Embodiment
Carrier (vector) refers to the ring-shaped DNA molecule of a kind of energy self-replacation that DNA fragmentation can be transferred in recipient cell.
Promotor (promoter) thus being defined as a kind of combination RNA polymerase and guides polysaccharase to arrive the initial DNA sequence dna of transcribing of correct transcription initiation site of encoding sequence.The assembling of the information RNA of the effective catalysis of RNA polymerase energy and coding region suitable DNA chain complementation.Promotor it is also understood that for comprise for after transcript mRNA for translating 5 ' non-coding region (between promotor and transcription initiation site), cis-effect transcriptional regulatory element, as enhanser and can with other nucleotide sequences of transcription factor interaction.
" identity " or " identity per-cent " refers to the sequence identity between two aminoacid sequences or between two nucleotide sequences.For determining the identity percentage ratio of two aminoacid sequences or two nucleic acid, with the best comparison object, sequence is compared.Identity per-cent between two sequences is the function (, the sum of the number/position of identity percentage ratio=same position (for example, lap position) × 100) of the number of the same position that had by these sequences.For example, " identity per-cent " calculates by following manner: in comparison window, compare two sequences through the best comparison, be determined at the number of the position that occurs identical nucleotide base or same amino acid residue in two sequences to produce the number of matched position, by the number of matched position divided by the overall number of position in comparison window (, the size of window), thus and result is multiplied by 100 generation sequence identity per-cents.The best comparison for sequence relatively can be undertaken by following: for example, and Smith and Waterman(Smith, T.F.andWaterman, M.S., Comparison of biosequences, Adv.Appl.Math., 1981,2,482-489) local homology's algorithm; Needleman and Wunsch(Needleman S.B.andWunsch C.D., A general method applicable to the search forsimilarities in the amino acid sequence of two proteins, J.Mol.Biol., 1970,48,443-453.) sequence analysis algorithm; Pearson and Lipman(Pearson W.R., Lipman D.J., Improved tools for biological sequence comparison, Proc.Natl.Acad.Sci., 1988,85,2444-2452.) similarity searching method; The computerize of these algorithms (is for example implemented, Wisconsin Genetics Software Package, Genetics Computer Group, 575 Science Dr., Madison, GAP, BESTFIT, FASTA, BLAST P, BLAST N and TFASTA in Wis.); Or manual comparison and visual inspection (referring to, the people such as such as Ausubel, Current Protocols in Molecular Biology(1995 supplementary issue).
Below in conjunction with specific embodiment, technological line of the present invention is described in further details.
In the present invention, plasmid extraction adopts OMEGA company Plasmid Mini Kit I test kit (D6942-01), it is to adopt the Cycle-Pure Kit of OMEGA company test kit (D6492-01) that DNA fragmentation reclaims, and it is to adopt OMEGA company Gel Extraction Kit test kit (D2500-01) that gel reclaims.Terreus CICC40205 bacterial strain is purchased from Chinese industrial microbial strains preservation administrative center.
The structure of embodiment 1 terreus cis-aconitic acid decarboxylase gene cad expression cassette
The structure of 1.1 expression vector pXH-1
Take TtrpC-F (5 '-cagacatgtagatctaagcttgcggccgcacttaacgttactgaaatc-3 ') and TtrpC-R (5 '-gtcgtgccagtcgactctaga-3 ') as primer pair, obtained by Seoul National university with plasmid pSGF957(, build plasmid map as Fig. 2, Kim, J.G., Choi, Y.D., Chang, Y.J., Kim, S.U., Genetictransformation of Monascus purpureus DSM1379, Biotechnology Letters, 2003, 25, 1509 – 1514) carry out pcr amplification TtrpC fragment for template, product is through Pci I(Fermentas, Catalog No.:#ER1871) and Xba I enzyme is cut and purifying.PgpdAt1 promoter fragment is cloned in (Takara on pMD18-simple carrier by pJJL-2, Catalog No.:D103A), then the Pci I restriction enzyme site of removing on pMD18-simple plasmid by rite-directed mutagenesis obtains (plasmid map is referring to Fig. 3), and its concrete construction process is with reference to Chinese patent: the promotor of a kind of filamentous fungus glyceraldehyde-3-phosphate dehydrogenase gene (gpd) and application thereof (application number 201210116163.7).With Pci I and Xba I, plasmid pJJL-2 is carried out to enzyme and cut, reclaim carrier segments.The pJJL-2 fragment of recovery is connected and obtains plasmid pXH-1(referring to Fig. 4 through T4 ligase enzyme with TtrpC fragment).
