WO2020238763A1 - 核酸、药物组合物与缀合物及制备方法和用途 - Google Patents
核酸、药物组合物与缀合物及制备方法和用途 Download PDFInfo
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Definitions
- the present disclosure relates to a nucleic acid, pharmaceutical composition and siRNA conjugate capable of inhibiting the expression of complement protein 5 (C5) gene.
- the present disclosure also relates to the preparation method and application of the nucleic acid, the pharmaceutical composition and the siRNA conjugate.
- MG Myasthenia gravis
- AchR-Ab acetylcholine receptor antibody
- AChR acetylcholine receptor
- Complement protein (C5) is one of the key targets for the treatment of myasthenia gravis.
- AchR-Ab binds to AchR and massively destroys AchR through complement-mediated cell membrane lysis, resulting in a prominent posterior membrane transmission acetylcholine barrier and muscle weakness.
- Studies have shown that by specifically binding the drug to the complement protein C5, C5 is prevented from cleaving into C5a and C5b, thereby preventing the formation of the membrane attack complex, blocking the destruction of the membrane attack complex on the neuromuscular junction and subsequent pro-inflammatory factors Produce, thereby exerting immunosuppressive effect and treating myasthenia gravis.
- Small interfering RNA can be based on the mechanism of RNA interference (RNAi) to inhibit or block the expression of the target gene of interest in a sequence-specific manner, thereby achieving the purpose of treating diseases. If it can suppress the expression of C5 gene and block the production of complement protein from the mRNA level, it will undoubtedly be the most ideal treatment method to maintain the body's normal immune function and inhibit the occurrence of abnormal immune responses.
- RNAi RNA interference
- siRNA conjugates provided in the present disclosure can specifically inhibit the expression of C5 gene, and specifically target the liver, inhibit the expression of C5 gene in the liver, and realize the treatment or prevention of muscular gravis Powerless.
- the inventors have also invented siRNA and pharmaceutical compositions with higher activity.
- the present disclosure provides a siRNA conjugate, the siRNA conjugate having a structure as shown in formula (308):
- n1 is an integer selected from 1-3, n3 is an integer selected from 0-4; m1, m2 or m3 are independently an integer selected from 2-10; R 10 , R 11 , R 12 , R 13 , R 14 or R 15 are each independently H, or selected from the group consisting of C 1 -C 10 alkyl, C 1 -C 10 haloalkyl, and C 1 -C 10 alkoxy;
- R 3 is a group represented by the formula A59:
- E 1 is OH, SH or BH 2 ;
- Nu is siRNA, the siRNA contains a sense strand and an antisense strand, each nucleotide in the siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleotide sequence I , The antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, the nucleotide sequence I and the The nucleotide sequence II is selected from the following group i)-vi):
- nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO:1 are equal in length, and have no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 2
- the nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
- Z 1 is A
- Z 2 is U
- the nucleotide sequence I contains a nucleotide Z 3 whose position corresponds to Z 1
- the nucleotide sequence II contains a nucleoside whose position corresponds to Z 2 Acid Z 4 , where Z 4 is the first nucleotide at the 5'end of the antisense strand;
- nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 61 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 62
- the nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
- Z 5 is A
- Z 6 is U
- the nucleotide sequence I contains a nucleotide Z 7 whose position corresponds to Z 5
- the nucleotide sequence II contains a nucleoside whose position corresponds to Z 6 Acid Z 8 , said Z 8 being the first nucleotide at the 5'end of the antisense strand;
- nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 121 are the same in length and have no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 122
- nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
- Z 9 is A
- Z 10 is U
- the nucleotide sequence I contains the nucleotide Z 11 whose position corresponds to Z 9
- the nucleotide sequence II contains the nucleoside whose position corresponds to Z 10 Acid Z 12 , where Z 12 is the first nucleotide at the 5'end of the antisense strand;
- nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 181 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 182
- nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
- Z 13 is A
- Z 14 is U
- the nucleotide sequence I contains the nucleotide Z 15 whose position corresponds to Z 13
- the nucleotide sequence II contains the nucleoside whose position corresponds to Z 14 Acid Z 16 , where Z 16 is the first nucleotide at the 5'end of the antisense strand;
- nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 241 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 242
- nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
- Z 17 is A
- Z 18 is U
- the nucleotide sequence I contains the nucleotide Z 19 whose position corresponds to Z 17
- the nucleotide sequence II contains the nucleoside whose position corresponds to Z 18 Acid Z 20 , said Z 20 being the first nucleotide at the 5'end of the antisense strand;
- nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 301 have the same length and no more than 3 nucleotide differences, and the nucleotide sequence II is the same as SEQ ID NO: 302
- the nucleotide sequences shown are equal in length and not more than 3 nucleotide differences:
- Z 21 is A
- Z 22 is U
- the nucleotide sequence I contains the nucleotide Z 23 whose position corresponds to Z 21
- the nucleotide sequence II contains the nucleoside whose position corresponds to Z 22 Acid Z 24 , said Z 24 being the first nucleotide at the 5'end of the antisense strand;
- M 1 represents the targeting group
- the present disclosure provides an siRNA capable of inhibiting C5 gene expression, the siRNA containing a sense strand and an antisense strand, and each nucleotide in the sense strand and the antisense strand is independently It is a fluorinated modified nucleotide or a non-fluorinated modified nucleotide; the sense strand contains a nucleotide sequence I, the antisense strand contains a nucleotide sequence II, and the nucleotide sequence I And the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, and the fluoro-modified nucleotides are located in the nucleotide sequence I and the nucleotide sequence II, and follow the 5'end to 3 The direction of the end, in the sense strand, the nucleotides at positions 7, 8, and 9 of the nucleotide sequence I are fluorinated modified nucleotides, and the nucleosides at the remaining positions
- the present disclosure provides a pharmaceutical composition containing the above-mentioned siRNA of the present disclosure and a pharmaceutically acceptable carrier.
- the present disclosure provides an siRNA conjugate containing the siRNA provided in the present disclosure and a conjugating group conjugated to the siRNA.
- the present disclosure provides the use of the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure in the preparation of a medicament for the treatment and/or prevention of myasthenia gravis.
- the present disclosure provides a method for treating and/or preventing myasthenia gravis, the method comprising administering an effective amount of the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure to a patient suffering from Subjects with myasthenia gravis.
- the present disclosure provides a method for inhibiting C5 gene expression in hepatocytes, the method comprising combining an effective amount of the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure with the liver. Cell contact.
- the present disclosure provides a kit that contains the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure.
- siRNA, pharmaceutical composition and siRNA conjugate provided in the present disclosure have good stability, high C5 mRNA inhibitory activity, low off-target effect, and/or can significantly treat or relieve the symptoms of myasthenia gravis.
- the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure shows excellent target mRNA inhibitory activity in in vitro cell experiments. In some embodiments, the siRNA, pharmaceutical composition, or siRNA conjugate provided by the present disclosure exhibits at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% in liver cells. Or 95% target mRNA inhibition rate.
- the siRNA provided in the present disclosure shows a high inhibitory activity in HepG2 cells, and the IC 50 for C5 mRNA is between 1.494-9.688 nM.
- the fluorescently labeled siRNA conjugate of the present disclosure was injected subcutaneously into C57 mice, and the mice were subjected to real-time fluorescence imaging to observe the distribution of fluorescence in the organs. The mice were sacrificed for 48 hours. Organ anatomy revealed that almost all siRNA conjugates aggregated in the liver, indicating that the siRNA conjugate provided in the present disclosure can effectively deliver siRNA specifically to the liver, indicating that the conjugate can specifically inhibit targets in the liver. mRNA expression.
- the siRNA, pharmaceutical composition, or siRNA conjugate provided in the present disclosure may have higher stability and/or higher activity in vivo. In some embodiments, the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure exhibits at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 95% in vivo. % Inhibition rate of target mRNA expression. In some embodiments, the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure exhibits at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 95% in vivo. % C5mRNA expression inhibition rate.
- the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure exhibits at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 95% in vivo. % Inhibition rate of C5mRNA expression in the liver. In some embodiments, the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure exhibits at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 95% in vivo. % Inhibition rate of C5mRNA expression in the liver in animal models. In some embodiments, the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure exhibits at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or 95% in vivo. Inhibition rate of C5mRNA expression in the liver in% of human subjects.
- the siRNA, pharmaceutical composition or siRNA conjugate provided in the present disclosure does not show significant off-target effects.
- Off-target effects may be, for example, suppression of normal expression of genes other than target genes. It is believed that if the binding/inhibition of off-target gene expression is less than 50%, 40%, 30%, 20%, or 10% compared to the target gene effect, the off-target effect is not significant.
- siRNA, pharmaceutical composition and siRNA conjugate provided in the present disclosure can inhibit the expression of C5 mRNA, effectively treat and/or prevent myasthenia gravis symptoms, and have good application prospects.
- Figures 1A-1H sequentially show dose-effect curves fitted according to the relative expression levels of C5 mRNA in HepG2 cells after transfection of different conjugates 1-8.
- Fig. 2A is a fluorescence imaging photograph of various organs in C57 mice after administration of 5ml/kg of 1 ⁇ PBS, 3mg/kg Cy5-siRNA 1 or 3mg/kg Cy5-conjugate 1 48 hours.
- Fig. 2B is a fluorescence imaging photograph of various organs in C57 mice after being administered with 5 ml/kg of 1 ⁇ PBS, 3 mg/kg Cy5-siRNA 2 or 3 mg/kg Cy5-conjugate 2 48 hours.
- C5 mRNA refers to mRNA with the sequence shown in Genbank registration number M57729.1.
- target gene used in the present disclosure refers to a gene capable of transcribing the aforementioned C5 mRNA
- target mRNA refers to the aforementioned C5 mRNA.
- the capital letters C, G, U, A represent the base composition of nucleotides;
- the lowercase letter m represents that the adjacent nucleotide to the left of the letter m is a methoxy group Modified nucleotides;
- a lowercase letter f indicates that the adjacent nucleotide to the left of the letter f is a fluoro-modified nucleotide;
- a lowercase letter s indicates that between the two adjacent nucleotides to the left and right of the letter s It is a phosphorothioate group connection;
- P1 indicates that the adjacent nucleotide to the right of P1 is a 5'-phosphate nucleotide or a nucleotide modified by a 5'-phosphate analogue, and
- the letter combination VP represents the letter combination VP
- the adjacent nucleotide on the right is a vinyl phosphate modified nucleotide
- the letter combination Ps indicates that the adjacent nucleotide
- fluoro-modified nucleotide refers to a nucleotide in which the hydroxyl group at the 2'position of the ribose group of the nucleotide is replaced by fluorine
- non-fluoro-modified nucleotide refers to Nucleotides or nucleotide analogs formed by substituting a non-fluorine group for the hydroxyl group at the 2'position of the ribose group of a nucleotide.
- Nucleotide analogue refers to a nucleic acid that can replace nucleotides, but has a structure different from adenine ribonucleotides, guanine ribonucleotides, cytosine ribonucleotides, uracil ribonucleotides or thymus The group of pyrimidine deoxyribonucleotides. Such as heteronucleotide, bridged nucleotide (BNA) or acyclic nucleotide.
- the "methoxy-modified nucleotide” refers to a nucleotide formed by replacing the 2'-hydroxyl group of the ribose group with a methoxy group.
- the expressions "complementary” or “reverse complement” can be used interchangeably, and have the meaning well known to those skilled in the art, that is, in a double-stranded nucleic acid molecule, the bases of one strand are connected to the other strand. The bases on are paired in a complementary manner.
- the purine base adenine (A) is always paired with the pyrimidine base thymine (T) (or uracil (U) in RNA);
- the purine base guanine (C) is always paired with the pyrimidine base Cytosine (G) matches.
- Each base pair includes a purine and a pyrimidine.
- mismatch in the art means that in a double-stranded nucleic acid, bases at corresponding positions are not paired in a complementary manner.
- substantially reverse complementary means that there are no more than 3 base mismatches between the two nucleotide sequences involved; “substantially reverse complementary” “Means that there is no more than one base mismatch between two nucleotide sequences; “complete reverse complement” means that there is no base mismatch between two nucleotide sequences.
- nucleotide difference between one nucleotide sequence and another nucleotide sequence means that the base type of the nucleotide at the same position has changed compared with the latter. For example, when one nucleotide base in the latter is A, when the corresponding nucleotide base at the same position in the former is U, C, G, or T, it is regarded as one of the two nucleotide sequences There is a nucleotide difference at this position. In some embodiments, when an abasic nucleotide or its equivalent is substituted for the nucleotide at the original position, it can also be considered that there is a nucleotide difference at that position.
- the nucleoside monomer refers to the preparation method according to the The type and sequence of nucleotides in the siRNA or siRNA conjugate, the modified or unmodified nucleoside phosphoramidite monomer used in the solid phase synthesis of phosphoramidites phosphoramidites).
- Phosphoramidite solid phase synthesis is a method used in RNA synthesis well known to those skilled in the art.
- the nucleoside monomers used in the present disclosure are all commercially available.
- conjugate means that two or more chemical moieties each having a specific function are connected to each other in a covalent manner; correspondingly, “conjugate” is Refers to the compound formed by covalent linkage between the various chemical parts.
- siRNA conjugate refers to a compound formed by covalently linking one or more chemical moieties with specific functions to siRNA.
- siRNA conjugate of the present disclosure is also referred to simply as “conjugate”.
- An siRNA conjugate should be understood as a general term for multiple siRNA conjugates or an siRNA conjugate represented by a certain chemical formula according to the context.
- conjuggated molecule should be understood as a specific compound that can be conjugated to siRNA through a reaction, and finally form the siRNA conjugate of the present disclosure.
- alkyl refers to straight and branched chains having a specified number of carbon atoms, the number is usually 1 to 20 carbon atoms, such as 1 to 10 carbon atoms, such as 1 to 8 Or 1 to 6 carbon atoms.
- C 1 -C 6 alkyl groups include straight and branched chain alkyl groups of 1 to 6 carbon atoms.
- alkyl residue having a specific number of carbons it is intended to cover all branched and straight chain forms having that number of carbons; therefore, for example, "butyl” means including n-butyl, sec-butyl , Isobutyl and tert-butyl; "propyl” includes n-propyl and isopropyl.
- Alkylene is a subset of alkyl and refers to residues that are the same as alkyl but have two points of attachment.
- alkenyl refers to an unsaturated branched or unbranched alkyl group having at least one carbon-carbon double bond, which is obtained from adjacent carbon atoms of the parent alkyl group. Obtained by removing one molecule of hydrogen. The group can be in the cis or trans configuration of the double bond.
- alkenyl groups include but are not limited to: vinyl; propenyl, such as prop-1-en-1-yl, prop-1-en-2-yl, prop-2-en-1-yl (allyl Group), prop-2-en-2-yl; butenyl, such as but-1-en-1-yl, but-1-en-2-yl, 2-methylprop-1-ene-1- But-2-en-1-yl, but-2-en-2-yl, but-1,3-dien-1-yl, but-1,3-dien-2-yl, etc.
- alkenyl groups have 2 to 20 carbon atoms, while in other embodiments, 2 to 10, 2 to 8, or 2 to 6 carbon atoms.
- Alkenylene is a subset of alkenyl and refers to the same residue as alkenyl but with two points of attachment.
- alkynyl refers to an unsaturated branched or unbranched alkyl group having at least one carbon-carbon triple bond, which is obtained from adjacent carbon atoms of the parent alkyl group. Obtained by removing two molecules of hydrogen.
- Typical alkynyl groups include but are not limited to: ethynyl; propynyl, such as prop-1-yn-1-yl, prop-2-yn-1-yl; butynyl, such as but-1-yn- 1-yl, but-1-yn-3-yl, but-3-yn-1-yl, etc.
- the alkynyl group has 2 to 20 carbon atoms, and in other embodiments, 2 to 10, 2 to 8, or 2 to 6 carbon atoms.
- Alkynylene is a subset of alkynyl and refers to residues that are the same as alkynyl but have two points of attachment.
- alkoxy refers to an alkyl group with a specified number of carbon atoms connected through an oxygen bridge, for example, methoxy, ethoxy, propoxy, isopropoxy, n-butoxy, S-butoxy, tert-butoxy, pentyloxy, 2-pentyloxy, isopentyloxy, neopentyloxy, hexyloxy, 2-hexyloxy, 3-hexyloxy, 3-methyl Pentyloxy and so on.
- Alkoxy groups generally have 1 to 10, 1 to 8, 1 to 6, or 1 to 4 carbon atoms connected by oxygen bridges.
- aryl refers to a group derived from an aromatic monocyclic or polycyclic hydrocarbon ring system by removing hydrogen atoms from ring carbon atoms.
- the aromatic monocyclic or polycyclic hydrocarbon ring system contains only hydrogen atoms and 6 to 18 carbon atoms, wherein at least one ring in the ring system is completely unsaturated, that is, contains a ring according to Hückel's theory, Delocalized (4n+2) ⁇ -electron system.
- Aryl groups include, but are not limited to, phenyl, fluorenyl, and naphthyl groups.
- Arylene is a subset of aryl and refers to residues that are the same as aryl but have two points of attachment.
- halogen substituent or halogen refers to fluoro, chloro, bromo or iodo, and the term “halogen” includes fluoro, chloro, bromo or iodo.
- haloalkyl refers to an alkyl group as defined above in which the specified number of carbon atoms is replaced by one or more halogen atoms up to the maximum allowable number.
- haloalkyl include, but are not limited to, trifluoromethyl, difluoromethyl, 2-fluoroethyl, or pentafluoroethyl.
- Heterocyclyl refers to a stable 3- to 18-membered non-aromatic cyclic group containing 2-12 carbon atoms and 1-6 heteroatoms selected from nitrogen, oxygen or sulfur. Unless otherwise specified in the specification, heterocyclic groups are monocyclic, bicyclic, tricyclic, or tetracyclic ring systems, and may include fused or bridged ring systems. The heteroatoms in the heterocyclic group may be optionally oxidized. One or more nitrogen atoms (if present) are optionally quaternized. The heterocyclic group is partially saturated or fully saturated. The heterocyclic group can be connected to the rest of the molecule through any ring atom.
- heterocyclic groups include, but are not limited to: dioxanyl, thienyl[1,3]dithianyl (thienyl[1,3]dithianyl), decahydroisoquinolinyl, imidazolinyl, imidazolidine Group, isothiazolidinyl, isoxazolidinyl, morpholinyl, octahydroindolyl, octahydroisoindolyl, 2-oxapiperazinyl, 2-oxapiperidinyl, 2-oxa Pyrrolidinyl, oxazolidinyl, piperidinyl, piperazinyl, 4-piperidinone, pyrrolidinyl, pyrazolidinyl, quinuclidinyl, thiazolidinyl, tetrahydrofuranyl, trithianyl (trithianyl) ), tetrahydropyranyl, thiomorph
- Heteroaryl refers to a group derived from a 3- to 18-membered aromatic ring radical, containing 2 to 17 carbon atoms and 1 to 6 heteroatoms selected from nitrogen, oxygen and sulfur.
- a heteroaryl group can be a monocyclic, bicyclic, tricyclic or tetracyclic ring system, wherein at least one ring in the ring system is fully unsaturated, that is, contains a cyclic delocalization according to Hückel's theory (4n +2) ⁇ -electron system.
- Heteroaryl groups include fused or bridged ring systems. The heteroatoms in the heteroaryl group are optionally oxidized.
- heteroaryl group is attached to the rest of the molecule through any ring atom.
- heteroaryl groups include, but are not limited to: azepinyl, acridinyl, benzimidazolyl, benzindolyl, 1,3-benzodiaxazolyl, benzofuranyl, benzene Oxazolyl, benzo[d]thiazolyl, benzothiadiazolyl, benzo[b][1,4]dioxepinyl (benzo[b][1,4]dioxepinyl), benzo[ b][1,4]oxazinyl (benzo[b][1,4]oxazinyl), 1,4-benzodioxanyl (1,4-benzodioxanyl), benzonaphthofuranyl, benzo Oxazolyl, benzodioxolyl, benzodioxin
- hydroxyl protecting groups can be used in this disclosure.
- the protective group makes the chemical functional group insensitive to specific reaction conditions, and can be added to and removed from the functional group in the molecule without substantially damaging the rest of the molecule.
- Representative hydroxyl protecting groups are disclosed in Beaucage et al., Tetrahedron 1992, 48, 2223-2311, and Greene and Wuts, Protective Groups in Organic Synthesis, Chapter 2, 2ded, John Wiley & Sons, New York, 1991, by way of reference Each of the above documents is incorporated into this article in its entirety.
- the protecting group is stable under basic conditions, but can be removed under acidic conditions.
- non-exclusive examples of hydroxyl protecting groups that can be used herein include dimethoxytrityl (DMT), monomethoxytrityl, 9-phenylxanthene-9-yl (Pixyl) or 9-(p-methoxyphenyl)xanthene-9-yl (Mox).
- non-exclusive examples of hydroxyl protecting groups that can be used herein include Tr (trityl), MMTr (4-methoxytrityl), DMTr (4,4'-dimethoxy Trityl) or TMTr (4,4',4"-trimethoxytrityl).
- subject refers to any animal, such as a mammal or marsupial.
- Subjects of the present disclosure include, but are not limited to, humans, non-human primates (for example, rhesus monkeys or other types of macaques), mice, pigs, horses, donkeys, cattle, sheep, rats, or any kind of poultry .
- treatment refers to a method of obtaining beneficial or desired results, including but not limited to therapeutic benefits.
- “Therapeutic benefit” means eradicating or improving the underlying barriers being treated.
- therapeutic benefits are obtained by eradicating or improving one or more physical symptoms associated with the underlying disorder, thereby observing improvement in the subject, although the subject may still be afflicted by the underlying disorder.
- prevention refers to methods of obtaining beneficial or desired results, including but not limited to preventive benefits.
- siRNA conjugates or compositions can be administered to subjects who are at risk of suffering from a specific disease, or to subjects who report one or more physiological symptoms of the disease, even if the disease may be The diagnosis has not yet been made.
- the present disclosure provides six siRNAs capable of inhibiting C5 gene expression.
- the siRNA of the present disclosure contains a nucleotide group as a basic structural unit, and those skilled in the art know that the nucleotide group contains a phosphate group, a ribose group and a base, which will not be repeated here.
- the siRNA of the present disclosure comprises a sense strand and an antisense strand, the length of the sense strand and the antisense strand are the same or different, the length of the sense strand is 19-23 nucleotides, and the length of the antisense strand is 19-26 Nucleotides.
- the length ratio of the siRNA sense strand and antisense strand provided by the present disclosure can be 19/19, 19/20, 19/21, 19/22, 19/23, 19/24, 19/25, 19/26, 20/20, 20/21, 20/22, 20/23, 20/24, 20/25, 20/26, 21/20, 21/21, 21/22, 21/23, 21/24, 21/ 25, 21/26, 22/20, 22/21, 22/22, 22/23, 22/24, 22/25, 22/26, 23/20, 23/21, 23/22, 23/23, 23/24, 23/25 or 23/26.
- the length ratio of the siRNA sense strand and antisense strand is 19/21, 21/23, or 23/25.
- the siRNA may be the first siRNA.
- the first siRNA contains a sense strand and an antisense strand, each nucleotide in the first siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I is the same length as the nucleotide sequence shown in SEQ ID NO: 1 and has no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 2 The length is equal, and no more than 3 nucleotide differences:
- Z 1 is A
- Z 2 is U
- the nucleotide sequence I contains a nucleotide Z 3 whose position corresponds to Z 1
- the nucleotide sequence II contains a nucleoside whose position corresponds to Z 2 Acid Z 4
- the Z 4 is the first nucleotide at the 5'end of the antisense strand.
- positional correspondence refers to the same position in the nucleotide sequence from the same end of the nucleotide sequence.
- the first nucleotide at the 3'end of the nucleotide sequence I is the nucleotide whose position corresponds to the first nucleotide at the 3'end of SEQ ID NO:1.
- the sense strand only includes nucleotide sequence I
- the antisense strand only includes nucleotide sequence II.
- nucleotide sequence I there is no more than one nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO:1, and/or the nucleotide sequence II and SEQ ID NO:1 ID NO: No more than one nucleotide difference between the nucleotide sequences shown in 2.
- the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 2 includes the difference at position Z 4 , and Z 4 is selected from A, C or G. In some embodiments, the nucleotide difference is a difference at the Z 4 position, and Z 4 is selected from A, C, or G. In some embodiments, Z 3 is a nucleotide that is complementary to Z 4 . SiRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of siRNA, and these siRNAs are also within the protection scope of the present disclosure.
- the nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary; the substantially reverse complement refers to two nuclei There are no more than 3 base mismatches between the nucleotide sequences; the substantially reverse complementation refers to the presence of no more than 1 base mismatch between two nucleotide sequences; complete reverse complementarity It means that there is no base mismatch between two nucleotide sequences.
- nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 3
- nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 4:
- Z 4 is the first nucleotide at the 5'end of the antisense strand
- Z 3 is selected from A, U, G or C
- Z 4 is a nucleotide complementary to Z 3 ; in some embodiments Among them, Z 3 is A and Z 4 is U.
- the sense strand further contains a nucleotide sequence III
- the antisense strand further contains a nucleotide sequence IV.
