Capture–mark–recapture

Horseshoe crabs have recently gained popularity as new exotic delicacies in Malaysia, especially in Johor. It has been reported and claimed by some fishermen that horseshoe crabs, particularly females, are being transported in bulk to Thailand. This claim has sparked interest to identify population size and study the behaviour of horseshoe crabs along the east coast of Peninsular Malaysia in an attempt to determine the effect of this demand on the existing population. A study was carried out from December 2011 to March 2012 to determine the coastal horseshoe crab Tachypleus gigas population size in Chendor and Cherating, Pahang, about 10 km apart on the east coast of Peninsular Malaysia, using a Capture-Mark-Recapture method. The sampling was carried out three times at both sites. The population size was calculated using Bailey’s Triple Catch formula with the assumption of an open population. The horseshoe crabs’ ‘traveling distance’ was also determined by attaching numbered, white button tags, each bearing the researcher’s phone number, to a total of 99 horseshoe crab individuals (61 in Chendor, 38 in Cherating). The total estimated populations were 7,140 in Chendor and 9,900 in Cherating. The two populations were found to be interchangeable as the tagged animals from Chendor were recaptured in Cherating and vice versa, thus confirming emigration and immigration. About 25 % of tagged animals were recaptured in various places (at Chendor, Cherating and also outside both locations) as reported by fishermen. Animals tagged in Cherating were caught in a few locations in Pahang, including Tanjung Lumpur which is more than 50 km to the south. Most recaptures (40 %) were from different locations remote from the site where the horseshoe crabs were tagged and released. This study is on-going and notifications are still expected regarding the future location of the tagged animals.

Capture–mark–recapture methods have been extensively used to estimate abundance, demography, and life history parameters of populations of several taxa. However, the high mobility of many species means that dedicated surveys are logistically complicated and expensive. Use of opportunistic data may be an alternative, if modeling takes into account the inevitable heterogeneity in capture probability from imperfect detection and incomplete sampling, which can produce significant bias in parameter estimates. Here, we compare covariate‐based open Jolly‐Seber models (POPAN) and multi‐state open robust design (MSORD) models to estimate demographic parameters of the sperm whale population summering in the Azores, from photo‐identification data collected opportunistically by whale‐watching operators and researchers. The structure of the MSORD also allows for extra information to be obtained, estimating temporary emigration and improving precision of estimated parameters. Estimates of survival from both POPAN and MSORD were high, constant, and very similar. The POPAN model, which partially accounted for heterogeneity in capture probabilities, estimated an unbiased super‐population of ~1470 whales, with annual abundance showing a positive trend from 351 individuals (95% CI: 234–526) in 2010 to 718 (95% CI: 477–1082) in 2015. In contrast, estimates of abundance from MSORD models that explicitly incorporated imperfect detection due to temporary emigration were less biased, more precise, and showed no trend over years, from 275 individuals (95% CI: 188–404) in 2014 to 367 (95% CI: 248–542) in 2012. The MSORD estimated short residence time and an even‐flow temporary emigration, meaning that the probability of whales emigrating from and immigrating to the area was equal. Our results illustrate how failure to account for transience and temporary emigration can lead to biased estimates and trends in abundance, compromising our ability to detect true population changes. MSORD models should improve inferences of population dynamics, especially when capture probability is low and highly variable, due to wide‐ranging behavior of individuals or to non‐standardized sampling. Therefore, these models should provide less biased estimates and more accurate assessments of uncertainty that can inform management and conservation measures.

The dwindling number of the tri-spine horseshoe crab, Tachypleus tridentatus has been reported globally and its status in Malaysia is not much known. Study on dimorphism in adult body sizes and population size estimation were conducted using capture–mark–recapture method of adult T. tridentatus in Tawau, Sabah. The estimated population sizes of T. tridentatus ranged from 182 to 1095 with 95% confident limits of 56–42,942 individuals (Schnabel formula). The multivariate discriminant Hotelling’s T2 test verifies the sexual size dimorphism among the adult T. tridentatus with 97.7% separation among sexes (Hotelling’s T2 = 778.49, F = 152.85, p < 0.001) with females being larger and heavier than the male individuals. The number estimated from the study is the first reported for T. tridentatus in Malaysia, particularly in Sabah. Even though this number may slightly overestimate the actual population size in the area owing to the low number of individuals recaptured, for now it could serve as baseline data for horseshoe crab management purpose.

The population of Sanderlings Calidris alba along the East Atlantic flyway has grown considerably during the last decades. Perhaps reflecting this augmented population size, increasing numbers of Sanderling have been reported to stage in the Wadden Sea during spring and autumn migration. Estimates of the numbers of Sanderlings in the Wadden Sea have previously been based on a limited number of counts that were not corrected for the turnover of individuals. In this study, we accounted for turnover using estimates of the probability that
individually colour-ringed Sanderlings are still present two days after a sighting. In combination with daily counts during high tide, we estimated the total number of Sanderlings that used the island Griend and surrounding mudflats, in the western Dutch Wadden Sea, during southward passage in 2013 and 2014. We also estimated minimal staging durations of Sanderlings at Griend. Non-moulting birds were significantly heavier upon capture, which suggests that they were refuelling for long non-stop migratory flights. Winter sightings confirmed that the non-moulting Sanderlings winter in sub-Saharan Africa and that the moulting Sanderlings spent the winter in Europe or northern Africa. With an average minimal stay in the western Dutch Wadden Sea of 9 days in 2013 and 12 in 2014, non-moulting Sanderlings stayed for a much shorter time
than moulting Sanderlings, which stayed for 32 days in 2013 and 36 days in 2014. Non-moulting individuals were less likely to be resighted between years. Estimates of minimal staging duration are likely underestimates of the true staging duration, and we propose that moulting Sanderlings probably complete
their wing moult in the Wadden Sea. We estimated that the total number of Sanderlings using the western Dutch Wadden Sea before migration to European or African wintering areas were 27,546 (95% CI 22,739–41,449) in 2013 and 22,574 (95% CI 16,436–46,114) in 2014. This would amount to 11–14% of a total flyway population of 200,000 individuals, representing an amazing degree of concentration for what is regarded as a rather widely and thinly spread shorebird species.

