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CN118165078A - Bacillus subtilis source antibacterial peptide NDYT-8 and application thereof - Google Patents

Bacillus subtilis source antibacterial peptide NDYT-8 and application thereof Download PDF

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CN118165078A
CN118165078A CN202410418352.2A CN202410418352A CN118165078A CN 118165078 A CN118165078 A CN 118165078A CN 202410418352 A CN202410418352 A CN 202410418352A CN 118165078 A CN118165078 A CN 118165078A
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ndyt
antimicrobial peptide
bacillus subtilis
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resin
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赵海锋
刘东宁
程超
董佳帅
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Abstract

The invention belongs to the technical field of bioengineering, and particularly discloses a bacillus subtilis source antibacterial peptide NDYT-8 and application thereof. According to the invention, the bacillus subtilis source antibacterial peptide NDYT-8 is finally obtained through mass spectrum identification, genome data mining, database prediction and synthesis verification of bacillus subtilis fermentation metabolite, the amino acid sequence is PRKILLMVKA, the molecular weight is 1168.551 daltons, and an amphipathic alpha helical structure can be formed; the antibacterial peptide NDYT-8 provided by the invention has obvious inhibition effect on a plurality of food-borne pathogenic bacteria such as escherichia coli, staphylococcus aureus and the like, can target to destroy bacterial cell membranes, and has low hemolysis effect; the antibacterial peptide NDYT-8 provided by the invention has L-shaped amino acid, and has lower synthesis cost, so that the antibacterial peptide is expected to replace antibiotics and chemical preservatives, and has great excavation potential and application prospect in the fields of biological medicine, food, agricultural product preservation and the like.

Description

一种枯草芽孢杆菌源抗菌肽NDYT-8及其应用Bacillus subtilis-derived antimicrobial peptide NDYT-8 and its application

技术领域Technical Field

本发明属于生物工程技术领域,具体涉及一种枯草芽孢杆菌源抗菌肽NDYT-8及其应用。The invention belongs to the technical field of bioengineering, and specifically relates to a Bacillus subtilis-derived antimicrobial peptide NDYT-8 and an application thereof.

背景技术Background technique

食源性致病菌是指以食物为载体导致人体患病的一类微生物,典型的食源性致病菌包括沙门氏菌、致泻性大肠杆菌、金黄色葡萄球菌、单增李斯特菌和副溶血性弧菌等,食源性致病菌的防控是保障食品安全的刚性需求。目前,防控食源性致病菌常用的方法是添加化学防腐剂,然而,越来越多的研究表明使用化学防腐剂存在极大的安全隐患,开发绿色、安全、高效的天然防腐剂越来越迫切,在食品行业中研究最为深入的天然防腐剂是乳酸链球菌素(Nisin),Nisin已被美国食品药品监管局批准用作食品添加剂,也是我国批准使用的天然食品防腐剂之一,但Nisin仅能抑制革兰氏阳性菌,对革兰氏阴性菌和真菌没有活性;Nisin的抗菌活性也不稳定,只适用于酸性环境;这些均大大限制了Nisin在食品工业中的应用。因此,开发广谱天然防腐剂,增进其抑菌稳定性和适用范围是当今亟待解决的问题。Foodborne pathogens refer to a type of microorganisms that cause human illness by using food as a carrier. Typical foodborne pathogens include Salmonella, diarrheagenic Escherichia coli, Staphylococcus aureus, Listeria monocytogenes and Vibrio parahaemolyticus. The prevention and control of foodborne pathogens is a rigid demand for ensuring food safety. At present, the common method for preventing and controlling foodborne pathogens is to add chemical preservatives. However, more and more studies have shown that the use of chemical preservatives has great safety hazards. The development of green, safe and efficient natural preservatives is becoming more and more urgent. The most in-depth natural preservative studied in the food industry is nisin. Nisin has been approved by the US Food and Drug Administration as a food additive and is also one of the natural food preservatives approved for use in my country. However, Nisin can only inhibit Gram-positive bacteria and has no activity against Gram-negative bacteria and fungi; Nisin's antibacterial activity is also unstable and is only suitable for acidic environments; these have greatly limited the application of Nisin in the food industry. Therefore, the development of broad-spectrum natural preservatives and the enhancement of their antibacterial stability and scope of application are issues that need to be addressed today.

抗菌肽(Antimicrobial peptides,AMPs)是一类具有较强阳离子特征的小分子多肽,也被称为阳离子宿主防御肽,广泛存在于细菌、动物、植物体内,序列仅由几个到几十个氨基酸组成,作为新兴崛起的一类天然生物防腐剂,抗菌肽具有独特的膜破坏机制:大多数抗菌肽都同时具有阳离子及疏水氨基酸残基,从而使其在极性生物体环境下具有两亲性,进而可以与细菌细胞膜上的负电荷通过静电作用快速的裂解细菌,也正因为它独特的作用机制,受到细菌耐药性影响概率极小。并且,与细菌带负电细胞膜不同,哺乳动物的正常细胞表面主要由带中性电荷的磷脂组成,所以抗菌肽只会选择性杀伤细菌而不会损害正常细胞。因此抗菌肽因其广谱抑菌性、强生物相容性等特点而被认为是具有极大挖掘潜力的天然防腐剂。Antimicrobial peptides (AMPs) are a class of small molecule polypeptides with strong cationic characteristics, also known as cationic host defense peptides. They are widely found in bacteria, animals, and plants. The sequence consists of only a few to dozens of amino acids. As an emerging class of natural biological preservatives, antimicrobial peptides have a unique membrane destruction mechanism: most antimicrobial peptides have both cationic and hydrophobic amino acid residues, which makes them amphiphilic in polar biological environments, and can then quickly lyse bacteria through electrostatic interaction with negative charges on bacterial cell membranes. Because of its unique mechanism of action, it is unlikely to be affected by bacterial resistance. In addition, unlike the negatively charged cell membrane of bacteria, the surface of normal mammalian cells is mainly composed of neutrally charged phospholipids, so antimicrobial peptides will only selectively kill bacteria without damaging normal cells. Therefore, antimicrobial peptides are considered to be natural preservatives with great potential for development due to their broad-spectrum antibacterial properties and strong biocompatibility.

