NZ511488A - Inhibitors of platelet activation and recruitment comprising an Ala residue and heterologous peptides capable of forming a stable secondary structure attached to a CD39 polypeptide - Google Patents

Abstract

Disclosed are polypeptides having the structure X-Y wherein X is selected from the group consisting of an Ala residue and heterologous peptides capable of adopting a stable secondary structure and Y is a soluble CD39 polypeptide selected from the group consisting of: (a) polypeptides having an amino acid sequence as set forth SEQ ID NO: 2 wherein the amino terminus is selected from the group consisting of amino acids 36-44, and the carboxy terminus is selected from the group consisting of amino acids 471-478; (b) fragments of the polypeptides of (a) wherein said fragments have apyrase activity; and (c) variants of the polypeptides of (a) or (b), wherein said variants have apyrase activity. Such polypeptides are useful for inhibiting platelet activation and recruitment in a mammal in need of such treatment. Also disclosed are nucleic acid sequences coding for such polypeptides, expression vectors comprising such nucleic acid sequences and recombinant host cells comprising such nucleic acid sequences.

Description

511488 WO 00/23459 PCT/US99/22955 TITLE INHIBITORS OF PLATELET ACTIVATION AND RECRUITMENT REFERENCE TO RELATED APPLICATIONS The present application is related.to U.S. Provisional Application Serial Nos. 60/104,585, filed 16 October 1998,60/107,466, filed 06 November 1998, and 60/149,010, filed 13 August 1999.

FIELD OF THE INVENTION This invention relates to soluble CD39 compounds and compositions, the preparation thereof, 10 and the use thereof to inhibit platelet activation and recruitment in a mammal.

BACKGROUND OF THE INVENTION CD39 is a cell-surface antigen that was originally identified as a marker for mature B cells, but is also expressed on less mature B cells, Epstein-Barr Virus-transformed B cells, activated T cells, 15 endothelial cells and some myeloid cell lines (Dorken et al., in Leukocyte Typing IV\ W. Knapp, B. Dorken, and W.R. Gilks, Eds; Oxford University Press, New York, NY; pp. 89-90,1989).

Monoclonal antibodies against CD39 induce B cell homotypic adhesion, an-activity that may be important in the regulation of immune function (Kansas and Tedder, J. Immunol. 147:4094-4102, 1991). Molecular cloning and characterization of CD39 indicated that it is unique cell surface 20 molecule that contains two potential transmembrane regions and a hydrophobic segment within the putative extracellular domain (Maliszewski et al., J. Immunol. 153:3574,1994). The amino acid sequence of CD39 was reported to exhibit some homology with a guanosine diphosphatase from yeast (Maliszewski et al., supra).

In 1996, an ATP diphosphohydrolase was cloned from potato tubers (Handa and Guidotti, 25 Biochem. Biophys. Res. Commun. 218:916,1996). The amino acid sequences of this and several other NTPases demonstrated a high degree of similarity, particularly within several small "apyrase conserved regions" (ACR). CD39 shares these conserved regions with soluble ATP-diphosphorylase from potato tubers, other apyrases and related enzymes. It was subsequently reported that native and recombinant full-length CD39 possess E-type ATP diphosphohydrolase (ATPDase) activity (Marcus 30 et al„ J. Clin.lnvest. 99:1351, 1997); Kaczmarek et al., J. Biol. Chem. 271:33116,1996); Wang and Guidotti, J. Biol. Chem. 271:9898,1996). ATPDases degrade nucleoside tri- and/or diphosphates, but not monophosphates (Plesner, Int. Rev. Cytol. 158:141,1995).

Vascular endothelial cells constituitively express a cell-surface ADPase (ecto-ATP diphosphohydrolase, apyrase, EC 3.6.1.5), one of at least 3 thromboregulatory systems which function 35 in the maintenance of blood fluidity (Marcus and Safier, FASEB J. 7:516, 1983; Marcus et al., J.

Clin. Invest. 88:1690,1991). This ecto-ADPase, which belongs to the E-type ATPDase family, rapidly metabolizes ADP in the platelet releasate, terminating further platelet recruitment and I aggregation. i WO 00/23459 PCT/US99/22955 Immunoprecipitation of HUVEC detergent lysates with anti-CD39 mAb resulted in complete capture of cell-associated ADPase activity, suggesting that CD39 is the only ecto-ADPase on endothelial cells (Marcus et al., J. Clin. Invest. 99:1351, 1997). In the same study, COS cell transfectants expressing recombinant CD39 at the cell surface totally inhibited ADP-induced platelet 5 aggregation. Thus, CD39 plays a prominent role in thromboregulation (see also, Gayle et al., J. Clin. Invest., 101:1851,1998).