- the length of the nucleotide sequence III and the nucleotide sequence IV are each 1-4 cores. Nucleotide; the nucleotide sequence III and the nucleotide sequence IV are of equal length and are substantially reverse complementary or completely reverse complementary; the nucleotide sequence III is connected to the 5 of the nucleotide sequence I 'End, the nucleotide sequence IV is connected to the 3'end of the nucleotide sequence II.
- the nucleotide sequence IV is substantially reverse-complementary or completely reverse-complementary to the second nucleotide sequence
- the second nucleotide sequence refers to the sequence in the target mRNA with the SEQ ID NO: 1 represents a nucleotide sequence that is adjacent to the 5'end of the nucleotide sequence and has the same length as the nucleotide sequence IV.
- the length of the nucleotide sequence III and the nucleotide sequence IV is 1 nucleotide, the base of the nucleotide sequence III is U, and the base of the nucleotide sequence IV is A ; At this time, the length ratio of the sense strand and the antisense strand is 20/20; or, the length of the nucleotide sequence III and IV are both 2 nucleotides, according to the direction from the 5'end to the 3'end, the nucleoside
- the base composition of acid sequence III is CU, and the base composition of nucleotide sequence IV is AG; at this time, the length ratio of the sense strand and the antisense strand is 21/21; or, the length of the nucleotide sequences III and IV Both are 3 nucleotides.
- the base composition of nucleotide sequence III is UCU, and the base composition of nucleotide sequence IV is AGA; at this time, the sense strand and the reverse The length ratio of the sense strand is 22/22; alternatively, the lengths of nucleotide sequences III and IV are both 4 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is UUCU, the base composition of nucleotide sequence IV is AGAA; at this time, the length ratio of the sense strand and the antisense strand is 23/23.
- the length of the nucleotide sequence III and the nucleotide sequence IV is 2 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is CU , The base composition of nucleotide sequence IV is AG; at this time, the length ratio of the sense strand and the antisense strand is 21/21.
- nucleotide sequence III and the nucleotide sequence IV are completely reverse complementary, therefore, given the base of the nucleotide sequence III, the base of the nucleotide sequence IV is also determined.
- the siRNA may be a second siRNA.
- the second siRNA contains a sense strand and an antisense strand, each nucleotide in the second siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I is the same length as the nucleotide sequence shown in SEQ ID NO: 61 and has no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 62 The length is equal, and no more than 3 nucleotide differences:
- Z 5 is A
- Z 6 is U
- the nucleotide sequence I contains a nucleotide Z 7 whose position corresponds to Z 5
- the nucleotide sequence II contains a nucleoside whose position corresponds to Z 6 Acid Z 8
- the Z 8 is the first nucleotide at the 5'end of the antisense strand.
- the sense strand only includes nucleotide sequence I
- the antisense strand only includes nucleotide sequence II.
- nucleotide sequence I there is no more than 1 nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 61, and/or the nucleotide sequence II and SEQ ID NO: No more than one nucleotide difference between the nucleotide sequences shown in 62.
- the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 62 includes the difference at the Z 8 position, and Z 8 is selected from A, C or G. In some embodiments, the nucleotide difference is a difference at the Z 8 position, and Z 8 is selected from A, C, or G. In some embodiments, Z 7 is a nucleotide that is complementary to Z 8 . SiRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of siRNA, and these siRNAs are also within the protection scope of the present disclosure.
- nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary.
- nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 63
- nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 64:
- Z 8 is the first nucleotide at the 5'end of the antisense strand
- Z 7 is selected from A, U, G, or C
- Z 8 is a nucleotide complementary to Z 7 ; in some embodiments Among them, Z 7 is A and Z 8 is U.
- the sense strand further contains a nucleotide sequence III
- the antisense strand further contains a nucleotide sequence IV.
- the length of the nucleotide sequence III and the nucleotide sequence IV are each 1-4 cores.
- Nucleotide; the nucleotide sequence III and the nucleotide sequence IV are of equal length and are substantially reverse complementary or completely reverse complementary; the nucleotide sequence III is connected to the 5 of the nucleotide sequence I 'End, the nucleotide sequence IV is connected to the 3'end of the nucleotide sequence II, and the nucleotide sequence IV is substantially reverse complementary or completely reverse complementary to the second nucleotide sequence,
- the second nucleotide sequence refers to a nucleotide sequence that is adjacent to the 5'end of the nucleotide sequence represented by SEQ ID NO: 61 in the target mRNA and has the same length as the nucleotide sequence IV .
- the length of the nucleotide sequence III and the nucleotide sequence IV are both 1 nucleotide, the base of the nucleotide sequence III is A, and the base of the nucleotide sequence IV is U ; At this time, the length ratio of the sense strand and the antisense strand is 20/20; or, the length of the nucleotide sequence III and IV are both 2 nucleotides, according to the direction from the 5'end to the 3'end, the nucleoside
- the base composition of acid sequence III is UA, and the base composition of nucleotide sequence IV is UA; at this time, the length ratio of the sense strand and the antisense strand is 21/21; or, the length of the nucleotide sequences III and IV Both are 3 nucleotides.
- the base composition of nucleotide sequence III is AUA
- the base composition of nucleotide sequence IV is UAU
- the sense strand and the reverse The length ratio of the sense strand is 22/22
- the lengths of nucleotide sequences III and IV are both 4 nucleotides
- the base composition of the nucleotide sequence III is CAUA
- the base composition of nucleotide sequence IV is UAUG
- the length ratio of the sense strand and the antisense strand is 23/23.
- the length of the nucleotide sequence III and the nucleotide sequence IV is 2 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is UA , The base composition of nucleotide sequence IV is UA; at this time, the length ratio of the sense strand and the antisense strand is 21/21.
- nucleotide sequence III and the nucleotide sequence IV are completely reverse complementary, therefore, given the base of the nucleotide sequence III, the base of the nucleotide sequence IV is also determined.
- the third siRNA is the third siRNA
- the siRNA may be a third siRNA.
- the third siRNA contains a sense strand and an antisense strand, each nucleotide in the third siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I is the same length as the nucleotide sequence shown in SEQ ID NO: 121 and has no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 122 The length is equal, and no more than 3 nucleotide differences:
- Z 9 is A
- Z 10 is U
- the nucleotide sequence I contains the nucleotide Z 11 whose position corresponds to Z 9
- the nucleotide sequence II contains the nucleoside whose position corresponds to Z 10 Acid Z 12
- the Z 12 is the first nucleotide at the 5'end of the antisense strand.
- the sense strand only includes nucleotide sequence I
- the antisense strand only includes nucleotide sequence II.
- nucleotide sequence I there is no more than 1 nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 121, and/or the nucleotide sequence II and SEQ ID NO: 122 has no more than 1 nucleotide difference between the nucleotide sequences shown.
- the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 122 includes the difference at position Z 12 , and Z 12 is selected from A, C or G. In some embodiments, the nucleotide difference is a difference at the Z 12 position, and Z 12 is selected from A, C, or G. In some embodiments, Z 11 is a nucleotide that is complementary to Z 12 . SiRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of siRNA, and these siRNAs are also within the protection scope of the present disclosure.
- nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary.
- nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 123
- nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 124:
- Z 12 is the first nucleotide at the 5'end of the antisense strand
- Z 11 is selected from A, U, G, or C
- Z 12 is a nucleotide complementary to Z 11 ; in some embodiments Among them, Z 11 is A and Z 12 is U.
- the sense strand further contains a nucleotide sequence III
- the antisense strand further contains a nucleotide sequence IV.
- the length of the nucleotide sequence III and the nucleotide sequence IV are each 1-4 cores.
- Nucleotide; the nucleotide sequence III and the nucleotide sequence IV are of equal length and are substantially reverse complementary or completely reverse complementary; the nucleotide sequence III is connected to the 5 of the nucleotide sequence I 'End, the nucleotide sequence IV is connected to the 3'end of the nucleotide sequence II, and the nucleotide sequence IV is substantially reverse complementary or completely reverse complementary to the second nucleotide sequence,
- the second nucleotide sequence refers to a nucleotide sequence that is adjacent to the 5'end of the nucleotide sequence represented by SEQ ID NO: 121 in the target mRNA and has the same length as the nucleotide sequence IV .
- the length of the nucleotide sequence III and the nucleotide sequence IV is 1 nucleotide, the base of the nucleotide sequence III is G, and the base of the nucleotide sequence IV is C ; At this time, the length ratio of the sense strand and the antisense strand is 20/20; or, the length of the nucleotide sequence III and IV are both 2 nucleotides, according to the direction from the 5'end to the 3'end, the nucleoside
- the base composition of acid sequence III is AG, and the base composition of nucleotide sequence IV is CU; at this time, the length ratio of the sense strand and the antisense strand is 21/21; or, the length of the nucleotide sequences III and IV Both are 3 nucleotides.
- the base composition of nucleotide sequence III is CAG
- the base composition of nucleotide sequence IV is CUG
- the sense strand and the reverse The length ratio of the sense strand is 22/22
- the lengths of nucleotide sequences III and IV are both 4 nucleotides
- the base composition of the nucleotide sequence III is CCAG
- the base composition of nucleotide sequence IV is CUGG
- the length ratio of the sense strand and the antisense strand is 23/23.
- the length of the nucleotide sequence III and the nucleotide sequence IV is 2 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is AG , The base composition of nucleotide sequence IV is CU; at this time, the length ratio of the sense strand and the antisense strand is 21/21.
- nucleotide sequence III and the nucleotide sequence IV are completely reverse complementary, therefore, given the base of the nucleotide sequence III, the base of the nucleotide sequence IV is also determined.
- the siRNA may be the fourth siRNA.
- the fourth siRNA contains a sense strand and an antisense strand, and each nucleotide in the fourth siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I is the same length as the nucleotide sequence shown in SEQ ID NO: 181 and has no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 182 The length is equal, and no more than 3 nucleotide differences:
- Z 13 is A
- Z 14 is U
- the nucleotide sequence I contains the nucleotide Z 15 whose position corresponds to Z 13
- the nucleotide sequence II contains the nucleoside whose position corresponds to Z 14 Acid Z 16
- the Z 16 is the first nucleotide at the 5'end of the antisense strand.
- the sense strand only includes nucleotide sequence I
- the antisense strand only includes nucleotide sequence II.
- nucleotide sequence I there is no more than one nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 181, and/or the nucleotide sequence II and SEQ ID NO: No more than 1 nucleotide difference between the nucleotide sequences shown in 182.
- the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 182 includes the difference at position Z 16 , and Z 16 is selected from A, C or G. In some embodiments, the nucleotide difference is a difference at the Z 16 position, and Z 16 is selected from A, C, or G. In some embodiments, Z 15 is a nucleotide that is complementary to Z 16 . SiRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of siRNA, and these siRNAs are also within the protection scope of the present disclosure.
- nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary.
- nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 183
- nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 184:
- Z 16 is the first nucleotide at the 5'end of the antisense strand
- Z 15 is selected from A, U, G or C
- Z 16 is a nucleotide complementary to Z 15 ; in some embodiments Among them, Z 15 is A and Z 16 is U.
- the sense strand further contains a nucleotide sequence III
- the antisense strand further contains a nucleotide sequence IV.
- the length of the nucleotide sequence III and the nucleotide sequence IV are each 1-4 cores.
- Nucleotide; the nucleotide sequence III and the nucleotide sequence IV are of equal length and are substantially reverse complementary or completely reverse complementary; the nucleotide sequence III is connected to the 5 of the nucleotide sequence I 'End, the nucleotide sequence IV is connected to the 3'end of the nucleotide sequence II, and the nucleotide sequence IV is substantially reverse complementary or completely reverse complementary to the second nucleotide sequence,
- This second nucleotide sequence refers to a nucleotide sequence that is adjacent to the 5'end of the nucleotide sequence represented by SEQ ID NO: 181 in the target mRNA and has the same length as the nucleotide sequence IV .
- the length of the nucleotide sequence III and the nucleotide sequence IV is 1 nucleotide, the base of the nucleotide sequence III is G, and the base of the nucleotide sequence IV is C ; At this time, the length ratio of the sense strand and the antisense strand is 20/20; or, the length of the nucleotide sequence III and IV are both 2 nucleotides, according to the direction from the 5'end to the 3'end, the nucleoside
- the base composition of acid sequence III is GG, and the base composition of nucleotide sequence IV is CC; at this time, the length ratio of the sense strand and the antisense strand is 21/21; or, the length of the nucleotide sequences III and IV Both are 3 nucleotides.
- the base composition of nucleotide sequence III is AGG, and the base composition of nucleotide sequence IV is CCU; at this time, the sense strand and the reverse The length ratio of the sense strand is 22/22; alternatively, the lengths of nucleotide sequences III and IV are both 4 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is CAGG, the base composition of nucleotide sequence IV is CCUG; at this time, the length ratio of the sense strand and the antisense strand is 23/23.
- the length of the nucleotide sequence III and the nucleotide sequence IV is 2 nucleotides, in the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is GG , The base composition of nucleotide sequence IV is CC; at this time, the length ratio of the sense strand and the antisense strand is 21/21.
- nucleotide sequence III and the nucleotide sequence IV are completely reverse complementary, therefore, given the base of the nucleotide sequence III, the base of the nucleotide sequence IV is also determined.
- the siRNA may be the fifth siRNA.
- the fifth siRNA contains a sense strand and an antisense strand, each nucleotide in the fifth siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I is the same length as the nucleotide sequence shown in SEQ ID NO: 241 and has no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 242 The length is equal, and no more than 3 nucleotide differences:
- Z 17 is A
- Z 18 is U
- the nucleotide sequence I contains the nucleotide Z 19 whose position corresponds to Z 17
- the nucleotide sequence II contains the nucleoside whose position corresponds to Z 18 Acid Z 20
- the Z 20 is the first nucleotide at the 5'end of the antisense strand.
- the sense strand only includes nucleotide sequence I
- the antisense strand only includes nucleotide sequence II.
- nucleotide sequence I there is no more than one nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 241, and/or the nucleotide sequence II and SEQ ID NO: 242 shows no more than one nucleotide difference between the nucleotide sequences.
- the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 242 includes the difference at position Z 20 , and Z 20 is selected from A, C or G. In some embodiments, the nucleotide difference is a difference at the Z 20 position, and Z 20 is selected from A, C, or G. In some embodiments, Z 19 is a nucleotide that is complementary to Z 20 . SiRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of siRNA, and these siRNAs are also within the protection scope of the present disclosure.
- nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary.
- nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 243
- nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 244:
- Z 20 is the first nucleotide at the 5'end of the antisense strand
- Z 19 is selected from A, U, G or C
- Z 20 is a nucleotide complementary to Z 19 ; in some embodiments Among them, Z 19 is A and Z 20 is U.
- the sense strand further contains a nucleotide sequence III
- the antisense strand further contains a nucleotide sequence IV.
- the length of the nucleotide sequence III and the nucleotide sequence IV are each 1-4 cores.
- Nucleotide; the nucleotide sequence III and the nucleotide sequence IV are of equal length and are substantially reverse complementary or completely reverse complementary; the nucleotide sequence III is connected to the 5 of the nucleotide sequence I 'End, the nucleotide sequence IV is connected to the 3'end of the nucleotide sequence II, and the nucleotide sequence IV is substantially reverse complementary or completely reverse complementary to the second nucleotide sequence,
- the second nucleotide sequence refers to a nucleotide sequence that is adjacent to the 5'end of the nucleotide sequence represented by SEQ ID NO: 241 and has the same length as the nucleotide sequence IV in the target mRNA .
- the length of the nucleotide sequence III and the nucleotide sequence IV is 1 nucleotide, the base of the nucleotide sequence III is G, and the base of the nucleotide sequence IV is C ; At this time, the length ratio of the sense strand and the antisense strand is 20/20; or, the length of the nucleotide sequence III and IV are both 2 nucleotides, according to the direction from the 5'end to the 3'end, the nucleoside
- the base composition of acid sequence III is GG, and the base composition of nucleotide sequence IV is CC; at this time, the length ratio of the sense strand and the antisense strand is 21/21; or, the length of the nucleotide sequences III and IV Both are 3 nucleotides.
- the base composition of nucleotide sequence III is AGG, and the base composition of nucleotide sequence IV is CCU; at this time, the sense strand and the reverse The length ratio of the sense strand is 22/22; alternatively, the lengths of nucleotide sequences III and IV are both 4 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is CAGG, the base composition of nucleotide sequence IV is CCUG; at this time, the length ratio of the sense strand and the antisense strand is 23/23.
- the length of the nucleotide sequence III and the nucleotide sequence IV is 2 nucleotides, in the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is GG , The base composition of nucleotide sequence IV is CC; at this time, the length ratio of the sense strand and the antisense strand is 21/21.
- nucleotide sequence III and the nucleotide sequence IV are completely reverse complementary, therefore, given the base of the nucleotide sequence III, the base of the nucleotide sequence IV is also determined.
- the siRNA may be a sixth siRNA.
- the sixth siRNA contains a sense strand and an antisense strand, each nucleotide in the sixth siRNA is independently a modified or unmodified nucleotide, wherein the sense strand contains a nucleoside Acid sequence I, the antisense strand contains a nucleotide sequence II, the nucleotide sequence I and the nucleotide sequence II are at least partially reverse complementary to form a double-stranded region, wherein the nucleotide sequence Sequence I is the same length as the nucleotide sequence shown in SEQ ID NO: 301 and has no more than 3 nucleotide differences, and the nucleotide sequence II is the same as the nucleotide sequence shown in SEQ ID NO: 302 The length is equal, and no more than 3 nucleotide differences:
- Z 21 is A
- Z 22 is U
- the nucleotide sequence I contains the nucleotide Z 23 whose position corresponds to Z 21
- the nucleotide sequence II contains the nucleoside whose position corresponds to Z 22 Acid Z 24
- the Z 24 is the first nucleotide at the 5'end of the antisense strand.
- the sense strand only includes nucleotide sequence I
- the antisense strand only includes nucleotide sequence II.
- nucleotide sequence I there is no more than one nucleotide difference between the nucleotide sequence I and the nucleotide sequence shown in SEQ ID NO: 301, and/or the nucleotide sequence II and SEQ ID NO: 302 shows no more than one nucleotide difference between the nucleotide sequences.
- the nucleotide difference between the nucleotide sequence II and the nucleotide sequence shown in SEQ ID NO: 302 includes the difference at position Z 24 , and Z 24 is selected from A, C or G. In some embodiments, the difference is a difference between the nucleotide at position 24 Z, Z 24 is selected from A, C or G. In some embodiments, Z 23 is a nucleotide complementary to Z 24 . SiRNAs with the above-mentioned nucleotide differences have higher target mRNA inhibition ability of siRNA, and these siRNAs are also within the protection scope of the present disclosure.
- nucleotide sequence I and the nucleotide sequence II are substantially reverse complementary, substantially reverse complementary or completely reverse complementary.
- nucleotide sequence I is the nucleotide sequence shown in SEQ ID NO: 303
- nucleotide sequence II is the nucleotide sequence shown in SEQ ID NO: 304:
- Z 24 is the first nucleotide at the 5'end of the antisense strand
- Z 23 is selected from A, U, G, or C
- Z 24 is a nucleotide complementary to Z 23 ; in some embodiments Among them, Z 23 is A and Z 24 is U acid.
- the sense strand further contains a nucleotide sequence III
- the antisense strand further contains a nucleotide sequence IV.
- the length of the nucleotide sequence III and the nucleotide sequence IV are each 1-4 cores.
- Nucleotide; the nucleotide sequence III and the nucleotide sequence IV are of equal length and are substantially reverse complementary or completely reverse complementary; the nucleotide sequence III is connected to the 5 of the nucleotide sequence I 'End, the nucleotide sequence IV is connected to the 3'end of the nucleotide sequence II, and the nucleotide sequence IV is substantially reverse complementary or completely reverse complementary to the second nucleotide sequence,
- This second nucleotide sequence refers to a nucleotide sequence that is adjacent to the 5'end of the nucleotide sequence represented by SEQ ID NO: 301 in the target mRNA and has the same length as the nucleotide sequence IV .
- the length of the nucleotide sequence III and the nucleotide sequence IV are both 1 nucleotide, the base of the nucleotide sequence III is A, and the base of the nucleotide sequence IV is U ; At this time, the length ratio of the sense strand and the antisense strand is 20/20; or, the length of the nucleotide sequence III and IV are both 2 nucleotides, according to the direction from the 5'end to the 3'end, the nucleoside
- the base composition of acid sequence III is UA, and the base composition of nucleotide sequence IV is UA; at this time, the length ratio of the sense strand and the antisense strand is 21/21; or, the length of the nucleotide sequences III and IV Both are 3 nucleotides.
- the base composition of nucleotide sequence III is UUA
- the base composition of nucleotide sequence IV is UAA
- the sense strand and the reverse The length ratio of the sense strand is 22/22
- the lengths of nucleotide sequences III and IV are both 4 nucleotides
- the base composition of the nucleotide sequence III is GUUA
- the base composition of nucleotide sequence IV is UAAC
- the length ratio of the sense strand and the antisense strand is 23/23.
- the length of the nucleotide sequence III and the nucleotide sequence IV is 2 nucleotides, according to the direction from the 5'end to the 3'end, the base composition of the nucleotide sequence III is UA , The base composition of nucleotide sequence IV is UA; at this time, the length ratio of the sense strand and the antisense strand is 21/21.
- nucleotide sequence III and the nucleotide sequence IV are completely reverse complementary, therefore, given the base of the nucleotide sequence III, the base of the nucleotide sequence IV is also determined.
- nucleotide sequence V nucleic acid sequence
- nucleotide modification in siRNA and modification sequence is applicable to any one of the above-mentioned first siRNA to sixth siRNA. That is, if there is no specific indication, the following description of siRNA should be regarded as describing the first siRNA, the second siRNA, the third siRNA, the fourth siRNA, the fifth siRNA and the sixth siRNA one by one. .
- the siRNA also contains a nucleotide sequence V
- the length of the sense strand and the antisense strand are different, and the antisense strand also contains a nucleotide sequence V.
- the length of the nucleotide sequence V is 1 to 3 nucleotides.
- the 3'end of the antisense strand constitutes the 3'overhang of the antisense strand.
- the length ratio of the siRNA sense strand and antisense strand provided by the present disclosure can be 19/20, 19/21, 19/22, 20/21, 20/22, 20/23, 21/22, 21/23 , 21/24, 22/23, 22/24, 22/25, 23/24, 23/25 or 23/26.
- the length of the nucleotide sequence V is 2 nucleotides. Therefore, the length ratio of the siRNA sense strand and antisense strand provided by the present disclosure may be 19/21, 21/23, or 23. /25.
- Each nucleotide in the nucleotide sequence V can be any nucleotide.
- the nucleotide sequence V is two consecutive thymine deoxyribonucleotides ( dTdT) or two consecutive uracil ribonucleotides (UU); or, in order to increase the affinity of the siRNA antisense strand with the target mRNA, the nucleotide sequence V is complementary to the nucleotide at the corresponding position of the target mRNA. Therefore, in some embodiments, the ratio of the length of the sense strand and the antisense strand of the siRNA of the present disclosure is 19/21 or 21/23. At this time, the siRNA of the present disclosure has better mRNA silencing activity.
- the nucleotide at the corresponding position of the target mRNA refers to the nucleotide or nucleotide sequence adjacent to the third nucleotide sequence of the target mRNA at the 5'end.
- Acid sequence II is substantially reverse complementary or completely reverse complementary, or the nucleotide sequence that is substantially reverse complementary or completely reverse complementary to the nucleotide sequence composed of nucleotide sequence II and nucleotide sequence IV .
- the sense strand of the siRNA contains a nucleotide sequence as shown in SEQ ID NO: 5, and the antisense strand contains a nuclear as shown in SEQ ID NO: 6 Nucleotide sequence:
- the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 7
- the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 8:
- Z 4 is the first nucleotide at the 5'end of the antisense strand
- Z 3 is selected from A, U, G or C
- Z 4 is a nucleotide complementary to Z 3 .
- the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 65
- the antisense strand contains the nucleotide sequence shown in SEQ ID NO: 66
- the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 67
- the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 68:
- Z 8 is the first nucleotide at the 5'end of the antisense strand
- Z 7 is selected from A, U, G or C
- Z 8 is a nucleotide complementary to Z 7 .
- the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 125
- the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 126.
- the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 127
- the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 128:
- Z 12 is the first nucleotide at the 5'end of the antisense strand
- Z 11 is selected from A, U, G, or C
- Z 12 is a nucleotide complementary to Z 11 .
- the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 185
- the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 186.
- the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 187
- the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 188:
- Z 16 is the first nucleotide at the 5'end of the antisense strand
- Z 15 is selected from A, U, G, or C
- Z 16 is a nucleotide complementary to Z 15 .
- the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 245, and the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 246.
- the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 247
- the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 248:
- Z 20 is the first nucleotide at the 5'end of the antisense strand
- Z 19 is selected from A, U, G or C
- Z 20 is a nucleotide complementary to Z 19 .
- the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 305
- the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 306.
- the sense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 307
- the antisense strand of the siRNA contains the nucleotide sequence shown in SEQ ID NO: 308:
- Z 24 is the first nucleotide at the 5'end of the antisense strand
- Z 23 is selected from A, U, G or C
- Z 24 is a nucleotide complementary to Z 23 .