The clone of 1.2 terreus cis-aconitic acid decarboxylase genes
Terreus CICC40205 bacterial strain used in the present invention is purchased from Chinese industrial microbial strains preservation administrative center.The information design primer cad-F1 (5 '-gcattccatgaccaaacaatctgcggacagc-3 ') and the cad-R1(5 '-ggcggatccttataccagtggcgatttcacgg-3 ' that announce according to terreus NIH2624 genome database), take the cDNA of terreus CICC40205 as template amplification terreus cis-aconitic acid decarboxylase gene, the band that is about 1500bp through 1.0% agarose gel electrophoresis detection length is object product, object band product TA after purifying is reclaimed in rubber tapping is cloned into pMD18-T carrier (TaKaRa, Catalog No.:D101A) in, after order-checking, obtain plasmid pXH-2.Sequencing result shows that clone's DNA band is terreus cis-aconitic acid decarboxylase gene, and nucleotides sequence is classified SEQ ID NO.1 as, and corresponding aminoacid sequence is SEQ ID NO.2.Compare with the Gene A TEG_09971 of the terreus NIH2624 bacterial strain that completes gene order-checking, homology is 96%, with the homology of the people such as Kanamasa clone's cad gene (GenBank:AB326105.1) be 100%(Kanamasa, S., Dwiarti, L., Okabe, M., Park E.Y., Cloning andfunctional characterization of the cis-aconitic acid decarboxylase (CAD) gene from Aspergillus terreus.Appl.Microbiol.Biotechnol., 2008,80,223-229).
SEQ?ID?NO.1:
atgaccaaacaatctgcggacagcaacgcaaagtcaggagttacgtccgaaatatgtcattgggcatccaacctggccactgacgacatcccttcggacgtattagaaagagcaaaataccttattctcgacggtattgcatgtgcctgggttggtgcaagagtgccttggtcagagaagtatgttcaggcaacgatgagctttgagccgccgggggcctgcagggtgattggatatggacagaaactggggcctgttgcagcagccatgaccaattccgctttcatacaggctacggagcttgacgactaccacagcgaagcccccctacactctgcaagcattgtccttcctgcggtctttgcagcaagtgaggtcttagccgagcagggcaaaacaatttccggtatagatgttattctagccgccattgtggggtttgaatctggcccacggatcggcaaagcaatctacggatcggacctcttgaacaacggctggcattgtggagctgtgtatggcgctccagccggtgcgctggccacaggaaagctcctcggtctaactccagactccatggaagatgctctcggaattgcgtgcacgcaagcctgtggtttaatgtcggcgcaatacggaggcatggtaaagcgtgtgcaacacggattcgcagcgcgtaatggtcttcttgggggactgttggcccatggtgggtacgaggcaatgaaaggtgtcctggagagatcttacggcggtttcctcaagatgttcaccaagggcaacggcagagagcctccctacaaagaggaggaagtggtggctggtctcggttcattctggcatacctttactattcgcatcaagctctatgcctgctgcggacttgtccatggtccagtcgaggctatcgaaaaccttcaggggagataccccgagctcttgaatagagccaacctcagcaacattcgccatgttcatgtacagctttcaacggcctcgaacagtcactgtggatggataccagaggagagacccatcagttcaatcgcagggcagatgagtgtcgcatacattctcgccgtccagctggtcgaccagcaatgtcttttgtcccagttttctgagtttgatgacaacctggagaggccagaagtttgggatctggccaggaaggttacttcatctcaaagcgaagagtttgatcaagacggcaactgtctcagtgcgggtcgcgtgaggattgagttcaacgatggttcttctattacggaaagtgtcgagaagcctcttggtgtcaaagagcccatgccaaacgaacggattctccacaaataccgaacccttgctggtagcgtgacggacgaatcccgggtgaaagagattgaggatcttgtcctcggcctggacaggctcaccgacattagcccattgctggagctgctgaattgccccgtgaaatcgccactggtataa
(a) sequence signature:
● length: 1473bp
● type: base sequence
● chain: two strands
● topological framework: linearity
(b) molecule type: DNA
(c) suppose: no
(d) antisense: no
(e) originate at first: terreus (Aspergillus terreus)