纳豆芽孢杆菌是从纳豆中分离出来的菌种,学科名为枯草芽孢杆菌(Bacillussubtilis natto),被FDA认证为一般认为安全(Generally Recognized as Safe,GRAS)类微生物。研究表明部分纳豆芽孢杆菌菌株具有良好的产抗菌肽类物质的能力,有望成为替代防腐剂/抗生素的安全绿色产品,极具开发前景。Bacillus subtilis natto is a strain isolated from natto, and its scientific name is Bacillus subtilis natto. It is certified by the FDA as a generally recognized as safe (GRAS) microorganism. Studies have shown that some strains of Bacillus subtilis natto have good ability to produce antimicrobial peptides, and are expected to become safe and green products that replace preservatives/antibiotics, with great development prospects.

发明内容Summary of the invention

为了克服现有技术的不足之处,提供一种全新抗菌肽,本发明的首要目的在于提供一种枯草芽孢杆菌源抗菌肽NDYT-8。In order to overcome the shortcomings of the prior art and provide a new antimicrobial peptide, the primary purpose of the present invention is to provide an antimicrobial peptide NDYT-8 derived from Bacillus subtilis.

本发明的第二目的在于提供一种枯草芽孢杆菌源抗菌肽NDYT-8的应用。The second object of the present invention is to provide an application of the antimicrobial peptide NDYT-8 derived from Bacillus subtilis.

本发明的首要目的通过如下技术方案可以实现:The primary purpose of the present invention can be achieved through the following technical solutions:

一种枯草芽孢杆菌源抗菌肽NDYT-8,其氨基酸序列如下:Pro-Arg-Lys-Ile-Leu-Leu-Met-Val-Lys-Ala,氨基酸序列的单字母缩写序列为PRKILLMVKA;A Bacillus subtilis-derived antimicrobial peptide NDYT-8, whose amino acid sequence is as follows: Pro-Arg-Lys-Ile-Leu-Leu-Met-Val-Lys-Ala, and the single-letter abbreviation sequence of the amino acid sequence is PRKILLMVKA;

所述抗菌肽NDYT-8的分子量为1168.551Da,疏水率60%,所带正电荷+3,分子式C54H101N15O11S1,平均亲水性0.61,等电点11.63,通过APD3预测该抗菌肽NDYT-8可形成α螺旋。The antimicrobial peptide NDYT-8 has a molecular weight of 1168.551 Da, a hydrophobicity of 60%, a positive charge of +3, a molecular formula of C 54 H 101 N 15 O 11 S 1 , an average hydrophilicity of 0.61, an isoelectric point of 11.63, and is predicted by APD3 to form an alpha helix.

优选地,所述枯草芽孢杆菌源抗菌肽NDYT-8包含用于编码抗菌肽NDYT-8的核酸片段。Preferably, the Bacillus subtilis-derived antimicrobial peptide NDYT-8 comprises a nucleic acid fragment encoding the antimicrobial peptide NDYT-8.

优选地,所述用于编码抗菌肽NDYT-8的核酸序列片段如下:Preferably, the nucleic acid sequence fragment encoding the antimicrobial peptide NDYT-8 is as follows:

ATTGAAGAATTTGTCCAATCCTTGGAAACAATTGAAGAATTTGTCCAATCCTTGGAAACA

CCGCGCAAAATCTTATTAATGGTTAAAGCGCCGCGCAAAATCTTATTAATGGTTAAAGCG

GGAACTGCAACAGATGCGACAATTCAATCTGGAACTGCAACAGATGCGACAATTCAATCT

CTTCTTCCTCATCTAGAGAAGGATGATATT(SEQ ID NO:2)。CTTCTTCCTCATCTAGAGAAGGATGATATT (SEQ ID NO: 2).

优选地,所述枯草芽孢杆菌源抗菌肽NDYT-8的制备方法,包括如下步骤:Preferably, the method for preparing the Bacillus subtilis-derived antimicrobial peptide NDYT-8 comprises the following steps:

采用固相化学合成法通过多肽合成仪得到肽树脂,将得到的肽树脂经过三氟乙酸切割后,得到抗菌肽NDYT-8;经过反相高效液相色谱纯化后,即完成枯草芽孢杆菌源抗菌肽NDYT-8的制备。The peptide resin was obtained by solid phase chemical synthesis through a peptide synthesizer, and the obtained peptide resin was cut with trifluoroacetic acid to obtain the antimicrobial peptide NDYT-8; after purification by reverse phase high performance liquid chromatography, the preparation of the Bacillus subtilis-derived antimicrobial peptide NDYT-8 was completed.

优选地,所述枯草芽孢杆菌源抗菌肽NDYT-8的制备方法,具体步骤如下:Preferably, the preparation method of the Bacillus subtilis-derived antimicrobial peptide NDYT-8 comprises the following specific steps:

(1)、称取2-氯三苯甲基氯树脂(2-CTC resin),于反应器中用二氯甲烷溶胀半小时,抽干,DMF(N,N-二甲基甲酰胺)清洗3次;(1) Weigh 2-chlorotrityl chloride resin (2-CTC resin), swell it with dichloromethane in a reactor for half an hour, drain it, and wash it with DMF (N,N-dimethylformamide) three times;

(2)、取1eq的Fmoc-Ala-OH(N-芴甲氧羰基-丙氨酸),DMF(N,N-二甲基甲酰胺)做溶剂,1.5eq的DIEA(N,N-二异丙基乙胺)催化反应到树脂上,抽掉反应液,DMF清洗6次;(2) Take 1 eq of Fmoc-Ala-OH (N-fluorenylmethoxycarbonyl-alanine) and DMF (N,N-dimethylformamide) as solvent, and 1.5 eq of DIEA (N,N-diisopropylethylamine) to catalyze the reaction on the resin, remove the reaction solution, and wash with DMF 6 times;

(3)、甲醇+DIEA将树脂封头1h,DMF清洗6次;(3) Seal the resin with methanol + DIEA for 1 hour and wash with DMF 6 times;

