Hadar Ben-Yoav
Ben Gurion University of the Negev, Biomedical Engineering, Faculty Member
- Biomedical Engineering, BioMEMS, Electrochemistry, Biosensors, Nanotechnology, Bioelectronics, and 36 moreLab On A Chip, MEMS sensor, BioMedical Devices, Bioelectrochemistry, Nanofabrication, Microfabrication, Biomaterials, Chitosan, Electrochemical Sensors, Pattern Recognition, Biocomposites, Materials Science & Engineering, Biochip, Microfluidics, Electrochemical Biosensors, Whole Cell Bacterial Biosensor, Electrochemical Impedance Spectroscopy, Conducting Polymers, Diffusion, MEMS design: Sensors and Actuators, Carbon Nanotubes, Point-of-care diagnostics, Electrochemical DNA Biosensor, Electric Fields, Signal Processing, Cyclic Voltammetry, Hydrogels, Thin Films by Electrochemical Deposition and NanoTechnology, Biopolymers, Biosensor, Element redox cycling, Nano Fabrication, Microelectronics, Sensors, Semiconductors, and Nanodevicesedit
Page 154. 4 Biomedical Implications of the Porosity of Microbial Biofilms H. Ben-Yoav Department of Physical Electronics, School of Electrical Engineering, Faculty of Engineering, Tel Aviv University, Tel Aviv, Israel N. Cohen ...
Research Interests:
Research Interests:
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A lab-on-chip consisting of a unique integration of whole-cell sensors, a MOEMS (Micro-Opto-Electro-Mechanical-System) modulator, and solid-state photo-detectors was implemented for the first time. Whole-cell sensors were genetically... more
A lab-on-chip consisting of a unique integration of whole-cell sensors, a MOEMS (Micro-Opto-Electro-Mechanical-System) modulator, and solid-state photo-detectors was implemented for the first time. Whole-cell sensors were genetically engineered to express a bioluminescent reporter (lux) as a function of the lac promoter. The MOEMS modulator was designed to overcome the inherent low frequency noise of solid-state photo- detectors by means of a previously reported modulation technique, named IHOS (Integrated Heterodyne Optical System). The bio-reporter signals were modulated prior to photo-detection, increasing the SNR of solid-state photo-detectors at least by three orders of magnitude. Experiments were performed using isopropyl-beta-d-thiogalactopyranoside (IPTG) as a preliminary step towards testing environmental toxicity. The inducer was used to trigger the expression response of the whole-cell sensors testing the sensitivity of the lab-on-chip. Low intensity bio-reporter optical signals were measured after the whole-cell sensors were exposed to IPTG concentrations of 0.1, 0.05, and 0.02 mM. The experimental results reveal the potential of this technology for future implementation as an inexpensive massive method for rapid environmental toxicity detection.
Research Interests:
A new soluble and enzymatically active hybrid of silver and the enzyme glucose oxidase was recently developed in our lab. We hypothesized that this hybrid carries potential as new antibacterial agent to combat bio lms: by hybrid... more
A new soluble and enzymatically active hybrid of silver and the enzyme glucose oxidase was recently developed in our lab. We hypothesized that this hybrid carries potential as new antibacterial agent to combat bio lms: by hybrid penetration into the bio lm and scavenging of glucose traces, hydrogen peroxide will be formed by the enzyme, subsequently releasing silver ions from the hybrid’s silver “shell” by local chemical oxidation. These in situ released silver ions are expected effectively to kill bacterial cells located within their immediate vicinity. We designed and established a working ow system for in vitro bio lm growth and comparison of the ef cacy of the antibacterial activity of several forms of silver and the hybrid on E. coli bio lms. Results obtained demonstrated the feasibility of the working hypothesis, thus paving the way for subsequent in vivo studies.
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The use of on-chip cellular activity monitoring for biological/chemical sensing is promising for environmental, medical and pharmaceutical applications. The miniaturization revolution in microelectronics is harnessed to provide on-chip... more
The use of on-chip cellular activity monitoring for biological/chemical sensing is promising for environmental, medical and pharmaceutical applications. The miniaturization revolution in microelectronics is harnessed to provide on-chip detection of cellular activity, opening new horizons for miniature, fast, low cost and portable screening and monitoring devices. In this chapter we survey different on-chip cellular activity detection technologies based on electrochemical, bio-impedance and optical detection. Both prokaryotic and eukaryotic cell-on-chip technologies are mentioned and reviewed.
