distance between the pipette tip and a biochip that is disposed in the analytic device.
- analytic devices may also include a multi-reagent pack, an optical detector, and a integrated sample processing platform to form an integrated analytic device.
- multi-reagent packs contemplated in conjunction with the teachings presented herein include those described in our co- pending international patent application with the title “Multi-Reagent Pack”, filed May, 28, 2003, which is incorporated by reference herein.
- sample processing platforms contemplated in conjunction with the teachings presented herein include those described in our co-pending international patent application with the title “Integrated Sample Processing Platform", filed May, 28, 2003, which is incorporated by reference herein.
- Particularly preferred optical detectors contemplated in conjunction with the teachings presented herein include those described in our co-pending international patent application with the title "Microarray Detector and Methods", filed May, 28, 2003, which is incorporated by reference herein.
Landscapes
- Physics & Mathematics (AREA)
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Analytical Chemistry (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- General Physics & Mathematics (AREA)
- Immunology (AREA)
- Pathology (AREA)
- Investigating, Analyzing Materials By Fluorescence Or Luminescence (AREA)
- Automatic Analysis And Handling Materials Therefor (AREA)
- Investigating Or Analysing Materials By The Use Of Chemical Reactions (AREA)
Applications Claiming Priority (5)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US38389602P | 2002-05-28 | 2002-05-28 | |
US383896P | 2002-05-28 | ||
WOPCT/US02/17006 | 2002-05-29 | ||
PCT/US2002/017006 WO2003102241A1 (en) | 2002-05-29 | 2002-05-29 | Integrated micro array system and methods therefor |
PCT/US2003/017382 WO2003100442A1 (en) | 2002-05-28 | 2003-05-28 | Level-controlled pipette for automated analytic devices |
Publications (2)
Publication Number | Publication Date |
---|---|
EP1508048A1 true EP1508048A1 (de) | 2005-02-23 |
EP1508048A4 EP1508048A4 (de) | 2009-11-04 |
Family
ID=32824801
Family Applications (4)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
EP03736749A Withdrawn EP1508028A4 (de) | 2002-05-28 | 2003-05-28 | Integrierte probenbearbeitungsplattform |
EP03755528A Withdrawn EP1508029A4 (de) | 2002-05-28 | 2003-05-28 | Multireagenzpackung |
EP03736805A Withdrawn EP1508048A4 (de) | 2002-05-28 | 2003-05-28 | Niveau-kontrollierte pipette für automatische analysevorrichtungen |
EP03731464A Ceased EP1508027A4 (de) | 2002-05-28 | 2003-05-28 | Mikroarray-detektor und -verfahren |
Family Applications Before (2)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
EP03736749A Withdrawn EP1508028A4 (de) | 2002-05-28 | 2003-05-28 | Integrierte probenbearbeitungsplattform |
EP03755528A Withdrawn EP1508029A4 (de) | 2002-05-28 | 2003-05-28 | Multireagenzpackung |
Family Applications After (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
EP03731464A Ceased EP1508027A4 (de) | 2002-05-28 | 2003-05-28 | Mikroarray-detektor und -verfahren |
Country Status (2)
Country | Link |
---|---|
EP (4) | EP1508028A4 (de) |
WO (2) | WO2003100380A2 (de) |
Families Citing this family (15)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
KR20060085754A (ko) * | 2005-01-25 | 2006-07-28 | 삼성전자주식회사 | 광학적 스캐너를 보정하기 위한 장치, 그를 제조하는 방법및 그를 이용하여 광학적 스캐너를 보정하는 방법 |
CN101663576B (zh) * | 2005-04-12 | 2012-05-23 | 卡钳生命科学股份有限公司 | 用于微流体器件的紧凑型光检测系统 |
US8351026B2 (en) * | 2005-04-22 | 2013-01-08 | Affymetrix, Inc. | Methods and devices for reading microarrays |
JP2006337245A (ja) * | 2005-06-03 | 2006-12-14 | Matsushita Electric Ind Co Ltd | 蛍光読み取り装置 |
EP1929274B1 (de) | 2005-09-21 | 2016-07-27 | Luminex Corporation | Verfahren und systeme für die bilddatenverarbeitung |