- the siRNA described in the present disclosure is siC5a1, siC5a2, siC5b1, siC5b2, siC5c1, siC5c2, siC5d1, siC5d2, siC5e1, siC5e2, siC5f1, or siC5f2 listed in Tables 1a-1f.
- the nucleotides in the siRNA of the present disclosure are each independently a modified or unmodified nucleotide.
- the nucleotides in the siRNA of the present disclosure are unmodified nucleotides; in some embodiments, some or all of the nucleotides in the siRNA of the present disclosure are modified nucleotides.
- the siRNA of the present disclosure contains at least one modified nucleotide.
- modified nucleotides refers to nucleotides or nucleotide analogs formed by replacing the 2'hydroxyl group of the ribose group of nucleotides with other groups, or having Nucleotides of modified bases.
- the modified nucleotides will not cause the siRNA to significantly weaken or lose the function of inhibiting gene expression.
- At least one nucleotide in the sense strand or the antisense strand of the siRNA provided in the present disclosure is a modified nucleotide, and/or at least one phosphate group is a phosphate with a modified group
- at least a part of the phosphate group and/or ribose group in the phosphate-sugar backbone of at least one single chain in the sense strand and the antisense strand is a phosphate group with a modification group and/ Or a ribose group with a modified group.
- all nucleotides in the sense strand and/or the antisense strand are modified nucleotides.
- each nucleotide in the sense strand and the antisense strand of the siRNA provided in the present disclosure is independently a fluorinated modified nucleotide or a non-fluorinated modified nucleotide.
- the inventors of the present disclosure surprisingly found that the siRNA described in the present disclosure achieved a high balance of plasma stability and gene silencing efficiency in animal experiments.
- the fluoro-modified nucleotides are located in the nucleotide sequence I and the nucleotide sequence II, and, in the direction from the 5'end to the 3'end, the nucleotide sequence I At least the 7th, 8th and 9th nucleotides are fluorinated modified nucleotides; according to the direction from the 5'end to the 3'end, at least the 2, 6, 14, 16th positions in the nucleotide sequence II The nucleotides are fluoro-modified nucleotides.
- the fluoro-modified nucleotides are located in the nucleotide sequence I and the nucleotide sequence II, and there are no more than 5 fluoro-modified nucleotides in the nucleotide sequence I,
- the nucleotides at positions 7, 8, and 9 of the nucleotide sequence I are fluorinated modified nucleotides;
- the fluorine in the nucleotide sequence II There are no more than 7 modified nucleotides, and the nucleotides at positions 2, 6, 14, and 16 of the nucleotide sequence II are fluorinated modified nucleotides.
- the nucleus at positions 7, 8, 9 or 5, 7, 8, and 9 of the nucleotide sequence I Glycolic acid is a fluorinated modified nucleotide, and the nucleotides in the remaining positions in the sense strand are non-fluorinated modified nucleotides; in the direction from the 5'end to the 3'end, in the antisense strand
- the nucleotides at positions 2, 6, 14, 16 or 2, 6, 8, 9, 14, and 16 of the nucleotide sequence II are fluorinated modified nucleotides, and the antisense strand
- the nucleotides at the remaining positions are non-fluorinated modified nucleotides.
- fluoromodified nucleotides refer to nucleotides in which the hydroxyl group at the 2'position of the ribose group of the nucleotide is substituted with fluorine, and has a structure represented by the following formula (7).
- Non-fluorinated modified nucleotides refer to nucleotides or nucleotide analogs formed by replacing the hydroxyl group at the 2'position of the ribose group of the nucleotide with a non-fluorine group.
- each non-fluorinated modified nucleotide is independently selected from among nucleotides or nucleotide analogs formed by the substitution of a non-fluorinated group for the hydroxyl group at the 2'position of the ribose group of the nucleotide.
- nucleotides or nucleotide analogs formed by the substitution of a non-fluorinated group for the hydroxyl group at the 2'position of the ribose group of the nucleotide.
- nucleotides formed by replacing the hydroxyl group at the 2'position of these ribose groups with non-fluorine groups are well known to those skilled in the art, and these nucleotides can be selected from 2'-alkoxy modified nucleotides, 2'- Substituted alkoxy modified nucleotides, 2'-alkyl modified nucleotides, 2'-substituted alkyl modified nucleotides, 2'-amino modified nucleotides, 2'- One of substituted amino-modified nucleotides and 2'-deoxynucleotides.
- the 2'-alkoxy modified nucleotides are 2'-methoxy (2'-OMe) modified nucleotides, as shown in formula (8).
- the 2'-substituted alkoxy-modified nucleotides can be, for example, 2'-O-methoxyethyl (2'-MOE) modified nucleotides, such as formula (9 ) Shown.
- the 2'-amino (2'-NH 2 ) modified nucleotide is represented by formula (10).
- the 2'-deoxynucleotide (DNA) is represented by formula (11):
- Nucleotide analogs refer to nucleotides that can replace nucleotides in nucleic acids, but the structure is different from adenine ribonucleotides, guanine ribonucleotides, cytosine ribonucleotides, uracil ribonucleotides or thymine deoxynucleotides The group of ribonucleotides.
- the nucleotide analogs can be isonucleotides, bridged nucleotides, or acyclic nucleotides.
- BNA Bridged Nucleic Acid
- BNA Bridged Nucleic Acid
- BNA can contain a five-membered ring, a six-membered ring, or a seven-membered ring with a "fixed" C3'-endosugar condensed bridge structure. The bridge is usually incorporated into the 2'-, 4'-position of the ribose to provide a 2',4'-BNA nucleotide.
- the BNA can be LNA, ENA, cET BNA, etc., where LNA is shown in formula (12), ENA is shown in formula (13), and cET BNA is shown in formula (14):
- Acyclic nucleotides are a type of nucleotides formed by opening the sugar ring of nucleotides.
- acyclic nucleotides can be unlocked nucleic acids (UNA) or glycerol nucleic acids (GNA), wherein UNA is represented by formula (15) and GNA is represented by formula (16):
- R is selected from H, OH or alkoxy (O-alkyl).
- Isonucleotide refers to a compound formed by changing the position of the base in the nucleotide on the ribose ring.
- the heteronucleotide may be a compound formed by moving a base from the 1'-position of the ribose ring to the 2'-position or 3'-position, as shown in formula (17) or (18):
- Base represents a base, such as A, U, G, C or T; R is selected from H, OH, F or the non-fluorine group as described above.
- the nucleotide analog is selected from one of heteronucleotides, LNA, ENA, cET, UNA, and GNA.
- each non-fluorinated modified nucleotide is a methoxy-modified nucleotide.
- the methoxy-modified nucleotide refers to the 2'of the ribose group. -Nucleotides formed by the substitution of hydroxy groups with methoxy groups.
- the siRNA of the present disclosure is an siRNA with the following modifications: in the direction from the 5'end to the 3'end, in the sense strand, positions 7, 8, and 9 of the nucleotide sequence I Or the nucleotides at positions 5, 7, 8, and 9 are fluoro-modified nucleotides, and the nucleotides at the remaining positions in the sense strand are methoxy-modified nucleotides; in the antisense strand Wherein, the nucleotides at positions 2, 6, 14, 16 or 2, 6, 8, 9, 14, and 16 of the nucleotide sequence II are fluoro-modified nucleotides, and the antisense The nucleotides at the remaining positions in the chain are methoxy modified nucleotides.
- the siRNA of the present disclosure is an siRNA with the following modifications: in the direction from the 5'end to the 3'end, the siRNA is at positions 5, 7, 8 and 9 of nucleotide sequence I in the sense strand
- the nucleotides are fluoro-modified nucleotides
- the nucleotides in the remaining positions of the sense strand of the siRNA are methoxy-modified nucleotides
- the siRNA in the direction from the 5'end to the 3'end
- the nucleotides at positions 2, 6, 8, 9, 14 and 16 of nucleotide sequence II in the antisense strand are fluorinated modified nucleotides
- the nucleotides at the remaining positions of the antisense strand of siRNA are methoxy groups Modified nucleotides;
- the 5th, 7th, 8th and 9th nucleotides of the nucleotide sequence I in the sense strand of the siRNA are fluorinated modified nucleotides, and the sense
- the nucleotides at the remaining positions of the chain are methoxy-modified nucleotides, and in the direction from the 5'end to the 3'end, the second, sixth, and 14th nucleotide sequence II in the antisense strand of the siRNA
- the nucleotides at and 16 are fluoro-modified nucleotides, and the nucleotides at the remaining positions of the antisense strand of siRNA are methoxy-modified nucleotides;
- the nucleotides at positions 7, 8 and 9 of nucleotide sequence I in the sense strand of the siRNA are fluorinated modified nucleotides, and the sense strand of the siRNA
- the nucleotides at the remaining positions are methoxy-modified nucleotides, and in the direction from the 5'end to the 3'end, the second, sixth, 14th, and 16th nucleotide sequence II in the antisense strand of the siRNA
- the nucleotides at the position are fluoro-modified nucleotides, and the nucleotides at the remaining positions of the antisense strand of the siRNA are methoxy-modified nucleotides.
- the siRNA provided in the present disclosure is siC5a1-M1, siC5a1-M2, siC5a1-M3, siC5a2-M1, siC5a2-M2, siC5a2-M3, siC5b1-M1, siC5b1- M2, siC5b1-M3, siC5b2-M1, siC5b2-M2, siC5b2-M3, siC5c1-M1, siC5c1-M2, siC5c1-M3, siC5c2-M1, siC5c2-M2, siC5c2-M3, siC5d1-M1, siC5d1-M2 siC5d1-M3, siC5d2-M1, siC5d2-M2, siC5d2-M3, siC5e1-M1, siC5e1-M2, siC5e1-M3, siC5e2-M1, siC5e2-M2, siC5e2-M3, siC5f1-M1, siC5f1-M2,
- the modified siRNA is not only low in cost, but also makes the ribonuclease in the blood difficult to cut the nucleic acid, thereby increasing the stability of the nucleic acid and making the nucleic acid more resistant to nuclease hydrolysis.
- the phosphate groups in the phosphate-sugar backbone of at least one single strand in the sense strand and the antisense strand of the siRNA provided in the present disclosure is a phosphate group with a modification group.
- the phosphate ester group with a modification group is a phosphorothioate group formed by replacing at least one oxygen atom in the phosphodiester bond in the phosphate ester group with a sulfur atom; in some embodiments, the The phosphate group with a modified group is a phosphorothioate group with a structure shown in formula (1):
- This modification can stabilize the double-stranded structure of the siRNA and maintain the high specificity and affinity of base pairing.
- the phosphorothioate group linkage exists in at least one of the following positions: the first and second cores of either end of the sense strand or the antisense strand Between nucleotides; between the second and third nucleotides at either end of the sense strand or the antisense strand; or any combination of the above.
- the phosphorothioate group linkages are present at all the above positions except the 5'end of the sense chain.
- the phosphorothioate group linkages are present at all the above positions except the 3'end of the sense chain.
- the phosphorothioate group linkage is present in at least one of the following positions:
- the siRNA provided in the present disclosure is siC5a1-M1S, siC5a1-M2S, siC5a1-M3S, siC5a2-M1S, siC5a2-M2S, siC5a2-M3S, siC5b1-M1S, siC5b1- listed in Table 1a-1f.
- the 5'terminal nucleotide of the siRNA antisense strand is a 5'-phosphate nucleotide or a 5'-phosphate analog modified nucleotide.
- 5'-phosphate nucleotides or 5'-phosphate analog modified nucleotides are well known to those skilled in the art, for example, 5'-phosphate nucleotides may have the following structure:
- R is selected from H, OH, methoxy, fluorine;
- Base represents a base, selected from A, U, C, G or T.
- the 5'-phosphate nucleotide is a nucleotide containing a 5'-phosphate modification represented by formula (2)
- the 5'-phosphate analog modified nucleotide is a nucleotide containing a vinyl phosphate ( 5'-(E)-vinylphosphonate, E-VP) modified nucleotides, as shown in formula (3), or phosphorothioate modified nucleotides, as shown in formula (5).
- the siRNA provided in the present disclosure is siC5a1-M1P1, siC5a1-M2P1, siC5a1-M3P1, siC5a2-M1P1, siC5a2-M2P1, siC5a2-M3P1, siC5b1-M1P1, siC5b1- M2P1, siC5b1-M3P1, siC5b2-M1P1, siC5b2-M2P1, siC5b2-M3P1, siC5c1-M1P1, siC5c1-M2P1, siC5c1-M3P1, siC5c2-M1P1, siC5c2-M1P1, siC5c2-M2P1, siC5c2-M3P1, siC5d1-M1P1, siC5d2-M2P1, siC5d2-M1P1, siC5d2-M2P1, siC5d2-M3P1, siC5e1-M1P1, siC5e1-M2P
- the inventors of the present disclosure unexpectedly discovered that the siRNA provided by the present disclosure not only has significantly enhanced plasma and lysosome stability, but also has higher target mRNA inhibitory activity.
- the siRNA provided in the present disclosure can be obtained by conventional siRNA preparation methods in the art (for example, solid-phase synthesis and liquid-phase synthesis). Among them, solid phase synthesis already has commercial customized services.
- the modified nucleotide groups can be introduced into the siRNA described in the present disclosure by using nucleoside monomers with corresponding modifications, the method for preparing nucleoside monomers with corresponding modifications and the introduction of modified nucleotide groups The siRNA method is also well known to those skilled in the art.
- the present disclosure provides a pharmaceutical composition containing the siRNA as described above as an active ingredient and a pharmaceutically acceptable carrier.
- the pharmaceutically acceptable carrier may be a carrier conventionally used in the field of siRNA administration, such as but not limited to magnetic nanoparticles (magnetic nanoparticles, such as nanoparticles based on Fe 3 O 4 or Fe 2 O 3 ), carbon nanotubes ( carbon nanotubes), mesoporous silicon, calcium phosphate nanoparticles (calcium phosphate nanoparticles), polyethylenimine (PEI), polyamidoamine (PAMAM) dendrimer, polylysine Acid (poly(L-lysine), PLL), chitosan (chitosan), 1,2-dioleoyl-3-trimethylammonium-propane (1,2-dioleoyl-3-trimethylammonium-propane, DOTAP), poly D Type or L type lactic acid/glycolic acid copolymer (poly(D&L-lactic/glycolic acid) copolymer, PLGA), poly(2-aminoethyl ethylene
- the content of siRNA and pharmaceutically acceptable carrier there is no special requirement for the content of siRNA and pharmaceutically acceptable carrier, and may be the conventional content of each component.
- the weight ratio of siRNA to the pharmaceutically acceptable carrier may be 1:(1-500), and in some embodiments, the weight ratio may be 1:(1-50).
- the pharmaceutical composition may also contain other pharmaceutically acceptable auxiliary materials, which may be one or more of various formulations or compounds conventionally used in the art.
- the other pharmaceutically acceptable auxiliary materials may include at least one of a pH buffer, a protective agent, and an osmotic pressure regulator.
- the pH buffer can be a tris hydrochloride buffer with a pH of 7.5-8.5 and/or a phosphate buffer with a pH of 5.5-8.5, for example, it can be a phosphate with a pH of 5.5-8.5 Buffer.
- the protective agent may be at least one of inositol, sorbitol, sucrose, trehalose, mannose, maltose, lactose, and glucose. Based on the total weight of the pharmaceutical composition, the content of the protective agent may be 0.01-30% by weight.
- the osmotic pressure regulator may be sodium chloride and/or potassium chloride.
- the content of the osmotic pressure regulator is such that the osmotic pressure of the pharmaceutical composition is 200-700 millosmole per kilogram (mOsm/kg). According to the required osmotic pressure, those skilled in the art can easily determine the content of the osmotic pressure regulator.
- the pharmaceutical composition may be a liquid preparation, such as an injection, or a lyophilized powder injection, which is mixed with liquid excipients during administration to prepare a liquid preparation.
- the liquid formulation can be, but not limited to, administered by subcutaneous, intramuscular or intravenous injection, and can also be, but not limited to, administered to the lungs by spraying, or administered to other organs and tissues (such as liver) by spraying through the lungs.
- the pharmaceutical composition is for intravenous administration.
- the pharmaceutical composition may be in the form of a liposome formulation.
- the pharmaceutically acceptable carrier used in the liposome formulation contains an amine-containing transfection compound (hereinafter may also be referred to as an organic amine), auxiliary lipids and/or PEGylation Lipid.
- the organic amine, auxiliary lipid and pegylated lipid can be selected from the amine-containing transfection compound described in CN103380113A (incorporated herein in its entirety by reference) or pharmaceutically acceptable One or more of salts or derivatives of, auxiliary lipids and pegylated lipids.
- the organic amine may be a compound represented by formula (201) described in CN103380113A or a pharmaceutically acceptable salt thereof:
- X 101 or X 102 are each independently O, S, NA or CA, wherein A is hydrogen or a C1-C20 hydrocarbon chain;
- R 101 , R 102 , R 103 , R 104 , R 105 , R 106 or R 107 are each independently hydrogen, cyclic or acyclic, substituted or unsubstituted, branched or straight chain aliphatic Groups, cyclic or acyclic, substituted or unsubstituted, branched or straight chain heteroaliphatic groups, substituted or unsubstituted, branched or straight chain acyl groups, substituted or unsubstituted Substituted, branched or straight chain aryl, substituted or unsubstituted, branched or straight chain heteroaryl;
- x is an integer of 1-10;
- R 103 and the nitrogen in formula (201) form a structure as shown in formula (202) or formula (203):
- g, e, or f are each independently an integer from 1 to 6
- HCC represents a hydrocarbon chain
- each *N represents a nitrogen atom in formula (201).
- R 103 is a polyamine. In other embodiments, R 103 is a ketal. In some embodiments, each of R 101 and R 102 in formula (201) is independently any substituted or unsubstituted, branched or straight chain alkyl or alkenyl group.
- the radical or alkenyl group has 3 to about 20 carbon atoms, such as 8 to about 18 carbon atoms, and 0 to 4 double bonds, such as 0 to 2 double bonds.
- R 103 can be any of the following formulas (204)-(213):
- each "HCC” represents a hydrocarbon chain
- each * shows R 103 and the formula (201)
- the possible connection points of the nitrogen atom in where each H at any * position can be replaced to achieve the connection with the nitrogen atom in formula (201).
- the compound represented by formula (201) can be prepared according to the description in CN103380113A.
- the organic amine is an organic amine represented by formula (214) and/or an organic amine represented by formula (215):
- the auxiliary lipid is cholesterol, cholesterol analogues and/or cholesterol derivatives
- the pegylated lipid is 1,2-dipalmitamide-sn-glycerol-3-phosphatidylethanolamine-N-[methoxy(polyethylene glycol)]-2000.
- the molar ratio between the organic amine, the auxiliary lipid and the pegylated lipid is (19.7-80): (19.7-80 ): (0.3-50), for example (50-70): (20-40): (3-20).
- the particles of the pharmaceutical composition formed by the siRNA of the present disclosure and the above-mentioned amine-containing transfection reagent have an average diameter of about 30 nm to about 200 nm, usually about 40 nm to about 135 nm, and more generally, the liposome
- the average diameter of the particles is about 50 nm to about 120 nm, about 50 nm to about 100 nm, about 60 nm to about 90 nm, or about 70 nm to about 90 nm, for example, the average diameter of the liposome particles is about 30, 40, 50, 60, 70 , 75, 80, 85, 90, 100, 110, 120, 130, 140, 150 or 160nm.
- the weight of the siRNA and all lipids is from about 1:1 to about 1:50, from about 1:1 to about 1:30, from about 1:3 to about 1:20, from about 1:4 to about 1: 18.
- the weight ratio of the siRNA of the present disclosure to all lipids is about 1:5, 1:6, 1:7, 1:8, 1:9, 1:10, 1 :11, 1:12, 1:13, 1:14, 1:15, 1:16, 1:17, or 1:18.
- each component of the pharmaceutical composition may exist independently when sold, and may exist in the form of a liquid formulation when used.
- the pharmaceutical composition formed by the siRNA provided in the present disclosure and the above-mentioned pharmaceutically acceptable carrier can be prepared according to various known methods, except that the siRNA provided in the present disclosure can replace the existing siRNA; in some In the embodiment, it can be prepared as follows:
- the organic amine, auxiliary lipid and PEGylated lipid are suspended in alcohol according to the above molar ratio and mixed to obtain a lipid solution; the amount of alcohol is such that the total mass concentration of the resulting lipid solution is 2-25 mg/mL, For example, it can be 8-18 mg/mL.
- the alcohol is selected from pharmaceutically acceptable alcohols, such as alcohols that are liquid near room temperature, for example, ethanol, propylene glycol, benzyl alcohol, glycerin, polyethylene glycol 200, polyethylene glycol 300, and polyethylene glycol 400 One or more of, for example, ethanol.
- the siRNA provided in the present disclosure is dissolved in a buffered salt solution to obtain an aqueous siRNA solution.
- concentration of the buffer salt solution is 0.05-0.5M, such as 0.1-0.2M, adjust the pH of the buffer salt solution to 4.0-5.5, such as 5.0-5.2, and the amount of the buffer salt solution is such that the concentration of siRNA does not exceed 0.6 mg /mL, for example, 0.2-0.4 mg/mL.
- the buffer salt is selected from one or more of soluble acetate and soluble citrate, for example, sodium acetate and/or potassium acetate.
- the lipid solution and the siRNA aqueous solution are mixed, and the mixed product is incubated at 40-60° C. for at least 2 minutes, for example, 5-30 minutes, to obtain an incubated liposome preparation.
- the volume ratio of lipid solution and siRNA aqueous solution is 1: (2-5).
- the incubated liposome preparation is concentrated or diluted to remove impurities and sterilize to obtain the pharmaceutical composition provided by the present disclosure.
- Its physical and chemical parameters are pH 6.5-8, encapsulation rate not less than 80%, and particle size 40-200nm, polydispersity index is not higher than 0.30, osmotic pressure is 250-400mOsm/kg; for example, the physical and chemical parameters can be pH 7.2-7.6, encapsulation rate is not less than 90%, particle size is 60-100nm, more The dispersion index is not higher than 0.20, and the osmotic pressure is 300-400mOsm/kg.
- concentration or dilution can be performed before, after or at the same time as removing impurities.
- Various existing methods can be used to remove impurities, such as a tangential flow system, a hollow fiber column, ultrafiltration under 100K Da conditions, and the ultrafiltration exchange solution is phosphate buffered saline (PBS) with pH 7.4.
- PBS phosphate buffered saline
- the method of sterilization can adopt various existing methods, for example, it can be filtered and sterilized on a 0.22 ⁇ m filter.
- the present disclosure provides an siRNA conjugate containing the above-mentioned siRNA and a conjugating group conjugated to the siRNA.
- the conjugating group includes at least one pharmaceutically acceptable targeting group and an optional linker, and the siRNA, the linker and the targeting group are connected in sequence.
- the targeting groups are 1-6.
- the siRNA molecule can be non-covalently or covalently conjugated to the conjugating group, for example can be covalently conjugated to the conjugating group.
- the conjugation site of the siRNA and the conjugating group can be at the 3'end or 5'end of the siRNA sense strand, or at the 5'end of the antisense strand, or in the internal sequence of the siRNA. In some embodiments, the conjugation site of the siRNA and the conjugating group is at the 3'end of the sense strand of the siRNA.
- the conjugating group may be attached to the phosphate group, the 2'-position hydroxyl group or the base of the nucleotide. In some embodiments, the conjugating group can also be connected to the 3'-position hydroxyl group, in which case the nucleotides are connected by 2'-5' phosphodiester bond.
- the conjugating group is usually attached to the phosphate group of the nucleotide; when the conjugating group is attached to the internal sequence of the siRNA, the conjugating group is Usually attached to the ribose ring or base.
- connection methods can refer to the literature: Muthiah Manoharan et al. siRNA conjugates carrying, sequentially assembled, trivalent N-acetylgalactosamine linked through nucleosides elicit robust gene silence in vivo in hepatocytes. ACS Chemical biology, 2015, 10(5).
- the siRNA and the conjugating group may be connected by acid-labile or reducible chemical bonds. Under the acidic environment of cell endosomes, these chemical bonds can be degraded, so that the siRNA becomes a free state.
- the conjugating group can be attached to the sense strand of the siRNA to minimize the effect of conjugation on the activity of the siRNA.
- the pharmaceutically acceptable targeting group may be a ligand commonly used in the field of siRNA administration, such as various ligands described in WO2009082607A2, the entire disclosure of which is incorporated by reference This article.
- the pharmaceutically acceptable targeting group may be selected from one or more of the following targeting molecules or ligands formed by their derivatives: lipophilic molecules, such as cholesterol, bile acids, Vitamins (such as vitamin E), lipid molecules of different chain lengths; polymers, such as polyethylene glycol; polypeptides, such as membrane-permeable peptides; aptamers; antibodies; quantum dots; carbohydrates, such as lactose, polylactose, and mannose Sugar, galactose, N-acetylgalactosamine (GalNAc); folic acid (folate); receptor ligands expressed by hepatic parenchymal cells, such as asialoglycoprotein, asialosugar residues, lipoproteins (such as high density Lipoprotein, low-density lipoprotein, etc.), glucagon, neurotransmitter (such as adrenaline), growth factor, transferrin, etc.