(4)、20%哌啶的DMF溶液脱除Fmoc(氨基酸保护基团),DMF清洗8次;(4) Remove Fmoc (amino acid protecting group) with 20% piperidine in DMF solution and wash with DMF 8 times;

(5)、3eq的Fmoc-Lys(Boc)-OH(叔丁氧羰基-芴甲氧羰基-赖氨酸),DMF做溶剂,3eqDIC+HoBT(N,N'-二异丙基碳二亚胺+1-羟基苯并三氮唑)与树脂反应,抽干,清洗;(5) 3eq of Fmoc-Lys(Boc)-OH (tert-butyloxycarbonyl-fluorenylmethoxycarbonyl-lysine), DMF as solvent, 3eq of DIC+HoBT (N,N'-diisopropylcarbodiimide+1-hydroxybenzotriazole) react with the resin, drain and wash;

(6)、20%哌啶的DMF溶液脱除氨基酸保护基团,清洗;(6) Remove the amino acid protecting groups with 20% piperidine in DMF solution and wash;

(7)、按照氨基酸顺序,重复步骤5-6,直到接完N端的Pro,并脱除N端的Fmoc;(7) Repeat steps 5-6 according to the amino acid sequence until the N-terminal Pro is attached and the N-terminal Fmoc is removed;

(8)、将反应结束的树脂清洗后,抽干;(8) After the reaction is completed, wash the resin and drain it;

(9)、95%TFA+2%Tis(三异丙基氯硅烷)+2%EDT(1,2-乙二硫醇)+1%H2O切割裂解树脂,乙醚沉降洗涤,得到粗品;(9), 95% TFA + 2% Tis (triisopropylsilyl chloride) + 2% EDT (1,2-ethanedithiol) + 1% H 2 O to cut and cleave the resin, and wash with ether to obtain a crude product;

(10)、高效液相色谱纯化分离粗品,得到纯品;(10) purifying and separating the crude product by high performance liquid chromatography to obtain a pure product;

(11)、冻干,检测。(11) Freeze-drying and testing.

本发明的第二目的通过如下技术方案可以实现:The second object of the present invention can be achieved by the following technical solutions:

一种枯草芽孢杆菌源抗菌肽NDYT-8在抗菌药物或食品防腐剂中的应用。The invention discloses an application of an antimicrobial peptide NDYT-8 derived from Bacillus subtilis in antimicrobial drugs or food preservatives.

具体地,所述枯草芽孢杆菌源抗菌肽NDYT-8在抑制和/或杀灭大肠杆菌、副溶血性弧菌、金黄色葡萄球菌、肠炎沙门氏菌中的一种或多种抗菌药物中的应用。Specifically, the Bacillus subtilis-derived antimicrobial peptide NDYT-8 is used in inhibiting and/or killing one or more antimicrobial drugs of Escherichia coli, Vibrio parahaemolyticus, Staphylococcus aureus, and Salmonella enteritidis.

具体地,所述枯草芽孢杆菌源抗菌肽NDYT-8在抑制和/或杀灭大肠杆菌、副溶血性弧菌、金黄色葡萄球菌、肠炎沙门氏菌中的一种或多种食品防腐剂中的应用。Specifically, the Bacillus subtilis-derived antimicrobial peptide NDYT-8 is used in inhibiting and/or killing one or more food preservatives of Escherichia coli, Vibrio parahaemolyticus, Staphylococcus aureus, and Salmonella enteritidis.

相对于现有技术,本发明具有如下有益效果:Compared with the prior art, the present invention has the following beneficial effects:

本发明所述抗菌肽NDYT-8针对大肠杆菌、金黄色葡萄球菌等多种食源性致病菌具有明显的抑制作用,且具有低溶血性、高稳定性等优势,该抗菌肽筛选自FDA认证“一般认为安全(Generally Recognized as Safe,GRAS)”类微生物,安全性有保证,此外本发明提供的抗菌肽NDYT-8氨基酸均为L构型,合成成本较低,因此有望替代抗生素及化学防腐剂,在生物医药和食品、农产品防腐保鲜等领域具有重大挖掘潜力和应用价值。本发明抗菌肽NDYT-8可被制成抗菌药物或食品防腐剂用于防控大肠杆菌、副溶血性弧菌、金黄色葡萄球菌、肠炎沙门氏菌。The antimicrobial peptide NDYT-8 of the present invention has a significant inhibitory effect on a variety of foodborne pathogens such as Escherichia coli and Staphylococcus aureus, and has the advantages of low hemolysis and high stability. The antimicrobial peptide is screened from FDA-certified "Generally Recognized as Safe (GRAS)" microorganisms, and its safety is guaranteed. In addition, the amino acids of the antimicrobial peptide NDYT-8 provided by the present invention are all L-configuration, and the synthesis cost is low. Therefore, it is expected to replace antibiotics and chemical preservatives, and has great potential for exploration and application value in the fields of biomedicine, food, and agricultural product preservation. The antimicrobial peptide NDYT-8 of the present invention can be made into an antimicrobial drug or food preservative for the prevention and control of Escherichia coli, Vibrio parahaemolyticus, Staphylococcus aureus, and Salmonella enteritidis.

附图说明BRIEF DESCRIPTION OF THE DRAWINGS

为了更清楚地说明本发明实施例或现有技术中的技术方案,下面将对实施例中所需要使用的附图作简单地介绍。In order to more clearly illustrate the embodiments of the present invention or the technical solutions in the prior art, the drawings required to be used in the embodiments are briefly introduced below.

图1为抗菌肽NDYT-8helical wheel图;Figure 1 is a diagram of the antimicrobial peptide NDYT-8 helical wheel;

图2为固相合成抗菌肽NDYT-8的高效液相色谱图;FIG2 is a high performance liquid chromatogram of solid phase synthesis antimicrobial peptide NDYT-8;

图3为固相合成抗菌肽NDYT-8的电喷雾电离质谱(ESI-MS)图;FIG3 is an electrospray ionization mass spectrometry (ESI-MS) diagram of solid phase synthesized antimicrobial peptide NDYT-8;

图4为抗菌肽NDYT-8对大肠杆菌ATCC25922的抑菌效果图;FIG4 is a graph showing the antibacterial effect of the antimicrobial peptide NDYT-8 on Escherichia coli ATCC25922;

图5为抗菌肽NDYT-8对大肠杆菌ATCC25922杀菌曲线图;FIG5 is a graph showing the sterilization curve of the antimicrobial peptide NDYT-8 against Escherichia coli ATCC25922;

图6为抗菌肽NDYT-8对小鼠红细胞的溶血作用实验结果图。FIG. 6 is a graph showing the results of an experiment on the hemolytic effect of the antimicrobial peptide NDYT-8 on mouse erythrocytes.