JP4711125B2 (ja) | 2005-09-27 | 2011-06-29 | 横河電機株式会社 | バイオチップ、バイオチップ読み取り装置、およびバイオチップ読み取り方法 |
JP4955244B2 (ja) * | 2005-09-27 | 2012-06-20 | 横河電機株式会社 | バイオチップ読み取り装置およびバイオチップ読み取り方法 |
US11035823B2 (en) | 2009-03-17 | 2021-06-15 | Qiagen Sciences, Llc | Methods and devices for sequencing nucleic acids in smaller batches |
US11940413B2 (en) | 2007-02-05 | 2024-03-26 | IsoPlexis Corporation | Methods and devices for sequencing nucleic acids in smaller batches |
US8481259B2 (en) | 2007-02-05 | 2013-07-09 | Intelligent Bio-Systems, Inc. | Methods and devices for sequencing nucleic acids in smaller batches |
CA2891142C (en) | 2007-02-05 | 2018-10-09 | Intelligent Bio-Systems, Inc. | A method of nucleic acid sequencing comprising first and second flow cells |
JP5072688B2 (ja) | 2008-04-02 | 2012-11-14 | キヤノン株式会社 | 走査型撮像装置 |
US9767342B2 (en) | 2009-05-22 | 2017-09-19 | Affymetrix, Inc. | Methods and devices for reading microarrays |
US8859996B2 (en) | 2011-10-18 | 2014-10-14 | Luminex Corporation | Methods and systems for image data processing |
EP3567359B1 (de) * | 2018-05-08 | 2022-10-05 | Sartorius Biohit Liquid Handling Oy | Flüssigkeitshandhabungssystem und verfahren zur analyse des zustands einer spitze |
Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5582798A (en) * | 1995-02-23 | 1996-12-10 | Cyberlab Inc. | Volume sensing device |
EP0972744A2 (de) * | 1998-07-14 | 2000-01-19 | Bayer Corporation | Automatischer Stopfenentferner |
Family Cites Families (17)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US4975647A (en) * | 1987-06-01 | 1990-12-04 | Nova Biomedical Corporation | Controlling machine operation with respect to consumable accessory units |
GB8816982D0 (en) * | 1988-07-16 | 1988-08-17 | Probus Biomedical Ltd | Bio-fluid assay apparatus |
GB9125603D0 (en) * | 1991-12-02 | 1992-01-29 | Gec-Marconi Limited | Optical analysis system and positioning apparatus therefor |
CA2132959C (en) * | 1992-03-27 | 2006-01-24 | Apparao Tayi | Automated continuous and random access analytical system and components thereof |
DE4326342A1 (de) * | 1993-08-05 | 1995-02-09 | Boehringer Mannheim Gmbh | Verfahren zur Analyse von Probenflüssigkeiten |
US5741462A (en) * | 1995-04-25 | 1998-04-21 | Irori | Remotely programmable matrices with memories |
US6329139B1 (en) * | 1995-04-25 | 2001-12-11 | Discovery Partners International | Automated sorting system for matrices with memory |
DE19709348C2 (de) * | 1996-05-29 | 1999-07-01 | Schubert Walter Dr Md | Automatisches Multi-Epitop-Ligand-Kartierungsverfahren |
US6083763A (en) * | 1996-12-31 | 2000-07-04 | Genometrix Inc. | Multiplexed molecular analysis apparatus and method |
CA2280794A1 (en) * | 1997-02-20 | 1998-08-27 | The Regents Of The University Of California | Plasmon resonant particles, methods and apparatus |
NZ501776A (en) * | 1997-07-22 | 2001-10-26 | Qiagen Genomics Inc | Spring probe and methods for arraying oligonucleotide and thickening agent to a solid support |
US6207031B1 (en) * | 1997-09-15 | 2001-03-27 | Whitehead Institute For Biomedical Research | Methods and apparatus for processing a sample of biomolecular analyte using a microfabricated device |
WO2000066269A1 (en) * | 1999-05-03 | 2000-11-09 | Ljl Biosystems, Inc. | Integrated sample-processing system |
FR2786876B1 (fr) * | 1998-12-03 | 2001-08-31 | Nicolas Bara | Enceinte refrigeree pour le stockage d'articles pourvue de moyens de controle du contenu de l'enceinte |
JP4608043B2 (ja) * | 1999-09-24 | 2011-01-05 | オリンパス株式会社 | 顕微鏡用焦点検出装置 |
US6362004B1 (en) * | 1999-11-09 | 2002-03-26 | Packard Biochip Technologies, Llc | Apparatus and method for using fiducial marks on a microarray substrate |
JP3736278B2 (ja) * | 2000-04-12 | 2006-01-18 | 松下電器産業株式会社 | 生化学物質の観察方法 |
-
2003
- 2003-05-28 EP EP03736749A patent/EP1508028A4/de not_active Withdrawn
- 2003-05-28 WO PCT/US2003/016905 patent/WO2003100380A2/en active Application Filing