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Bacterial cells attachment onto solid surfaces and the following growth into mature microbial biofilms may result in highly antibiotic resistant biofilms. Such biofilms may be incidentally formed on tissues or implanted devices, or... more
Bacterial cells attachment onto solid surfaces and the following growth into mature microbial biofilms may result in highly antibiotic resistant biofilms. Such biofilms may be incidentally formed on tissues or implanted devices, or intentionally formed by directed deposition of microbial sensors on whole- cell bio-chip surface. A new method for electrical characterization of the later on-chip microbial biofilm buildup is presented in this paper. Measurement of impedance vs. frequency in the range of 100 mHz to 400 kHz of Escherichia coli cells attachment to indium-tin-oxide-coated electrodes was carried out while using optical microscopy estimating the electrode area coverage. We show that impedance spectroscopy measurements can be interpreted by a simple electrical equivalent model characterizing both attachment and growth of the biofilm. The correlation of extracted equivalent electrical lumped components with the visual biofilm parameters and their dependence on the attachment and growth phases is confirmed.
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DNA hybridization detection in microfluidic devices can reduce sample volumes, processing times, and can be integrated with other measurements. However, as device footprints decrease and their complexity increase, the signal-to-noise... more
DNA hybridization detection in microfluidic devices can reduce sample volumes, processing times, and can be integrated with other measurements. However, as device footprints decrease and their complexity increase, the signal-to-noise ratio in these systems also decreases and the sensitivity is thereby compromised. Device miniaturization produces distinct properties and phenomena with greater influence at the micro-scale than at the macro-scale. Here, a diffusion-restriction model was applied to a miniaturized biochip nanovolume reactor to accurately characterize DNA hybridization events that contribute to shifts in both charge transfer resistance and diffusional resistance. These effects are shown to play a significant role in electrochemical impedance spectroscopy (EIS) analyses at these length scales. Our highly functional microfluidic biosensor enables the detection of ssDNA targets selectively, with a calculated detection limit of 3.8 nM, and cross-reactivity of 13% following 20 min incubation with the target. This new biosensing approach can be further modeled and tested elucidating diffusion behavior in miniaturized devices and improving the performance of biosensors.
Research Interests:
Miniaturization of analytical benchtop procedures into the micro-scale provides significant advantages in regards to reaction time, cost, and integration of pre-processing steps. Utilizing these devices towards the analysis of DNA... more
Miniaturization of analytical benchtop procedures into the micro-scale provides significant advantages in regards to reaction time, cost, and integration of pre-processing steps. Utilizing these devices towards the analysis of DNA hybridization events is important because it offers a technology for real time assessment of biomarkers at the point-of-care for various diseases. However, when the device footprint decreases
the dominance of various physical phenomena increases. These phenomena influence the fabrication precision and operation reliability of
the device. Therefore, there is a great need to accurately fabricate and operate these devices in a reproducible manner in order to improve
the overall performance. Here, we describe the protocols and the methods used for the fabrication and the operation of a microfluidic-based electrochemical biochip for accurate analysis of DNA hybridization events. The biochip is composed of two parts: a microfluidic chip with three parallel micro-channels made of polydimethylsiloxane (PDMS), and a 3 x 3 arrayed electrochemical micro-chip. The DNA hybridization events are detected using electrochemical impedance spectroscopy (EIS) analysis. The EIS analysis enables monitoring variations of the properties of the electrochemical system that are dominant at these length scales. With the ability to monitor changes of both charge transfer and diffusional resistance with the biosensor, we demonstrate the selectivity to complementary ssDNA targets, a calculated detection limit of 3.8 nM, and a 13% cross-reactivity with other non-complementary ssDNA following 20 min of incubation. This methodology can improve the performance of miniaturized devices by elucidating on the behavior of diffusion at the micro-scale regime and by enabling the study of DNA hybridization events.
the dominance of various physical phenomena increases. These phenomena influence the fabrication precision and operation reliability of
the device. Therefore, there is a great need to accurately fabricate and operate these devices in a reproducible manner in order to improve
the overall performance. Here, we describe the protocols and the methods used for the fabrication and the operation of a microfluidic-based electrochemical biochip for accurate analysis of DNA hybridization events. The biochip is composed of two parts: a microfluidic chip with three parallel micro-channels made of polydimethylsiloxane (PDMS), and a 3 x 3 arrayed electrochemical micro-chip. The DNA hybridization events are detected using electrochemical impedance spectroscopy (EIS) analysis. The EIS analysis enables monitoring variations of the properties of the electrochemical system that are dominant at these length scales. With the ability to monitor changes of both charge transfer and diffusional resistance with the biosensor, we demonstrate the selectivity to complementary ssDNA targets, a calculated detection limit of 3.8 nM, and a 13% cross-reactivity with other non-complementary ssDNA following 20 min of incubation. This methodology can improve the performance of miniaturized devices by elucidating on the behavior of diffusion at the micro-scale regime and by enabling the study of DNA hybridization events.