具体实施方式Detailed ways

为更好地说明本发明的目的、技术方案和优点,下面将结合具体实施例对本发明作进一步详细的描述。此处所描述的具体实施例仅用以解释本发明,并不用于限定本发明。In order to better illustrate the purpose, technical solution and advantages of the present invention, the present invention will be further described in detail below in conjunction with specific embodiments. The specific embodiments described herein are only used to explain the present invention and are not used to limit the present invention.

实施例中所用的试验方法如无特殊说明,均为常规方法;所用的材料、试剂等,如无特殊说明,均可从商业途径得到。Unless otherwise specified, the experimental methods used in the examples are all conventional methods; the materials, reagents, etc. used, unless otherwise specified, can be obtained from commercial channels.

实施例1:抗菌肽NDYT-8的筛选Example 1: Screening of antimicrobial peptide NDYT-8

结合枯草芽孢杆菌纳豆亚种ND107105的全基因组序列(CP121266.1)及其抗菌代谢产物的质谱鉴定,通过抗菌肽预测网站APD3(https://aps.unmc.edu/)和DRAMPDatabase(http://dramp.cpu-bioinfor.org/)筛选抗菌活性概率高于99%及具备α-螺旋结构且氨基酸个数在15以内的阳离子短肽,进一步通过DBAASP数据库(https://dbaasp.org/tools?page=linear-amp-prediction)基于“聚类”方法和AI学习方法筛选对金黄色葡萄球菌ATCC25923和大肠杆菌ATCC25922抑菌活性呈阳性的肽段。通过此方法获取包括抗菌肽NDYT-8在内的数条短肽序列,化学合成纯度高于95%的该短肽。Combined with the whole genome sequence (CP121266.1) of Bacillus subtilis natto subspecies ND107105 and the mass spectrometry identification of its antibacterial metabolites, the antimicrobial peptide prediction website APD3 (https://aps.unmc.edu/) and DRAMPDatabase (http://dramp.cpu-bioinfor.org/) were used to screen cationic short peptides with an antibacterial activity probability higher than 99%, an α-helical structure and less than 15 amino acids. The DBAASP database (https://dbaasp.org/tools?page=linear-amp-prediction) was further used to screen peptides with positive antibacterial activity against Staphylococcus aureus ATCC25923 and Escherichia coli ATCC25922 based on the "clustering" method and AI learning method. Several short peptide sequences including the antimicrobial peptide NDYT-8 were obtained by this method, and the short peptide with a chemical synthesis purity higher than 95% was obtained.

本发明所述抗菌肽NDYT-8为源于枯草芽孢杆菌纳豆亚种的天然抗菌肽。结合代谢产物质谱鉴定和抗菌肽数据库分析预测,从枯草芽孢杆菌纳豆亚种天然基因组中筛选出了高效、广谱的新型抗菌肽NDYT-8。本发明提供的抗菌肽NDYT-8有10个氨基酸残基,其氨基酸序列具体为:Pro-Arg-Lys-Ile-Leu-Leu-Met-Val-Lys-Ala,氨基酸序列的单字母缩写序列为PRKILLMVKA,抗菌肽NDYT-8的分子量为1168.551Da,疏水率60%,总静电荷+3,分子式C54H101N15O11S1,平均亲水性0.61,等电点11.63。本发明所述抗菌肽NDYT-8针对革兰氏阳性菌致病菌和革兰氏阴性致病菌均具有显著的抑菌活性,且具有低溶血性、高稳定性且高效等优势,该抗菌肽筛选自FDA认证“一般认为安全(Generally Recognized as Safe,GRAS)”类微生物,安全性有保证,有望替代抗生素及化学防腐剂,在生物医药和食品、农产品防腐保鲜等领域具有重大挖掘潜力和应用价值。The antimicrobial peptide NDYT-8 of the present invention is a natural antimicrobial peptide derived from Bacillus subtilis natto subspecies. Combining metabolite mass spectrometry identification and antimicrobial peptide database analysis and prediction, a novel antimicrobial peptide NDYT-8 with high efficiency and broad spectrum was screened out from the natural genome of Bacillus subtilis natto subspecies. The antimicrobial peptide NDYT-8 provided by the present invention has 10 amino acid residues, and its amino acid sequence is specifically: Pro-Arg-Lys-Ile-Leu-Leu-Met-Val-Lys-Ala, and the single-letter abbreviation sequence of the amino acid sequence is PRKILLMVKA. The molecular weight of the antimicrobial peptide NDYT-8 is 1168.551Da, the hydrophobicity is 60%, the total electrostatic charge is +3, the molecular formula is C 54 H 101 N 15 O 11 S 1 , the average hydrophilicity is 0.61, and the isoelectric point is 11.63. The antimicrobial peptide NDYT-8 of the present invention has significant antibacterial activity against both Gram-positive pathogenic bacteria and Gram-negative pathogenic bacteria, and has the advantages of low hemolysis, high stability and high efficiency. The antimicrobial peptide is screened from FDA-certified "Generally Recognized as Safe (GRAS)" microorganisms, and its safety is guaranteed. It is expected to replace antibiotics and chemical preservatives, and has great potential for development and application value in the fields of biomedicine, food, and agricultural product preservation.