(f) specificity title: cis-aconitic acid decarboxylase gene (cis-aconitic acid decarboxylasegene, cad)
SEQ?ID?NO.2:
MTKQSADSNAKSGVTSEICHWASNLATDDIPSDVLERAKYLILDGIACAWVGARVPWSEKYVQATMSFEPPGACRVIGYGQKLGPVAAAMTNSAFIQATELDDYHSEAPLHSASIVLPAVFAASEVLAEQGKTISGIDVILAAIVGFESGPRIGKAIYGSDLLNNGWHCGAVYGAPAGALATGKLLGLTPDSMEDALGIACTQACGLMSAQYGGMVKRVQHGFAARNGLLGGLLAHGGYEAMKGVLERSYGGFLKMFTKGNGREPPYKEEEVVAGLGSFWHTFTIRIKLYACCGLVHGPVEAIENLQGRYPELLNRANLSNIRHVHVQLSTASNSHCGWIPEERPISSIAGQMSVAYILAVQLVDQQCLLSQFSEFDDNLERPEVWDLARKVTSSQSEEFDQDGNCLSAGRVRIEFNDGSSITESVEKPLGVKEPMPNERILHKYRTLAGSVTDESRVKEIEDLVLGLDRLTDISPLLELLNCPVKSPLV
(a) sequence signature:
● length: 490aa
● type: aminoacid sequence
(b) molecule type: protein
(c) suppose: no
(d) antisense: no
(e) originate at first: terreus (Aspergillus terreus)
(f) specificity title: cis-aconitic acid decarboxylase (cis-aconitic acid decarboxylase, CAD)
The structure of 1.3 goal gene cad expression vectors and selection markers hph expression vector
Extract respectively plasmid pXH-2 and plasmid pXH-1, restriction enzyme BspH I(Fermentas for pXH-2 plasmid, Catalog No.:#FD1284) and BamH I(Fermentas, CatalogNo.:#FD0054) carrying out enzyme cuts, restriction enzyme Pci I(Fermentas for plasmid pXH-1, Catalog No.:#ER1871) and Bgl II(Fermentas, Catalog No.:#ER0081) carry out double digestion, the recovery of tapping rubber respectively, wherein the enzyme of pXH-2 is cut product and is reclaimed the cad gene band that size is about 1.5kb, the enzyme of pXH-1 is cut product and is reclaimed the band that size is about 6.5kb.By T4 ligase enzyme (Fermentas for the fragment reclaiming, Catalog No.:#EL0011) connect, after transforming, picking positive colony is verified, the plasmid pXH-3(that obtains containing a PgpdAt1-cad-TtrpC expression cassette after order-checking is correct is referring to Fig. 5).
Take primer hph-F (5 '-cattcatgactgaactcaccgcgacgtc-3 ') and hph-R(5 '-gacggatcctattcctttgccctcggacgag-3 ') as primer pair, take plasmid pSGF957 as template, pcr amplification size is about hygromycin phosphotransferase gene (the Hygromycin Bphosphotransferase gene of 1019bp, hph), PCR fragment after purifying is carried out double digestion with BspH I and BamH I, hph gene band is reclaimed in rubber tapping, the hph gene of recovery is connected with the pXH-2 T4 ligase enzyme reclaiming after Pci I and Bgl II enzyme are cut above, after transforming, picking positive colony is verified, after order-checking is correct, obtain plasmid pXH-4(referring to Fig. 6).PXH-4 is the carrier that an energy is expressed hph gene in filamentous fungus, can be filamentous fungus cotransformation hygromycin resistance selection markers is provided.
Embodiment 2 prepares the restructuring terreus that contains PgpdAt1-cad-TtrpC expression cassette
The preparation of 2.1 terreus CICC40205 protoplastiss
1) spore suspension of terreus CICC40205 is seeded to in 50mL liquid nutrient medium ME, (substratum ME is 20g L in every premium on currency
-1glucose, 2g L
-1nH
4nO
3, 20mg L
-1(NH
4)
2hPO
4, 20mg L
-1feSO
4, 0.4g L
-1mgSO
4, 4.4mg L
-1znSO
4), the vitriol oil regulates pH to 3.5, makes spore concentration be about 10
7individual/mL, cultivates 12-18h at 200rmp, 32 ° of C.