Research Interests:
Lab-on-a-chip (LOC) devices for electrochemical analysis of DNA hybridization events offer a technology for real-time and label-free assessment of biomarkers at the point-of-care. Here, we present a microfluidic LOC, with 3 3 arrayed... more
Lab-on-a-chip (LOC) devices for electrochemical analysis of DNA hybridization events offer a technology for real-time and label-free assessment of biomarkers at the point-of-care. Here, we present a microfluidic LOC, with 3 3 arrayed electrochemical sensors for the analysis of DNA hybridization events. A new dual layer microfluidic valved manipulation system is integrated providing controlled and automated capabilities for high throughput analysis. This feature improves the repeatability, accuracy, and overall sensing performance (Fig. 1). The electrochemical activity of the fabricated microfluidic device is validated and demonstrated repeatable and reversible Nernstian characteristics. System design required detailed analysis of energy storage and dissipation as our sensing modeling involves diffusion- related electrochemical impedance spectroscopy. The effect of DNA hybridization on the calculated charge transfer resistance and the diffusional resistance components is evaluated. We demonstrate a specific device with an average cross-reactivity value of 27.5%. The device yields semilogarithmic dose response and enables a theoretical detection limit of 1 nM of complementary ssDNA target. This limit is lower than our previously reported non-valved device by 74% due to on-chip valve integration providing controlled and accurate assay capabilities.
Research Interests:
Clozapine is the most effective antipsychotic medication for schizophrenia, but it is underutilized because of the inability to effectively monitor its treatment efficacy and side effects. In this work, we demonstrate the first analytical... more
Clozapine is the most effective antipsychotic medication for schizophrenia, but it is underutilized because of the inability to effectively monitor its treatment efficacy and side effects. In this work, we demonstrate the first analytical micro-system for real-time monitoring of clozapine serum levels. An electrochemical lab-on-a-chip is developed and integrated with a catechol-chitosan redox cycling system. The microfabricated device incorporates 4 electrochemical reaction chambers with the capability of analyzing microliter-volume samples. Integration of the catechol-chitosan film amplifies the clozapine oxidative signal and improves the signal-to-noise ratio, which addresses sensitivity and selectivity challenges. Optimization of the redox cycling system fabrication parameters and analysis of various electrochemical techniques and data processing approaches is implemented to maximize clozapine detection performance. The device is tested with buffer samples containing clozapine and demonstrates a sensitivity of 54 mC mL cm 2 mg 1 and a limit-of-detection of 0.8 mg mL 1, a sensing performance similar to a counterpart macro-scale benchtop system. Importantly, the feasibility to differentiate between 0.33 mg mL 1 and 3.27 mg mL 1 clozapine concentrations in human serum without any preceding dilution or filtering procedures is demonstrated, a significant step towards utilizing point- of-care testing micro-systems for schizophrenia treatment management. With these micro-systems, we envision more effective and safe treatment that will enable fewer visits to the clinicians, decrease costs and patient burden.
Research Interests:
Bacterial bio lms present a societal challenge, as they occur in the majority of infections but are highly resistant to both immune mechanisms and traditional antibiotics. In the pursuit of better understanding bio lm biology for... more
Bacterial bio lms present a societal challenge, as they occur in the majority of infections
but are highly resistant to both immune mechanisms and traditional antibiotics. In the
pursuit of better understanding bio lm biology for developing new treatments, there is a
need for streamlined, controlled platforms for bio lm growth and evaluation. We leverage advantages of micro uidics to develop a system in which bio lms are formed and sectioned, allowing parallel assays on multiple sections of one bio lm. A micro uidic testbed with multiple depth pro les was developed to accommodate bio lm growth and sectioning by hydraulically actuated valves. In realization of the platform, a novel fabrication technique
was developed for creating multi-depth micro uidic molds using sequentially patterned photoresist separated and passivated by conformal coatings using atomic layer deposition. Bio lm thickness variation within three separately tested devices was less than 13% of the average thickness in each device, while variation between devices was 23% of the average thickness. In a demonstration of parallel experiments performed on one bio lm within one device, integrated valves were used to trisect the uniform bio lms with one section maintained as a control, and two sections exposed to different concentrations of sodium dodecyl sulfate. The technology presented here for multi-depth microchannel fabrication can be used to create a host of micro uidic devices with diverse architectures. While this work focuses on one application of such a device in bio lm sectioning for parallel experimentation, the tailored architectures enabled by the fabrication technology can be used to create devices that provide new biological information.