Excessive platelet activation (i.e., stimulation by an agonist) and recruitment, leading to platelet aggregation and vessel occlusion at sites of vascular injury in the coronary, carotid, and peripheral arteries, presents a major therapeutic challenge in cardiovascular medicine. Excessive 10 platelet activation and recruitment is a contributing factor in clinical disorders including stroke, unstable angina, myocardial infarction, and restenosis following percutaneous coronary intervention including angioplasty, atherectomy, stent placement, and bypass surgery.

Glycoprotein Ilb/Illa antagonists, such as the monoclonal antibody marketed as ReoPro® (Centocor Inc.), are presently under development for the inhibition of platelet aggregation in patients 15 undergoing percutaneous coronary intervention, and in patients with acute coronary syndromes such as unstable angina and myocardial infarction. The activation of glycoprotein Ub/IIIa receptors, however, is a late event in the cascade that leads to platelet aggregation.

There is a great need to identify additional therapeutic strategies and compositions for the pharmacological neutralization of platelet reactivity (activation, recruitment, aggregation). In 20 particular, there is a need to identify compounds and compositions which target early portions of coagulation pathways such as the ADP-dependent activation and recruitment of platelets. There is, in fact, an urgent need to identify new strategies and compositions for the treatment of stroke, which is the third leading cause of death in the United States. In the case of stroke, an advantageous therapeutic agent will reduce intravascular thrombus burden and accompanying neurological defects 25 without increasing intracerebral hemorrhage.

SUMMARY OF THE INVENTION Soluble forms of CD39 having apyrase activity constitute a novel approach to the prevention and/or treatment of disease. The present invention provides soluble CD39 polypeptides and nucleic 30 acids, compositions comprising a pharmaceutical^ acceptable carrier and a soluble CD39 polypeptide, and methods of making and using soluble CD39 polypeptides having apyrase activity. The effectiveness of soluble CD39 polypeptides have been demonstrated in vitro, ex vivo, and in vivo.

The invention is directed to soluble CD39 polypeptides selected from the group consisting of: (a) polypeptides having an amino acid sequence as set forth in Figure 1 (SEQ ID NO:2) wherein the 35 amino terminus is selected from the group consisting of amino acids 36-44, and the carboxy terminus is selected from the group consisting of amino acids 471-478; (b) fragments of the polypeptides of (a) wherein said fragments have apyrase activity; (c) variants of the polypeptides of (a) or (b), wherein said variants have apyrase activity; and (d) fusion polypeptides comprising the polypeptides of (a), (b), 2 WO 00/23459 PCT/US99/22955 or (c), wherein said fusion polypeptides have apyrase activity. The invention provides compositions comprising a pharmaceutical^ acceptable carrier and a soluble CD39 polypeptide.

The invention is also directed to nucleic acids encoding a soluble CD39 polypeptide. The invention provides DNAs, vectors, recombinant cells, and recombinant methods for the production of 5 soluble CD39 polypeptides.

The invention is further directed to the use of soluble CD39 polypeptides for inhibiting platelet activation and recruitment, for inhibiting angiogenesis, or for degrading nucleoside tri- and/or di- phosphates in a mammal in need of such treatment. The invention encompasses the use of a soluble CD39 polypeptide for the preparation of a medicament for inhibiting platelet activation and 10 platelet recruitment, for inhibiting angiogenesis, or for degrading nucleoside tri- and/or di- phosphates in a mammal in need of such treatment. These and other aspects of the present invention will become evident upon reference to the following drawings, examples, and detailed description.

BRIEF DESCRIPTION OF THE DRAWINGS Figure 1 shows the predicted amino acid sequence (SEQ ID NO:2) of human CD39. The predicted amino acid sequence contains 6 potential N-linked glycosylation sites (double underline), and 11 cysteine residues (bold face). The two predicted transmembrane regions are underlined (single underline).

Figure 2 shows the domain structure of full length CD39 and of an engineered soluble form of 20 CD39. The locations of transmembrane regions near the amino- and carboxy-termini, the centrally located hydrophobic sequence, and a section containing the four putative apyrase conserved regions (ACR) are indicated. Cysteine residues are marked as "C". The soluble CD39 contains a FLAG® peptide and new leader sequence and lacks the two transmembrane regions.

Figure 3 shows the immunoaffinity depletion of solCD39 from COS-1 conditioned medium .25 (CM) following one (IX) or two (2X) rounds of adsorption. Samples were assayed for ATPase activity as described in Example 7. Data are expressed as pmoles of ATP degraded per minute.

Figure 4 shows the immunoprecipitation of solCD39 from COS-1 CM. Lane 2 shows the material that specifically bound to the antibody-coated beads. Lane 1 shows material that was pre-incubated with ovalbumin-coated beads to remove non-specifically bound material prior to addition of 30 Ab-coated beads. Migration of molecular weight standards is indicated in kilodaltons (kDa).

