Alison Haupt

Though parasites are ubiquitous in marine ecosystems, predicting the abundance of parasites present within marine ecosystems has proven challenging due to the unknown effects of multiple interacting environmental gradients and stressors. Furthermore, parasites often are considered as a uniform group within ecosystems despite their significant diversity. We aim to determine the potential importance of multiple predictors of parasite abundance in coral reef ecosystems, including reef area, island area, human population density, chlorophyll-a, host diversity, coral cover, host abundance, and island isolation. Using a model selection approach within a database of more than 1200 individual fish hosts and their parasites from 11 islands within the Pacific Line Islands archipelago, we reveal that geographic gradients, including island area and island isolation, emerged as the best predictors of parasite abundance. Life history moderated the relationship; parasites with complex life cycles increased in abundance with increasing island isolation, while parasites with direct life cycles decreased with increasing isolation. Direct life cycle parasites increased in abundance with increasing island area, though complex life cycle parasite abundance was not associated with island area. This novel analysis of a unique dataset indicates that parasite abundance in marine systems cannot be predicted precisely without accounting for the independent and interactive effects of each parasite's life history and environmental conditions.

Variation in behavior within marine and terrestrial species can influence the functioning of the ecosystems they inhabit. However, the contribution of social behavior to ecosystem function remains underexplored. Many coral reef fish species provide potentially insightful models for exploring how social behavior shapes ecological function because they exhibit radical intraspecific variation in sociality within a shared habitat. Here, we provide an empirical exploration on how the ecological function of a shoaling surgeonfish (Acanthurus triostegus) may differ from that of solitary conspecifics on two Pacific coral reefs combining insight from behavioral observations, stable isotope analysis, and macronutrient analysis of gut and fecal matter. We detected important differences in how the social mode of A. triostegus affected its spatial and feeding ecology, as well as that of other reef fish species. Specifically, we found increased distance traveled and area covered by shoaling fish ...

Though parasites are ubiquitous in marine ecosystems, predicting the abundance of parasites present within marine ecosystems has proven challenging due to the unknown effects of multiple interacting environmental gradients and stressors. Furthermore, parasites often are considered as a uniform group within ecosystems despite their significant diversity. We aim to determine the potential importance of multiple predictors of parasite abundance in coral reef ecosystems, including reef area, island area, human population density, chlorophyll-a, host diversity, coral cover, host abundance, and island isolation. Using a model selection approach within a database of more than 1200 individual fish hosts and their parasites from 11 islands within the Pacific Line Islands archipelago, we reveal that geographic gradients, including island area and island isolation, emerged as the best predictors of parasite abundance. Life history moderated the relationship; parasites with complex life cycles increased in abundance with increasing island isolation, while parasites with direct life cycles decreased with increasing isolation. Direct life cycle parasites increased in abundance with increasing island area, though complex life cycle parasite abundance was not associated with island area. This novel analysis of a unique dataset indicates that parasite abundance in marine systems cannot be predicted precisely without accounting for the independent and interactive effects of each parasite's life history and environmental conditions.

Abstract Coastal ecosystems are exposed to multiple anthropogenic stressors such as fishing, pollution, and climate change. Ecosystem-based coastal management requires understanding where the combination of multiple stressors has large cumulative effects and where actions to address impacts are most urgently needed. However, the effects of multiple stressors on coastal and marine ecosystems are often non-linear and interactive. This complexity is not captured by commonly used spatial models for mapping human impacts. Flexible statistical and machine learning models like random forests have thus been used as an alternative modeling approach to identify important stressors and to make spatial predictions of their combined effects. However, tests of such models' prediction skill have been limited. Therefore, we tested how well ten statistical and machine learning methods predicted three ecological indicators of coastal marine ecosystem condition (kelp biodiversity, fish biomass, and rocky intertidal biodiversity) off California, USA. Spatial data representing anthropogenic stressors and ocean uses as well as natural gradients were used as predictors. The models' prediction errors were estimated by double spatial block cross-validation. The best models achieved mean squared errors about 25% lower than a null model for kelp biodiversity and fish biomass; none of the tested models worked well for rocky intertidal biodiversity. The models captured general trends, but not local variability of the indicators. For kelp biodiversity, the best performing method was principal components regression. For fish biomass, the best performing method was boosted regression trees. However, after tuning, this model did not include any interactions between stressors, and ridge regression (a constrained linear model) performed almost as well. While in theory flexible machine learning methods are required to represent the complex stressor-ecosystem state relationships revealed by experimental ecologists, with our data, this flexibility could not be harnessed because more flexible models overfitted due to small sample sizes and low signal-to-noise ratio. The main challenge for harnessing the flexibility of statistical and machine learning methods to link ecological indicators and anthropogenic stressors is obtaining more suitable data. In particular, better data describing the spatial and temporal distribution of human uses and stressors are needed. We conclude by discussing methodological implications for future research.

