8000 MAINT Update `hdbscan` branch w/ `main` by Micky774 · Pull Request #26384 · scikit-learn/scikit-learn · GitHub
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MAINT Update hdbscan branch w/ main #26384

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Reference Issues/PRs

Addresses #24686

What does this implement/fix? Explain your changes.

Updates w/ main

Any other comments?

glemaitre and others added 30 commits March 16, 2023 15:20
@glemaitre
DOC fix docstring dtype parameter in OrdinalEncoder (scikit-learn#25877)
ab3c060
@jeremiedbb
MAINT Clean up depreacted "log" loss of SGDClassifier for 1.3 (scikit…
d7f62b0 
…-learn#25865)
@thomasjpfan @amueller
@ogrisel @jovan-stojanovic @glemaitre
ENH Adds TargetEncoder (scikit-learn#25334)
392fdee 
Co-authored-by: Andreas Mueller <t3kcit@gmail.com>
Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
Co-authored-by: Jovan Stojanovic <62058944+jovan-stojanovic@users.noreply.github.com>
Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
@ogrisel
CI make it possible to cancel running Azure jobs (scikit-learn#25876)
1a9257c
@jeremiedbb
MAINT Clean-up deprecated if_delegate_has_method for 1.3 (scikit-lear…
9260f51 
…n#25879)
@choudharynishu
MAINT Parameter validation for tree.export_text (scikit-learn#25867)
54108d9
@rprkh
DOC impact of tol for solvers in RidgeClassifier (scikit-learn#25530)
b85bf9c
@bharatr21 @jeremiedbb
MAINT Parameters validation for metrics.hinge_loss (scikit-learn#25880)
f151833 
Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com>
@sortofamudkip
MAINT Parameters validation for metrics.ndcg_score (scikit-learn#25885)
5a17650
@glevv @jeremiedbb @glemaitre
ENH KMeans initialization account for sample weights (scikit-learn#25752
69c8489 
)

Co-authored-by: jeremiedbb <jeremiedbb@yahoo.fr>
Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com>
@sortofamudkip
TST use global_random_seed in sklearn/tests/test_dummy.py (scikit-lea…
1ae26d7 
…rn#25884)
@lorentzenchr
DOC improve calibration user guide (scikit-learn#25687)
e3e880f
@awinml @thomasjpfan @glemaitre
ENH Support for sparse matrices added to `sklearn.metrics.silhouette_…
4df0aac 
…samples` (scikit-learn#24677)

Co-authored-by: Sahil Gupta <sahil@Sahils-MBP.lan>
Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
@Veghit
MAINT validate_params for plot_tree (scikit-learn#25882)
f3c6fd6 
Co-authored-by: Itay <itayvegh@gmail.com>
@precondition
MAINT add missing space in error message in SVM (scikit-learn#25913)
791e594
@thomasjpfan
FIX Adds requires_y tag to TargetEncoder (scikit-learn#25917)
1f373fe
@jeremiedbb
MAINT Consistent cython types continued (scikit-learn#25810)
5d213c6
@jeremiedbb
TST Speed-up common tests of DictionaryLearning (scikit-learn#25892)
a85b14d
@jeremiedbb
TST Speed-up test_dbscan_optics_parity (scikit-learn#25893)
3043ea6
@marctorsoc @glemaitre
ENH add np.nan option for zero_division in precision/recall/f-score (s…
dedc587 
…cikit-learn#25531)

Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
MAINT Parameters validation for datasets.make_low_rank_matrix (scikit…
940303c 
…-learn#25901)
@ZeeshanLone @jeremiedbb
MAINT Parameter validation for metrics.cluster.adjusted_mutual_info_s…
e5dac1d 
…core (scikit-learn#25898)

Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com>
@jeremiedbb @thomasjpfan
TST Speed-up test_partial_dependence.test_output_shape (scikit-learn#…
72b040a 
…25895)

Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
@jeremiedbb
MAINT Parameters validation for datasets.make_regression (scikit-lear…
55cb632 
…n#25899)

Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com>
@DominicFox
MAINT Parameters validation for metrics.mean_squared_log_error (sciki…
73371a6 
…t-learn#25924)
@Veghit
TST Use global_random_seed in tests/test_naive_bayes.py (scikit-learn…
837236a 
…#25890)
@marenwestermann @jeremiedbb
TST add global_random_seed fixture to sklearn/datasets/tests/test_cov…
01f8d34 
…type.py (scikit-learn#25904)

Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com>
Co-authored-by: jeremiedbb <jeremiedbb@yahoo.fr>
MAINT Parameters validation for datasets.make_multilabel_classificati…
e3d1f9a 
…on (scikit-learn#25920)
@futurewarning
Fixed feature mapping typo (scikit-learn#25934)
7e809db
@glemaitre @lesteve
MAINT switch to newer codecov uploader (scikit-learn#25919)
6b258d3 
Co-authored-by: Loïc Estève <loic.esteve@ymail.com>
awinml and others added 27 commits May 6, 2023 06:43
@awinml @gbolmier
@glemaitre @thomasjpfan
FEA Add multiclass support to average_precision_score (scikit-learn…
cb14693 
…#24769)