Figure 5 shows the immunoaffinity purification and characterization of soluble CD39 (solCD39). Figure 5A shows fractions from the immunoaffinity column analyzed by SDS-PAGE, Figure 5B shows enzyme activity in the fractions, and Figure 5C shows purified solCD39 before (Lane 1) and after (Lane 2) treatment with N-glycanase.

Figure 6A shows pH optimum profiles of HUVEC membrane ecto-ADPase (•) and recombinant solCD39 (■). Figure 6B shows is an Eadie-Hofstee plot of rates of metabolism at different concentrations of ATP (•) or ADP (■) using purified solCD39 (6.5 ng). 3 WO 00/23459 PCT/US99/22955 Figure 7 shows inhibition of ADP-induced platelet reactivity by purified solCD39 in platelet-rich plasma from a donor who had ingested aspirin. The response to increasing concentrations of ADP is shown in Fig. 7A. The effect of increasing quantities of purified soICD39 on the platelet aggregation response to 10 pM ADP is shown in Fig. 7B. Arrows indicate the addition of agonist.

Data are presented as relative light transmission vs. time (4 min duration).

Figure 8 shows a comparison of platelet reactivity as modulated by different agonists and inhibitors. The effects of CM from cells expressing solCD39 on platelet aggregation induced by 5 jiM ADP (Fig. 8A) and collagen (Fig. 8B) were compared in PRP and PRP treated with 10 |iM indomethacin. In Fig. 8B, 1 ng/ml collagen was used in the upper samples and 3.3 pg/ml in the lower 10 (indomethacin-treated) samples. Fig. 8C shows the inhibition of collagen-induced aggregation by increasing quantities of solCD39 in PRP from a donor who had ingested aspirin. The arrows indicate the addition of agonist. Data are presented as relative light transmission vs time (4 min.).

Figure 9 shows the effect of FSBA-treated solCD39 on platelet reactivity. Fig. 9A shows the effects of purified solCD39, FSBA-treated solCD39, and mock-treated solCD39 (each at 4.4 pg/ml) 15 on ASA-treated PRP after addition of 10 (iM ADP. Fig. 9B shows the effects of FSB A-treated solCD39 and mock-treated solCD39 (each at 22 (lg/ml) on ASA-treated PRP following addition of 3.3 Mg/ml collagen. Fig. 9C shows the titration of mock-treated solCD39 (0.88-2.2 fig/ml) against FSBA-treated solCD39 (22 ng/ml). ASA-treated PRP was stimulated with 10 nM ADP. Arrows indicate addition of agonist. Data are presented as relative light transmission vs time.

Figure 10 shows pharmacokinetic analyses of solCD39 in mice. CD39 in serum was measured in the radioactive phosphate release ATPase assay (■) or the ADPase assay (•). Activities are expressed as pmoles nucleotide degraded per minute. The dashed line indicates the ATPase activity of 25 pg/ml of solCD39 in murine serum. Distribution (tI/2a = 59 min (ATP); 43 min (ADP)) and clearance (tJ/2P = 40 h (ATP & ADP)) half-lives were determined using a biphasic curve fit.

Figure 11 shows bleeding times at 0 and 60 minutes in pigs treated with low, medium, or high doses of solCD39.

Figure 12 shows the effect of aspirin on pig platelet aggregation at baseline and day 5 after intravenous administration (Fig. 12A) and the effect of effect of high dose soICD39 on platelet aggregation at baseline and day 7 (Fig. 12B).

Figure 13 shows the inhibition of pig platelet aggregation by low, medium, and high doses of solCD39 as a function of time after bolus administration.

Figure 14 shows the concentration of CD39 in pig serum as a function of time after low, medium, or high dose administration. Distribution (tJQa = 29 min) and clearance (t]/2|J = 51 h) half- lives were determined using a biphasic curve fit.

Figure 15 shows the ex vivo aggregation of murine platelets. Platelets were stimulated with |iM ADP (Fig. 15A), 2.5 (ig/ml collagen (Fig. 15B), or 0.1 mM sodium arachidonate (Fig. 15C) after the administration of vehicle (saline), soluble CD39 (4 mg/kg) or aspirin (5 mg/kg). Soluble 4 WO 00/23459 PCT/US99/22955 CD39 treatment produced aggregation curves that returned to baseline following stimulation with agonists, but aspirin treatment yielded such a pattern only when arachidonate was the agonist.

Figure 16 shows reversal of the ADP-induced aggregation response in murine platelets when solCD39 is added at the peak of the aggregation response.

Figure 17 shows the inhibition of platelet (n=20, Fig. 17A) and fibrin (n=3, Fig. 17B) deposition following induction of stroke in mice pretreated with 8 mg/kg soluble CD39. "Fibrin" is a positive control, "Ipsilat" is ipsilateral (i.e., the ischemic hemisphere), and "Contralat" is the nonischemic hemisphere.