Eastern boundary current systems are among the most productive and lucrative ecosystems on Earth because they benefit from upwelling currents. Upwelling currents subsidize the base of the coastal food web by bringing deep, cold and nutrient‐rich water to the surface. As upwelling is driven by large‐scale atmospheric patterns, global climate change has the potential to affect a wide range of significant ecological processes through changes in water chemistry, water temperature, and the transport processes that influence species dispersal and recruitment. We examined long‐term trends in the frequency, duration, and strength of continuous upwelling events for the Oregon and California regions of the California Current System in the eastern Pacific Ocean. We then associated event‐scale upwelling with up to 21 years of barnacle and mussel recruitment, and water temperature data measured at rocky intertidal field sites along the Oregon coast. Our analyses suggest that upwelling events are...

Sexual harassment is a pervasive problem on oceanographic research vessels and while conducting fieldwork in general. A variety of factors contribute to inadequate protection against sexual harassment, such as poor training in prevention, support, and response; remoteness of field sites; academic hierarchies that reinforce uneven power dynamics that extend to fieldwork; and multi-institutional teams with distinct policies or reporting structures that can lead to confusion in reporting and responding to incidents in the field. In compromising individuals’ physical and mental health, sexual harassment can negatively affect research expeditions. For example, harassed individuals may decide to refrain from working on complicated team-based tasks, which can be a safety issue. A broader concern is that sexual harassment deters talented people from pursing or maintaining employment in ocean science. Harassment must be treated with the same gravity as research misconduct and safety policy i...

We used population genetics to assess historical and modern demography of the exploited wavy top snail, Megastraea undosa, which has a 5–10 day pelagic larval duration. Foot tissue was sampled from an average of 51 individuals at 17 sites across the range of M. undosa. Genetic structure at the mtDNA locus is strikingly high (ΦST of 0.19 across 1000 km), and a major cline occurs in northern Baja California (ΦCT of 0.29 between northern and southern populations). Genetic data indicate that the northern region is highly connected through larval dispersal, whereas the southern region exhibits low genetic struc-ture. However, additional analyses based on patterns of haplotype diversity and relationships among haplotypes indicate that M. undosa has likely recently expanded into the Southern California Bight or expanded from a small refugial population, and analysis using isolation by distance to calculate dispersal distance indicates surprisingly short estimates of dispersal from 30 m to ...

Large-scale research endeavors can be hindered by logistical constraints limiting the amount of available data. For example, global ecological questions require a global dataset, and traditional sampling protocols are often too inefficient for a small research team to collect an adequate amount of data. Citizen science offers an alternative by crowdsourcing data collection. Despite growing popularity, the community has been slow to embrace it largely due to concerns about quality of data collected by citizen scientists. Using the citizen science project Floating Forests (this http URL), we show that consensus classifications made by citizen scientists produce data that is of comparable quality to expert generated classifications. Floating Forests is a web-based project in which citizen scientists view satellite photographs of coastlines and trace the borders of kelp patches. Since launch in 2014, over 7,000 citizen scientists have classified over 750,000 images of kelp forests large...