- lipophilic molecules such as cholesterol, bile acids, Vitamins (such as vitamin E
- each of the ligands is independently selected from a ligand capable of binding to cell surface receptors.
- at least one ligand is a ligand capable of binding to receptors on the surface of liver cells.
- at least one ligand is a ligand capable of binding to a mammalian cell surface receptor.
- at least one ligand is a ligand capable of binding to human liver cell surface receptors.
- at least one ligand is a ligand capable of binding to the liver surface asialoglycoprotein receptor (ASGPR).
- the types of these ligands are well-known to those skilled in the art, and their role is generally to bind to specific receptors on the surface of target cells and mediate the delivery of siRNA linked to the ligand to target cells.
- the pharmaceutically acceptable targeting group may be any ligand that binds to the asialoglycoprotein receptor (ASGPR) on the surface of mammalian liver cells.
- each ligand is independently an asialoglycoprotein, such as asialoorosomucoid (ASOR) or asialofetuin (ASF).
- the ligand is a sugar or a sugar derivative.
- At least one ligand is a sugar. In some embodiments, each ligand is a sugar. In some embodiments, at least one ligand is a monosaccharide, polysaccharide, modified monosaccharide, modified polysaccharide, or sugar derivative. In some embodiments, at least one of the ligands may be a monosaccharide, disaccharide, or trisaccharide. In some embodiments, at least one ligand is a modified sugar. In some embodiments, each ligand is a modified sugar.
- each ligand is independently selected from polysaccharides, modified polysaccharides, monosaccharides, modified monosaccharides, polysaccharide derivatives, or monosaccharide derivatives.
- each or at least one ligand is selected from the group consisting of glucose and its derivatives, mannan and its derivatives, galactose and its derivatives, xylose and its derivatives, Ribose and its derivatives, fucose and its derivatives, lactose and its derivatives, maltose and its derivatives, arabinose and its derivatives, fructose and its derivatives, and sialic acid.
- each of the ligands can be independently selected from D-mannanose, L-mannanose, D-arabinose, D-xylofuranose, L-xylofuranose, D- Glucose, L-glucose, D-galactose, L-galactose, ⁇ -D-mannanose, ⁇ -D-mannanose, ⁇ -D-mannanose, ⁇ -D-mannanose, ⁇ -D-glucopyranose, ⁇ -D-glucopyranose, ⁇ -D-glucopyranose, ⁇ -D-glucopyranose, ⁇ -D-frutofuranose, ⁇ -D-fructose pyranose, ⁇ -D-pyranose Galactopyrose, ⁇ -D-galactopyranose, ⁇ -D-galactofuranose, ⁇ -D-galactofuranose, glucosamine, sialic acid, galactosamine,
- the pharmaceutically acceptable targeting group in the siRNA conjugate may be galactose or N-acetylgalactosamine, wherein the galactose or N-acetylgalactosamine molecule may be monovalent , Second price, three price, four price. It should be understood that the monovalent, bivalent, trivalent, and tetravalent mentioned herein refer to the siRNA molecule and the conjugation group containing galactose or N-acetylgalactosamine as the targeting group to form siRNA conjugates.
- the molar ratio of the siRNA molecule to the galactose or N-acetylgalactosamine molecule in the siRNA conjugate is 1:1, 1:2, 1:3 or 1:4.
- the pharmaceutically acceptable targeting group is N-acetylgalactosamine.
- the siRNA described in the present disclosure is conjugated with a N-acetylgalactosamine-containing conjugating group, the N-acetylgalactosamine molecule is trivalent or tetravalent.
- the siRNA described in the present disclosure is conjugated with a N-acetylgalactosamine-containing conjugating group, the N-acetylgalactosamine molecule is trivalent.
- the targeting group can be connected to the siRNA molecule via a suitable linker, and those skilled in the art can select a suitable linker according to the specific type of the targeting group.
- linkers, targeting groups, and connection methods with siRNA please refer to the disclosure of WO2015006740A2, and the entire content is incorporated herein by reference.
- a suitable linker may have a structure as shown in formula (301):
- k is an integer of 1-3;
- L A having the formula (302) contains an amide bond-like portion of the structure shown, each of the L A at its two ends respectively of said group and the targeting moieties via ether linkages L C phase connection:
- L B having the formula (303) comprises a pyrrolidine N- acyl chain portion shown structure, the linear portion having a carbonyl group at one end thereof and connected with the L C moiety through an amide bond, at the other end It has an oxygen group and is connected to the siRNA through a phosphate bond:
- L C based aminomethane two monovalent 2-4 aminomethane or tris (hydroxymethyl) aminomethane linking group, via an oxygen atom of the L C L A portion of each of the phases by ether linkages connection, and connected by an amide bond via a nitrogen atom and L B of the portion.
- the double helix structure represents siRNA.
- the conjugation site of the siRNA and the conjugating group can be at the 3'end or 5'end of the siRNA sense strand, or at the 5'end of the antisense strand, or in the internal sequence of the siRNA.
- the double helix structure represents the siRNA, and the linker is connected to the 3'end of the sense strand of the siRNA.
- a suitable linker may have a structure as shown in formula (306):
- l is an integer from 0-3;
- # Indicates the site on the linker that is connected to the siRNA via a phosphate bond.
- the siRNA conjugate has a structure as shown in formula (307):
- the double helix structure represents the siRNA, and the linker is connected to the 3'end of the sense strand of the siRNA.
- siRNA conjugate can be synthesized by a method that has been described in detail in the prior art.
- WO2015006740A2 describes in detail the preparation methods of various siRNA conjugates.
- the siRNA conjugate of the present disclosure is obtained by a method well known to those skilled in the art.
- WO2014025805A1 describes the preparation method of the structure represented by formula (305), Rajeev et al. described the preparation method of the structure represented by formula (307) in ChemBioChem 2015, 16, 903-908.
- the siRNA conjugate has a structure as shown in formula (308):
- n1 is an integer selected from 1-3, n3 is an integer selected from 0-4;
- Each m1, m2 or m3 is independently an integer selected from 2-10;
- R 10 , R 11 , R 12 , R 13 , R 14 or R 15 are each independently H, or selected from the group consisting of C 1 -C 10 alkyl, C 1 -C 10 haloalkyl and C 1 -C 10 alkoxy;
- R 3 is a group represented by the formula A59:
- E 1 is OH, SH or BH 2
- Nu is the siRNA of the disclosure
- L 1 can be selected from the group consisting of (A1)-(A26) groups or any combination thereof, wherein the structure and definition of (A1)-(A26) are as follows:
- Each R' is independently C 1 -C 10 alkyl
- Each Ra is selected from the group consisting of the groups represented by formulas (A27)-(A45) or any combination thereof:
- Each Rb is independently C 1 -C 10 alkyl; Represents the point at which the group is covalently attached.
- L 1 is defined as a linear alkylene group for convenience, it may not be a linear group or have a different name, such as an amine or alkenyl group due to the above substitutions and/or substitutions.
- the length of L 1 is the number of atoms in the chain connecting the two connection points.
- a ring (such as a heterocyclylene or heteroarylene group) obtained by replacing the carbon atom of the linear alkylene group is counted as one atom.
- each M 1 represents a targeting group, and its definition and selectable range are the same as the above-mentioned targeting group.
- each M 1 is independently selected from one of the ligands having affinity for the asialoglycoprotein receptor on the surface of mammalian liver cells.
- n1 may be an integer of 1-3
- n3 may be an integer of 0-4
- M 1 targeting groups in the siRNA conjugate is at least 2.
- n1+n3 ⁇ 2 so that the number of M 1 targeting groups can be at least 3. This makes it easier for the M 1 targeting group to bind to the asialoglycoprotein receptor on the liver surface, thereby promoting the siRNA conjugate to enter the cell through endocytosis.
- n1 is an integer of 1-2
- n3 is an integer of 0-1
- n1+n3 2-3.
- m1, m2, or m3 are each independently an integer selected from 2 to 10
- M 1 may be a plurality of spaces between the targeting group M 1 position for liver targeting group to the surface of saliva
- R 10 , R 11 , R 12 , R 13 , R 14 or R 15 are each independently selected from H, C 1 -C 10 alkyl, C 1 -C 10 haloalkyl, and C One of the 1- C 10 alkoxy groups will not change the properties of the siRNA conjugate of the present disclosure, and can achieve the purpose of the present disclosure.
- R 10 , R 11 , R 12 , R 13 , R 14 or R 15 are each independently selected from H, methyl, or ethyl.
- R 10 , R 11 , R 12 , R 13 , R 14 and R 15 are all H.
- R 3 is a group represented by the formula A59, wherein E 1 is OH, SH or BH 2. Based on the consideration of the availability of raw materials for preparation, in some embodiments, E 1 is OH or SH.
- R 2 The choice of R 2 is to realize the connection with the N atom on the nitrogen-containing skeleton and A59.
- nitrogen-containing skeleton refers to a chain structure in which carbon atoms to which R 10 , R 11 , R 12 , R 13 , R 14 and R 15 are connected and N atoms are connected to each other. Therefore, R 2 may be any linking group capable of linking the A59 group to the N atom on the nitrogen-containing skeleton in an appropriate manner.
- the R 2 group in the case of preparing the siRNA conjugate represented by formula (308) by a solid-phase synthesis process, needs to also contain a connection site connected to the N atom on the nitrogen-containing backbone And the connection site to the P atom in R 3 .
- the site connected to the N atom on the nitrogen-containing skeleton in R 2 forms an amide bond with the N atom
- the site connected to the P atom on R 3 forms a phosphate bond with the P atom
- R 2 can be B5, B6, B5' or B6':
- the value range of q 2 can be an integer of 1-10. In some embodiments, q 2 is an integer of 1-5.
- L 1 The role of L 1 is to connect the M 1 targeting group to the N on the nitrogen-containing backbone to provide the liver targeting function for the siRNA conjugate represented by formula (308).
- L 1 is selected from one or more linked combinations of groups of formula A1-A26.
- L 1 is selected from a connection combination of one or more of A1, A4, A5, A6, A8, A10, A11, and A13.
- L 1 is selected from a connection combination of at least two of A1, A4, A8, A10, and A11.
- L 1 is selected from a connection combination of at least two of A1, A8, and A10.
- the length of L 1 can be 3-25 atoms, 3-20 atoms, 4-15 atoms, or 5-12 atoms. In some embodiments, the length of L 1 is 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 30, 35, 40, 45, 50, 55, 60 atom.
- j1 is an integer of 2-10, and in some embodiments, j1 is an integer of 3-5. In some embodiments, j2 is an integer from 2-10, and in some embodiments, j2 is an integer from 3-5.
- R' is a C 1 -C 4 alkyl group, and in some embodiments, R'is one of methyl, ethyl, and isopropyl.
- Ra is one of A27, A28, A29, A30, and A31. In some embodiments, Ra is A27 or A28.
- Rb is a C 1 -C 5 alkyl group. In some embodiments, Rb is one of methyl, ethyl, isopropyl and butyl.
- each of j1, j2, R', Ra, Rb is selected in formula A1-A26, so that the M 1 targeting group is connected to the N atom on the nitrogen-containing backbone, and the M 1 target
- the spatial position between the directional groups is more suitable for the M 1 targeting group to bind to the asialoglycoprotein receptor on the liver surface.
- the siRNA conjugate has the formula (403), (404), (405), (406), (407), (408), (409), (410), (411), ( The structure shown in 412), (413), (414), (415), (416), (417), (418), (419), (420), (421) or (422):
- the P atom in formula A59 can be attached to any possible position in the siRNA sequence.
- the P atom in formula A59 can be attached to any nucleotide in the sense strand or antisense strand of the siRNA;
- the P atom in formula A59 is connected to any nucleotide in the sense strand of the siRNA.
- the P atom in formula A59 is connected to the end of the siRNA sense strand or antisense strand; in some embodiments, the P atom in formula A59 is connected to the end of the siRNA sense strand. The end refers to the first 4 nucleotides from one end of the sense strand or the antisense strand.
- the P atom in formula A59 is connected to the end of the siRNA sense strand or antisense strand; in some embodiments, the P atom in formula A59 is connected to the 3'end of the siRNA sense strand.
- the siRNA conjugate represented by formula (308) enters the cell, when unwinding, a separate siRNA antisense strand can be released to block C5 mRNA translation protein The process of inhibiting the expression of complement protein C5 gene.
- P in formula A59 can be attached to any possible position on the nucleotide in the siRNA, for example, the 5'position of the nucleotide, the 2'position of the nucleotide, the 3'of the nucleotide Position or nucleotide base.
- the P atom in formula A59 can be connected to the 2', 3'or 5'position of the nucleotide in the siRNA by forming a phosphodiester bond.
- the P atom in formula A59 is connected to the oxygen atom formed after the 3'hydroxyl group of the 3'terminal nucleotide of the siRNA sense strand is dehydrogenated (at this time, the P atom in A59 can also be regarded as siRNA
- the P atom in the phosphate group contained in A59), or the P atom in formula A59 is connected to the nucleotide by substituting the hydrogen in the 2'-hydroxyl group of one nucleotide in the sense strand of siRNA, or the P in formula A59
- the atom is connected to the nucleotide by replacing the hydrogen in the 5'hydroxyl of the 5'terminal nucleotide of the siRNA sense strand.
- the inventors of the present disclosure unexpectedly discovered that the siRNA conjugate of the present disclosure has significantly improved plasma stability and low off-target effects, while also exhibiting higher C5 mRNA silencing activity.
- the siRNA of the present disclosure may be one of the siRNAs shown in Tables 1a-1f. The siRNA conjugates containing these siRNAs showed higher C5 mRNA silencing activity.
- each adjacent nucleotide is connected by a phosphodiester bond or a phosphorothioate bond, and the phosphodiester bond or phosphorothioate bond is not bridged
- the oxygen atom or sulfur atom has a negative charge, it can exist in the form of a hydroxyl group or a mercapto group, and the hydrogen ion in the hydroxyl group or mercapto group can also be partially or completely replaced by a cation.
- the cation may be any cation, such as one of metal cation, ammonium ion NH 4 + , and organic ammonium cation.
- the cation is selected from one or more of alkali metal ions, ammonium cations formed by tertiary amines, and quaternary ammonium cations.
- the alkali metal ion may be K + and/or Na +
- the cation formed by the tertiary amine may be an ammonium ion formed by triethylamine and/or an ammonium ion formed by N,N-diisopropylethylamine. Therefore, the siRNA or siRNA conjugate described in the present disclosure may exist at least partially in the form of a salt.
- the non-bridging oxygen atom or sulfur atom in the phosphodiester bond or phosphorothioate bond is at least partially combined with sodium ions, and the siRNA or siRNA conjugate described in the present disclosure is sodium salt or partial sodium salt.
- modified nucleotide groups can be introduced into the siRNA described in the present disclosure by using nucleoside monomers with corresponding modifications.
- the method of preparing nucleoside monomers with corresponding modifications and the method of introducing modified nucleotide groups into siRNA are also well known to those skilled in the art. All modified nucleoside monomers are commercially available or prepared by known methods.
- the siRNA conjugate represented by formula (308) can be prepared by the following method, which includes under the conditions of phosphoramidite solid-phase synthesis, according to the nucleotides of the sense strand and antisense strand of the siRNA, respectively. Type and order, according to the direction of 3'to 5', connect the nucleoside monomers in turn.
- the connection of each nucleoside monomer includes four steps of deprotection, coupling, capping, oxidation or vulcanization; isolate the sense strand of siRNA And the antisense strand, annealing, wherein the siRNA is the above-mentioned siRNA of the present disclosure;
- the method also includes contacting the compound represented by formula (321) with a nucleoside monomer or a nucleotide sequence linked to a solid support in the presence of coupling reaction conditions and a coupling reagent, so that the formula (321) The compound shown in) is linked to the nucleotide sequence through a coupling reaction.
- the compound represented by formula (321) is also referred to as a conjugate molecule.
- R 4 is a group capable of binding to the siRNA represented by Nu in the compound represented by formula (308). In some embodiments, R 4 is a group capable of covalently bonding to the siRNA represented by Nu. In some embodiments, R 4 is a group capable of being conjugated to any functional group of siRNA represented by Nu through a phosphodiester bond through a reaction;
- Each S 1 is independently a group formed by replacing all active hydroxyl groups in M 1 with YCOO- groups, wherein each Y is independently selected from methyl, trifluoromethyl, difluoromethyl, and monofluoromethyl
- Y is independently selected from methyl, trifluoromethyl, difluoromethyl, and monofluoromethyl
- phenyl group trichloromethyl, dichloromethyl, monochloromethyl, ethyl, n-propyl, isopropyl, phenyl, halophenyl, and alkylphenyl
- Y is methyl.
- n1, n3, m1, m2, m3, R 10 , R 11 , R 12 , R 13 , R 14 , R 15 , L 1 , and M 1 are as described above.
- R 4 is to realize the connection with the N atom on the nitrogen-containing backbone and to provide a suitable reaction site for the synthesis of the siRNA conjugate represented by formula (308).
- R 4 includes an R 2 linking group or a protected R 2 linking group, and a functional group that can react with siRNA to form the structure shown in A59.
- R 4 includes a first functional group that can form a phosphite with a group on the siRNA or nucleoside monomer represented by Nu and a second functional group that can react with a hydroxyl group or an amino group to form a covalent bond, or contains The solid phase carrier connected by the covalent bond.
- the first functional group is phosphoramidite, hydroxyl or protected hydroxyl.
- the second functional group is phosphoramidite, carboxyl or carboxylate.
- the second functional group is a solid support connected to other parts of the molecule via a covalent bond, and the covalent bond is formed by a hydroxyl group or an amino group.
- the solid support is connected via a phosphate bond, a carboxylate bond, or an amide bond.
- the solid phase carrier is a resin.
- the first functional group contains a hydroxyl group, -OR k, or a group represented by formula (C3);
- the second functional group contains formula (C1), (C2), (C3), (C1' ) Or (C3'):
- q 1 is an integer from 1 to 4
- X is O or NH
- M + is a cation
- R k is a hydroxyl protecting group
- SPS is a solid phase carrier
- the first functional group contains a phosphoramidite group, as shown in formula (C3)
- the phosphoramidite group can be combined with a hydroxyl group at any position on the nucleotide, such as the 2'hydroxyl group or
- the 3'hydroxyl group undergoes a coupling reaction to form a phosphite, which is oxidized or vulcanized to form a phosphodiester bond or a phosphorothioate bond represented by formula A59, and the conjugation molecule is conjugated to the siRNA.
- the compound of formula (321) can be conjugated to nucleotides without affecting the obtaining of the siRNA conjugate represented by formula (308).
- the compound of formula (321) is reacted with the hydroxyl group on the terminal nucleotide in the nucleotide sequence, and then During the oxidation or vulcanization process, a phosphodiester linkage or phosphorothioate linkage is formed, and the compound of formula (321) is conjugated to the siRNA.
- the first functional group contains a protected hydroxyl group.
- the second functional group includes a group that can react with a solid-phase support, and the reaction provides a conjugate molecule including the solid-phase support.
- the second functional group contains a carboxyl group, a carboxylate or phosphoramidite, as shown in formula (C1), (C2) or (C3), when the second functional group contains a carboxyl group or a carboxylate.
- the compound of formula (321) undergoes an esterification reaction or amidation reaction with a solid support, such as a hydroxyl group or an amino group on the resin, to form a conjugated molecule containing the solid support connected via a carboxylate bond.
- the compound of formula (321) undergoes a coupling reaction with a general solid-phase carrier, such as a hydroxyl group on a resin, and is oxidized to form a solid-phase carrier-containing compound connected via a phosphodiester bond Conjugation molecule.
- a general solid-phase carrier such as a hydroxyl group on a resin
- the nucleoside monomers are sequentially connected according to the phosphoramidite solid phase synthesis method to obtain the sense strand or the antisense strand of the siRNA with the conjugation group attached.
- the first functional group is deprotected and then coupled with the phosphoramidite group on the nucleoside monomer under coupling reaction conditions.
- the first functional group contains a hydroxyl group or a protected hydroxyl group
- the second functional group contains a solid-phase carrier connected via a carboxylate bond or a solid-phase carrier connected via an amide bond, or a phosphate bond
- the connected solid phase carrier is represented by formula (C1') or (C3').
- the compound of formula (321) replaces the solid phase carrier as a starting point
- nucleoside monomers are sequentially connected according to the phosphoramidite solid-phase synthesis method to obtain the sense strand or antisense strand of the siRNA with the conjugation group.
- the carboxylate may be expressed as -COO - M + , where M + is a cation, for example, one selected from a metal cation, an ammonium cation NH 4 + , and an organic ammonium cation.
- M + is a cation, for example, one selected from a metal cation, an ammonium cation NH 4 + , and an organic ammonium cation.
- the metal ion is selected from one of alkali metal ions, such as K + or Na + .
- the organic ammonium ion is an ammonium cation formed by a tertiary amine or a quaternary ammonium cation, such as an ammonium ion formed by triethylamine or N,N-diamine Ammonium ion formed by isopropylethylamine.
- the carboxylate is triethylamine carboxylate or N,N-diisopropylethylamine carboxylate.
- R 4 contains a structure represented by formula (B9), (B10), (B9'), (B10'), (B11), (B12), (B11') or (B12'):
- q 1 is an integer of 1-4
- q 2 is an integer of 1-10
- X is O or NH
- M + is a cation
- R k is a hydroxyl protecting group
- SPS is a solid phase carrier
- q 1 is 1 or 2.
- q 2 is an integer of 1-5.
- R 4 contains a structure represented by formula (B9) or (B10).
- R 4 contains a structure represented by formula (B11) or (B12).
- R k is Tr (trityl), MMTr (4-methoxytrityl), DMTr (4,4'-bismethoxytrityl), TMTr (4 ,4',4"-trimethoxytrityl).
- R k may be DMTr, that is, 4,4'-bismethoxytrityl ( 4,4'-dimethoxytrityl).
- L 1 The definition of L 1 is as described above.
- L 1 is used to connect the M 1 targeting group to the N atom on the nitrogen-containing backbone, thereby providing the liver targeting function for the siRNA conjugate represented by formula (308).
- L 1 includes any one of Formula (A1)-Formula (A26) or a combination thereof.
- the first functional group and the optional second functional group can be used to connect the conjugated molecule.
- the siRNA conjugate represented by formula (308) to any possible position of the nucleotide sequence for example, the conjugate molecule is connected to the end of the nucleotide sequence, and the conjugate molecule is connected to the end of the nucleotide sequence.
- each S 1 is independently M 1 . In some embodiments, each S 1 is independently a group formed by protecting at least one active hydroxyl group in M 1 by a hydroxyl protecting group. In some embodiments, each S 1 is independently a group formed by protecting all active hydroxyl groups present in M 1 by a hydroxyl protecting group. In some embodiments, any hydroxyl protecting group known to those skilled in the art can be used to protect the active hydroxyl group in M 1 .
- the protected hydroxyl group can be represented by the formula YCOO-, where each Y is independently selected from the group consisting of C 1 -C 10 alkyl and C 6 -C 10 aryl, and the C 1-
- the C 10 alkyl group and C 6 -C 10 aryl group are optionally substituted by one or more substituents selected from the group consisting of halogen and C 1 -C 6 alkyl.
- each Y is independently selected from the group consisting of: methyl, trifluoromethyl, difluoromethyl, monofluoromethyl, trichloromethyl, dichloromethyl, mono Chloromethyl, ethyl, n-propyl, isopropyl, phenyl, halophenyl, and C 1 -C 6 alkylphenyl.
- each S 1 is independently selected from the group consisting of A46-A54:
- S 1 is formula A49 or A50.
- each Y is independently selected from methyl, trifluoromethyl, difluoromethyl, monofluoromethyl, trichloromethyl, dichloromethyl, monochloromethyl, ethyl, normal One of propyl, isopropyl, phenyl, halophenyl, and alkylphenyl; in some embodiments, Y is methyl.
- the preparation method of the siRNA conjugate represented by formula (308) also includes the following steps: synthesizing another strand of siRNA (for example, when the above step synthesizes the siRNA sense strand to which the conjugate molecule is connected, also Including the synthesis of the antisense strand of siRNA according to the solid-phase synthesis method, and vice versa), separation of the sense strand and antisense strand, and annealing.
- the solid-phase carrier connected to the nucleotide sequence and/or the conjugate molecule is cleaved, and the necessary protective group is removed (at this time, each S in the compound of formula (321) 1 group is converted into the corresponding M 1 targeting group) to obtain the siRNA sense strand (or antisense strand) and the corresponding antisense strand (or sense strand) connected with the conjugate molecule, and the sense strand and antisense strand are annealed A double-stranded RNA structure is formed, and the siRNA conjugate represented by formula (308) is obtained.
- the preparation method of the siRNA conjugate represented by formula (308) includes the following steps: in the presence of coupling reaction conditions and coupling reagents, the compound represented by formula (321) is combined with the sense strand or reverse The first nucleoside monomer at the 3'end of the sense strand is contacted to connect the compound represented by formula (321) to the first nucleotide in the sequence.
- nucleoside monomers are sequentially connected in the 3'to 5'direction to synthesize the sense strand or antisense strand of siRNA; wherein, the compound of formula (321) is contained in R 4
- the first functional group and the second functional group the first functional group contains a protected hydroxyl group, and the second functional group has a structure as shown in formula (C1') or (C3').