Figure 18 shows the comparative effects of vehicle (n=23), soluble CD39 (n=67) and aspirin 10 (n=27) on the outcome of induced stroke in mice. Fig. 18A shows cerebral blood flow, 18B shows cerebral infarct volume, 18C shows neurological score (where higher scores indicate a worse deficit (Connolly, E.S., Jr., et al., Neurosurg. 38(3):523-532 (1996)), 18D shows mortality, and 18E shows intracerebral hemorrhage. *p<0.05, *p<0.01, ^pcO.OOl.

Figure 19 shows a covariate plot of cerebral infarct volume vs. intracerebral hemorrhage. 15 Vehicle (saline), aspirin (ASA, 5 mg/kg prior to stroke), soluble CD39 (4 & 8 mg/kg, prior to stroke), and soluble CD39 (8 mg/kg, 3 h following stroke induction in mice) are compared.

Figure 20A shows the construct used to generate CD39-/- mice by homologous recombination. The labeled restriction sites are BgHI (B), SpeI (S), and Asp718 (A). Figure 20B shows a genomic Southern blot as used to identify ES clones having a disrupted CD39 allele. 20 Figure 21 shows the bleeding times in control (n=15), aspirin-treated (5 mg/kg, n=10), solCD39-treated (4,8, and 20 mg/kg, n=25) and solCD39-/- mice (n=10). (*p<0.05, *p<0.01, Vo.ooi).

Figure 22 shows a comparison of stroke outcomes in control (C57BL/6J x 129/J Fl) mice (n=6), CD39-/- mice (n=5), and CD39/- mice which were "reconstituted" with solCD39 (n=6). Figure 25 22A shows cerebral blood flow, 22B shows cerebral infarct volume, 22C shows neurological score, 22D shows mortality, and 22E shows intracerebral hemorrhage. *p<0.05, *p<0.01, rp<0.001.

Figure 23 is a Kaplan-Meier plot showing that solCD39 causes an improvement in survival in a stringent lung ischemia-reperfusion model.

Figure 24 shows an alignment of the N-terminal amino acid sequences of human CD39 and 30 human CD39-L4.

DETAILED DESCRIPTION OF THE INVENTION A cDNA encoding the cell-surface molecule CD39 has been isolated, cloned and sequenced. The nucleic acid sequence and predicted amino acid sequence of this cDNA are shown in SEQ ID 35 NO: 1 and SEQ ID NO:2. The present invention provides methods of using soluble forms of CD39, which were constructed by removing the amino- and carboxy-terminal transmembrane domains. Soluble CD39 retains the capacity of wildtype CD39 to metabolize ATP and ADP at physiologically relevant concentrations as well as the ability to block and reverse ADP-induced platelet activation and WO 00/23459 PCT/US99/22955 recruitment, including platelet aggregation. The use of soluble forms of CD39 is advantageous because purification of the polypeptides from recombinant host cells is facilitated, and because soluble polypeptides are generally more suitable than membrane-bound forms for clinical administration. Because CD39 inhibits platelet activation and recruitment, and therefore platelet aggregation, the S present invention provides methods and compositions for inhibiting formation of a thrombus at a site in a mammal at which platelets are inappropriately activated, methods for use in controlling platelet reactivity, thereby regulating the hemostatic and thrombotic processes, and methods of inhibiting and/or reversing platelet aggregation.

A. Hemostasis Hemostasis is defined as the arrest of bleeding from damaged blood vessels, and results from a sequence of physiologic and biochemical events. At least three interacting biological systems are involved in hemostasis: components of the blood vessels (such as the subendothelial matrix), platelets, and plasma proteins (Marcus, A.J.: Disorders of Hemostasis. Ratnoff and Forbes, eds., W.B. Saunders, 15 Philadelphia, 1996; pages 79-137; Marcus, A.J.: Platelet Activation, in: Atherosclerosis and Coronary Artery Disease, vol.1, Fuster, Ross and Topol, eds., Lipincott-Raven, Philadelphia, 1996; pages 607-637). A defect or defects in one or more of these systems can result in hemorrhagic disorder; conversely, the inappropriate activation of hemostasis culminates in development of arterial or venous thrombosis.

When a blood vessel is injured, it contracts, exposing subendothelial matrix components such as collagen, von Willebrand factor, fibronectin, thrombospondin, laminin, and microfibrils. Platelets adhere to, and are activated by, these components; collagen is an especially effective agonist for platelet activation. At least four physiologic events are initiated by platelet-collagen contact: the platelets release biologically active compounds; they express P-selectin on their cell surface (where it 25 mediates adhesion of neutrophils, monocytes and subsets of lymphocytes); the platelet eicosanoid pathway is activated (starting with the liberation of arachidonic acid which forms prostaglandin Hi); and the platelets undergo a drastic change in shape, from smooth disks to spiny spheres.