Integrated assessment requires examination of factors across biological hierarchies, taxonomic groups, ocean-use sectors, management objectives, and scientific disciplines. The articles in this theme set represent attempts to clarify and elaborate upon what integrated assessments are, with a particular emphasis on how they are being implemented. The aim of this themed article set is to clarify the use of integratedassessment terminology and demonstrate, by presenting case studies, examples in which integrated ecosystem assessments serve as useful tools to implement ecosystem-based management (EBM) while also identifying challenges that must be overcome for this to succeed. In theory, EBM seeks to address the various natural and anthropogenic pressures faced by the key components of marine systems simultaneously. EBM also attempts to account for “cumulative impacts” that might otherwise be overlooked. Nascent attempts to implement EBM highlight the need—in practice—to address trade-o...

Human impacts on ecosystems can decouple the fundamental ecological relationships that create patterns of diversity in free-living species. Despite the abundance, ubiquity, and ecological importance of parasites, it is unknown whether the same decoupling effects occur for parasitic species. We investigated the influence of fishing on the relationship between host diversity and parasite diversity for parasites of coral reef fishes on three fished and three unfished islands in the central equatorial Pacific. Fishing was associated with a shallowing of the positive host-diversity-parasite-diversity relationship. This occurred primarily through negative impacts of fishing on the presence of complex life-cycle parasites, which created a biologically impoverished parasite fauna of directly transmitted parasites resilient to changes in host biodiversity. Parasite diversity appears to be decoupled from host diversity by fishing impacts in this coral reef ecosystem, which suggests that such ...

... Guzman-del-Proo, Elisa Serviere, Rebecca Martone, Laura Gonzalez, Courtney Abshire, Tania Penas, Jorge Belmar, Jorge Carrillo, Fernando Lopez ... The entire Fio lab – Becca Martone, Chelsea Wood, Kristy Kroeker, Ashley Greenley Fio Micheli, Carrie Kappel, Kim Heiman ...

Internal waves of depression were observed propagating along‐shelf and into northern Monterey Bay, California (CA) on the inner shelf. These waves had amplitudes approximately equal to the thermocline depth (∼4 m), and were unstable to shear and mix the thermocline. Isopycnal gradient spectra showed that the wave packets lead to an elevated mean dissipation rate of E = 2.63 × 10−5 m3 s−2 for up to 2 hours after wave passage. The proximity to the surface created strong surface convergences that can actively transport buoyant material, such as plankton, back into the bay. The wave packets were observed regularly over the upwelling season across multiple years suggesting they may have large effects on the documented spatial variation of phytoplankton and larvae on the inner shelf. The timing of the waves suggests they are not formed by tides interacting with bathymetry, but are generated by buoyant plume propagation.

Eastern boundary current systems are among the most productive and lucrative ecosystems on Earth because they benefit from upwelling currents. Upwelling currents subsidize the base of the coastal food web by bringing deep, cold and nutrient-rich water to the surface. As upwelling is driven by large-scale atmospheric patterns, global climate change has the potential to affect a wide range of significant ecological processes through changes in water chemistry, water temperature, and the transport processes that influence species dispersal and recruitment. We examined long-term trends in the frequency, duration, and strength of continuous upwelling events for the Oregon and California regions of the California Current System in the eastern Pacific Ocean. We then associated event-scale upwelling with up to 21 years of barnacle and mussel recruitment, and water temperature data measured at rocky intertidal field sites along the Oregon coast. Our analyses suggest that upwelling events are...

Environmental heterogeneity can have important effects on the structure of natural communities. For example, in marine ecosystems, variation in climate and oceanographic conditions results in large fluctuations in upwelling intensity and can influence primary production and recruitment of fish and invertebrates. This patchiness in environmental conditions can lead to variation in community similarity at particular scales. Knowledge of scales of variability in community structure and dynamics may help improve the ability of ...

Surface Conditions Drive Changes In Groundfish Species' Populations Along California Coast by Danielle Marie Fabian Master of Science in Environmental Science California State University Monterey Bay, 2020 Oceans display physical variability over a range of temporal and spatial scales, influencing factors such as larval dispersal, nutrient availability, species migration, and biodiversity. Such variability is vulnerable to the effects of climate change. Larvae and juveniles are particularly susceptible to changes in ocean variability, and changes in the early life stages of species populations ultimately impacts the adult stages. Physical consequences stemming from climate driven variability, including a loss of key prey species and changes in depth distributions of vulnerable fish species, could ultimately impact ecosystem services and threaten human food security and fisheries. The deep sea benthopelagic groundfish play significant roles in biogeochemical and ecological proces...