Due to their locomotion mode, bats tend to have high mobility, and the distances across which they move may vary with taxa. Although such movements are important components of the species biology, information on them is scarce. The data reported herein was obtained during samplings that aimed to survey the bat fauna in forest remnants from Santa Catarina state, southern Brazil. We obtained two records of movement: one of Artibeus lituratus (distance of 19.4 km) and another of Sturnira lilium (distance of 54.7 km), both taking place across different phytophysiognomies. Artibeus lituratus and S. lilium differ in their movement capacity, yet the causes of such difference are not completely understood. Some of the factors that usually determine the species movement capacity are body size, diet composition and thermoregulation capacity. The record  of movement across different environments has important implications not only for the conservation of bats but also for the ecological processes they perform, especially pollination and seed dispersal.

In Mediterranean ecosystems, the European rabbit is a keystone species that has declined dramatically, with profound implications for conservation and management. Predation and disease acting on juveniles are considered the likely causes. In the field, these processes are managed by removing predators, increasing cover to reduce predation risk and by vaccinating against myxomatosis. These manipulations can be costly and, when protected predators are killed, they can also be damaging to conservation interests. Our goal was to test the effectiveness of cover and vaccination on juvenile survival in two large enclosures, free of mammalian predators, by adding cover and vaccinating juveniles. Rabbit warrens were our experimental unit, with nine replicates of four treatments: control, cover, vaccination, and cover and vaccination combined. Our results showed that improved cover systematically increased juvenile rabbit survival, whereas vaccination had no clear effect and the interactive effect was negligible. Our experimental data suggest that improved cover around warrens is an effective way of increasing rabbit abundance in Mediterranean ecosystems, at least when generalist mammalian predators are scarce. In contrast the vaccination programme was of limited benefit, raising questions about its efficacy as a management tool.

Understanding conservation needs relies on robust estimates of key population parameters, such as survival, abundance and somatic growth. We investigated the somatic growth and abundance dynamics of 2 aggregations of immature green turtles, at Tortuga Bay and Puerto Manglar (Culebra, Puerto Rico), throughout 15 yr of capture-mark-recaptures. We used nonlinear models to investigate the effects of carapace length, sampling year, growth interval and the presence of fibropapillomas on growth rates, and used the size-specific growth rate function to estimate how long turtles remain at each bay. Abundances were estimated and compared with time-specific growth rate functions, to infer density-dependency effects on somatic growth rates, and trends in abundance were evaluated by fitting generalized linear models. We found foraging site specific growth rates and report the highest mean somatic growth rate for green turtles in the wild (6.1 ± 1.7 cm yr−1, at Puerto Manglar). The size-specific growth rate function was monotonic at both sites, with growth rates declining continuously with increasing carapace length. We inferred
minimum ages at maturity of 14 and 22 yr, for Puerto Manglar and Tortuga Bay turtles, respectively. Throughout the 15 yr of this study there was a positive trend in aggregation size at Puerto Manglar (mean annual increase of 10.9%), which was not observed at Tortuga Bay. Our study highlights the influence of geography and habitat quality on somatic growth rates, and delivers robust demographic estimates valuable for local and regional assessments of the conservation status of the green turtle.

Road construction creates new habitats for a variety of species. In intensive farming landscapes, road verges may be the only suitable habitat for rodents. However, little attention has been paid to other road-related landscape elements (RRLEs), such as excavation slopes or the central islands of roundabouts, and their importance in a rodent territory. This study investigated all types of RRLE in terms of rodent abundances and habitat quality. RRLEs were compared with the semi-natural elements of the studied landscape using a capture-mark-recapture protocol. Four species and 3,154 individuals were captured over a period of four months. Relative abundance and habitat quality were higher in RRLEs than in semi-natural elements. Mapping of the landscape showed that 86% of crop fields are accessible to Microtus arvalis (and almost 100% for Apodemus sylvaticus) from road verges. Our results highlight the importance of road verges and all other RRLEs in the conservation of species diversity in intensive farming landscapes.

Metapopulation models predicting the persistence of species on the verge of extinction in fragmented landscapes have to include local population dynamics. In this paper, we report on a 9-yr study in which a patchy population of the bog fritillary was monitored each year, with special focus on quantifying demographic parameters. We parameterised various constrained linear models (CLM) with capture-mark-recapture (CMR) data collected in the field each year and we tested the effects of several variables on demographic parameters. Selecting the best CLM, we estimated the mean and the variance of (1) individual parameters (survival and catchability) and (2) population features (population size, sex-ratio and recruitment). Survival was not related to the age of the individual but decreased continuously during the flight period, which means that lifetime expectancy is conversely related to the delay between the moment of the emergence of a given individual as compared to the emergence of the first adult in the population. Survival was lower in males than in females, as a consequence of male mate-locating behaviour. Daily population size fits a parabolic distribution in both sexes, males appearing, reaching their abundance peak and dying before females. Yearly variation in the sex-ratio is the consequence of the between-sex difference in the recruitment curve. Total adult population size shows large variations between years. Analysis of the relation between growth rate and abundance indicates density dependence, probably related to parasitism of the larval stages. Density at the equilibrium is about 200 adults/ha.