The biologically active compounds released by platelets are numerous, and multi-functional. Included in this group of components are serotonin, ATP, ADP, calcium, adhesive proteins 30 (fibrinogen, fibronectin, thrombospondin, vitronectin, von Willebrand factor), growth factors (platelet-derived growth factor, transforming growth factor-B, platelet factor 4) and coagulation factors (factor V, high-molecular weight kininogen, factor XI, protein S and plasminogen activator inhibitor-I (PAI-I)). Some of these compounds play a role in the recruitment of additional platelets and/or other cells such as neutrophils and monocytes to the site of activation, whereas others are involved in feedback 35 mechanisms to down-regulate excessive thrombus formation.

At least three separate endothelial thromboregulatory systems exist: the eicosanoids including the prostaglandins PGIi and PGD2; endothelium-dependent relaxing factor (EDRF/NO); and the ecto-nucleotidase ATP-diphosphohydrolase (ATPDase) which has both ADPase and ATPase activities. 6 While collagen and thrombin are the prime inducers of platelet secretion, ADP is the most important agonist of platelet aggregation present in the platelet releasate. Catabolism of ADP to AMP by the ecto-ADPase blocks further recruitment of additional platelets to the site, reverses the aggregation response and blocks subsequent thrombus response.

Ecto-nucleotidase activity is demonstrable in vitro in an aggregrometry system in which EDRF/NO effects and PGI2 production are blocked by hemoglobin and aspirin respectively (Marcus and Safler, FASEB J 7:516; 1993). In this system, loss of platelet stimulatory activity in the supernatant fluid correlates with ADP catabolism. An ADPase activity has been identified in the membrane fraction of human endothelial cells; enzyme activity detected by polyacrylamide gel 10 electrophoresis indicated both ATPase and ADPase (Marcus et al., Clin. Res. 40:226A (abstract), 1992).

B. Utility of the Claimed Invention Significant research efforts are directed to the discovery and characterization of platelet IS aggregation inhibitors because of the potential utility of such inhibitors in treating occlusive vascular disease. For example, WO 95/12412 discloses platelet-specific chimeric antibodies and methods of using the same in treating various thrombotic disorders. A prototype description of the efforts to develop this therapeutic agent and obtain approval for its use as a human therapeutic agent (generic name: abciximab, trade name: ReoPro®) was described by B.S. Coller in Circulation 92:2373 (1995). 20 CD39 is an ecto-ADPase (apyrase) located on the surface of endothelial cells. This enzyme is mainly responsible for the maintenance of blood fluidity, thus maintaining platelets in the baseline (resting) state. This is accomplished by metabolism of the major platelet agonist, adenosine diphosphate, to adenosine monophosphate, which is not an agonist. Because ADP is the most important agonist of platelet aggregation, and is present in platelet releasate, a substance which 25 catabolizes ADP is useful in treating or preventing disease states that involve inappropriate aggregation of platelets.

Examples of the therapeutic uses of soluble CD39 and compositions thereof include the treatment of individuals who suffer from coronary artery disease or injury following myocardial infarction, atherosclerosis, arteriosclerosis, preeclampsia, embolism, platelet-associated ischemic 30 disorders including lung ischemia, coronary ischemia, and cerebral ischemia, and for the prevention of reocclusion following thrombosis, thrombotic disorders including coronary artery thrombosis, cerebral artery thrombosis, intracardiac thrombosis, peripheral artery thrombosis, venous thrombosis, and thrombosis and coagulopathies associated with exposure to a foreign or injured tissue surface, in combination with angioplasty, carotid endarterectomy, anastomosis of vascular grafts, and chronic 35 cardiovascular devices such as in-dwelling catheters or shunts. Other instances in which it would be useful to inhibit increased ADP release due to increased platelet stimulation would be in individuals at high risk for thrombus formation or reformation (severe arteriosclerosis), and inhibition of occlusion, reocclusion, stenosis and/or restenosis of blood vessels. Individuals who will benefit from therapies 7 that involve inhibiting ADP-induced aggregation of platelets include those at risk for advanced coronary artery disease, and those that are or will be undergoing angioplasty procedures (i.e., balloon angioplasty, laser angioplasty, coronary atherectomy and similar techniques). Inhibition of platelet aggregation will also be useful in individuals undergoing surgery that has a high risk of thrombus 5 formation (i.e., coronary bypass surgery, insertion of a prosthetic valve or vessel and the like), and in the prevention or treatment of deep venous thrombosis (DVT), pulmonary embolism (PE), transient ischemic attacks (TIAs) and other related conditions where arterial occlusion is the common underlying feature. In addition, the ability of CD39 to block platelet activation and recruitment is useful for preventing stroke and for treating patients experiencing stroke due to vascular occlusion. In 10 particular, the methods, compounds, and compositions of the present invention have the ability to inhibit microvascular thrombosis, improve postischemic cerebral blood flow, and reduce cerebral infarction volumes and neurological deficit without inducing intracerebral hemorrhage, in stroke. Soluble CD39 and compositions thereof according to the present invention can also be administered in any other therapeutic setting where it would be useful to degrade nucleoside tri- and/or diphosphates. 15 As an example, soluble CD39 may be used as an anti-neoplastic agent to inhibit angiogenesis and/or prevent the survival benefits that ATP provides to tumor cells, or to treat other diseases or conditions mediated by angiogenesis such as occular neovascularization.