- 2003-05-28 EP EP03755528A patent/EP1508029A4/de not_active Withdrawn
- 2003-05-28 EP EP03736805A patent/EP1508048A4/de not_active Withdrawn
- 2003-05-28 EP EP03731464A patent/EP1508027A4/de not_active Ceased
- 2003-05-28 WO PCT/US2003/017073 patent/WO2003100474A2/en active Application Filing
Patent Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5582798A (en) * | 1995-02-23 | 1996-12-10 | Cyberlab Inc. | Volume sensing device |
EP0972744A2 (de) * | 1998-07-14 | 2000-01-19 | Bayer Corporation | Automatischer Stopfenentferner |
Non-Patent Citations (1)
Title |
---|
See also references of WO03100442A1 * |
Also Published As
Publication number | Publication date |
---|---|
EP1508028A2 (de) | 2005-02-23 |
WO2003100380A2 (en) | 2003-12-04 |
EP1508027A2 (de) | 2005-02-23 |
WO2003100474A3 (en) | 2004-10-21 |
WO2003100474A2 (en) | 2003-12-04 |
EP1508029A1 (de) | 2005-02-23 |
EP1508048A4 (de) | 2009-11-04 |
EP1508027A4 (de) | 2009-04-22 |
EP1508028A4 (de) | 2009-05-20 |
EP1508029A4 (de) | 2010-04-14 |
WO2003100380A3 (en) | 2004-08-12 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
JP4652049B2 (ja) | 自動解析装置用レベル制御ピペット | |
US7429360B2 (en) | Level-controlled pipette for automated analytic devices | |
US8858718B2 (en) | Plate washing system with ultrasonic cleaning of pipes and a control method thereof | |
EP1508048A1 (de) | Niveau-kontrollierte pipette für automatische analysevorrichtungen | |
JP2969935B2 (ja) | 液定量取出し装置 | |
US4399711A (en) | Method and apparatus ensuring full volume pickup in an automated pipette | |
US8726745B2 (en) | Fluid handling device with ultrasound sensor and methods and systems using same | |
EP0109198B1 (de) | Verfahren und Vorrichtung zur messbaren Einführung eines Flüssigkeitssegmentes in eine Leitung | |
JP2005531769A (ja) | 改良された分析システム及びその構成要素 | |
JP4949389B2 (ja) | 自動分析装置 | |
WO2011030616A1 (ja) | 分注装置及び分析装置 | |
EP1562027A1 (de) | Flüssigkeitsabgabevorrichtung, automatisches Analysegerät mit ähnlicher Vorrichtung und Vorrichtung zur Detektion einer Flüssigkeitsoberfläche | |
US20060257290A1 (en) | Fluid dispenser, fluid dispensing method and assay apparatus for assay in utilizing attenuated total reflection | |
US7804599B2 (en) | Fluid volume verification system | |
US7803626B2 (en) | Automatic analyzer and method for determining abnormality in dispensing of dispensing system | |
WO2006123771A1 (ja) | 分注量検出方法および吸液モニタ型分注装置 | |
EP2042274A2 (de) | Verfahren zur Ausrichtung der Position eines mobilen Armes | |
US20090114255A1 (en) | Cleaning apparatus and automatic analyzer | |
EP1756587B1 (de) | Aspiratorsysteme mit einer als optischer niveaudetektor verwendeten aspiratorspitze und verfahren zur verwendung davon | |
JP2009250751A (ja) | 液面検知装置及び自動分析装置 | |
WO2023012713A1 (en) | Apparatus for the automated pipetting and related process |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
PUAI | Public reference made under article 153(3) epc to a published international application that has entered the european phase |
Free format text: ORIGINAL CODE: 0009012 |
|
17P | Request for examination filed |
Effective date: 20041110 |
|
AK | Designated contracting states |
Kind code of ref document: A1 Designated state(s): AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HU IE IT LI LU MC NL PT RO SE SI SK TR |
|
AX | Request for extension of the european patent |
Extension state: AL LT LV MK |
|
DAX | Request for extension of the european patent (deleted) | ||
A4 | Supplementary search report drawn up and despatched |
Effective date: 20091001 |
|
17Q | First examination report despatched |
Effective date: 20091120 |
|
STAA | Information on the status of an ep patent application or granted ep patent |
Free format text: STATUS: THE APPLICATION IS DEEMED TO BE WITHDRAWN |
|
18D | Application deemed to be withdrawn |
Effective date: 20111201 |