实施例2:实施例1所述抗菌肽NDYT-8的制备方法Example 2: Preparation method of the antimicrobial peptide NDYT-8 described in Example 1

采用固相化学合成法合成抗菌肽NDYT-8:抗菌肽NDYT-8的制备从C端到N端逐一进行,通过多肽合成仪来完成,具体步骤如下:The antimicrobial peptide NDYT-8 was synthesized by solid phase chemical synthesis: the preparation of the antimicrobial peptide NDYT-8 was carried out one by one from the C-terminus to the N-terminus by a peptide synthesizer, and the specific steps are as follows:

(1)、称取2-CTC树脂,于反应器中用DCM溶胀0.5h,抽干,DMF清洗3次;(1) Weigh 2-CTC resin, swell it with DCM in a reactor for 0.5 h, drain it, and wash it with DMF three times;

(2)、取1eq的Fmoc-Ala-OH,DMF做溶剂,1.5eq的DIEA催化反应到树脂上,抽掉反应液,DMF清洗6次;(2) Take 1 eq of Fmoc-Ala-OH, use DMF as solvent, and catalyze the reaction on the resin with 1.5 eq of DIEA. Draw off the reaction solution and wash with DMF 6 times.

(3)、甲醇+DIEA将树脂封头1h,DMF清洗6次;(3) Seal the resin with methanol + DIEA for 1 hour and wash with DMF 6 times;

(4)、20%哌啶的DMF溶液脱除Fmoc,DMF清洗8次;(4) Remove Fmoc with 20% piperidine in DMF solution and wash with DMF 8 times;

(5)、3eq的Fmoc-Lys(Boc)-OH,DMF做溶剂,3eq(DIC+HoBT)与树脂反应,抽干,清洗;(5) 3eq of Fmoc-Lys(Boc)-OH, DMF as solvent, 3eq (DIC+HoBT) reacted with the resin, drained, and washed;

(6)、20%哌啶的DMF溶液脱除Fmoc,清洗;(6) Remove Fmoc with 20% piperidine in DMF solution and wash;

(7)、按照氨基酸P-R-K-I-L-L-M-V-K-A顺序,重复步骤(5)-(6)从C端合成到N端,直到接完N端的Pro,并脱除N端的Fmoc;得到脱去Fmoc基团的侧链保护的树脂;(7) Repeat steps (5) to (6) from the C-terminus to the N-terminus in the order of amino acids P-R-K-I-L-L-M-V-K-A until the Pro at the N-terminus is connected and the Fmoc at the N-terminus is removed; and a resin with the side chain protection of the Fmoc group removed is obtained;

(8)、将反应结束的树脂清洗后,抽干;(8) After the reaction is completed, wash the resin and drain it;

(9)、在上述得到的肽树脂中,加入切割试剂,95%TFA(三氟乙酸)+2%Tis(三异丙基氯硅烷)+2%EDT+1%H2O切割裂解树脂,乙醚沉降洗涤,得到多肽粗品;(9) Add a cleavage reagent to the peptide resin obtained above, 95% TFA (trifluoroacetic acid) + 2% Tis (triisopropylsilyl chloride) + 2% EDT + 1% H 2 O to cleave the resin, and wash with ether precipitation to obtain a crude polypeptide;

(10)、用15%ACN溶液溶解多肽,洗脱液A为0.1%TFA/水溶液;洗脱液B为0.1%TFA/乙腈溶液,洗脱浓度为10%~70%,洗脱时间为30min,检测波长为220nm,流速为1mL/min,收集主峰,冻干;得到纯化抗菌肽NDYT-8(如图2所示);(10) Dissolve the peptide in 15% ACN solution, eluent A is 0.1% TFA/water solution; eluent B is 0.1% TFA/acetonitrile solution, the elution concentration is 10% to 70%, the elution time is 30 min, the detection wavelength is 220 nm, the flow rate is 1 mL/min, collect the main peak, and freeze-dry; obtain the purified antimicrobial peptide NDYT-8 (as shown in Figure 2);

(11)、抗菌肽NDYT-8的鉴定:将上述得到的抗菌肽NDYT-8经过电喷雾质谱法分析,理论分子量与实测分子量基本一致,抗菌肽NDYT-8的纯度大于95%(如图3所示)。(11) Identification of antimicrobial peptide NDYT-8: The antimicrobial peptide NDYT-8 obtained above was analyzed by electrospray ionization mass spectrometry. The theoretical molecular weight was basically consistent with the measured molecular weight. The purity of the antimicrobial peptide NDYT-8 was greater than 95% (as shown in FIG3 ).

实施例3:抗菌肽NDYT-8抑菌活性测定Example 3: Determination of antibacterial activity of antimicrobial peptide NDYT-8

通过微量二倍稀释法对抗菌肽NDYT-8的抑菌活性进行检测。测定最小抑菌浓度,即能够抑制细菌生长、繁殖的最低药物浓度。本实施例中所涉及到的菌株包括革兰氏阳性致病菌金黄色葡萄球菌ATCC 29213、单核增生李斯特菌ATCC 19115;革兰氏阴性致病菌大肠杆菌ATCC 25922、肠炎沙门氏菌ATCC 14028、副溶血性弧菌ATCC 17802;The antibacterial activity of the antimicrobial peptide NDYT-8 was detected by the micro-two-fold dilution method. The minimum inhibitory concentration, that is, the lowest drug concentration that can inhibit bacterial growth and reproduction, was determined. The strains involved in this embodiment include Gram-positive pathogenic bacteria Staphylococcus aureus ATCC 29213, Listeria monocytogenes ATCC 19115; Gram-negative pathogenic bacteria Escherichia coli ATCC 25922, Salmonella enteritidis ATCC 14028, Vibrio parahaemolyticus ATCC 17802;

用LB培养基将指示菌培养至指数生长期,用MH培养基稀释菌液,调整浓度为107CFU/mL,分装90μL菌液/孔至96孔板中;Use LB medium to culture the indicator bacteria to the exponential growth phase, dilute the bacterial solution with MH medium to adjust the concentration to 107 CFU/mL, and dispense 90 μL of the bacterial solution/well into a 96-well plate;

使用DMSO溶解抗菌肽NDYT-8(4mg/mL),用MH培养基梯度稀释菌肽NDYT-8至(2-1000μg/mL),根据浓度梯度依次加入90μL至含有待测菌液的96孔培养板中,每个浓度设置三个孔重复;90μL无菌PBS+90μL MH培养基作为阴性空白对照,90μL MH培养基+90μL细菌悬液为阳性空白对照。Use DMSO to dissolve the antimicrobial peptide NDYT-8 (4 mg/mL), use MH medium to gradient dilute the antimicrobial peptide NDYT-8 to (2-1000 μg/mL), add 90 μL to the 96-well culture plate containing the bacterial solution to be tested according to the concentration gradient, and set three wells for each concentration; 90 μL sterile PBS + 90 μL MH medium is used as a negative blank control, and 90 μL MH medium + 90 μL bacterial suspension is used as a positive blank control.

