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The recent developments of phase-contrast synchrotron imaging techniques have been of great interest for paleontologists, providing three-dimensional (3D) tomographic images of anatomical structures, thereby leading to new... more
The recent developments of phase-contrast synchrotron imaging techniques have been of great interest for paleontologists, providing three-dimensional (3D) tomographic images of anatomical structures, thereby leading to new paleobiological insights and the discovery of new species. However, until now, it has not been used on features smaller than 5–7 μm voxel size in fossil bones. Because much information is contained within the 3D histological architecture of bone, including an ontogenetic record, crucial for understanding the paleobiology of fossil species, the application of phase-contrast synchrotron tomography to bone at higher resolutions is potentially of great interest. Here we use this technique to provide new 3D insights into the submicron-scale histology of fossil and recent bones, based on the development of new pink-beam configurations, data acquisition strategies, and improved processing tools. Not only do the scans reveal by nondestructive means all of the major features of the histology at a resolution comparable to that of optical microscopy, they provide 3D information that cannot be obtained by any other method.
The fossil record is biased towards biomineralised elements (for example bones, shells and teeth) that usually retain their original three-dimensional shape. Non-biomineralised arthropods, often comprising only exoskeletal tissues such as... more
The fossil record is biased towards biomineralised elements (for example bones, shells and teeth) that usually retain their original three-dimensional shape. Non-biomineralised arthropods, often comprising only exoskeletal tissues such as cuticle, are comparatively rare and are usually preserved in two-dimensions (including examples inside early diagenetic concretions). Rarer still are exceptionally preserved fossils that contain replicated soft tissues; although tissues that
Dupret, V., S. Sanchez, D. Goujet, P. Tafforeau, and P. Ahlberg. 2011: Structures crâniennes du plus ancien vertébré à mâchoires (-410 millions d’années) révélé par tomographie synchrotron. 15ème Réunion des Chercheurs Francais en Suède,... more
Dupret, V., S. Sanchez, D. Goujet, P. Tafforeau, and P. Ahlberg. 2011: Structures crâniennes du plus ancien vertébré à mâchoires (-410 millions d’années) révélé par tomographie synchrotron. 15ème Réunion des Chercheurs Francais en Suède, Tekniska Museet, Stockholm, 2011.
ABSTRACT 3D visualization of forming organs and tissues in early embryos helps understanding their developmental dynamics. 3D reconstruction of an organ from an image stack requires: (1) a sufficient number of slices in order to obtain... more
ABSTRACT 3D visualization of forming organs and tissues in early embryos helps understanding their developmental dynamics. 3D reconstruction of an organ from an image stack requires: (1) a sufficient number of slices in order to obtain smooth contours, and (2) a satisfactory contrast that allows differentiating between tissue layers during segmentation. Based on these principles, satisfactory but very time-consuming techniques are available for manual segmentation and step-by-step 3D reconstructions of small embryonic structures using histology (Viriot et al., 1997, 2000). Usual micro-CT devices available in developmental biology units do not provide the sufficient resolution required to visualize the smaller developing structures at early embryonic stages, such as tooth germs at E11.5. Furthermore, the contrast obtained from soft-tissues is low if high doses of radiation—not supported by small samples—are not used. A recent study (Raj et al., 2014) has shown that synchrotron imaging with a sliver-based contrast agent provides images of embryonic soft-tissues with a resolution of 4–10 micrometers. Here we show that the combination of propagation phase contrast, rapid imaging, phase retrieval and iodine contrast agent allows soft-tissue imaging with a voxel size of 0.695 micrometers and a relatively low radiation dose. This method provides submicronic images where single cells can be individualized.