Soluble CD39 polypeptides also have many non-therapeutic uses, since they may be used in any application where soluble ATPase and/or ADPase activity is advantageous. As an example, 20 soluble CD39 polypeptides may be used in compositions for preserving platelets such as those described by Gepner-Puszkin (U.S. Patent No. 5,378,601). As another example, soluble CD39 polypeptides may be used in pyrophosphate-based DNA sequencing methodologies such as those described by Ronaghi et al. (Science 281:336, 1998). As a further example, soluble CD39 polypeptides can be used to screen for apyrase inhibitors.

C. CD39 Polypeptides The molecular cloning and structural characterization of CD39 is presented in Maliszewski et al. (J. Immunol. 153:3574,1994). CD39 contains two putative transmembrane regions, near the amino and carboxy termini, which may serve to anchor the native protein in the cell membrane. The portion 30 of the molecule between the transmembrane regions is external to the cell. As used herein, the term "CD39 polypeptides" includes CD39, homologs of CD39, variants, fragments, and derivatives of CD39, fusion polypeptides comprising CD39, and soluble forms of CD39 polypeptides.

Soluble polypeptides are polypeptides that are capable of being secreted from the cells in which they are expressed. A secreted soluble polypeptide may be identified (and distinguished from 35 its non-soluble membrane-bound counterparts) by separating intact cells which express the desired polypeptide from the culture medium, e.g., by centrifugation, and assaying the medium (supernatant) for the presence of the desired polypeptide. The presence of the desired polypeptide in the medium 8 WO 00/23459 PCT/US99/22955 indicates that the polypeptide was secreted from the cells and thus is a soluble form of the polypeptide. The use of soluble forms of CD39 is advantageous for many applications. Purification of the polypeptides from recombinant host cells is facilitated, since the soluble polypeptides are secreted from the cells. Moreover, soluble polypeptides are generally more suitable than membrane-bound S forms for parenteral administration and for many enzymatic procedures.

Apyrase activity resides in the extracellular domain of CD39. Thus, for applications requiring biological activity, useful CD39 polypeptides include soluble forms of CD39 such as those having an amino terminus selected from the group consisting of amino acids 36-44 of SEQ ID NO:2, and a carboxy terminus selected from the group consisting of amino acids 471-478 of SEQ ID NO:2, and 10 which exhibit CD39 biological activity. Soluble CD39 polypeptides also include those polypeptides which include part of either or both of the transmembrane regions, provided that the soluble CD39 polypeptide is capable of being secreted from a cell, and retains CD39 biological activity. Soluble CD39 polypeptides further include oligomers or fusion polypeptides comprising the extracellular portion of CD39, and fragments of any of these polypeptides that have biological activity. IS The term "biological activity," as used herein, includes apyrase enzymatic activity as well as the ex vivo and in vivo activities of CD39. Apyrases catalyze the hydrolysis of nucleoside tri- and/or di- phosphates, but a given apyrase may display different relative specificities for either nucleoside triphosphates or nucleoside diphosphates. Biological activity of soluble forms of CD39 may be determined, for example, in an ectonucleotidase or apyrase assay (e.g. ATPase or ADPase assays), or 20 in an assay that measures inhibition of platelet aggregation. Exemplary assays are disclosed herein; those of skill in the art will appreciate that other, similar types of assays can be used to measure biological activity.