"Borne out of a collective movement towards ecosystem-based management (EBM), multispecies and multi-sector scientific assessments of the ocean are emerging around the world. In the USA, integrated ecosystem assessments (IEAs) were formally defined 5 years ago to serve as a scientific foundation for marine EBM. As outlined by the US National Oceanic Atmospheric Administration in 2008, an IEA is a cyclical process consisting of setting goals and targets, defining indicators, analysing status, trends, and risk, and evaluating alternative potential future management and environmental scenarios to enhance information needed for effective EBM. These steps should be hierarchical, iterative, non-prescriptive about technical implementation, and adaptable to existing information for any ecosystem. Despite these strengths and some initial successes, IEAs and EBM have yet to be fully realized in the USA. We propose eight tenets that can be adopted by scientists, policy-makers, and managers to enhance the use of IEAs in implementing EBM. These tenets include (i) engage with stakeholders, managers, and policy-makers early, often, and continually; (ii) conduct rigorous human dimensions research; (iii) recognize the importance of transparently selecting indicators; (iv) set ecosystem targets to create a system of EBM accountability; (v) establish a formal mechanism(s) for the review of IEA science; (vi) serve current management needs, but not at the expense of more integrative ocean management; (vii) provide a venue for EBM decision-making that takes full advantage of IEA products; and (viii) embrace realistic expectations about IEA science and its implementation. These tenets are framed in a way that builds on domestic and international experiences with ocean management. With patience, persistence, political will, funding, and augmented capacity, IEAs will provide a general approach for allowing progressive science to lead conventional ocean management to new waters.
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We used population genetics to assess historical and modern demography of the exploited wavy top snail, Megastraea undosa, which has a 5–10 day pelagic larval duration. Foot tissue was sampled from an average of 51 individuals at 17 sites across the range of M. undosa. Genetic structure at the mtDNA locus is strikingly high (ΦST of 0.19 across 1000 km), and a major cline occurs in northern Baja California (ΦCT of 0.29 between northern and southern populations). Genetic data indicate that the northern region is highly connected through larval dispersal, whereas the southern region exhibits low genetic structure. However, additional analyses based on patterns of haplotype diversity and relationships among haplotypes indicate that M. undosa has likely recently expanded into the Southern California Bight or expanded from a small refugial population, and analysis using isolation by distance to calculate dispersal distance indicates surprisingly short estimates of dispersal from 30 m to 3 km. This scenario of a northward expansion and limited larval dispersal is supported by coalescent-based simulations of genetic data. The different patterns of genetic variation between northern and southern populations are likely artifacts of evolutionary history rather than differences in larval dispersal and this may have applications to management of this species. Specifically, these data can help to inform the scale at which this species should be managed, and given the potentially very small dispersal distances, this species should be managed at local scales. Consideration of the evolutionary history of target species allows for a more accurate interpretation of genetic data for management.

Many species vary in their ecology across their geographic ranges in response to gradients in environmental conditions. Such variation, which can influence life history traits and subsequent demography of populations, usually occurs over large spatial scales. However, describing and understanding the causes of such variation is difficult precisely because it occurs over such large spatial scales. In this study, we document spatial variation in the ecology of a common reef fish, Stegastes beebei, in the Galápagos Islands and test a number of potential causal mechanisms. The pattern resembles that seen in latitudinal variation: individuals are larger, occur in higher densities, and live longer in the coldest region of the islands than those in the warmest region. However, in this system, demography varies among regional populations separated by <150 km. Preferred nutritious algae are more available in the cold region and comprise a greater proportion of the diet of fish in this region. Per gram reproductive effort appears to be strongly related to temperature, despite differences in the gross magnitude and timing of reproduction in different regions. A model of reproductive output suggests that fish in the warmest region are allocating a greater proportion of available energy to reproduction, resulting in apparent regional life history tradeoffs. Our data suggest that regional demographic differences in S. beebei may be driven by a combination of variation in food availability and an environmentally mediated life history tradeoff.