- the connection of each nucleoside monomer includes four steps of deprotection, coupling, capping, oxidation or sulfurization; the sense or antisense strand of the nucleic acid with the conjugation group is obtained;
- nucleoside monomers are sequentially connected in a 3'to 5'direction according to the type and sequence of the antisense strand or sense strand nucleotides to synthesize the antisense strand or sense strand of the nucleic acid;
- the connection of each nucleoside monomer includes four steps of deprotection, coupling, capping, oxidation or vulcanization; removing the protective group and cutting with the solid phase carrier, separating and purifying to obtain the sense strand and antisense strand, and annealing.
- the preparation method of the siRNA conjugate represented by formula (308) includes the following steps: according to the nucleotide type and sequence of the sense strand or the antisense strand in the double-stranded siRNA, in accordance with 3'to 5'
- the nucleoside monomers are connected in order to synthesize the sense strand and the antisense strand.
- the connection of each nucleoside monomer includes four steps of deprotection, coupling, capping, oxidation or vulcanization to obtain a solid-phase carrier.
- the sense strand and the antisense strand attached to the solid phase carrier in the presence of coupling reaction conditions and coupling reagents, the compound represented by formula (321) and the sense strand attached to the solid phase carrier or connected to the solid phase
- the antisense strand on the carrier is contacted to connect the compound of formula (321) to the sense strand or the antisense strand, wherein the compound of formula (321) is a formula in which R 4 contains the first functional group and the first functional group is a phosphoramidite group (321) compound; remove the protective group and cut with the solid phase carrier, separate and purify separately, obtain the sense strand or antisense strand of siRNA, and anneal, wherein the sense strand or antisense strand of the siRNA is connected with a conjugating group group.
- the P atom in formula A59 is connected to the 3'end of the sense strand in the siRNA, and the preparation method of the siRNA conjugate represented by formula (308) includes:
- the method for removing the protective group R k in the compound of formula (321) includes contacting the compound of formula (321) with a deprotection reagent under deprotection conditions.
- the deprotection conditions include a temperature of 0-50°C, in some embodiments 15-35°C, a reaction time of 30-300 seconds, and in some embodiments 50-150 seconds, the deprotection reagent may be selected from trifluoroacetic acid One or more of trichloroacetic acid, dichloroacetic acid, and monochloroacetic acid, in some embodiments, dichloroacetic acid.
- the molar ratio of the deprotection reagent to the compound of formula (321) is 10:1 to 1000:1, in some embodiments 50:1 to 500:1.
- the coupling reaction conditions and coupling reagents can use any conditions and reagents suitable for the aforementioned coupling reaction. In some embodiments, the same conditions and reagents as the coupling reaction in the solid phase synthesis method used can be used.
- the conditions of the coupling reaction include a reaction temperature of 0-50°C, and in some embodiments, 15-35°C.
- the molar ratio of the compound of formula (321) to the nucleoside monomer is 1:1-1:50, and in some embodiments is 1:2-1:5; the molar ratio of the compound of formula (321) and the coupling reagent can be 1:1-1:50, in some embodiments 1:3-1:10, and the reaction time is 200-3000 seconds, and in some embodiments 500-1500 seconds.
- the coupling reagent is selected from one or more of 1H-tetrazole, 5-ethylthio 1H-tetrazole, 5-benzylthio 1H-tetrazole, in some embodiments 5-ethylsulfide Base 1H-tetrazolium.
- the coupling reaction may be carried out in an organic solvent, and the organic solvent is selected from one or more of anhydrous acetonitrile, anhydrous DMF, and anhydrous methylene chloride, and in some embodiments is anhydrous acetonitrile.
- the amount of the organic solvent is 3-50 L/mol, and in some embodiments, 5-20 L/mol.
- step (2) by the method of phosphoramidite nucleic acid solid-phase synthesis, using the nucleoside monomers prepared by the above steps and connected to the solid-phase carrier by the conjugate molecule, siRNA is synthesized according to the 3'-5' direction The sense strand SS of the conjugate. At this time, the conjugating group is attached to the 3'end of the resulting sense chain.
- conditions for the solid-phase synthesis described in steps (2) and (3) include deprotection conditions of nucleoside monomers, types and amounts of deprotection reagents, coupling reaction conditions, types and amounts of coupling reagents, and capping reaction conditions.
- the conditions, the type and amount of the capping reagent, the oxidation reaction conditions, the type and amount of the oxidizing reagent, the vulcanization reaction conditions, and the type and amount of the vulcanizing reagent adopt various reagents, amounts and conditions conventionally used in the art.
- the solid-phase synthesis in steps (2) and (3) may use the following conditions:
- the deprotection conditions of the nucleoside monomer include a temperature of 0-50°C, in some embodiments 15-35°C, a reaction time of 30-300 seconds, and in some embodiments 50-150 seconds, the deprotection reagent can be selected One or more of trifluoroacetic acid, trichloroacetic acid, dichloroacetic acid, monochloroacetic acid, and in some embodiments is dichloroacetic acid.
- the molar ratio of the deprotection reagent to the 4,4'-dimethoxytrityl protecting group on the solid support can be 2:1-100:1, and in some embodiments, 3:1-50:1 .
- the coupling reaction conditions include a temperature of 0-50°C, in some embodiments 15-35°C, and the molar ratio of the nucleic acid sequence linked to the solid support to the nucleoside monomer can be 1:1-1:50. In some embodiments, it is 1:5-1:15; the molar ratio of the nucleic acid sequence connected to the solid-phase carrier and the coupling reagent is 1:1-1:100, and in some embodiments, it is 1:50-1:80
- the reaction time and the choice of coupling reagents are the same as above.
- the capping reaction conditions include a temperature of 0-50°C, 15-35°C in some embodiments, a reaction time of 5-500 seconds, and 10-100 seconds in some embodiments, and the selection of the capping reagent is the same as described above.
- the molar ratio of the total amount of capping reagent to the nucleic acid sequence linked on the solid phase carrier is 1:100-100:1, and in some embodiments, 1:10-10:1.
- the capping reagent uses equimolar amounts of acetic anhydride and N-methylimidazole
- the molar ratio of acetic anhydride, N-methylimidazole and the nucleic acid sequence linked to the solid-phase carrier can be 1:1:10-10: 10:1, and in some embodiments 1:1:2-2:2:1.
- the oxidation reaction conditions include a temperature of 0-50°C, in some embodiments 15-35°C, a reaction time of 1-100 seconds, and in some embodiments 5-50 seconds, the oxidizing reagent is iodine in some embodiments (In some embodiments, it is provided in the form of iodine water).
- the molar ratio of the oxidizing reagent to the nucleic acid sequence connected to the solid support in the coupling step can be 1:1-100:1, and in some embodiments, 5:1-50:1.
- the vulcanization reaction conditions include a temperature of 0-50°C, in some embodiments 15-35°C, a reaction time of 50-2000 seconds, and in some embodiments 100-1000 seconds, the vulcanization reagent is hydrogenation in some embodiments. Xanthan.
- the molar ratio of the vulcanizing reagent to the nucleic acid sequence attached to the solid support in the coupling step is 10:1 to 1000:1, and in some embodiments, 10:1 to 500:1.
- the method also includes separating the sense strand and antisense strand of the siRNA.
- the separation method is well known to those skilled in the art, and generally includes cutting the synthesized nucleotide sequence from the solid support, removing the protective groups on the base, phosphate and ligand, purification and desalting .
- Cleaving the synthesized nucleotide sequence from the solid support and removing the protective groups on the base, phosphate and ligand can be carried out according to the conventional cutting and deprotection methods in siRNA synthesis.
- the obtained nucleotide sequence connected with the solid phase carrier is contacted with concentrated ammonia; in the process of deprotection, the protecting group YCOO- of the A46-A54 group is converted into a hydroxyl group, and the S 1 group is converted into the corresponding
- the M 1 group produces the conjugate represented by formula (308).
- the concentrated ammonia water can be 25-30% by weight ammonia water, and the amount of concentrated ammonia water can be 0.2ml/ ⁇ mol-0.8ml/ ⁇ mol compared with the target siRNA sequence.
- the method further includes contacting the nucleotide sequence removed from the solid phase carrier with triethylamine trihydrofluoride to remove the 2'-TBDMS protection.
- the corresponding nucleotide in the obtained target siRNA sequence has a free 2'-hydroxyl group.
- the dosage of pure triethylamine trihydrofluoride can be 0.4ml/ ⁇ mol-1.0ml/ ⁇ mol. In this way, the siRNA conjugate represented by formula (308) can be obtained.
- a preparative ion chromatography purification column can be used to complete the purification of nucleic acid through gradient elution of NaBr or NaCl; after the product is collected and combined, a reverse phase chromatography purification column can be used for desalting.
- the non-bridging oxygen atom or sulfur atom in the phosphodiester bond or phosphorothioate bond between the nucleotides is basically bonded to the sodium ion, and the formula ( The siRNA conjugate shown in 308) basically exists in the form of sodium salt.
- a well-known ion exchange method can be used to replace the sodium ions with hydrogen ions and/or other cations to obtain other forms of siRNA conjugates represented by formula (308). The cation is as described above.
- the purity and molecular weight of the nucleic acid sequence can be tested at any time to better control the synthesis quality.
- detection methods are well known to those skilled in the art.
- the purity of nucleic acid can be detected by ion exchange chromatography, and the molecular weight can be determined by liquid mass spectrometry (LC-MS).
- the annealing method is also well known to those skilled in the art.
- the synthesized sense strand (SS chain) and antisense strand (AS chain) can be simply mixed in an equimolar ratio, heated to 70-95°C in water for injection, and then cooled at room temperature to form a double bond through hydrogen bonding. Chain structure.
- the siRNA conjugate represented by formula (308) can be obtained.
- the synthesized siRNA conjugate represented by formula (308) can be characterized by methods such as liquid-mass spectrometry chromatography, etc., by means of molecular weight detection. It is determined that the synthesized siRNA conjugate is the siRNA conjugate represented by formula (308) designed for the target, and the sequence of the synthesized siRNA is the sequence of the desired siRNA, for example, one of the sequences listed in Tables 1a-1f One.
- the compound represented by formula (321) can be obtained by the following preparation method: the method includes combining the compound represented by formula (313) with a cyclic compound in an organic solvent, under esterification reaction conditions, and in the presence of a base and an esterification catalyst. Contact with acid anhydride, ion exchange, and separation to obtain the compound represented by formula (321):
- n1, n3, m1, m2, m3, R 10 , R 11 , R 12 , R 13 , R 14 , R 15 , L 1 , and S 1 are as described above;
- R 6 is a group providing R 4 in formula (321); in some embodiments, R 6 has the structure shown in formula (A61):
- R i is any group that can be connected to the N atom on the nitrogen-containing skeleton, connected to R k O and connected to a free hydroxyl group, and R k is a hydroxyl protecting group.
- R 4 contains a first functional group and a second functional group as a hydroxyl protecting group, and the second functional group contains a compound of formula (321) having a structure represented by formula (C1) or (C2).
- the esterification reaction conditions include a reaction temperature of 0-100°C and a reaction time of 8-48 hours. In some embodiments, the esterification reaction conditions are a reaction temperature of 10-40°C and a reaction time of 20-30. hour.
- the organic solvent includes epoxy-based solvents, ether-based solvents, halogenated alkane-based solvents, dimethylsulfoxide, N,N-dimethylformamide, and N,N-diisopropylethylamine One or more of.
- the epoxy solvent is dioxane and/or tetrahydrofuran
- the ether solvent is diethyl ether and/or methyl tert-butyl ether
- the halogenated alkane solvent is dichloromethane, trihydrofuran One or more of methyl chloride and 1,2-dichloroethane.
- the organic solvent is dichloromethane. Relative to the compound represented by formula (313), the amount of the organic solvent is 3-50 L/mol, and in some embodiments, 5-20 L/mol.
- the cyclic anhydride is one of succinic anhydride, glutaric anhydride, adipic anhydride, or pimelic anhydride, and in some embodiments, succinic anhydride.
- the molar ratio of the cyclic acid anhydride to the compound represented by formula (313) is 1:1-10:1, and in some embodiments, 2:1-5:1.
- the esterification catalyst may be any catalyst that catalyzes the esterification reaction, for example, the catalyst may be 4-dimethylaminopyridine.
- the molar ratio of the catalyst to the compound represented by formula (313) is 1:1-10:1, and in some embodiments, 2:1-5:1.
- the base may be any inorganic base, organic base or a combination thereof. Considering solubility and product stability, the base may be, for example, a tertiary amine. In some embodiments, the tertiary amine is triethylamine or N,N-diisopropylethylamine. The molar ratio of the tertiary amine to the compound represented by formula (313) is 1:1-20:1, and in some embodiments, 3:1-10:1.
- the ion exchange effect is to convert the compound of formula (321) into the desired form of carboxylic acid or carboxylate.
- the method of ion exchange is well known to those skilled in the art. Suitable ion exchange solutions and exchange conditions can be used to obtain The conjugate molecule of M + cation will not be detailed here.
- the ion exchange reaction is performed using a triethylamine phosphate solution, and the concentration of the triethylamine phosphate solution is 0.2-0.8M.
- the triethylamine phosphate solution The concentration of the triethylamine phosphate solution is 0.4-0.6M, relative to the compound of formula (313), the amount of the triethylamine phosphate solution is 3-6L/mol, in a further embodiment 4-5L/mol.
- any suitable separation method can be used to separate the compound of formula (321) from the reaction mixture.
- the solvent can be removed by evaporation, and then the compound of formula (321) can be separated by chromatographic methods.
- the solvent can be directly removed to obtain a crude product of the compound of formula (321), which can be directly used in subsequent reactions.
- the preparation method of the compound of formula (321) further comprises under the conditions of the condensation reaction, in an organic solvent, in the presence of a condensation agent, a condensation catalyst and a tertiary amine, the product obtained by the above ion exchange reaction It is further contacted with a solid phase carrier containing an amino group or a hydroxyl group.
- R 4 contains a first functional group and a second functional group
- the first functional group contains a hydroxyl protecting group
- the second functional group contains a compound of formula (321) having a structure represented by formula (C1′).
- the solid-phase carrier is one of the carriers used in solid-phase synthesis of siRNA, some of which are well known to those skilled in the art.
- the solid phase carrier may be selected from solid phase carriers containing active hydroxyl groups or amino functional groups.
- the solid phase carrier is an amino resin or a hydroxyl resin.
- the amino or hydroxyl resin has the following parameters: a particle size of 100-400 mesh, and a surface amino or hydroxyl loading of 0.2-0.5 mmol/g.
- the dosage ratio of the compound represented by the formula (321) to the solid phase carrier is 10-400 ⁇ mol compound per gram of solid phase carrier ( ⁇ mol/g). In some embodiments, the dosage ratio of the compound represented by formula (321) to the solid phase carrier is 50-200 ⁇ mol/g.
- the organic solvent may be any suitable solvent or mixed solvent known to those skilled in the art.
- the organic solvent is acetonitrile, epoxy solvents, ether solvents, haloalkane solvents, dimethyl sulfoxide, N,N-dimethylformamide, and N,N-diisopropyl.
- the epoxy solvent is dioxane and/or tetrahydrofuran
- the ether solvent is diethyl ether and/or methyl tert-butyl ether
- the halogenated alkane solvent is dichloromethane, trihydrofuran One or more of methyl chloride and 1,2-dichloroethane.
- the organic solvent is acetonitrile. Relative to the compound of formula (321), the amount of the organic solvent is 20-200 L/mol, and in some embodiments, 50-100 L/mol.
- the condensing agent can be benzotriazol-1-yl-oxytripyrrolidino phosphonium hexafluorophosphate (PyBop), 3- Diethoxyphosphoryl-1,2,3-benzotriazin-4(3H)-one (3-(Diethoxyphosphoryloxy)-1,2,3-benzotriazin-4(3H)-one, DEPBT) and/or O- O-benzotriazol-1-yl-tetramethyluronium hexafluorophosphate (O-benzotriazol-1-yl-tetramethyluronium hexafluorophosphate), in some embodiments, the condensing agent is O-benzotriazol-tetramethyl Urea hexafluorophosphate.
- the molar ratio of the condensing agent to the compound represented by formula (321) is 1:1-20:1, and in other embodiments is 1:1-5:1.
- the tertiary amine is triethylamine and/or N,N-diisopropylethylamine, in some embodiments it is N,N-diisopropylethylamine; the tertiary The molar ratio of amine to the compound represented by formula (321) is 1:1-20:1, and in some embodiments, 1:1-5:1.
- the method for preparing the compound of formula (321) may also include contacting the obtained condensation product with a capping reagent and an acylation catalyst in an organic solvent under capping reaction conditions to obtain the formula (321) Compound.
- the function of the capping reaction is to remove any reactive functional groups that have not yet been completely reacted, so as to avoid unnecessary by-products in subsequent reactions.
- the conditions of the capping reaction include a reaction temperature of 0-50°C, in some embodiments 15-35°C, and a reaction time of 1-10h, and in some embodiments 3-6h.
- the capping reagent can be the capping reagent used in siRNA solid-phase synthesis, and the capping reagent used in siRNA solid-phase synthesis is well known to those skilled in the art.
- the capping reagent consists of capping reagent 1 (cap1) and capping reagent 2 (cap2), wherein capping reagent 1 is N-methylimidazole, and in some embodiments, it is Pyridine/acetonitrile is provided as a mixed solution, wherein the volume ratio of pyridine to acetonitrile is 1:10-1:1, in some embodiments, 1:3-1:1, and the total volume of pyridine and acetonitrile is compared with N-methyl The volume ratio of imidazole is 1:1-10:1, and in some embodiments, 3:1-7:1.
- the capping reagent 2 is acetic anhydride.
- the capping reagent 2 is provided in the form of a solution of acetic anhydride in acetonitrile, wherein the volume ratio of acetic anhydride and acetonitrile is 1:1-1:10, and in a further embodiment is 1:2-1 :6.
- the ratio of the volume of the pyridine/acetonitrile mixed solution of N-methylimidazole to the mass of the compound of formula (321) is 5ml/g-50ml/g, and in some embodiments 15ml/g- 30ml/g.
- the ratio of the volume of the acetonitrile solution of acetic anhydride to the mass of the compound of formula (321) is 0.5ml/g-10ml/g, and in some embodiments is 1ml/g-5ml/g.
- the capping reagent uses equimolar amounts of acetic anhydride and N-methylimidazole.
- the organic solvent is acetonitrile, epoxy solvents, ether solvents, haloalkane solvents, dimethyl sulfoxide, N,N-dimethylformamide, and N,N-diisopropyl.
- the organic solvent is acetonitrile.
- the amount of the organic solvent is 10-50 L/mol, and in some embodiments, 5-30 L/mol.
- the acylation catalyst may be selected from any catalyst that can be used for esterification condensation or amidation condensation, such as basic heterocyclic compounds.
- the acylation catalyst is 4-dimethylaminopyridine.
- the mass ratio of the catalyst to the compound represented by formula (321) is 0.001:1 to 1:1, and in some embodiments is 0.01:1 to 0.1:1.
- any suitable separation method may be used to separate the compound of formula (321) from the reaction mixture.
- the compound of formula (321) can be obtained by fully washing with an organic solvent and filtering to remove unreacted reactants, excess capping reagents and other impurities.
- the organic solvent is selected from acetonitrile and dichloromethane. , Methanol, in some embodiments acetonitrile.
- the preparation method of the conjugate molecule represented by formula (321) includes combining the compound represented by formula (313) with phosphorous in an organic solvent, under coupling reaction conditions, and in the presence of a coupling reagent.
- the diamide is contacted and separated to obtain the compound represented by formula (321).
- R 4 contains a first functional group and a second functional group
- the first functional group contains a hydroxyl protecting group
- the second functional group contains a compound of formula (321) having a structure represented by formula (C3).
- the coupling reaction conditions include that the temperature can be 0-50°C, for example 15-35°C, and the molar ratio of the compound of formula (313) to the phosphoramidite can be 1:1-1:50, For example, it is 1:5-1:15; the molar ratio of formula (313) compound and coupling reagent can be 1:1-1:100, for example, 1:50-1:80; reaction time can be 200-3000 seconds , For example, 500-1500 seconds.
- the phosphoramidite may be, for example, bis(diisopropylamino)(2-cyanoethoxy)phosphine, which is commercially available or synthesized according to a method known in the art.
- the coupling reagent is selected from one or more of 1H-tetrazole, 5-ethylthio 1H-tetrazole, 5-benzylthio 1H-tetrazole, for example 5-ethylthio 1H-tetrazole Azole.
- the coupling reaction can be carried out in an organic solvent, and the organic solvent is selected from one or more of anhydrous acetonitrile, anhydrous DMF, and anhydrous methylene chloride, for example, anhydrous acetonitrile.
- the amount of the organic solvent is 3-50 L/mol, for example, 5-20 L/mol.
- the hydroxyl group in the compound of formula (313) reacts with the phosphoramidite to form a phosphoramidite group.
- the solvent can be directly removed to obtain a crude product of the compound of formula (321), which can be directly used in subsequent reactions.
- the preparation method of the compound of formula (321) further includes the following steps: under coupling reaction conditions, in an organic solvent, and in the presence of a coupling reagent, the separated product is further combined with a hydroxyl-containing product.
- the solid support is brought into contact.
- the compound of formula (321) is isolated.
- R 4 contains a first functional group and a second functional group, the first functional group containing a hydroxyl protective group, the second functional group having a compound of the formula (C3 ') of formula (321) structure shown in FIG.
- the solid phase carrier is a solid phase carrier known in the art that can be used for nucleic acid solid phase synthesis, for example, it may be a commercially available universal solid phase carrier (NittoPhase HLUnyLinker TM 300 Oligonucleotide Synthesis Support, Kinovate Life Sciences company, the structure is shown in formula B80):
- the deprotection reaction is well known to those skilled in the art.
- the deprotection conditions include a temperature of 0-50°C, such as 15-35°C, and a reaction time of 30-300 seconds, such as 50-150 seconds.
- the deprotection reagent can be selected from one or more of trifluoroacetic acid, trichloroacetic acid, dichloroacetic acid, and monochloroacetic acid.
- the deprotection reagent is dichloroacetic acid.
- the molar ratio of the deprotection reagent to the -DMTr (4,4'-dimethoxytrityl) protecting group on the stationary phase is 2:1-100:1, for example, 3:1-50:1.
- the coupling reaction conditions and the selection of coupling reagents can be as described above.
- the free hydroxyl group formed in the deprotection reaction reacts with the phosphoramidite group to form a phosphite linkage.
- the capping reaction conditions include a temperature of 0-50°C, such as 15-35°C, and a reaction time of 5-500 seconds, such as 10-100 seconds, and the capping reaction is performed in the presence of a capping reagent.
- the selection and amount of capping reagent can be as described above.
- the oxidation reaction conditions include a temperature of 0-50°C, such as 15-35°C, a reaction time of 1-100 seconds, such as 5-50 seconds, and an oxidizing reagent such as iodine (in some embodiments, iodine Provided in the form of water).
- an oxidizing reagent such as iodine (in some embodiments, iodine Provided in the form of water).
- the molar ratio of the oxidizing reagent to the nucleic acid sequence linked to the solid phase carrier is 1:1-100:1, for example, it may be 5:1-50:1.
- R 6 is one of the groups of formula B7 or B8,
- the compound represented by formula (313) can be obtained by the following preparation method: in an organic solvent, under amidation reaction conditions, and in the presence of a condensing agent and tertiary amine for amidation reaction, the formula (314) The compound is contacted with the compound represented by formula (A-1) or the compound represented by formula (A-2), and then separated:
- n1, n3, m1, m2, m3, R 10 , R 11 , R 12 , R 13 , R 14 , R 15 , L 1 , S 1 , q 2 and R k are each defined and selectable ranges as As mentioned earlier.
- the amidation reaction conditions may include a reaction temperature of 0-100°C and a reaction time of 1-48 hours. In some embodiments, the amidation reaction conditions may include a reaction temperature of 10-40°C and a reaction time of 2- 16 hours.
- the organic solvent is alcohol solvent, epoxy solvent, ether solvent, halogenated alkane solvent, dimethyl sulfoxide, N,N-dimethylformamide and N,N-diiso One or more of propylethylamine.
- the alcohol solvent is one or more of methanol, ethanol, and propanol in some embodiments, and is ethanol in some embodiments.
- the epoxy solvent is dioxane and/or tetrahydrofuran in some embodiments.
- the ether solvent is diethyl ether and/or methyl tert-butyl ether in some embodiments.
- the halogenated alkane solvent is one or more of dichloromethane, chloroform and 1,2-dichloroethane in some embodiments.
- the organic solvent is dichloromethane. Relative to the compound of formula (314), the amount of the organic solvent is 3-50 L/mol, and in a further embodiment, 3-20 L/mol.
- the amidation reaction condensing agent is benzotriazol-1-yl-oxytripyrrolidinylphosphonium hexafluorophosphate, 3-diethoxyphosphoryl-1,2, 3-Benzazole 4(3H)-one, 4-(4,6-dimethoxytriazin-2-yl)-4-methylmorpholine hydrochloride, 2-ethoxy-1-ethoxy Carbonyl-1,2-dihydroquinoline (EEDQ) or O-benzotriazole-tetramethylurea hexafluorophosphate, in a further embodiment 3-diethoxyphosphoryl- 1,2,3-Benzazole 4(3H)-one.