将96孔板置于37℃,160rpm恒温培养摇床中培养24h;The 96-well plate was placed in a constant temperature incubator at 37°C and 160 rpm for 24 h;

使用酶标仪检测菌液在600nm处的光吸收值,以检测不到细菌生长的孔和相邻孔的样品浓度的平均值作为作为最小抑菌浓度(MIC)。The light absorption value of the bacterial solution at 600 nm was detected using an ELISA instrument, and the average value of the sample concentrations of the well where no bacterial growth was detected and the adjacent wells was taken as the minimum inhibitory concentration (MIC).

经三次重复实验验证抗菌肽NDYT-8对多种食源性致病菌的抑菌活性如下表所示,其MIC值在16~128μg/mL。抗菌肽NDYT-8对革兰氏阴性菌的抑菌活性相对较强,其MIC值小于40μg/mL。The antibacterial activity of the antimicrobial peptide NDYT-8 against a variety of foodborne pathogens was verified by three repeated experiments as shown in the following table, and its MIC value was 16-128 μg/mL. The antibacterial activity of the antimicrobial peptide NDYT-8 against Gram-negative bacteria was relatively strong, and its MIC value was less than 40 μg/mL.

实施例4:抗菌肽NDYT-8抑制细菌生长曲线测定Example 4: Determination of the antibacterial peptide NDYT-8 inhibition of bacterial growth curve

本实施例中所涉及到的菌株为革兰氏阳性菌金黄色葡萄球菌(Staphylococcusaureus subsp.Aureus)ATCC 29213和革兰氏阴性菌大肠杆菌(Escherichia coli)ATCC25922。The strains involved in this example are Gram-positive bacteria Staphylococcus aureus subsp. Aureus ATCC 29213 and Gram-negative bacteria Escherichia coli ATCC 25922.

将待测细菌置于LB培养基,37℃,220rpm条件下培养12h;1:100转接于MH培养基中,37℃,220rpm继续培养2.5h,;MH培养基稀释菌液至OD600=0.1;The bacteria to be tested were placed in LB medium and cultured at 37°C and 220 rpm for 12 h; then transferred to MH medium at a ratio of 1:100 and cultured for another 2.5 h at 37°C and 220 rpm; the bacterial solution was diluted with MH medium to OD600 = 0.1;

取150μL MH培养基于96孔板中,每孔分别加入10μL待测菌液,依次加入终浓度为0MIC,1MIC,3MIC,5MIC的抗菌肽NDYT-8,混匀,至于酶标仪中,37℃培养,每2h测量OD600读数,测量至10h;绘制生长曲线。Take 150 μL MH culture medium and put it into a 96-well plate. Add 10 μL of the test bacterial solution to each well. Add the antimicrobial peptide NDYT-8 with final concentrations of 0 MIC, 1 MIC, 3 MIC, and 5 MIC in sequence, mix well, put it into a microplate reader, culture at 37°C, measure the OD600 reading every 2 hours, and measure until 10 hours; draw a growth curve.

结果如图5所示,三次重复实验显示随着抗菌肽NDYT-8浓度的增加,细菌生长被抑制,当抗菌肽浓度增加至3MIC(50-200μg/mL)时,大肠杆菌及金黄色葡萄球菌生长被显著抑制。The results are shown in FIG5 . Three repeated experiments showed that as the concentration of the antimicrobial peptide NDYT-8 increased, bacterial growth was inhibited. When the concentration of the antimicrobial peptide increased to 3MIC (50-200 μg/mL), the growth of Escherichia coli and Staphylococcus aureus was significantly inhibited.

实施例5:抗菌肽NDYT-8对新鲜小鼠红细胞的溶血活性Example 5: Hemolytic activity of antimicrobial peptide NDYT-8 on fresh mouse erythrocytes

取新鲜小鼠血液,于离心管中以1000rpm离心10min,然后去上清液取下层红细胞沉淀,加入PBS洗涤两次,再次以1000rpm离心10min去上清液,最后在离心管中加入生理盐水制备含有6%(v/v)红细胞的细胞悬液,分装100μL/孔至96孔板中;Fresh mouse blood was collected and centrifuged at 1000 rpm for 10 min in a centrifuge tube. The supernatant was removed and the red blood cell sediment was taken out. PBS was added to wash twice, and the supernatant was removed again by centrifugation at 1000 rpm for 10 min. Finally, physiological saline was added to the centrifuge tube to prepare a cell suspension containing 6% (v/v) red blood cells, and 100 μL/well was dispensed into a 96-well plate.

用PBS缓冲液(pH 7.4)配备不同浓度梯度的抗菌肽(0μg/mL,40μg/mL,100μg/mL,200μg/mL);其中以PBS溶液作为阴性对照组,以多粘菌素(200μg/mL)作为阳性对照。PBS buffer (pH 7.4) was prepared with different concentration gradients of antimicrobial peptides (0 μg/mL, 40 μg/mL, 100 μg/mL, 200 μg/mL); PBS solution was used as the negative control group, and polymyxin (200 μg/mL) was used as the positive control.

加入100μL抗菌肽和阳性对照至含有小鼠血液的96孔板中;37℃培养60min;Add 100 μL of antimicrobial peptides and positive controls to a 96-well plate containing mouse blood; incubate at 37°C for 60 min;

取出96孔板,离心(3000×g,5min,4℃),转移上清液100μL至新的96孔板,使用酶标仪通过测量540nm处的吸光度来评估上清液中的血红蛋白释放。The 96-well plate was removed and centrifuged (3000×g, 5 min, 4°C), 100 μL of the supernatant was transferred to a new 96-well plate, and the hemoglobin release in the supernatant was evaluated by measuring the absorbance at 540 nm using a microplate reader.