Co-authored-by: Geoffrey <geoffrey.bolmier@gmail.com>
Co-authored-by: gbolmier <geoffrey.bolmier@volvocars.com>
Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
DOC Fix minor typo - "there" to "their" (scikit-learn#26346)
b747bac
@adam2392
MAINT Fix usage of property in Cython extension classes (scikit-lea…
58f0f1d 
…rn#26297)
@amay1212 @ArturoAmorQ
DOC Add HGBDT to "user_guide" reference in RF (scikit-learn#26322)
b013c6b 
Co-authored-by: Arturo Amor <86408019+ArturoAmorQ@users.noreply.github.com>
@ArturoAmorQ
DOC Fix wrong ref in RandomForestClassifier docstring (scikit-learn#2…
2e15167 
…6349)

Co-authored-by: ArturoAmorQ <arturo.amor-quiroz@polytechnique.edu>
@thomasjpfan
MNT Always reset sckit-learn global config in examples (scikit-learn#…
fe52f14 
…26340)
@marenwestermann
DOC update documentation on re-building Cython extensions (scikit-lea…
b87a33f 
…rn#26334)
@lesteve
EXA Tweak plot_set_output comment (scikit-learn#26350)
28d65c5
@markotoplak
AdaBoost: allow base_estimator=None (scikit-learn#26242)
72a6049
@searchforpassion
DOC update list numbers in contributing doc (scikit-learn#26360)
d0b383e
@glemaitre
MAINT bump minimum pytest to 7.1.2 (scikit-learn#26373)
5782cd7
@Charlie-XIAO
FIX tree.export_text and tree.export_graphviz accepts feature and…
6be774b 
… class names as array-like (scikit-learn#26289)
@thomasjpfan
CI Do not upload to codecov on forks (scikit-learn#26375)
4d07c80
@hmaarrfk
MAINT Update _kmeans.py warning message (scikit-learn#26362)
a2b8571
@Charlie-XIAO @glemaitre
MAINT Parameters validation for sklearn.tree.export_graphviz (scikit-…
be892f5 
…learn#26034)

Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
@lorentzenchr @thomasjpfan @Micky774
TST add test_binomial_vs_alternative_formulation (scikit-learn#26298)
4a5f954 
Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
Co-authored-by: Meekail Zain <zainmeekail@gmail.com>
@Micky774 @thomasjpfan
@jjerphan @glemaitre
Include HDBSCAN as a sub-module for sklearn.cluster (scikit-learn…
bd04bda 
…#22616)

Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
Co-authored-by: Julien Jerphanion <git@jjerphan.xyz>
Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
@Micky774 @thomasjpfan @jjerphan
CLN Cleaned cluster/_hdbscan/_linkage.pyx (scikit-learn#24857)
488fb1f 
Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
Co-authored-by: Julien Jerphanion <git@jjerphan.xyz>
@Micky774 @jjerphan
DOC Adds HDBSCAN.dbscan_clustering section to plot_hdbscan.py (sc…
df7cf3a 
…ikit-learn#25538)

Co-authored-by: Julien Jerphanion <git@jjerphan.xyz>
@Micky774 @thomasjpfan @jjerphan
ENH Extends outlier encoding scheme to HDBSCAN.dbscan_clustering (s…
800c2a6 
…cikit-learn#24698)

Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
Co-authored-by: Julien Jerphanion <git@jjerphan.xyz>
@Micky774 @jjerphan
@thomasjpfan @glemaitre
CLN Cleaned cluster/_hdbscan/_reachability.pyx (scikit-learn#24701)
29c53b7 
Co-authored-by: Julien Jerphanion <git@jjerphan.xyz>
Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
@Micky774
CLN Update cluster/_hdbscan/_tree.pyx style and syntax (scikit-lear…
70ae320 
…n#25768)
@Micky774 @jjerphan
CLN Cleaned TreeUnionFind in _hdbscan/_tree.pyx (scikit-learn#25827)
a6e061e 
Co-authored-by: Julien Jerphanion <git@jjerphan.xyz>
@Micky774 @jjerphan
ENH _hdbscan HIERARCHY data type introduction (scikit-learn#25826)
d013d38 
Co-authored-by: Julien Jerphanion <git@jjerphan.xyz>
@Micky774 @thomasjpfan
CLN BFS Style Improvement (scikit-learn#26096)
792833a 
Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
@Micky774
CLN _hdbscan/_tree.pyx algorithms refactor (scikit-learn#26011)
c02c455
@Micky774
CLN HDBSCAN _tree.pyx::do_labelling refactor (scikit-learn#26101)
607dea8
@Micky774 Micky774 changed the base branch from main to hdbscan May 16, 2023 16:41
@Micky774 Micky774 closed this May 16, 2023
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