Research Interests:
Research Interests:
ABSTRACT The ESRF synchrotron beamline ID19, dedicated to full-field parallel-beam imaging techniques such as phase-contrast and absorption microtomography and X-ray topography, is one of the most versatile instruments of its kind. This... more
ABSTRACT The ESRF synchrotron beamline ID19, dedicated to full-field parallel-beam imaging techniques such as phase-contrast and absorption microtomography and X-ray topography, is one of the most versatile instruments of its kind. This paper presents key characteristics of ID19 in its present form, names examples for research and development performed on the beamline, and outlines the plans for an upgrade on the beamline in coming years, to adapt to the growing needs of the user community. The technical goals envisioned include an increase in available beam size and maximum photon energy, and a substantial increase in flux density for applications using beams of small and intermediate size.
ABSTRACT This paper deals with the description of Cretonodes antounazari gen. et sp.nov. Cretonodini trib.nov., oldest representative of the subfamily Trinodinae; Dermestidae), Rhizophtoma elateroides gen. et sp.nov. (first member of... more
ABSTRACT This paper deals with the description of Cretonodes antounazari gen. et sp.nov. Cretonodini trib.nov., oldest representative of the subfamily Trinodinae; Dermestidae), Rhizophtoma elateroides gen. et sp.nov. (first member of Rhizophtominae subfam. nov. and oldest representative of Monotomidae), and Archelatrius marinae gen. et sp.nov. (oldest representative of the Latridiinae; Latridiidae). Short reviews of known fossil records of the mentioned families are given.
Research Interests:
ABSTRACT This article describes the current capabilities of the European Synchrotron radiation Facility (ESRF), and more particularly those of the ID19 beamline, devoted to imaging, for microtomography. Phase contrast, in situ and fast... more
ABSTRACT This article describes the current capabilities of the European Synchrotron radiation Facility (ESRF), and more particularly those of the ID19 beamline, devoted to imaging, for microtomography. Phase contrast, in situ and fast acquisitions, are emphasized, and examples illustrate the possibilities offered by the use of modern SR sources. RÉSUMÉ: Cet article expose les possibilités actuelles de l'Installation Européenne de Rayonnement Synchrotron (ESRF), et plus en particulier celles de la ligne ID19 dédiée à l' 'imagerie, en ce qui concerne la microtomographie. Les aspects contraste de phase, in situ et acquisition rapide sont soulignés. Des exemples illustrent les possibilités nouvelles.
The Eda-A1-Edar signaling pathway is involved in the development of organs with an ectodermal origin, including teeth. In mouse, mutants are known for both the ligand, Eda-A1 (Tabby), and the receptor, Edar (Downless). The adult... more
The Eda-A1-Edar signaling pathway is involved in the development of organs with an ectodermal origin, including teeth. In mouse, mutants are known for both the ligand, Eda-A1 (Tabby), and the receptor, Edar (Downless). The adult dentitions of these two mutants have classically been considered to be similar. However, previous studies mentioned differences in embryonic dental development between Eda(Ta) and Edar(dl-J) mutants. A detailed study of tooth morphology in mutants bearing losses of functions of these two genes thus appears necessary to test the pattern variability induced by the developmental modifications. 3D-reconstructions of the cheek teeth have been performed at the ESRF (Grenoble, France) by X-ray synchrotron microtomography to assess dental morphology. The morphological variability observed in Eda(Ta) and Edar(dl-J) mutants have then been compared in detail. Despite patchy similarities, our detailed work on cheek teeth in Eda(Ta) and Edar(dl-J) mice show that all dental morphotypes defined in Edar(dl-J) mice resolutely differ from those of Eda(Ta) mice. This study reveals that losses of function of Eda and Edar have distinct impacts on the tooth size and morphology, contrary to what has previously been thought. CONCLUSION/SIGNIFIANCE: The results indicate that unknown mechanisms of the Eda pathway are implicated in tooth morphogenesis. Three hypotheses could explain our results; an unexpected role of the Xedar pathway (which is influenced by the Eda gene product but not that of Edar), a more complex connection than has been appreciated between Edar and another protein, or a ligand-independent activity for Edar. Further work is necessary to test these hypotheses and improve our understanding of the mechanisms of development.

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