- the molar ratio of the amidation reaction condensing agent to the compound represented by formula (314) may be 1:1-10:1, and in some embodiments, 2.5:1-5:1.
- the tertiary amine is triethylamine or N,N-diisopropylethylamine, and in a further embodiment is N,N-diisopropylethylamine.
- the molar ratio of the tertiary amine to the compound represented by formula (314) is 3:1-20:1, and in some embodiments, 5:1-10:1.
- the compounds of formula (A-1) and formula (A-2) can be prepared in any suitable manner.
- R k is a DMTr group
- the compound of formula (A-1) can be prepared by reacting calcium glycerate with DMTrCl; similarly, 3-amino-1,2-propanediol can be contacted with cyclic anhydride first, and then The compound of formula (A-2) is prepared by reacting with DMTrCl.
- the compound of formula (313) can also be prepared by sequentially reacting the compound represented by formula (314) with the cyclic anhydride, 3-amino-1,2-propanediol and DMTrCl. It is easily understood by those skilled in the art that these modifications will not affect the structure and function of the compound of formula (313), and these modifications are easily realized by those skilled in the art on the basis of the above methods.
- any suitable separation method can be used to separate the compound of formula (313) from the reaction mixture.
- the solvent can be removed by evaporation, and then the compound of formula (313) can be separated by chromatographic methods.
- the solvent can be directly removed to obtain a crude product of the compound of formula (313), which can be directly used in subsequent reactions.
- the compound represented by formula (314) can be obtained by the following preparation method: the method includes in an organic solvent, in the presence of a condensing agent for amidation reaction and a tertiary amine, under condensation reaction conditions, the formula ( The compound represented by 320) is contacted with the compound represented by formula (316), and then separated:
- n1, n3, m1, m2, m3, R 10 , R 11 , R 12 , R 13 , R 14 , and R 15 have the same definitions and selectable ranges as described above.
- the compound of formula (316) can be prepared by, for example, the compounds disclosed in J. Am. Chem. Soc. 2014, 136, 16958-16961, or the compound of formula (316) can be prepared by a person skilled in the art by various methods, for example, Some compounds of formula (316) were prepared with reference to the method disclosed in Example 1 of U.S. Patent No. 8,106,022 B2, and the entire contents of the above documents are incorporated herein by reference in their entirety.
- the condensation reaction conditions include a reaction temperature of 0-100°C and a reaction time of 0.1-24 hours, and in some embodiments, a reaction temperature of 10-40°C and a reaction time of 0.5-16 hours.
- the organic solvent is acetonitrile, epoxy solvents, ether solvents, haloalkane solvents, dimethyl sulfoxide, N,N-dimethylformamide, and N,N-diisopropyl.
- the halogenated alkane solvent is one or more of dichloromethane, chloroform and 1,2-dichloroethane.
- the organic solvent is two Methyl chloride. Relative to the compound of formula (320), the amount of the organic solvent is 3-50 L/mol, and in some embodiments, 5-20 L/mol.
- the amidation reaction condensing agent is benzotriazol-1-yl-oxytripyrrolidinylphosphonium hexafluorophosphate, 3-diethoxyphosphoryl-1,2, 3-Benzazole 4(3H)-one (DEPBT), O-benzotriazole-tetramethylurea hexafluorophosphate/ester, 4-(4,6-dimethoxytriazin-2-yl) )
- One or more of 4-methylmorpholine hydrochloride or 1-hydroxybenzotriazole in a further embodiment, benzotriazol-1-yl-oxytripyrrolidinyl phosphonium A mixture of hexafluorophosphate and 1-hydroxybenzotriazole, wherein benzotriazol-1-yl-oxytripyrrolidinyl phosphonium hexafluorophosphate/salt and 1-hydroxybenzotriazole are etc. Molar amount. The molar ratio of the total amidation reaction condensing agent
- the tertiary amine can be N-methylmorpholine, triethylamine, or N,N-diisopropylethylamine, and in some embodiments, it is N-methylmorpholine; the tertiary amine has the same formula ( The molar ratio of the compound shown in 316) may be 2:1-10:1, and in some embodiments, 2:1-5:1.
- any suitable separation method can be used to separate the compound of formula (314) from the reaction mixture.
- the solvent can be removed by evaporation, and then the compound of formula (314) can be separated by chromatography.
- the solvent can be directly removed to obtain a crude product of the compound of formula (314), which can be directly used in subsequent reactions.
- siRNA conjugate of the present disclosure can also be used in combination with other pharmaceutically acceptable excipients, which can be one or more of various formulations or compounds commonly used in the art.
- pharmaceutically acceptable excipients which can be one or more of various formulations or compounds commonly used in the art.
- pharmaceutically acceptable excipients which can be one or more of various formulations or compounds commonly used in the art.
- siRNA composition and siRNA conjugate of the present disclosure
- the present disclosure provides the use of the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure in the preparation of a medicament for the treatment and/or prevention of myasthenia gravis.
- the present disclosure provides a method for preventing and/or treating myasthenia gravis, the method comprising administering an effective amount of the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure in need Of subjects.
- the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure can be used to prevent and/or treat myasthenia gravis, or to prepare drugs for the prevention and/or treatment of myasthenia gravis.
- administration/administration refers to a method or approach that allows the siRNA, pharmaceutical composition and/or siRNA conjugate of the present disclosure to be at least partially positioned at a desired site to produce a desired effect.
- the siRNA, pharmaceutical composition, and/or siRNA conjugate of the present disclosure are placed in a subject.
- the routes of administration suitable for the methods of the present disclosure include local administration and systemic administration. Generally speaking, local administration results in the delivery of more siRNA conjugates to a specific site than in the subject's systemic circulation; while systemic administration results in the delivery of the siRNA, pharmaceutical composition and/or siRNA conjugate of the present disclosure Basic systemic circulation to the subject.
- an administration method capable of delivering drugs to the liver is adopted.
- the subject can be administered to the subject by any suitable route known in the art, including but not limited to: oral or parenteral routes, such as intravenous administration, intramuscular administration, subcutaneous administration, and transdermal administration. Medicine, airway administration (aerosol), pulmonary administration, nasal administration, rectal administration and topical administration (including buccal administration and sublingual administration).
- the frequency of administration can be one or more times per day, every week, every two weeks, every three weeks, every month, every two months, every three months, every six months, or every year.
- the dosage of the siRNA, pharmaceutical composition or siRNA conjugate described in the present disclosure can be a conventional dosage in the art, and the dosage can be determined according to various parameters, especially the age, weight and sex of the subject. Toxicity and efficacy can be measured in cell culture or laboratory animals through standard pharmaceutical procedures, such as measuring LD 50 (lethal dose that kills 50% of the population), ED 50 (in quantitative response, the dose that can cause 50% of the maximum response intensity, In the qualitative response, it refers to the dose that can cause a positive response in 50% of the subjects) or IC 50 (the concentration of inhibitor/drug when the quantitative response is inhibited by half).
- the range of human doses can be derived based on data obtained from cell culture analysis and animal studies.
- the siRNA dosage can be 0.001-100 mg/kg body weight, in some embodiments 0.01-50 mg/kg body weight, in some embodiments 0.05-20 mg/kg body weight, and In some embodiments, it is 0.1-15 mg/kg body weight, and in other embodiments, it is 0.1-10 mg/kg body weight;
- the amount of siRNA may be 0.001- 50 mg/kg body weight, in some embodiments 0.01-10 mg/kg body weight, in some embodiments 0.05-5 mg/kg body weight, and in some embodiments 0.1-3 mg/kg body weight.
- the present disclosure provides a method for inhibiting C5 gene expression in hepatocytes, the method comprising combining an effective amount of the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure with the liver.
- Cell contact, the siRNA and/or pharmaceutical composition and/or siRNA conjugate of the present disclosure are introduced into the hepatocytes, and the purpose of inhibiting the expression of C5 gene in the hepatocytes is achieved through the mechanism of RNA interference.
- the liver cells may be selected from liver cancer cell lines such as SMMC-7721, HepG2, Huh7, or isolated primary liver cells.
- the cell is a HepG2 liver cancer cell.
- the amount of siRNA in the provided modified siRNA, pharmaceutical composition and/or siRNA conjugate is generally such an amount that it is sufficient to reduce the expression of the target gene, and This results in an extracellular concentration of 1 pM to 1 ⁇ M, or 0.01 nM to 100 nM, or 0.05 nM to 50 nM, or 0.05 nM to about 5 nM at the surface of the target cell.
- the amount required to achieve this local concentration will vary with various factors, including the delivery method, the delivery site, the number of cell layers between the delivery site and the target cell or tissue, the delivery route (local or systemic), etc. .
- the concentration at the delivery site can be significantly higher than the concentration at the surface of the target cell or tissue.
- the present disclosure provides a kit comprising an effective amount of at least one of the modified siRNA, pharmaceutical composition and siRNA conjugate of the present disclosure.
- kits described herein can provide modified siRNA in one container.
- the kits described herein may include a container that provides pharmaceutically acceptable excipients.
- the kit may also contain other ingredients, such as stabilizers or preservatives.
- the kits described herein may contain at least one other therapeutic agent in a container other than the container that provides the modified siRNA described herein.
- the kit may include instructions for mixing the modified siRNA with pharmaceutically acceptable carriers and/or excipients or other ingredients (if any).
- the modified siRNA and pharmaceutically acceptable carriers and/or adjuvants, as well as the modified siRNA, pharmaceutical compositions and/or siRNA conjugates, and/or pharmaceutically acceptable Excipients can be provided in any form, such as liquid form, dried form or lyophilized form.
- the modified siRNA and pharmaceutically acceptable carriers and/or adjuvants and the pharmaceutical composition and/or siRNA conjugate and optional pharmaceutically acceptable adjuvants are substantially pure and/or Or sterile.
- sterile water can be provided in the kit of the present disclosure.
- the reagents and media used in the following examples are all commercially available products, and the nucleic acid electrophoresis, real-time PCR and other operations used are described in Molecular Cloning (Cold Spring Harbor Laboratory Press (1989)) Method to proceed.
- Lipofectamine TM 2000 (Invitrogen) is used as the transfection reagent, and the specific operation refers to the instructions provided by the manufacturer .
- the experimental data are Said that the data analysis uses Graphpad prism5.0 statistical analysis software.
- conjugate 1 (ie L10-siC5a1M1SP) was synthesized.
- the siRNA conjugated in this conjugate has the sense strand and antisense strand sequences corresponding to conjugate 1 in Table 3.
- the L-10 compound was synthesized according to the following method:
- GAL-1 N-acetyl-D-galactosamine hydrochloride, CAS number: 1772-03-8, purchased from Ningbo Hongxiang Biochemical Company, 463.8mmol
- acetic anhydride purchased from Enox Company, 5565.6mmol
- TMSOTf Trimethylsilyl fluoromethanesulfonate
- step (1-1-1b) The GAL-3 (26.9g, 81.7mmol) obtained in step (1-1-1b) was dissolved in 136ml of anhydrous 1,2-dichloroethane, and the dried 30g molecular sieve powder, then add 9.0g 5-hexen-1-ol (CAS number: 821-41-0, purchased from Adamas-beta company, 89.9mmol), stir at room temperature for 30 minutes, add under ice bath and nitrogen protection 9.08g TMSOTf (40.9mmol), stirred and reacted overnight at room temperature.
- 9.0g 5-hexen-1-ol CAS number: 821-41-0, purchased from Adamas-beta company, 89.9mmol
- the filtrate is diluted with 300ml dichloromethane, filtered with diatomaceous earth, and then 500ml saturated sodium bicarbonate aqueous solution is added and stirred for 10 minutes to wash, separate the organic phase, the aqueous phase is extracted once with 300ml dichloroethane, and the organic phases are combined They were washed with 300ml saturated sodium bicarbonate aqueous solution and 300ml saturated brine respectively, the organic phase was separated, dried with anhydrous sodium sulfate, and the solvent was evaporated under reduced pressure to obtain 41.3g of yellow sugar thin product GAL-4, which was carried out directly without purification.
- One-step oxidation reaction is carried out directly without purification.
- GAL-4 (14.9g, 34.7mmol,) obtained according to the method described in step (1-1-1c) was dissolved in a mixed solvent of 77ml dichloromethane and 77ml acetonitrile, and 103ml deionized water and 29.7g were added respectively Sodium periodate (CAS number: 7790-28-5, purchased from Aladdin Company, 138.8mmol), stirred under ice water bath for 10 minutes, adding ruthenium trichloride (CAS number: 14898-67-0, purchased from An Nai Kyrgyzstan, 238mg, 1.145mmol), react at room temperature overnight.
- the reaction solution was diluted with 300 ml of water and stirred, and saturated sodium bicarbonate was added to adjust the pH to about 7.5.
- the organic phase was separated and discarded.
- the aqueous phase was extracted with dichloromethane three times, 200 ml each time, and the organic phase was discarded. Adjust the pH of the aqueous phase to about 3 with citric acid solid, extract three times with 200ml of dichloromethane, combine the organic phases, dry with anhydrous sodium sulfate, and evaporate the solvent under reduced pressure to obtain 6.85g of white foamy solid product GAL-5 .
- step (1-1-2) The L-8 (40g, 27.09mmol, obtained by combining multiple batches) obtained in step (1-1-2) and A-1 (41.418g, 81.27) obtained in step (1-1-3a) mmol), dissolve in 271ml of dichloromethane, add 3-diethoxyphosphoryl-1,2,3-benzoxazole 4(3H)-one (DEPBT) (24.318g, 81.37mmol), then add diiso Propylethylamine (21.007g, 162.54mmol), stirred for 1.5h at 25°C, washed the organic phase with 800ml saturated sodium bicarbonate, and extracted the aqueous phase with dichloromethane 3 times, each time with 50ml, washed with 150ml saturated brine The organic phase and the aqueous phase were extracted once with 50 ml of dichloromethane.
- DEPBT 3-diethoxyphosphoryl-1,2,3-benzoxazole 4(3H)-one
- the L-10 compound is prepared by attaching the L-9 conjugated molecule to the solid support.
- HBTU O-benzotriazole-tetramethylurea hexafluorophosphate
- DIEA diisopropylethylamine
- the filter cake was rinsed with DCM twice, 300ml each time, and acetonitrile rinsed 3 times, each 300ml each time, vacuum oil pump drying for 18h, and then add the raw materials (CapA, CapB, 4-dimethylaminopyridine (DMAP) and acetonitrile) according to the feeding ratio shown in Table 2 for capping reaction.
- DMAP 4-dimethylaminopyridine
- the L-10 compound (ie, the L-9 conjugate molecule connected to the solid phase carrier) was 102 g, and the loading was 90.8 ⁇ mol/g.
- CapA and CapB are capping reagent solutions
- CapA is a pyridine/acetonitrile mixed solution of 20% by volume N-methylimidazole, and the volume ratio of pyridine to acetonitrile is 3:5
- CapB is a solution of 20% by volume of acetic anhydride in acetonitrile.
- each connection of a nucleoside monomer includes four steps of deprotection, coupling, capping, oxidation or vulcanization. Among them, when two nucleotides are connected by phosphate ester, when the next nucleoside monomer is connected, there are four steps of deprotection, coupling, capping, and oxidation. When two nucleotides are connected by phosphorothioate, when the next nucleoside monomer is connected, there are four steps of deprotection, coupling, capping, and vulcanization.
- the synthesis conditions are given as follows:
- the nucleoside monomer is provided in 0.1M acetonitrile solution.
- the conditions of the deprotection reaction in each step are the same, that is, the temperature is 25°C, the reaction time is 70 seconds, and the deprotection reagent is dichloroacetic acid in dichloromethane (3% v/v), the molar ratio of dichloroacetic acid to the 4,4'-dimethoxytrityl protecting group on the solid support is 5:1.
- each step of the coupling reaction is the same, including the temperature of 25°C, the molar ratio of the nucleic acid sequence connected to the solid-phase carrier to the nucleoside monomer is 1:10, the molar ratio of the nucleic acid sequence connected to the solid-phase carrier and the coupling reagent The ratio is 1:65, the reaction time is 600 seconds, and the coupling reagent is a 0.5 M acetonitrile solution of 5-(Ethylthio)-1H-tetrazole (ETT).
- ETT Ethylthio-1H-tetrazole
- the capping conditions for each step are the same, including a temperature of 25°C and a reaction time of 15 seconds.
- the oxidation reaction conditions for each step are the same, including a temperature of 25°C, a reaction time of 15 seconds, and an oxidizing reagent of 0.05M iodine water.
- the molar ratio of iodine to the nucleic acid sequence connected to the solid phase carrier in the coupling step is 30:1.
- each step of the vulcanization reaction is the same, including the temperature of 25°C, the reaction time of 300 seconds, and the vulcanizing reagent is hydroxanthin.
- the molar ratio of the vulcanizing reagent to the nucleic acid sequence connected to the solid support in the coupling step is 120:1.
- the nucleic acid sequence connected on the solid phase carrier is cut, deprotected, purified, and desalted in sequence, and then lyophilized to obtain the sense strand, where,
- the cutting and deprotection conditions are as follows: add the synthesized nucleotide sequence linked to the carrier into 25wt% ammonia water, the amount of ammonia water is 0.5ml/ ⁇ mol, react at 55°C for 16h, filter to remove the remaining carrier, and remove the supernatant. Concentrate to dryness in vacuo.
- eluent A 20mM sodium phosphate (pH 8.1)
- elution gradient: eluent A: eluent B 100:0-50:50
- the specific conditions include using a Sephadex G25 (Sephadex G25) as the filler and eluting with deionized water.
- the detection method is as follows: ion exchange chromatography (IEX-HPLC) is used to detect the purity of the above-mentioned sense chain, and liquid mass spectrometry (LC-MS) is used to analyze the molecular weight. The measured value is consistent with the theoretical value, indicating that the synthesized 3'end is the sense strand SS conjugated with an L-9 conjugate molecule.
- IEX-HPLC ion exchange chromatography
- LC-MS liquid mass spectrometry
- the universal solid-phase carrier (UnyLinker TM loaded HL Solid Supports, Kinovate Life Sciences Company) initiated the cycle to synthesize the antisense strand AS of conjugate 1 in Table 3.
- the deprotection, coupling, capping, oxidation or vulcanization reaction conditions, cleavage and deprotection, purification and desalting conditions in the solid-phase synthesis method are the same as the synthetic sense strand. The difference is: for the antisense strand, it has a 5'-phosphate at the first nucleotide at the 5'-end.
- the CPR-I monomer (Suzhou Gima, Cat#13-2601-XX) is connected to the 5'end of the antisense strand through a four-step reaction of deprotection, coupling, capping and oxidation , Forming a 5'-phosphate modification.
- the deprotection, coupling, capping, oxidation reaction conditions, cleavage and deprotection, purification and desalting conditions used are the same as the synthetic sense strand. Then lyophilized to obtain the antisense strand. The purity of the antisense strand was detected by ion exchange chromatography (IEX-HPLC), and the molecular weight was analyzed by liquid mass spectrometry (LC-MS). As a result, the measured value agrees with the theoretical value, indicating that the synthesized antisense strand AS has the target sequence.
- IEX-HPLC ion exchange chromatography
- LC-MS liquid mass spectrometry
- the sense strand and the antisense strand were separately dissolved in water for injection to obtain a 40 mg/mL solution, mixed in an equimolar ratio, heated at 50° C. for 15 min, and cooled at room temperature to obtain an annealed product, which was lyophilized to obtain a lyophilized powder.
- Use ultrapure water (Milli-Q ultrapure water meter, resistivity 18.2M ⁇ *cm(25°C)) to dilute the conjugate to a concentration of 0.2mg/mL, then use liquid mass spectrometry (LC-MS, Liquid Chromatography-Mass Spectrometry, purchased from Waters, Model: LCT Premier) for molecular weight detection.
- the measured value is consistent with the theoretical value, indicating that the synthesized conjugate 1 is a target designed double-stranded nucleic acid sequence with an L-9 conjugate molecule. Its structure is shown in formula (403), and the conjugated siRNA sequence is shown in Table 3, which corresponds to the sequence of conjugate 1 (ie L10-siC5a1M1SP).
- conjugates 2-6 shown in Table 3 were synthesized, and molecular weight detection was performed. The difference is that the sense strand and antisense strand sequences used in the synthesis are shown in Table 3, corresponding to conjugate 2, conjugate 3, conjugate 4, conjugate 5, or conjugate 6. The sequence of the sense strand and antisense strand of the conjugated siRNA. Thus, conjugates 2-6 were obtained, respectively.
- the conjugates 7-8 shown in Table 3 were synthesized, and molecular weight detection was performed. The difference is that the sense strand and antisense strand sequences used in the synthesis are the sequences corresponding to the sense strand and antisense strand of the siRNA conjugated in Conjugate 7 or Conjugate 8, as shown in Table 3.
- the antisense strands of Conjugate 7 and Conjugate 8 are compared with the antisense strand of Conjugate 1, and the first nucleotide at the 5'-end thereof does not have a 5'-phosphate.
- conjugates 7-8 were obtained respectively.
- Table 3 lists the conjugate number and siRNA sequence composition.
- siRNA 1 shown in Table 4a was synthesized, the difference being:
- the sequence of siRNA 1 is compared with the sequence of the siRNA antisense strand conjugated in Conjugate 1.
- the first nucleotide at the 5'-end of siRNA 1 does not have a 5'-phosphate. Therefore, in the process of preparing the antisense chain according to the solid-phase phosphoramidite method, after connecting the last nucleoside monomer of the antisense chain, there is no need to connect the CPR-I monomer.
- siRNA 1 was prepared.
- siRNA 2-6 Using the same method as the preparation of siRNA 1, we synthesized siRNA 2-6. The difference is that the sequences of the siRNA sense strand and antisense strand used in the synthesis are corresponding to siRNA 2, siRNA 3, siRNA as shown in Table 4a. 4. The sequences of the sense strand and antisense strand of siRNA 5 or siRNA 6 to obtain siRNA 2-6, respectively.
- Table 4a lists the siRNA number and siRNA sequence composition.
- the Cy5 phosphoramidite monomer (purchased from Shanghai Zhaowei Technology Development Co., Ltd., the item number is deprotection, coupling, capping, and oxidation) OP-057) is connected to the 5'end of the sense strand; (2) The first nucleotide at the 5'end of the siRNA antisense strand conjugated in Cy5-Conjugate 1 does not have a 5'-phosphate.
- step (1-3) In the process of preparing the antisense strand by the solid-phase phosphoramidite method described in step (1-3), after connecting the last nucleoside monomer of the antisense strand, there is no need to connect the CPR-I monomer.
- the conditions for cleavage and deprotection of the sense strand are as follows: the synthesized nucleotide sequence connected with the carrier is added to the AMA solution (a mixed solution of 40wt% methylamine aqueous solution and 25wt% ammonia water in a volume ratio of 1:1), and the amount of AMA solution It was 0.5ml/ ⁇ mol, reacted for 2h at 25°C in a water bath, filtered to remove the remaining carrier, and concentrated the supernatant to dryness in vacuo.
- the purification and desalting conditions of the sense strand are the same as the purification and desalting conditions in the step (1-2) of Preparation Example 1 when synthesizing the sense strand. Subsequently, it was lyophilized to obtain the sense chain of Cy5-conjugate 1.
- Cy5-conjugate 1 is obtained.
- the 5'end of the siRNA sense strand of the siRNA conjugate is covalently attached with a Cy5 fluorescent group, and has the sense strand and corresponding to Cy5-conjugate 1 shown in Table 4b.
- Antisense strand sequence is obtained.
- Cy5-conjugate 2 was prepared by the same method as that of Cy5-conjugate 1, and the molecular weight was detected. The difference is that the sense strand and antisense strand sequences used in the synthesis are respectively the sequences of the sense strand and antisense strand of the siRNA conjugated in Cy5-conjugate 2 shown in Table 4b. Thus, Cy5-conjugate 2 was obtained.
- Cy5-siRNA 1 was prepared using the same method as that of Cy5-conjugate 1, and the molecular weight was detected. The difference is that the universal solid phase carrier (UnyLinker TM loaded HL Solid Supports, Kinovate Life Sciences, Inc.) initiates the cycle. Thus, Cy5-siRNA 1 was obtained.
- the universal solid phase carrier UnyLinker TM loaded HL Solid Supports, Kinovate Life Sciences, Inc.
- Cy5-siRNA 2 was prepared by the same method as Cy5-siRNA 1 and the molecular weight was detected. The difference is that the sense strand and antisense strand sequences used in the synthesis are those corresponding to the sense strand and antisense strand of Cy5-siRNA 2 shown in Table 4b. Thus, Cy5-siRNA 2 is obtained.
- Table 4b lists the numbers and siRNA sequences of Cy5-conjugate 1, Cy5-conjugate 2, Cy5-siRNA 1 and Cy5-siRNA 2.
- H-DMEM complete medium HyClone
- FBS fetal bovine serum
- RMBIO penicillin double antibody
- HepG2 cells purchased from Nanjing Kebai Biotechnology Co., Ltd. were cultured in a cell incubator with 5% CO 2 /95% air.