如图6所示,三次重复实验显示抗菌肽溶液与小鼠红细胞悬浮液经孵育,OD540检测结果表明,与对照组相比,抗菌肽NDYT-8在浓度达到200μg/mL时未造成红细胞发生明显溶血现象,安全性较高。As shown in Figure 6, three repeated experiments showed that the antimicrobial peptide solution was incubated with the mouse red blood cell suspension. The OD540 test results showed that compared with the control group, the antimicrobial peptide NDYT-8 did not cause obvious hemolysis of red blood cells when the concentration reached 200 μg/mL, and was relatively safe.

综上所述,本发明提供了一种抗菌肽NDYT-8,氨基酸序列如SEQ ID NO.1所示,具体为PRKILLMVKA。In summary, the present invention provides an antimicrobial peptide NDYT-8, the amino acid sequence of which is shown in SEQ ID NO.1, specifically PRKILLMVKA.

本发明提供的抗菌肽NDYT-8是可以形成双亲性α螺旋结构的短序列,包含10个氨基酸,分子量为1168.551道尔顿,为直链多肽,所有氨基酸均为L型。体外抑菌实验表明,抗菌肽NDYT-8具有广谱抗菌活性,对金黄色葡萄球菌、单核增生李斯特菌、肠炎沙门氏菌和副溶血性弧菌的标准菌株均表现较好的抗菌作用,最小抑菌浓度(MIC)值为16μg/mL;同时溶血作用较低。The antimicrobial peptide NDYT-8 provided by the present invention is a short sequence that can form an amphipathic α-helical structure, contains 10 amino acids, has a molecular weight of 1168.551 Daltons, is a straight-chain polypeptide, and all amino acids are L-type. In vitro antibacterial experiments show that the antimicrobial peptide NDYT-8 has a broad-spectrum antibacterial activity, and exhibits good antibacterial effects on standard strains of Staphylococcus aureus, Listeria monocytogenes, Salmonella enteritidis, and Vibrio parahaemolyticus, with a minimum inhibitory concentration (MIC) value of 16 μg/mL; at the same time, the hemolytic effect is low.

在本发明中,所述抗菌肽NDYT-8的制备方法为多肽固相合成法。本发明对所述多肽固相合成法没有特殊要求,采用本领域技术人员所熟知的方法即可。In the present invention, the preparation method of the antimicrobial peptide NDYT-8 is a polypeptide solid phase synthesis method. The present invention has no special requirements for the polypeptide solid phase synthesis method, and a method well known to those skilled in the art can be used.

上述实施例为本发明较佳的实施方式,但本发明的实施方式并不受上述实施例的限制,其他的任何未背离本发明的精神实质与原理下所作的改变、修饰、替代、组合、简化,均应为等效的置换方式,都包含在本发明的保护范围之内。The above embodiments are preferred implementation modes of the present invention, but the implementation modes of the present invention are not limited to the above embodiments. Any other changes, modifications, substitutions, combinations, and simplifications that do not deviate from the spirit and principles of the present invention should be equivalent replacement methods and are included in the protection scope of the present invention.

Claims (8)