2) filter and collect the mycelia growing with aseptic individual layer 200 order nylon cloths, and with the 0.6MMgSO of sterilizing
4solution rinses three times, press dry and is placed in aseptic 50ml triangular flask; By taking 1g mycelia, add 10ml enzymolysis solution, process 1-3h at 30 ° of C, 60rpm.Enzymolysis solution composition is: 0.8% cellulase (Sigma, Catalog No.:C1184), 0.8% lyase (Sigma, Catalog NO.:L1412), 0.4% helicase (the raw work in Shanghai, Catalog No.:SB0870), 0.6M MgSO
4, via the sterilizing filter filtration sterilization of 0.22 μ m.
3) mixed solution after above-mentioned enzymolysis is first filtered with 2 layers of aseptic lens wiping paper, then with 5 layers of lens wiping papers filtration, collect filtrate.4 ° of centrifugal collection protoplastiss of C, wash once with precooling 1.0M Sorbitol Solution USP, then (STC is 1.0M sorbyl alcohol, 50mM TrisHCl-pH 8.0,50mM CaCl to use the STC of precooling
2) washing once, finally protoplastis is resuspended in to the STC of 150 μ l precoolings, and protoplastis concentration is adjusted into 5 × 10 with STC
7individual/mL, obtains protoplastis suspension.
2.2 pXH-3 and pXH-4 cotransformation terreus
1) in above-mentioned protoplastis suspension, add approximately 5 μ g(volumes to be no more than l) linearizing pXH-3 plasmid and the linearizing pXH-4 plasmid of 1 μ g of 10 μ, (PTC is 40%PEG4000,50mM Tris-HCl pH8.0,50mM CaCl to reenter 50 μ l PTC
2), mix gently ice bath 30min.Add 1mL PTC, mix rear room temperature and place 20min; Then after mixing with top-layer agar, be poured into upper (3.9g potato dextrose agar substratum (DifcoTMPotato Dextrose the Agar) (BD of the dull and stereotyped PDA-SH of regeneration screening culture medium, and 22g sorbyl alcohol (Sigma LOT:1165825), LOT:071M00271V) be dissolved in 100ml distilled water, sterilizing, while being cooled to approximately 55 ° of C, add Totomycin (Solarbio, Catalog No.:M419099) to final concentration be 100 μ g/mL, preparation is dull and stereotyped), under 30 ° of C, dark condition, cultivate 3-4 days.
2) above (taking 4g potato dextrose agar substratum is dissolved in 100ml distilled water transformant to be forwarded to the dull and stereotyped PDA-H of screening from flat board, sterilizing, while being cooled to approximately 55 ° of C, adding Totomycin to final concentration is 100 μ g/mL, preparation is dull and stereotyped), cultivate 3-5 days, i.e. recombinant bacterial strain at 30 ° of C.
3) gained recombinant bacterial strain is transferred to the cultivation of going down to posterity on PDA-H flat board, goes down to posterity 3 times.And then collect respectively spore and use also physiological saline to carry out suitable gradient dilution, get 100 μ L and coat on PDA-H flat board, make it grow independently single bacterium colony, be monospore and separate.Get spore from single bacterium colony again and again carry out monospore separation, carry out altogether 4 monospores and separate the cultivation of going down to posterity.
Methylene-succinic acid is produced in recombinate terreus fermentation of embodiment 3
3.1 recombinant bacterial strains produce the shaking flask screening of methylene-succinic acid
1) preparation itaconic acid fermentation substratum IPM:140g L
-1glucose, 2g L
-1nH
4nO
3, 0.2gL
-1(NH
4)
2hPO
4, 20mg L
-1feSO
4, 0.4g L
-1mgSO
4, 40mg L
-1znSO
4, 40mgL
-1cuSO
4, with sulfuric acid adjustment pH to 3.5,115 ℃ of sterilizing 10min.