- each conjugate For each conjugate, prepare A1-A7 solutions, and each A1-A7 solution contains 3 ⁇ l of the conjugate working solution of the above 7 concentrations and 50 ⁇ l of Opti-MEM medium.
- solution B was prepared separately, and each solution B contained 1 ⁇ l Lipofectamine TM 2000 and 50 ⁇ l Opti-MEM medium.
- transfection complex X1-X7 For each conjugate, one part B solution and one part A1-A7 solution were mixed in sequence, and incubated at room temperature for 20 minutes to obtain transfection complex X1-X7. Each transfection complex configures 2 copies.
- transfection complex X8 4 copies of the transfection complex were prepared.
- transfection complex X1-X7 corresponding to each conjugate, mix them evenly, and add 100 ⁇ l/well to obtain the final concentration of each conjugate (calculated as siRNA)
- the transfection mixtures were 100nM, 25nM, 6.25nM, 1.56nM, 0.391nM, 0.098nM and 0.024nM respectively.
- Two transfection complexes X1-X7 of the same concentration were added to two different culture wells to obtain a transfection mixture containing the conjugate, which was recorded as test group 1-7.
- transfection complex X8 was added respectively, and the addition amount was 100 ⁇ l/well to obtain a transfection mixture without conjugate, which was recorded as a control group.
- each well is supplemented with 1 ml of H-DMEM complete medium containing 20% FBS. Place the 24-well plate in a cell incubator containing 5% CO 2 /95% air to continue culturing the cells for 24 hours.
- RNAVzol purchased from Wiglas Biotechnology (Beijing) Co., Ltd., catalog number N002
- RNA For each well of cells, take 1 ⁇ g of total RNA as the template for reverse transcription, and use the reagents provided by the reverse transcription kit Goldenstar TM RT6 cDNA Synthesis Kit (purchased from Beijing Kinco Xinye Biotechnology Co., Ltd., catalog number TSK301M), which is selected Goldenstar TM Oligo(dT) 17 is used as a primer, and 20 ⁇ l of a reverse transcription reaction system is configured according to the reverse transcription operation steps in the kit instructions to perform reverse transcription on the total RNA of each well.
- the conditions for reverse transcription are: incubate the reverse transcription reaction system at 50°C for 50 minutes, then incubate at 85°C for 5 minutes, and finally incubate at 4°C for 30 seconds. After the reaction, add 80 ⁇ l of DEPC water to the reverse transcription reaction system to obtain cDNA The solution.
- the amplification procedure is 95°C pre-denaturation for 10 minutes, then 95°C denaturation for 30s, 60°C annealing for 30s, 72°C extension for 30s, repeat After a total of 40 times of the above denaturation, annealing and extension processes, a product W containing the amplified target gene C5 and the internal reference gene GAPDH is obtained.
- the product W was incubated at 95°C for 15s, 60°C for 1min, and 95°C for 15s.
- the real-time fluorescent quantitative PCR instrument collected the melting curves of the target gene C5 and the internal reference gene GAPDH in the product W to obtain the Ct of the target gene C5 and the internal reference gene GAPDH. value.
- ⁇ Ct (test group) Ct (test group target gene)-Ct (test group internal reference gene)
- ⁇ Ct (control group) Ct (control group target gene)-Ct (control group internal reference gene)
- ⁇ Ct (test group) ⁇ Ct (test group)- ⁇ Ct (average value of control group)
- ⁇ Ct (control group) ⁇ Ct (control group)- ⁇ Ct (control group average)
- ⁇ Ct control group average
- ⁇ Ct control group average
- control group normalize the C5mRNA expression level of the test group to define the C5mRNA expression level of the control group as 100%.
- the relative expression level of C5 mRNA in the test group 2 ⁇ (- ⁇ Ct (test group)) ⁇ 100%.
- Y is the relative expression level of C5mRNA in the test group
- X is the logarithm of the final concentration of the siRNA conjugate
- Bot is the Y value at the bottom of the steady-state period
- Top is the Y value at the top of the steady-state period
- X' is the corresponding X value when Y is halfway from the bottom to the top
- HillSlope is the slope of the curve at X', which is defined as -1 here.
- siRNA conjugate provided in the present disclosure has a higher inhibitory activity in HepG2 liver cancer cells in vitro, with an IC 50 between 1.494-9.688 nM.
- C57 mice Select 10 6-7 weeks old C57BL/6J female mice (purchased from Beijing Weitong Lihua Experimental Animal Technology Co., Ltd., referred to as C57 mice), and randomly group them into groups of 2 mice, each injected subcutaneously with 1 ⁇ PBS And the above-prepared Cy5-siRNA 1, Cy5-conjugate 1, Cy5-siRNA 2 or Cy5-conjugate 2 solution, all animals calculate the dosage based on body weight, the dosage volume is 5ml/kg body weight, and siRNA The dosage of each animal is 3mg/kg body weight.
- mice of each group were placed in the small animal in vivo optical imaging system IVIS Lumina Series III, the mice were anesthetized with isoflurane gas, and the anesthetized mice were placed with the abdomen facing up Perform in vivo imaging in a small animal in vivo optical imaging system, dynamically detect Cy5 fluorescent signal, and track the distribution of Cy5 labeled siRNA or Cy5 labeled conjugate in living animals. Only the mice administered with Cy5 labeled conjugate had significantly enhanced fluorescence signal in the liver area, while the mice administered with Cy5 labeled siRNA or 1 ⁇ PBS did not have any fluorescence signal in the liver area.
- mice After 48 hours, all the mice were sacrificed, and the five organs of the heart, lung, liver, spleen, and kidney of each mouse were taken out, and fluorescence imaging was performed in IVIS Lumina Series III.
- One animal is selected from each group of mice, and the above 5 organs are arranged longitudinally in turn, and the organs of the mice given 1 ⁇ PBS, Cy5-siRNA 1 or Cy5-conjugate 1 are placed under the same field of view
- Figure 2A the organs of the mice administered with 1 ⁇ PBS, Cy5-siRNA 2 or Cy5-conjugate 2 are photographed under the same field of view, and the results are shown in Figure 2B.
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Abstract
Description
原料 | 用量 | 规格 | 批号 | 生产厂家 |
CapA | 1980ml | —— | —— | —— |
CapB | 220ml | —— | —— | —— |
DMAP | 1.100g | 分析纯 | I1422139 | Aladdin |
乙腈 | 220ml | 光谱纯 | O15161001 | 上海星可 |
缀合物 | 编号 | IC 50 | R 2 |
缀合物1 | L10-siC5a1M1SP | 9.688nM | 0.9513 |
缀合物2 | L10-siC5b1M1SP | 9.566nM | 0.9609 |
缀合物3 | L10-siC5c1M1SP | 2.861nM | 0.9958 |
缀合物4 | L10-siC5d1M1SP | 1.494nM | 0.9418 |
缀合物5 | L10-siC5e1M1SP | 4.077nM | 0.9942 |
缀合物6 | L10-siC5f1M1SP | 3.795nM | 0.9817 |
缀合物7 | L10-siC5c1M1S | 3.023nM | 0.9975 |
缀合物8 | L10-siC5d1M1S | 1.629nM | 0.9961 |
Claims (58)
- 一种siRNA缀合物,其中,所述缀合物具有式(308)所示的结构:其中,n1为选自1-3的整数,n3为选自0-4的整数;每个m1、m2或m3各自独立地为选自2-10的整数;R 10、R 11、R 12、R 13、R 14或R 15各自独立地为H,或选自由以下基团所组成的组:C 1-C 10烷基、C 1-C 10卤代烷基以及C 1-C 10烷氧基;R 3为式A59所示结构的基团:其中,E 1为OH、SH或BH 2,Nu为siRNA,所述siRNA含有正义链和反义链,所述siRNA中的每个核苷酸各自独立地为修饰或未修饰的核苷酸,其中,所述正义链含有一段核苷酸序列I,所述反义链含有一段核苷酸序列II,所述核苷酸序列I和所述核苷酸序列II至少部分地反向互补形成双链区,所述核苷酸序列I和所述核苷酸序列II选自如下i)-vi)所示序列中的一组:i)所述核苷酸序列I与SEQ ID NO:1所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:2所示的核苷酸序列长度相等,且不多于3个核苷酸差异:5'-CUUCAUUCAUACAGACAAZ 1-3'(SEQ ID NO:1);5'-Z 2UUGUCUGUAUGAAUGAAG-3'(SEQ ID NO:2),其中,Z 1为A,Z 2为U,所述核苷酸序列I中包含位置对应于Z 1的核苷酸Z 3,所述核苷酸序列II中包含位置对应于Z 2的核苷酸Z 4,所述Z 4是所述反义链5'末端的第一个核苷酸;ii)所述核苷酸序列I与SEQ ID NO:61所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:62所示的核苷酸序列长度相等,且不多于3个核苷酸差异:5'-CUACAGUUUAGAAGAUUUZ 5-3'(SEQ ID NO:61);5'-Z 6AAAUCUUCUAAACUGUAG-3'(SEQ ID NO:62),其中,Z 5为A,Z 6为U,所述核苷酸序列I中包含位置对应于Z 5的核苷酸Z 7,所述核苷酸序列II中包含位置对应于Z 6的核苷酸Z 8,所述Z 8是所述反义链5'末端的第一个核苷酸;iii)所述核苷酸序列I与SEQ ID NO:121所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:122所示的核苷酸序列长度相等,且不多于3个核苷酸差异:5'-GGAAGGUUACCGAGCAAUZ 9-3'(SEQ ID NO:121);5'-Z 10AUUGCUCGGUAACCUUCC-3'(SEQ ID NO:122),其中,Z 9为A,Z 10为U,所述核苷酸序列I中包含位置对应于Z 9的核苷酸Z 11,所述核苷酸序列II中包含位置对应于Z 10的核苷酸Z 12,所述Z 12是所述反义链5'末端的第一个核苷酸;iv)所述核苷酸序列I与SEQ ID NO:181所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:182所示的核苷酸序列长度相等,且不多于3个核苷酸差异:5'-AGAACAGACAGCAGAAUUZ 13-3'(SEQ ID NO:181);5'-Z 14AAUUCUGCUGUCUGUUCU-3'(SEQ ID NO:182),其中,Z 13为A,Z 14为U,所述核苷酸序列I中包含位置对应于Z 13的核苷酸Z 15,所述核苷酸序列II中包含位置对应于Z 14的核苷酸Z 16,所述Z 16是所述反义链5'末端的第一个核苷酸;v)所述核苷酸序列I与SEQ ID NO:241所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:242所示的核苷酸序列长度相等,且不多于3个核苷酸差异:5'-CCAAGAAGAACGCUGCAAZ 17-3'(SEQ ID NO:241);5'-Z 18UUGCAGCGUUCUUCUUGG-3'(SEQ ID NO:242),其中,Z 17为A,Z 18为U,所述核苷酸序列I中包含位置对应于Z 17的核苷酸Z 19,所述核苷酸序列II中包含位置对应于Z 18的核苷酸Z 20,所述Z 20是所述反义链5'末端的第一个核苷酸;并且vi)所述核苷酸序列I与SEQ ID NO:301所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:302所示的核苷酸序列长度相等,且不多于3个核苷酸差异:5'-CCAGUAAGCAAGCCAGAAZ 21-3'(SEQ ID NO:301);5'-Z 22UUCUGGCUUGCUUACUGG-3'(SEQ ID NO:302),其中,Z 21为A,Z 22为U,所述核苷酸序列I中包含位置对应于Z 21的核苷酸Z 23,所述核苷酸序列II中包含位置对应于Z 22的核苷酸Z 24,所述Z 24是所述反义链5'末端的第一个核苷酸;R 2是长度为1-20个碳原子的直链亚烷基,其中一个或多个碳原子任选地被选自以下基团所组成的组中的任何一个或多个所替换:C(O)、NH、O、S、CH=N、S(O) 2、C 2-C 10亚烯基、C 2-C 10亚炔基、C 6-C 10亚芳基、C 3-C 18亚杂环基和C 5-C 10亚杂芳基;并且其中R 2可任选地具有由以下基团所组成的组中的任何一个或多个的取代基:C 1-C 10烷基、C 6-C 10芳基、C 5-C 10杂芳基、C 1-C 10卤代烷基、-OC 1-C 10烷基、-OC 1-C 10烷基苯基、-C 1-C 10烷基-OH、-OC 1-C 10卤代烷基、-SC 1-C 10烷基、-SC 1-C 10烷基苯基、-C 1-C 10烷基-SH、-SC 1-C 10卤代烷基、卤素取代基、-OH、-SH、-NH 2、-C 1-C 10烷基-NH 2、-N(C 1-C 10烷基)(C 1-C 10烷基)、-NH(C 1-C 10烷基)、-N(C 1-C 10烷基)(C 1-C 10烷基苯基)、-NH(C 1-C 10 烷基苯基)、氰基、硝基、-CO 2H、-C(O)O(C 1-C 10烷基)、-CON(C 1-C 10烷基)(C 1-C 10烷基)、-CONH(C 1-C 10烷基)、-CONH 2、-NHC(O)(C 1-C 10烷基)、-NHC(O)(苯基)、-N(C 1-C 10烷基)C(O)(C 1-C 10烷基)、-N(C 1-C 10烷基)C(O)(苯基)、-C(O)C 1-C 10烷基、-C(O)C 1-C 10烷基苯基、-C(O)C 1-C 10卤代烷基、-OC(O)C 1-C 10烷基、-SO 2(C 1-C 10烷基)、-SO 2(苯基)、-SO 2(C 1-C 10卤代烷基)、-SO 2NH 2、-SO 2NH(C 1-C 10烷基)、-SO 2NH(苯基)、-NHSO 2(C 1-C 10烷基)、-NHSO 2(苯基)和-NHSO 2(C 1-C 10卤代烷基);每个L 1独立地是长度为1-70个碳原子的直链亚烷基,其中一个或多个碳原子任选地被选自以下基团所组成的组中的任何一个或多个所替换:C(O)、NH、O、S、CH=N、S(O) 2、C 2-C 10亚烯基、C 2-C 10亚炔基、C 6-C 10亚芳基、C 3-C 18亚杂环基和C 5-C 10亚杂芳基;并且其中,L 1可任选地具有由以下基团所组成的组中的任何一个或多个的取代基:C 1-C 10烷基、C 6-C 10芳基、C 5-C 10杂芳基、C 1-C 10卤代烷基、-OC 1-C 10烷基、-OC 1-C 10烷基苯基、-C 1-C 10烷基-OH、-OC 1-C 10卤代烷基、-SC 1-C 10烷基、-SC 1-C 10烷基苯基、-C 1-C 10烷基-SH、-SC 1-C 10卤代烷基、卤素取代基、-OH、-SH、-NH 2、-C 1-C 10烷基-NH 2、-N(C 1-C 10烷基)(C 1-C 10烷基)、-NH(C 1-C 10烷基)、-N(C 1-C 10烷基)(C 1-C 10烷基苯基)、-NH(C 1-C 10烷基苯基)、氰基、硝基、-CO 2H、-C(O)O(C 1-C 10烷基)、-CON(C 1-C 10烷基)(C 1-C 10烷基)、-CONH(C 1-C 10烷基)、-CONH 2、-NHC(O)(C 1-C 10烷基)、-NHC(O)(苯基)、-N(C 1-C 10烷基)C(O)(C 1-C 10烷基)、-N(C 1-C 10烷基)C(O)(苯基)、-C(O)C 1-C 10烷基、-C(O)C 1-C 10烷基苯基、-C(O)C 1-C 10卤代烷基、-OC(O)C 1-C 10烷基、-SO 2(C 1-C 10烷基)、-SO 2(苯基)、-SO 2(C 1-C 10卤代烷基)、-SO 2NH 2、-SO 2NH(C 1-C 10烷基)、-SO 2NH(苯基)、-NHSO 2(C 1-C 10烷基)、-NHSO 2(苯基)和-NHSO 2(C 1-C 10卤代烷基);
- 如权利要求1所述的siRNA缀合物,其中,每个L 1独立地选自由(A1)-(A26)基团及其任意连接组合所组成的组:其中,每个j1独立地为1-20的整数;每个j2独立地为1-20的整数;每个R'独立地为C 1-C 10烷基;每个Ra选自由式(A27)-(A45)所示的基团或其任意连接组合所组成的组:每个Rb独立地为C 1-C 10烷基;或者L 1选自A1、A4、A5、A6、A8、A10、A11、A13中的一种或多种的连接组合;或者L 1选自A1、A4、A8、A10和A11中至少2个的连接组合;或者,L 1选自A1、A8、A10中至少2个的连接组合;或者,L 1的长度为3-25个原子;或者,L 1的长度为4-15个原子;
- 如权利要求2所述的siRNA缀合物,其中,j1为2-10的整数,j2为2-10的整数,R'为C 1-C 4烷基,Ra为A27、A28、A29、A30和A31中的一种,Rb为C 1-C 5烷 基;或者j1为3-5的整数,j2为3-5的整数,R'为甲基、乙基和异丙基中的一种,Ra为式(A27)所示的基团或式(A28)所示的基团,Rb为甲基、乙基、异丙基和丁基中的一种。
- 如权利要求1-3中任一项所述的siRNA缀合物,其中,n1为1-2的整数,n3为0-1的整数,且n1+n3=2-3。
- 如权利要求1-4中任一项所述的siRNA缀合物,其中,每个m1、m2或m3各自独立地为2-5的整数,和/或m1=m2=m3。
- 如权利要求1-5中任一项所述的siRNA缀合物,其中,每个所述靶向基团独立地为与哺乳动物肝细胞表面的去唾液酸糖蛋白受体具有亲和力的配体;或者,每个所述靶向基团独立地为去唾液酸糖蛋白或糖;或者,每个所述靶向基团独立地选自D-吡喃甘露糖、L-吡喃甘露糖、D-阿拉伯糖、D-呋喃木糖、L-呋喃木糖、D-葡萄糖、L-葡萄糖、D-半乳糖、L-半乳糖、α-D-呋喃甘露糖、β-D-呋喃甘露糖、α-D-吡喃甘露糖、β-D-吡喃甘露糖、α-D-吡喃葡萄糖、β-D-吡喃葡萄糖、α-D-呋喃葡萄糖、β-D-呋喃葡萄糖、α-D-呋喃果糖、α-D-吡喃果糖、α-D-吡喃半乳糖、β-D-吡喃半乳糖、α-D-呋喃半乳糖、β-D-呋喃半乳糖、葡糖胺、唾液酸、半乳糖胺、N-乙酰半乳糖胺、N-三氟乙酰半乳糖胺、N-丙酰半乳糖胺、N-正丁酰半乳糖胺、N-异丁酰半乳糖胺、2-氨基-3-O-[(R)-1-羧乙基]-2-脱氧-β-D-吡喃葡萄糖、2-脱氧-2-甲基氨基-L-吡喃葡萄糖、4,6-二脱氧-4-甲酰胺基-2,3-二-O-甲基-D-吡喃甘露糖、2-脱氧-2-磺氨基-D-吡喃葡萄糖、N-乙醇酰基-α-神经氨酸、5-硫代-β-D-吡喃葡萄糖、2,3,4-三-O-乙酰基-1-硫代-6-O-三苯甲基-α-D-吡喃葡萄糖苷甲酯、4-硫代-β-D-吡喃半乳糖、3,4,6,7-四-O-乙酰基-2-脱氧-1,5-二硫代-α-D-吡喃葡庚糖苷乙酯、2,5-脱水-D-阿洛糖腈、核糖、D-核糖、D-4-硫代核糖、L-核糖、L-4-硫代核糖中的一种;或者,至少一个或每个所述靶向基团为半乳糖或N-乙酰半乳糖胺。
- 如权利要求1-6中任一项所述的siRNA缀合物,其中,R 10、R 11、R 12、R 13、R 14或R 15各自独立地为H、甲基或乙基;或者R 10、R 11、R 12、R 13、R 14或R 15均为H。
- 如权利要求1-7中任一项所述的siRNA缀合物,其中,R 2上同时含有与含氮骨架上的N连接的连接位点和与R 3中的P原子连接的连接位点;或者R 2上所述与含氮骨架上的N连接的位点与N形成酰胺键,所述与R 3中的P原子连接的位点与P形成磷酸酯键;或者R 2选自式(B5)、(B6)、(B5')或(B6')所示的基团。
- 如权利要求1-8中任一项所述的siRNA缀合物,其中,该缀合物具有式(403)、(404)、(405)、(406)、(407)、(408)、(409)、(410)、(411)、(412)、(413)、(414)、(415)、(416)、(417)、(418)、(419)、(420)、(421)或(422)所示的结构。
- 如权利要求1-9中任一项所述的siRNA缀合物,其中,式A59中的P原子连接到siRNA正义链或反义链的端部,所述端部指所述正义链或反义链中从其一端起算的前4个核苷酸;或者式A59中的P原子连接到所述siRNA正义链或反义链的末端;或者式A59中的P原子连接到所述siRNA正义链的3'末端;或者式A59中的P原子通过磷酸二酯键连接至所述siRNA中的核苷酸的2'位、3'位或5'位。
- 如权利要求1所述的siRNA缀合物,其中,i)所述核苷酸序列I与SEQ ID NO:1所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:2所示的核苷酸序列之间不多于1个核苷酸差异;或者ii),所述核苷酸序列I与SEQ ID NO:61所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:62所示的核苷酸序列之间不多于1个核苷酸差异;或者,iii)所述核苷酸序列I与SEQ ID NO:121所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:122所示的核苷酸序列之间不多于1个核苷酸差异;或者,iv)所述核苷酸序列I与SEQ ID NO:181所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:182所示的核苷酸序列之间不多于1个核苷酸差异;或者,v)所述核苷酸序列I与SEQ ID NO:241所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:242所示的核苷酸序列之间不多于1个核苷酸差异;或者vi)所述核苷酸序列I与SEQ ID NO:301所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:302所示的核苷酸序列之间不多于1个核苷酸差异。
- 如权利要求1或11所述的siRNA缀合物,其中,i)所述核苷酸序列II与SEQ ID NO:2所示的核苷酸序列之间的核苷酸差异包括Z 4位置处的差异,且Z 4选自A、C或G;或者ii)所述核苷酸序列II与SEQ ID NO:62所示的核苷酸序列之间的核苷酸差异包括Z 8位置处的差异,且Z 8选自A、C或G;或者iii)所述核苷酸序列II与SEQ ID NO:122所示的核苷酸序列之间的核苷酸差异包括Z 12位置处的差异,且Z 12选自A、C或G;或者iv)所述核苷酸序列II与SEQ ID NO:182所示的核苷酸序列之间的核苷酸差异包括Z 16位置处的差异,且Z 16选自A、C或G;或者v)所述核苷酸序列II与SEQ ID NO:242所示的核苷酸序列之间的核苷酸差异包括Z 20位置处的差异,且Z 20选自A、C或G;或者vi)所述核苷酸序列II与SEQ ID NO:302所示的核苷酸序列之间的核苷酸差异包括Z 24位置处的差异,且Z 24选自A、C或G。
- 如权利要求12所述的siRNA缀合物,其中,其中Z 3是与Z 4互补的核苷酸;或者Z 7是与Z 8互补的核苷酸;或者Z 11是与Z 12互补的核苷酸;或者Z 15是与Z 16互补的核苷酸;或者Z 19是与Z 20互补的核苷酸;或者Z 23是与Z 24互补的核苷酸。
- 如权利要求1-13中任意一项所述的siRNA缀合物,其中,所述核苷酸序列I和所述核苷酸序列II基本上反向互补、实质上反向互补或完全反向互补;所述基本上反向互补是指两个核苷酸序列之间存在不多于3个的碱基错配;所述实质上反向互补是指两个核苷酸序列之间存在不多于1个的碱基错配;所述完全反向互补是指两个核苷酸序列之间没有错配。
- 如权利要求11-14中任意一项所述的siRNA缀合物,其中,所述正义链还含有核苷酸序列III,所述反义链还含有核苷酸序列IV,核苷酸序列III和核苷酸序列IV的长度各自独立地为1-4个核苷酸,所述核苷酸序列III连接在核苷酸序列I的5'末端,核苷酸序列IV连接在核苷酸序列II的3'末端,所述核苷酸序列III和所述核苷酸序列IV长度相等并且实质上反向互补或完全反向互补;所述实质上反向互补是指两个核苷酸序列之间存在不多于1个的碱基错配;所述完全反向互补是指两个核苷酸序列之间 没有错配。