but are highly resistant to both immune mechanisms and traditional antibiotics. In the
pursuit of better understanding bio lm biology for developing new treatments, there is a
need for streamlined, controlled platforms for bio lm growth and evaluation. We leverage advantages of micro uidics to develop a system in which bio lms are formed and sectioned, allowing parallel assays on multiple sections of one bio lm. A micro uidic testbed with multiple depth pro les was developed to accommodate bio lm growth and sectioning by hydraulically actuated valves. In realization of the platform, a novel fabrication technique
was developed for creating multi-depth micro uidic molds using sequentially patterned photoresist separated and passivated by conformal coatings using atomic layer deposition. Bio lm thickness variation within three separately tested devices was less than 13% of the average thickness in each device, while variation between devices was 23% of the average thickness. In a demonstration of parallel experiments performed on one bio lm within one device, integrated valves were used to trisect the uniform bio lms with one section maintained as a control, and two sections exposed to different concentrations of sodium dodecyl sulfate. The technology presented here for multi-depth microchannel fabrication can be used to create a host of micro uidic devices with diverse architectures. While this work focuses on one application of such a device in bio lm sectioning for parallel experimentation, the tailored architectures enabled by the fabrication technology can be used to create devices that provide new biological information.
Research Interests:
Individually, advances in microelectronics and biology transformed the way we live our lives. However, there remain few examples in which biology and electronics have been interfaced to create synergistic capabilities. We believe there... more
Individually, advances in microelectronics and biology transformed the way we live our lives. However, there remain few examples in which biology and electronics have been interfaced to create synergistic capabilities. We believe there are two major challenges to the integration of biological components into microelectronic systems: (i) assembly of the biological components at an electrode address, and (ii) communication between the assembled biological components and the underlying electrode. Chitosan possesses a unique combination of properties to meet these challenges and serve as an effective bio-device interface material. For assembly, chitosan’s pH-responsive film-forming properties allow it to “recognize” electrode-imposed signals and respond by self-assembling as a stable hydrogel film through a cathodic electrodeposition mechanism. A separate anodic electrodeposition mechanism was recently reported and this also allows chitosan hydrogel films to be assembled at an electrode address. Protein-based biofunctionality can be conferred to electrodeposited films through a variety of physical, chemical and biological methods. For communication, we are investigating redox-active catechol-modified chitosan films as an interface to bridge redox-based communication between biology and an electrode. Despite significant progress over the last decade, many questions still remain which warrants even deeper study of chitosan’s structure, properties, and functions.
Research Interests: Biomaterials and Chitosan
A three-dimensional micro-supercapacitor has been developed using a novel bottom-up assembly method combining genetically modified Tobacco mosaic virus (TMV-1Cys), photolithographically defined micropillars and selective deposition of... more
A three-dimensional micro-supercapacitor has been developed using a novel bottom-up assembly method combining genetically modified Tobacco mosaic virus (TMV-1Cys), photolithographically defined micropillars and selective deposition of ruthenium oxide on multi-metallic microelectrodes. The three- dimensional microelectrodes consist of a titanium nitride current collector with two functionalized areas: (1) gold coating on the active electrode area promotes TMV-1Cys adhesion, and (2) sacrificial nickel pads dissolve in ruthenium tetroxide plating solution to produce ruthenium oxide on all elec- trically connected areas. The microfabricated electrodes are arranged in an interdigitated pattern, and the capacitance per electrode has been measured as high as 203 mF cm 2 with solid Nafion electrolyte. The process integration of bio-templated ruthenium oxide with microfabricated electrodes and solid elec- trolyte is an important advance towards the energy storage needs of mass produced self-sufficient micro- devices.