Among the soluble CD39 polypeptides provided herein are variants (also referred to as analogs) of native CD39 polypeptides that retain a biological activity of CD39. Such variants include 25 polypeptides that are substantially homologous to native CD39, but which have an amino acid sequence different from that of a native CD39 because of one or more deletions, insertions or substitutions. Particular embodiments include, but are not limited to, CD39 polypeptides that comprise from one to ten deletions, insertions or substitutions of amino acid residues, when compared to a native CD39 sequence. The CD39-encoding DNAs of the present invention include variants that 30 differ from a native CD39 DNA sequence because of one or more deletions, insertions or substitutions, but that encode a biologically active polypeptide. Included as variants of CD39 polypeptides are those variants that are naturally occurring, such as allelic forms and alternatively spliced forms, as well as variants that have been constructed by modifying the amino acid sequence of a CD39 polypeptide or the nucleotide sequence of a nucleic acid encoding a CD39 polypeptide. 35 Generally, substitutions for one or more amino acids present in the native polypeptide should be made conservatively. Examples of conservative substitutions include substitution of amino acids outside of the active domain(s), and substitution of amino acids that do not alter the secondary and/or tertiary structure of CD39. Additional examples include substituting one aliphatic residue for another, 9 WO 00/23459 PCT/US99/22955 such as lie, Val, Leu, or Ala for one another, or substitutions of one polar residue for another, such as between Lys and Arg; Glu and Asp; or Gin and Asn. Other such conservative substitutions, for example, substitutions of entire regions having similar hydrophobicity characteristics, are known in the art.

When a deletion or insertion strategy is adopted, the potential effect of the deletion or insertion on biological activity must be considered. Subunits of the inventive polypeptides may be constructed by deleting terminal or internal residues or sequences. Additional guidance as to the types of mutations that can be made is provided by a comparison of the sequence of CD39 to polypeptides that have similar structures, as well as by performing structural analysis of the inventive polypeptides. 10 The native sequence of full length CD39 is set forth in Figure 1 (SEQ ID NO:2). In some preferred embodiments the CD39 variants are at least about 70% identical in amino acid sequence to the amino acid sequence of native CD39 as set forth in the sequence listing; in some preferred embodiments the CD39 variants are at least about 80% identical in amino acid sequence to the amino acid sequence of native CD39 as set forth in the sequence listing. In some more preferred 15 embodiments the variants of CD39 are at least about 90% identical in amino acid sequence to the amino acid sequence of native CD39 as set forth in the sequence listing; in some more preferred embodiments the variants of CD39 are at least about 95% identical in amino acid sequence to the amino acid sequence of native CD39 as set forth in the sequence listing. In some most preferred embodiments, variants of CD39 are at least about 98% identical in amino acid sequence to the amino 20 acid sequence of native CD39 as set forth in the sequence listing; in some most preferred embodiments, variants of CD39 are at least about 99% identical in amino acid sequence to the amino acid sequence of native CD39 as set forth in the sequence listing. Percent identity, in the case of both polypeptides and nucleic acids, may be determined by visual inspection. Percent identity may be determined using the alignment method of Needleman and Wunsch (J. Mol. Biol. 48:443,1970) as 25 revised by Smith and Waterman (Adv. Appl. Math 2:482,1981. Preferably, percent identity is determined by using a computer program, for example, the GAP computer program version 10.x available from the Genetics Computer Group (GCG; Madison, WI, see also Devereux et al., Nucl. Acids Res. 12:387,1984). The preferred default parameters for the GAP program include: (l)aunaTy comparison matrix (containing a value of 1 for identities and 0 for non-identities) for nucleotides, and 30 the weighted comparison matrix of Gribskov and Burgess, Nucl. Acids Res. 74:6745,1986, as described by Schwartz and Dayhoff, eds., Atlas of Protein Sequence and Structure, National Biomedical Research Foundation, pp. 353-358,1979 for amino acids; (2) a penalty of 30 (amino acids) or 50 (nucleotides) for each gap and an additional 1 (amino acids) or 3 (nucleotides) penalty for each symbol in each gap; (3) no penalty for end gaps; and (4) no maximum penalty for long gaps. 35 Other programs used by one skilled in the an of sequence comparison may also be used. For fragments of CD39, the percent identity is calculated based on that portion of CD39 that is present in the fragment.

WO 00/23459 PCT/US99/22955 The primary amino acid structure of soluble CD39 may be modified to create CD39 derivatives by forming covalent or aggregative conjugates with other chemical moieties, such as glycosyl groups, lipids, phosphate, acetyl groups and the like. Covalent derivatives of CD39 are prepared by linking particular functional groups to CD39 amino acid side chains or at the N-terminus 5 or C-terminus of a CD39 polypeptide or the extracellular domain thereof. CD39 derivatives also include CD39 polypeptides bound to various insoluble substrates, including cyanogen bromide-activated agarose structures, or similar agarose structures, or adsorbed to polyolefin surfaces (with or without glutaraldehyde cross-linking).