- 如权利要求15所述的siRNA缀合物,其中,i)所述核苷酸序列I为SEQ ID NO:3所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:4所示的核苷酸序列;且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为U;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CU;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UCU;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UUCU;或者ii)所述核苷酸序列I为SEQ ID NO:63所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:64所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为A;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UA;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AUA;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CAUA;或者iii)所述核苷酸序列I为SEQ ID NO:123所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:124所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为G;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AG;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CAG;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CCAG;或者iv)所述核苷酸序列I为SEQ ID NO:183所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:184所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为G;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GG;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AGG;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CAGG;或者v)所述核苷酸序列I为SEQ ID NO:243所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:244所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为G;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GG;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AGG;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CAGG;或者vi)所述核苷酸序列I为SEQ ID NO:303所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:304所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为A;或者,所述核苷酸序列III和IV的长度均 为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UA;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UUA;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GUUA。
- 如权利要求16所述的siRNA缀合物,其中所述核苷酸序列III和IV完全反向互补。
- 如权利要求1-17中任意一项所述的siRNA缀合物,其中,所述反义链还含有核苷酸序列V,核苷酸序列V的长度为1至3个核苷酸,连接在所述反义链的3'末端,构成反义链的3'垂悬末端;或者所述核苷酸序列V的长度为2个核苷酸;或者所述核苷酸序列V为连续的两个胸腺嘧啶脱氧核糖核苷酸或连续的两个尿嘧啶核糖核苷酸;或者所述核苷酸序列V与靶mRNA相应位置的核苷酸互补。
- 如权利要求1-18中任意一项所述的siRNA缀合物,其中,所述siRNA的正义链含有如SEQ ID NO:5所示的核苷酸序列,所述反义链含有如SEQ ID NO:6所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:7所示的核苷酸序列,所述反义链含有如SEQ ID NO:8所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:65所示的核苷酸序列,所述反义链含有如SEQ ID NO:66所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:67所示的核苷酸序列,所述反义链含有如SEQ ID NO:68所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:125所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:126所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:127所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:128所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:185所示的核苷酸序列,所述反义链含有如SEQ ID NO:186所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:187所示的核苷酸序列,所述反义链含有如SEQ ID NO:188所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:245所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:246所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:247所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:248所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:305所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:306所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:307所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:308所示的核苷酸序列。
- 如权利要求11-19中任意一项所述的siRNA缀合物,其中,所述siRNA具有siC5a1、siC5a2、siC5b1、siC5b2、siC5c1、siC5c2、siC5d1、siC5d2、siC5e1、siC5e2、siC5f1或siC5f2所示的核苷酸序列。
- 如权利要求1-20中任意一项所述的siRNA缀合物,其中,所述正义链或所述反义链中的至少一个核苷酸为修饰的核苷酸,和/或至少一个磷酸酯基为具有修饰基团的磷酸酯基。
- 如权利要求21所述的siRNA缀合物,其中,所述正义链和所述反义链中的每 一个核苷酸独立地为氟代修饰的核苷酸或非氟代修饰的核苷酸;或者所述氟代修饰的核苷酸位于核苷酸序列I和核苷酸序列II中,并且,按照5'末端到3'末端的方向,所述核苷酸序列I中至少第7、8、9位的核苷酸为氟代修饰的核苷酸;按照5'末端到3'末端的方向,所述核苷酸序列II中至少第2、6、14、16位的核苷酸为氟代修饰的核苷酸;或者按照5'末端到3'末端的方向,在所述正义链中,所述核苷酸序列I的第7、8、9位或者5、7、8、9位的核苷酸为氟代修饰的核苷酸,所述正义链中其余位置的核苷酸为非氟代修饰的核苷酸;按照5'末端到3'末端的方向,在所述反义链中,所述核苷酸序列II的第2、6、14、16位或者2、6、8、9、14、16位的核苷酸为氟代修饰的核苷酸,所述反义链中其余位置的核苷酸为非氟代修饰的核苷酸。
- 如权利要求21或22所述的siRNA缀合物,其中,每一个非氟代修饰的核苷酸独立地选自核苷酸的核糖基2'位的羟基被非氟基团取代形成的核苷酸或核苷酸类似物中的一种;或者核苷酸的核糖基2'位的羟基被非氟基团取代形成的核苷酸选自2'-烷氧基修饰的核苷酸、2'-经取代的烷氧基修饰的核苷酸、2'-烷基修饰的核苷酸、2'-经取代的烷基修饰的核苷酸、2'-氨基修饰的核苷酸、2'-经取代的氨基修饰的核苷酸、2'-脱氧核苷酸中的一种;核苷酸类似物选自异核苷酸、LNA、ENA、cET、UNA和GNA中的一种;或者每一个非氟代修饰的核苷酸均为甲氧基修饰的核苷酸,所述甲氧基修饰的核苷酸指核糖基的2'-羟基被甲氧基取代而形成的核苷酸。
- 如权利要求21-23中任意一项所述的siRNA缀合物,其中,按照5'末端到3'末端的方向,所述siRNA的正义链中核苷酸序列I的第5、7、8和9位的核苷酸为氟代修饰的核苷酸,siRNA的正义链的其余位置的核苷酸为甲氧基修饰的核苷酸,并且,按照5'末端到3'末端的方向,所述siRNA的反义链中核苷酸序列II的第2、6、8、9、14和16位的核苷酸为氟代修饰的核苷酸,siRNA的反义链其余位置的核苷酸为甲氧基修饰的核苷酸;或者,按照5'末端到3'末端的方向,所述siRNA的正义链中核苷酸序列I的第5、7、8和9位的核苷酸为氟代修饰的核苷酸,siRNA的正义链的其余位置的核苷酸为甲氧基修饰的核苷酸,并且,按照5'末端到3'末端的方向,所述siRNA的反义链中核苷酸序列II的第2、6、14和16位的核苷酸为氟代修饰的核苷酸,siRNA的反义链其余位置的核苷酸为甲氧基修饰的核苷酸;或者,按照5'末端到3'末端的方向,所述siRNA的正义链中核苷酸序列I的第7、8和9位的核苷酸为氟代修饰的核苷酸,siRNA的正义链的其余位置的核苷酸为甲氧基修饰的核苷酸,并且,按照5'末端到3'末端的方向,所述siRNA的反义链中核苷酸序列II的第2、6、14和16位的核苷酸为氟代修饰的核苷酸,siRNA的反义链其余位置的核苷酸为甲氧基修饰的核苷酸。
- 如权利要求1-24中任意一项所述的siRNA缀合物,其中,所述siRNA为siC5a1-M1、siC5a2-M1、siC5a1-M2、siC5a2-M2、siC5a1-M3、siC5a2-M3、siC5b1-M1、siC5b2-M1、siC5b1-M2、siC5b2-M2、siC5b1-M3、siC5b2-M3、siC5c1-M1、siC5c2-M1、siC5c1-M2、siC5c2-M2、siC5c1-M3、siC5c2-M3、siC5d1-M1、siC5d2-M1、siC5d1-M2、siC5d2-M2、siC5d1-M3、siC5d2-M3、siC5e1-M1、siC5e2-M1、siC5e1-M2、siC5e2-M2、 siC5e1-M3、siC5e2-M3、siC5f1-M1、siC5f2-M1、siC5f1-M2、siC5f2-M2、siC5f1-M3或siC5f2-M3中的任意一种。
- 如权利要求26所述的siRNA缀合物,其中,所述siRNA中,硫代磷酸酯基连接存在于由以下位置组成的组中的至少一处:所述正义链的5'末端第1个核苷酸和第2个核苷酸之间;所述正义链的5'末端第2个核苷酸和第3个核苷酸之间;所述正义链的3'末端第1个核苷酸和第2个核苷酸之间;所述正义链的3'末端第2个核苷酸和第3个核苷酸之间;所述反义链的5'末端第1个核苷酸和第2个核苷酸之间;所述反义链的5'末端第2个核苷酸和第3个核苷酸之间;所述反义链的3'末端第1个核苷酸和第2个核苷酸之间;以及所述反义链的3'末端第2个核苷酸和第3个核苷酸之间。
- 如权利要求1-27中任意一项所述的siRNA缀合物,其中,所述siRNA为siC5a1-M1S、siC5a2-M1S、siC5a1-M2S、siC5a2-M2S、siC5a1-M3S、siC5a2-M3S、siC5b1-M1S、siC5b2-M1S、siC5b1-M2S、siC5b2-M2S、siC5b1-M3S、siC5b2-M3S、siC5c1-M1S、siC5c2-M1S、siC5c1-M2S、siC5c2-M2S、siC5c1-M3S、siC5c2-M3S、siC5d1-M1S、siC5d2-M1S、siC5d1-M2S、siC5d2-M2S、siC5d1-M3S、siC5d2-M3S、siC5e1-M1S、siC5e2-M1S、siC5e1-M2S、siC5e2-M2S、siC5e1-M3S、siC5e2-M3S、siC5f1-M1S、siC5f2-M1S、siC5f1-M2S、siC5f2-M2S、siC5f1-M3S或siC5f2-M3S中的任意一种。
- 如权利要求1-29中任意一项所述的siRNA缀合物,其中,所述siRNA为siC5a1-M1P1、siC5a1-M2P1、siC5a1-M3P1、siC5a2-M1P1、siC5a2-M2P1、siC5a2-M3P1、 siC5a1-M1SP1、siC5a1-M2SP1、siC5a1-M3SP1、siC5a2-M1SP1、siC5a2-M2SP1、siC5a2-M3SP1、siC5b1-M1P1、siC5b1-M2P1、siC5b1-M3P1、siC5b2-M1P1、siC5b2-M2P1、siC5b2-M3P1、siC5b1-M1SP1、siC5b1-M2SP1、siC5b1-M3SP1、siC5b2-M1SP1、siC5b2-M2SP1、siC5b2-M3SP1、siC5c1-M1P1、siC5c1-M2P1、siC5c1-M3P1、siC5c2-M1P1、siC5c2-M2P1、siC5c2-M3P1、siC5c1-M1SP1、siC5c1-M2SP1、siC5c1-M3SP1、siC5c2-M1SP1、siC5c2-M2SP1、siC5c2-M3SP1、siC5d1-M1P1、siC5d1-M2P1、siC5d1-M3P1、siC5d2-M1P1、siC5d2-M2P1、siC5d2-M3P1、siC5d1-M1SP1、siC5d1-M2SP1、siC5d1-M3SP1、siC5d2-M1SP1、siC5d2-M2SP1、siC5d2-M3SP1、siC5e1-M1P1、siC5e1-M2P1、siC5e1-M3P1、siC5e2-M1P1、siC5e2-M2P1、siC5e2-M3P1、siC5e1-M1SP1、siC5e1-M2SP1、siC5e1-M3SP1、siC5e2-M1SP1、siC5e2-M2SP1、siC5e2-M3SP1、siC5f1-M1P1、siC5f1-M2P1、siC5f1-M3P1、siC5f2-M1P1、siC5f2-M2P1、siC5f2-M3P1、siC5f1-M1SP1、siC5f1-M2SP1、siC5f1-M3SP1、siC5f2-M1SP1、siC5f2-M2SP1或siC5f2-M3SP1中的任意一种。
- 一种siRNA,所述siRNA含有正义链和反义链,所述正义链和所述反义链中的每一个核苷酸独立地为氟代修饰的核苷酸或非氟代修饰的核苷酸;所述正义链含有一段核苷酸序列I,所述反义链含有一段核苷酸序列II,所述核苷酸序列I和所述核苷酸序列II至少部分地反向互补形成双链区,所述氟代修饰的核苷酸位于核苷酸序列I和核苷酸序列II中,并且,按照5'末端到3'末端的方向,在所述正义链中,所述核苷酸序列I的第7、8、9位的核苷酸为氟代修饰的核苷酸,所述正义链中其余位置的核苷酸为非氟代修饰的核苷酸;按照5'末端到3'末端的方向,在所述反义链中,所述核苷酸序列II的第2、6、14、16位的核苷酸为氟代修饰的核苷酸,所述反义链中其余位置的核苷酸为非氟代修饰的核苷酸,并且,i)所述核苷酸序列I与SEQ ID NO:1所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:2所示的核苷酸序列长度相等,且不多于3个核苷酸差异,所述核苷酸序列I中包含位置对应于Z 1的核苷酸Z 3,所述核苷酸序列II中包含位置对应于Z 2的核苷酸Z 4,所述Z 4是所述反义链5'末端的第一个核苷酸;或者,ii)所述核苷酸序列I与SEQ ID NO:61所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:62所示的核苷酸序列长度相等,且不多于3个核苷酸差异,所述核苷酸序列I中包含位置对应于Z 5的核苷酸Z 7,所述核苷酸序列II中包含位置对应于Z 6的核苷酸Z 8,所述Z 8是所述反义链5'末端的第一个核苷酸;或者,iii)所述核苷酸序列I与SEQ ID NO:121所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:122所示的核苷酸序列长度相等,且不多于3个核苷酸差异,所述核苷酸序列I中包含位置对应于Z 9的核苷酸Z 11,所述核苷酸序列II中包含位置对应于Z 10的核苷酸Z 12,所述Z 12是所述反义链5'末端的第一个核苷酸;或者,iv)所述核苷酸序列I与SEQ ID NO:181所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:182所示的核苷酸序列长度相等,且不多于3个核苷酸差异,所述核苷酸序列I中包含位置对应于Z 13的核苷酸Z 15,所 述核苷酸序列II中包含位置对应于Z 14的核苷酸Z 16,所述Z 16是所述反义链5'末端的第一个核苷酸;或者,v)所述核苷酸序列I与SEQ ID NO:241所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:242所示的核苷酸序列长度相等,且不多于3个核苷酸差异,所述核苷酸序列I中包含位置对应于Z 17的核苷酸Z 19,所述核苷酸序列II中包含位置对应于Z 18的核苷酸Z 20,所述Z 20是所述反义链5'末端的第一个核苷酸;或者,vi)所述核苷酸序列I与SEQ ID NO:301所示的核苷酸序列长度相等,且不多于3个核苷酸差异,且所述核苷酸序列II与SEQ ID NO:302所示的核苷酸序列长度相等,且不多于3个核苷酸差异,所述核苷酸序列I中包含位置对应于Z 21的核苷酸Z 23,所述核苷酸序列II中包含位置对应于Z 22的核苷酸Z 24,所述Z 24是所述反义链5'末端的第一个核苷酸。
- 如权利要求31所述的siRNA,其中,每一个非氟代修饰的核苷酸独立地选自核苷酸的核糖基2'位的羟基被非氟基团取代形成的核苷酸或核苷酸类似物中的一种。
- 如权利要求32所述的siRNA,其中,核苷酸的核糖基2'位的羟基被非氟基团取代形成的核苷酸选自2'-烷氧基修饰的核苷酸、2'-经取代的烷氧基修饰的核苷酸、2'-烷基修饰的核苷酸、2'-经取代的烷基修饰的核苷酸、2'-氨基修饰的核苷酸、2'-经取代的氨基修饰的核苷酸、2'-脱氧核苷酸中的一种;核苷酸类似物选自异核苷酸、LNA、ENA、cET、UNA和GNA中的一种。
- 如权利要求31-33中任意一项所述的siRNA,其中,每一个非氟代修饰的核苷酸均为甲氧基修饰的核苷酸,所述甲氧基修饰的核苷酸指核糖基的2'-羟基被甲氧基取代而形成的核苷酸。
- 如权利要求31-34中任意一项所述的siRNA,其中,i)所述核苷酸序列I与SEQ ID NO:1所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:2所示的核苷酸序列之间不多于1个核苷酸差异;或者ii),所述核苷酸序列I与SEQ ID NO:61所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:62所示的核苷酸序列之间不多于1个核苷酸差异;或者,iii)所述核苷酸序列I与SEQ ID NO:121所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:122所示的核苷酸序列之间不多于1个核苷酸差异;或者,iv)所述核苷酸序列I与SEQ ID NO:181所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:182所示的核苷酸序列之间不多于1个核苷酸差异;或者,v)所述核苷酸序列I与SEQ ID NO:241所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:242所示的核苷酸序列之间不多于1个核苷酸差异;或者vi)所述核苷酸序列I与SEQ ID NO:301所示的核苷酸序列之间不多于1个核苷酸差异,和/或所述核苷酸序列II与SEQ ID NO:302所示的核苷酸序列之间不多于1个核苷酸差异。
- 如权利要求31-35中任意一项所述的siRNA,其中,i)所述核苷酸序列II与SEQ ID NO:2所示的核苷酸序列之间的核苷酸差异包括Z 4位置处的差异,且Z 4选自A、C或G;或者ii)所述核苷酸序列II与SEQ ID NO:62所示的核苷酸序列之间的核苷酸差异包括Z 8位置处的差异,且Z 8选自A、C或G;或者iii)所述核苷酸序 列II与SEQ ID NO:122所示的核苷酸序列之间的核苷酸差异包括Z 12位置处的差异,且Z 12选自A、C或G;或者iv)所述核苷酸序列II与SEQ ID NO:182所示的核苷酸序列之间的核苷酸差异包括Z 16位置处的差异,且Z 16选自A、C或G;或者v)所述核苷酸序列II与SEQ ID NO:242所示的核苷酸序列之间的核苷酸差异包括Z 20位置处的差异,且Z 20选自A、C或G;或者vi)所述核苷酸序列II与SEQ ID NO:302所示的核苷酸序列之间的核苷酸差异包括Z 24位置处的差异,且Z 24选自A、C或G。
- 如权利要求36所述的siRNA,其中,其中Z 3是与Z 4互补的核苷酸;或者Z 7是与Z 8互补的核苷酸;或者Z 11是与Z 12互补的核苷酸;或者Z 15是与Z 16互补的核苷酸;或者Z 19是与Z 20互补的核苷酸;或者Z 23是与Z 24互补的核苷酸。
- 如权利要求31-37中任意一项所述的siRNA,其中,所述核苷酸序列I和所述核苷酸序列II基本上反向互补、实质上反向互补或完全反向互补;所述基本上反向互补是指两个核苷酸序列之间存在不多于3个的碱基错配;所述实质上反向互补是指两个核苷酸序列之间存在不多于1个的碱基错配;所述完全反向互补是指两个核苷酸序列之间没有错配。
- 如权利要求31-38中任意一项所述的siRNA,其中,所述正义链还含有核苷酸序列III,所述反义链还含有核苷酸序列IV,核苷酸序列III和核苷酸序列IV的长度各自独立地为1-4个核苷酸,所述核苷酸序列III连接在核苷酸序列I的5'末端,核苷酸序列IV连接在核苷酸序列II的3'末端,所述核苷酸序列III和所述核苷酸序列IV长度相等并且实质上反向互补或完全反向互补;所述实质上反向互补是指两个核苷酸序列之间存在不多于1个的碱基错配;所述完全反向互补是指两个核苷酸序列之间没有错配。
- 如权利要求31-39中任意一项所述的siRNA,其中,i)所述核苷酸序列I为SEQ ID NO:3所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:4所示的核苷酸序列;且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为U;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CU;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UCU;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UUCU;或者ii)所述核苷酸序列I为SEQ ID NO:63所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:64所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为A;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UA;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AUA;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CAUA;或者iii)所述核苷酸序列I为SEQ ID NO:123所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:124所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为G;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AG;或者, 所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CAG;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CCAG;或者iv)所述核苷酸序列I为SEQ ID NO:183所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:184所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为G;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GG;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AGG;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CAGG;或者v)所述核苷酸序列I为SEQ ID NO:243所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:244所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为G;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GG;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为AGG;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为CAGG;或者vi)所述核苷酸序列I为SEQ ID NO:303所示的核苷酸序列,所述核苷酸序列II为SEQ ID NO:304所示的核苷酸序列;并且所述核苷酸序列III和IV的长度均为1个核苷酸,所述核苷酸序列III的碱基为A;或者,所述核苷酸序列III和IV的长度均为2个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UA;或者,所述核苷酸序列III和IV的长度均为3个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为UUA;或者,所述核苷酸序列III和IV的长度均为4个核苷酸,按照5'末端到3'末端的方向,核苷酸序列III的碱基组成为GUUA。
- 如权利要求40所述的siRNA,其中所述核苷酸序列III和IV完全反向互补。
- 如权利要求31-41中任意一项所述的siRNA,其中,所述反义链还含有核苷酸序列V,核苷酸序列V的长度为1至3个核苷酸,连接在所述反义链的3'末端,构成反义链的3'垂悬末端;或者所述核苷酸序列V的长度为2个核苷酸;或者所述核苷酸序列V为连续的两个胸腺嘧啶脱氧核糖核苷酸或连续的两个尿嘧啶核糖核苷酸;或者所述核苷酸序列V与靶mRNA相应位置的核苷酸互补。
- 如权利要求31-42中任意一项所述的siRNA,其中,所述siRNA的正义链含有如SEQ ID NO:5所示的核苷酸序列,所述反义链含有如SEQ ID NO:6所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:7所示的核苷酸序列,所述反义链含有如SEQ ID NO:8所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:65所示的核苷酸序列,所述反义链含有如SEQ ID NO:66所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:67所示的核苷酸序列,所述反义链含有如SEQ ID NO:68所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:125所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:126所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:127所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:128 所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:185所示的核苷酸序列,所述反义链含有如SEQ ID NO:186所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:187所示的核苷酸序列,所述反义链含有如SEQ ID NO:188所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:245所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:246所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:247所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:248所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:305所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:306所示的核苷酸序列;或者所述siRNA的正义链含有如SEQ ID NO:307所示的核苷酸序列,所述siRNA的反义链含有如SEQ ID NO:308所示的核苷酸序列。
- 如权利要求31-43中任意一项所述的siRNA,其中,所述siRNA具有siC5a1、siC5a2、siC5b1、siC5b2、siC5c1、siC5c2、siC5d1、siC5d2、siC5e1、siC5e2、siC5f1或siC5f2所示的核苷酸序列。
- 如权利要求31-44中任意一项所述的siRNA,其中,其中,所述siRNA为siC5a1-M1、siC5a2-M1、siC5b1-M1、siC5b2-M1、siC5c1-M1、siC5c2-M1、siC5d1-M1、siC5d2-M1、siC5e1-M1、siC5e2-M1、siC5f1-M1或siC5f2-M1中的任意一种。
- 如权利要求31-45中任意一项所述的siRNA,其中,所述正义链或所述反义链中的至少一个磷酸酯基为具有修饰基团的磷酸酯基。
- 如权利要求47所述的siRNA,其中,所述siRNA中,硫代磷酸酯基连接存在于由以下位置组成的组中的至少一处:所述正义链的5'末端第1个核苷酸和第2个核苷酸之间;所述正义链的5'末端第2个核苷酸和第3个核苷酸之间;所述正义链的3'末端第1个核苷酸和第2个核苷酸之间;所述正义链的3'末端第2个核苷酸和第3个核苷酸之间;所述反义链的5'末端第1个核苷酸和第2个核苷酸之间;所述反义链的5'末端第2个核苷酸和第3个核苷酸之间;所述反义链的3'末端第1个核苷酸和第2个核苷酸之间;以及所述反义链的3'末端第2个核苷酸和第3个核苷酸之间。
- 如权利要求31-48中任意一项所述的siRNA,其中,所述siRNA为siC5a1-M1S、siC5a2-M1S、siC5b1-M1S、siC5b2-M1S、siC5c1-M1S、siC5c2-M1S、siC5d1-M1S、 siC5d2-M1S、siC5e1-M1S、siC5e2-M1S、siC5f1-M1S或siC5f2-M1S中的任意一种。
- 如权利要求31-50中任意一项所述的siRNA,其中,所述siRNA为siC5a1-M1P1、siC5a2-M1P1、siC5a1-M1SP1、siC5a2-M1SP1、siC5b1-M1P1、siC5b2-M1P1、siC5b1-M1SP1、siC5b2-M1SP1、siC5c1-M1P1、siC5c2-M1P1、siC5c1-M1SP1、siC5c2-M1SP1、siC5d1-M1P1、siC5d2-M1P1、siC5d1-M1SP1、siC5d2-M1SP1、siC5e1-M1P1、siC5e2-M1P1、siC5e1-M1SP1、siC5e2-M1SP1、siC5f1-M1P1、siC5f2-M1P1、siC5f1-M1SP1或siC5f2-M1SP1中的任意一种。
- 如权利要求31-51中任意一项所述的siRNA,其中所述siRNA为siC5a1-M1SP、siC5b1-M1SP、siC5c1-M1SP、siC5d1-M1SP、siC5e1-M1SP或siC5f1-M1SP中的任意一种。
- 一种药物组合物,其特征在于,该药物组合物含有权利要求31-52中任意一项所述的siRNA和药学上可接受的载体。
- 一种siRNA缀合物,所述siRNA缀合物含有权利要求31-52中任意一项所述的siRNA以及缀合连接至该siRNA的缀合基团。
- 权利要求1-30以及54中任意一项所述的siRNA缀合物、权利要求31-52中任意一项所述的siRNA和/或权利要求53所述的药物组合物在制备用于治疗和/或预防重症肌无力的药物中的用途。
- 一种治疗和/或预防重症肌无力的方法,其中,所述方法包括将有效量的权利要求1-30以及54中任意一项所述的siRNA缀合物、权利要求31-52中任意一项所述的siRNA和/或权利要求53所述的药物组合物给予患有重症肌无力的受试者。
- 一种抑制肝细胞中C5基因表达的方法,该方法包括将有效量的权利要求1-30以及54中任意一项所述的siRNA缀合物、权利要求31-52中任意一项所述的siRNA和/或权利要求53所述的药物组合物与所述肝细胞接触。
- 一种试剂盒,其中,该试剂盒含有权利要求1-30以及54中任意一项所述的siRNA缀合物、权利要求31-52中任意一项所述的siRNA和/或权利要求53所述的药物组合物。
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US20220186221A1 (en) | 2022-06-16 |
EP3978029A1 (en) | 2022-04-06 |
EP3978029A4 (en) | 2023-07-19 |
AU2020282453A1 (en) | 2021-12-16 |
JP7613751B2 (ja) | 2025-01-15 |
CN113795280A (zh) | 2021-12-14 |
CN113795280B (zh) | 2024-04-05 |
CN118217305A (zh) | 2024-06-21 |
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