1.一种枯草芽孢杆菌源抗菌肽NDYT-8,其特征在于,其氨基酸序列如下:1. A Bacillus subtilis-derived antimicrobial peptide NDYT-8, characterized in that its amino acid sequence is as follows: Pro-Arg-Lys-Ile-Leu-Leu-Met-Val-Lys-Ala,氨基酸序列的单字母缩写序列为PRKILLMVKA;Pro-Arg-Lys-Ile-Leu-Leu-Met-Val-Lys-Ala, the single-letter abbreviation sequence of the amino acid sequence is PRKILLMVKA; 所述抗菌肽NDYT-8的分子量为1168.551Da,疏水率60%,所带正电荷+3,分子式C54H101N15O11S1,平均亲水性0.61,等电点11.63,通过APD3预测该肽可形成α螺旋。The antimicrobial peptide NDYT-8 has a molecular weight of 1168.551 Da, a hydrophobicity of 60%, a positive charge of +3, a molecular formula of C54H101N15O11S1, an average hydrophilicity of 0.61, an isoelectric point of 11.63, and is predicted by APD3 to form an alpha helix. 2.根据权利要求1所述的枯草芽孢杆菌源抗菌肽NDYT-8,其特征在于,所述枯草芽孢杆菌源抗菌肽NDYT-8包含用于编码抗菌肽NDYT-8的核酸片段。2. The Bacillus subtilis-derived antimicrobial peptide NDYT-8 according to claim 1, characterized in that the Bacillus subtilis-derived antimicrobial peptide NDYT-8 comprises a nucleic acid fragment encoding the antimicrobial peptide NDYT-8. 3.根据权利要求1所述的枯草芽孢杆菌源抗菌肽NDYT-8,其特征在于,所述用于编码抗菌肽NDYT-8的核酸序列片段如下:3. The Bacillus subtilis-derived antimicrobial peptide NDYT-8 according to claim 1, characterized in that the nucleic acid sequence fragment encoding the antimicrobial peptide NDYT-8 is as follows: ATTGAAGAATTTGTCCAATCCTTGGAAACAATTGAAGAATTTGTCCAATCCTTGGAAACA CCGCGCAAAATCTTATTAATGGTTAAAGCGCCGCGCAAAATCTTATTAATGGTTAAAGCG GGAACTGCAACAGATGCGACAATTCAATCTGGAACTGCAACAGATGCGACAATTCAATCT CTTCTTCCTCATCTAGAGAAGGATGATATT(SEQ ID NO:2)。CTTCTTCCTCATCTAGAGAAGGATGATATT (SEQ ID NO: 2). 4.根据权利要求1至3任一项所述的枯草芽孢杆菌源抗菌肽NDYT-8,其特征在于,所述的枯草芽孢杆菌源抗菌肽NDYT-8的制备方法,包括如下步骤:4. The Bacillus subtilis-derived antimicrobial peptide NDYT-8 according to any one of claims 1 to 3, characterized in that the preparation method of the Bacillus subtilis-derived antimicrobial peptide NDYT-8 comprises the following steps: 采用固相化学合成法通过多肽合成仪得到肽树脂,将得到的肽树脂经过TFA切割后,得到抗菌肽NDYT-8;经过反相高效液相色谱纯化后,即完成枯草芽孢杆菌源抗菌肽NDYT-8的制备。The peptide resin was obtained by solid phase chemical synthesis through a peptide synthesizer, and the obtained peptide resin was cut by TFA to obtain the antimicrobial peptide NDYT-8; after purification by reverse phase high performance liquid chromatography, the preparation of the Bacillus subtilis-derived antimicrobial peptide NDYT-8 was completed. 5.根据权利要求4所述的枯草芽孢杆菌源抗菌肽NDYT-8,其特征在于,所述枯草芽孢杆菌源抗菌肽NDYT-8的制备方法,具体步骤如下:5. The Bacillus subtilis-derived antimicrobial peptide NDYT-8 according to claim 4, characterized in that the preparation method of the Bacillus subtilis-derived antimicrobial peptide NDYT-8 comprises the following specific steps: (1)、称取2-CTC树脂,于反应器中用DCM溶胀半小时,抽干,DMF清洗3次;(1) Weigh 2-CTC resin, swell it with DCM in a reactor for half an hour, drain it, and wash it with DMF three times; (2)、取1eq的Fmoc-Ala-OH,DMF做溶剂,1.5eq的DIEA催化反应到树脂上,抽掉反应液,DMF清洗6次;(2) Take 1 eq of Fmoc-Ala-OH, use DMF as solvent, and catalyze the reaction on the resin with 1.5 eq of DIEA. Draw off the reaction solution and wash with DMF 6 times. (3)、甲醇+DIEA将树脂封头1h,DMF清洗6次;(3) Seal the resin with methanol + DIEA for 1 hour and wash with DMF 6 times; (4)、20%哌啶的DMF溶液脱除Fmoc,DMF清洗8次;(4) Remove Fmoc with 20% piperidine in DMF solution and wash with DMF 8 times; (5)、3eq的Fmoc-Lys(Boc)-OH,DMF做溶剂,3eq(DIC+HoBT)与树脂反应,抽干,清洗;(5) 3eq of Fmoc-Lys(Boc)-OH, DMF as solvent, 3eq (DIC+HoBT) reacted with the resin, drained, and washed; (6)、20%哌啶的DMF溶液脱除Fmoc,清洗;(6) Remove Fmoc with 20% piperidine in DMF solution and wash; (7)、按照氨基酸顺序,重复步骤5-6,直到接完N端的Pro,并脱除N端的Fmoc;(7) Repeat steps 5-6 according to the amino acid sequence until the N-terminal Pro is attached and the N-terminal Fmoc is removed; (8)、将反应结束的树脂清洗后,抽干;(8) After the reaction is completed, the resin is washed and dried; (9)、95%TFA+2%Tis+2%EDT+1%H2O切割裂解树脂,乙醚沉降洗涤,得到粗品;(9) The resin was cut and cleaved with 95% TFA + 2% Tis + 2% EDT + 1% H 2 O, and washed with ether to obtain a crude product; (10)、高效液相色谱纯化分离粗品,得到纯品;(10) purifying and separating the crude product by high performance liquid chromatography to obtain a pure product; (11)、冻干,检测。(11) Freeze-drying and testing. 6.一种根据权利要求1至5任一项所述的枯草芽孢杆菌源抗菌肽NDYT-8的应用。6. Use of the Bacillus subtilis-derived antimicrobial peptide NDYT-8 according to any one of claims 1 to 5. 7.根据权利要求6所述的枯草芽孢杆菌源抗菌肽NDYT-8的应用,其特征在于,所述枯草芽孢杆菌源抗菌肽NDYT-8在抑制和/或杀灭大肠杆菌、副溶血性弧菌、金黄色葡萄球菌、肠炎沙门氏菌中的一种或多种抗菌药物中的应用。7. The use of the Bacillus subtilis antimicrobial peptide NDYT-8 according to claim 6, characterized in that the Bacillus subtilis antimicrobial peptide NDYT-8 is used in inhibiting and/or killing one or more antimicrobial drugs of Escherichia coli, Vibrio parahaemolyticus, Staphylococcus aureus, and Salmonella enteritidis. 8.根据权利要求6所述的枯草芽孢杆菌源抗菌肽NDYT-8的应用,其特征在于,所述枯草芽孢杆菌源抗菌肽NDYT-8在抑制和/或杀灭大肠杆菌、副溶血性弧菌、金黄色葡萄球菌、肠炎沙门氏菌中的一种或多种食品防腐剂中的应用。8. The use of the Bacillus subtilis antimicrobial peptide NDYT-8 according to claim 6, characterized in that the Bacillus subtilis antimicrobial peptide NDYT-8 is used as a food preservative to inhibit and/or kill one or more of Escherichia coli, Vibrio parahaemolyticus, Staphylococcus aureus, and Salmonella enteritidis.
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CN118324866A (en) * 2024-06-13 2024-07-12 山东大学 Marine-derived antibacterial peptide FD031 and application thereof
CN118324876A (en) * 2024-06-13 2024-07-12 青岛华大基因研究院 Marine-derived antibacterial peptide FD116 and application thereof
CN118324874A (en) * 2024-06-13 2024-07-12 山东大学 Marine-derived antibacterial peptide FD078 and application thereof
CN118324865A (en) * 2024-06-13 2024-07-12 青岛华大基因研究院 Marine-derived antibacterial peptide FD103 and application thereof

Cited By (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN118324866A (en) * 2024-06-13 2024-07-12 山东大学 Marine-derived antibacterial peptide FD031 and application thereof
CN118324876A (en) * 2024-06-13 2024-07-12 青岛华大基因研究院 Marine-derived antibacterial peptide FD116 and application thereof
CN118324874A (en) * 2024-06-13 2024-07-12 山东大学 Marine-derived antibacterial peptide FD078 and application thereof
CN118324865A (en) * 2024-06-13 2024-07-12 青岛华大基因研究院 Marine-derived antibacterial peptide FD103 and application thereof
CN118324865B (en) * 2024-06-13 2024-08-20 青岛华大基因研究院 Marine-derived antibacterial peptide FD103 and application thereof

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