2) by above-mentioned gained recombinant bacterial strain, and recombinant bacterial strain go down to posterity after stable restructuring terreus bacterial strain be seeded to respectively terreus and produce spore slant medium (10g L
-1glucose, 2gL
-1naNO
3, 0.2gL
-1, KH
2pO
4, 20mg L
-1feSO
4, 5g L
-1mgSO
4, 0.5g L
-1naCl, 40mg L
-1znSO
4, 40mgL
-1cuSO
4, 0.5% wheat bran, 1.5% agarose, 115 ℃ of sterilizing 15min, then divide and are filled to test tube, then 115 ℃ of sterilizing 25min, prepare inclined-plane), cultivate for 32 ℃ and within 6 days, obtain ripe spore.Respectively each is cultured to again to ripe spore inoculating and (55ml itaconic acid fermentation substratum is housed) in 500ml triangular flask to itaconic acid fermentation substratum, every strain bacterium do two bottles parallel, 37 ℃, the 220rpm 72h that ferments.Remove by filter the mycelia in fermented liquid, fermented supernatant fluid carries out acid base titration, measures the total acid in fermented liquid.Because the main organic acid in fermented liquid is methylene-succinic acid, therefore conventionally the total acid recording is thought to the amount of methylene-succinic acid, and calculated the content (Liu Jianjun, the research of itaconic acid fermentation, University Of Science and Technology Of Tianjin's doctorate paper, 2003) of methylene-succinic acid with this.Except several strain bacterial strains produce the obvious decline of acid, all the other most bacterial strains produce acid and are all better than starting strain (referring to Fig. 6).
3) according to producing sour result, choose 22 strains produce acid preferably bacterial strain carry out again multiple sieve, every strain bacterium do three bottles parallel.Measure total acid, as shown in Figure 7, the product acid of 22 strain recombinant bacterial strains is generally higher than starting strain CICC40205 (WT) for result, and wherein the highest bacterial strain C27 has improved 7g/L(9.5% than starting strain).
The purity check of methylene-succinic acid in 3.2 fermented liquids
The fermented supernatant fluid of choosing recombinant bacterial strain C5, C27 and starting strain CICC40205 carries out efficient liquid phase chromatographic analysis (High Performance Liquid Chromatography, HPLC), to analyze the purity of methylene-succinic acid in comparison fermented liquid.Chromatographic column: Bio-rad Aminex HPX-87-H, 300mmx7.8mm; Moving phase: 4mmol/L sulfuric acid; Flow velocity: 0.8ml/min; Temperature: 30 ℃; Check temperature: 30 ℃; UV-detector (210nm).As shown in Figure 8, retention time is methylene-succinic acid at the peak of 13.317min to result, and analytical results shows, recombinant bacterial strain C5 does not have noticeable change with the methylene-succinic acid purity in C27 fermented liquid compared with starting strain CICC40205, all more than 99%.
Embodiment 4 high-yield itaconic acid restructuring aspergillus terreus pnca gene type checkings
The higher restructuring terreus bacterial strain of picking product acid is inoculated on PDA-H flat board cultivates spore, then respectively spore inoculating is cultivated in ME liquid nutrient medium, collect mycelia and extract genome, take PgpdAt-seqF(5 '-gctctgtagcttttgccccgtc-3 ') and TtrpC-seqR(5 '-cgagatcctgaacaccatttgtctc-3 ') carry out PCR as primer pair, PgpdAt1-cad-TtrpC element in amplification conversion carrier, agarose gel electrophoresis with 1% is analyzed PCR product, the integration of PgpdAt1-cad-TtrpC element in checking transformant.PgpdAt-seqF primer is positioned in PgpdAt1 promotor, about 260bp place, cad gene start codon upstream, TtrpC-seqR primer is positioned on TtrpC terminator, about 120bp place, cad gene terminator codon downstream, therefore pcr amplification product is than the approximately large 380bp of cad gene, and about 1850bp(is referring to Fig. 9).Electrophoresis result shows the band of the 1850kb that can increase in the transformant of selecting, and using wild-type terreus CICC40205 strain gene group DNA template as negative control, amplification is not to DNA fragmentation.Therefore, prove all successfully to have integrated in these transformants Pg
pdAt1-cad-Ttr
pc expression cassette.