Fusion polypeptides of soluble CD39 within the scope of this invention include covalent or 10 aggregative conjugates of CD39 or its fragments with other polypeptides, such as by synthesis in recombinant culture as N-terminal or C-terminal fusions. One class of fusion polypeptides are discussed below in connection with soluble CD39 oligomers. As another example, a fusion polypeptide may comprise a signal peptide (which is also variously referred to as a signal sequence, signal, leader peptide, leader sequence, or leader) at the N-terminal region or C-terminal region of a 15 CD39 polypeptide which co-translationally or post-translationally directs transfer of the polypeptide from its site of synthesis to a site inside or outside of the cell membrane or cell wall (e.g. the a-factor leader of Saccharomyces\ several leader sequences are discussed in the examples that follow). It is particularly advantageous to fuse a signal peptide that promotes extracellular secretion to the N-terminus of a soluble CD39 polypeptide. In this case, the signal peptide is typically cleaved upon 20 secretion of the soluble CD39 from the cell.

In a particularly preferred embodiment, one or more amino acids are added to the N-terminus of a soluble CD39 polypeptide in order to improve the expression levels and/or stability of the CD39 polypeptide. The one or more amino acids include an Ala residue, fragments derived from the N-terminus of another member of the CD39 family (e.g., CD39L2, CD39L3, CD39L4) or from another 25 polypeptide such as ILr2, and other peptides, either naturally-occurring or designed based upon structural predictions, capable of adopting a stable secondary structure.

In a most preferred embodiment, a soluble CD39 polypeptide is initially synthesized as a fusion polypeptide comprising: (a) a signal peptide that promotes extracellular secretion of the soluble CD39 from the cell, the signal peptide being cleaved upon secretion, (b) one or more amino acids 30 added to the N-terminus of the soluble CD39 polypeptide in order to improve expression levels and/or stability, and (c) a fragment of CD39 that possesses biological activity.

CD39 fusion polypeptides can also comprise polypeptides added to provide novel polyfunctional entities. Further, soluble CD39-containing fusion polypeptides can comprise peptides added to facilitate purification and identification of soluble CD39. Such peptides include, for 35 example, poly-His or the antigenic identification peptides described in U.S. Patent No. 5,011,912 and in Hopp et al., Bio/Technology 6:1204,1988. One such peptide is the FLAG® peptide, Asp-Tyr-Lys-Asp-Asp-Asp-Asp-Lys (SEQ ID NO: 10), which is highly antigenic and provides an epitope reversibly 11 WO 00/23459 PCT/US99/22955 bound by a specific monoclonal antibody, enabling rapid assay and facile purification of expressed recombinant polypeptide. A murine hybridoma designated 4E11 produces a monoclonal antibody that binds the FLAG® peptide in the presence of certain divalent metal cations, as described in U.S. Patent 5,011,912, hereby incorporated by reference. The 4E11 hybridoma cell line has been deposited with 5 the American Type Culture Collection under accession no. HB 9259. Monoclonal antibodies that bind the FLAG® peptide are available from Eastman Kodak Co., Scientific Imaging Systems Division, New Haven, Connecticut.

Another particularly useful class of fusion polypeptides includes those that allow localization or concentration of CD39 at a site of platelet activation and recruitment. Such fusion polypeptides 10 comprise a moiety that specifically binds activated platelets and CD39, and can be prepared using recombinant DNA technology, or by using standard techniques for conjugation of polypeptides. For example, WO 95/12412 discloses platelet-specific chimeric antibodies and methods of using the same in treating various thrombotic disorders. These antibodies, or other platelet specific antibodies (for example, antibodies to P-selectin/CD62), are useful in forming fusion polypeptides with CD39. IS Moreover, humanized or single chain antibodies can be prepared, based on such platelet specific antibodies.

Counterstructure molecules (molecules that specifically bind polypeptides expressed on the cell surface of activated platelets) and fragments thereof that bind to platelets are also useful in forming fusion polypeptides that bind specifically to activated platelets. Exemplary counterstructures 20 include ligands for P-selectin/CD62 (see, i.e., Varki A., Proc Natl Acad Sci USA 91:7390,1994; Sammar et al., lnt Immunol 6:1027, 1994; Lenter et al., J Cell Biol 125:471, 1994).

Encompassed by the present invention are oligomers that contain CD39 polypeptides. CD39 oligomers may be in the form of covalently-linked or non-covalently-linked multimers, including dimers, trimers, or higher oligomers. Oligomers may be linked by disulfide bonds formed between 25 cysteine residues on different CD39 polypeptides. Alternatively, oligomers may be formed by constructing fusion polypeptides of CD39 and the Fc region of an immunoglobulin molecule, such as human IgGi, to yield a CD39/Fc fusion polypeptide. The term "Fc polypeptide" as used herein includes native and mutein forms of polypeptides derived from the Fc region of an antibody. Truncated forms of such polypeptides containing the hinge region that promotes dimerization are also 30 included. One suitable Fc polypeptide, described in PCT application WO 93/10151 (hereby incorporated by reference), is a single chain polypeptide extending from the N-terminal hinge region to the native C-terminus of the Fc region of a human IgGl antibody. Another useful Fc polypeptide is theFc mutein described in U.S. Patent 5,457,035 and in Baumet al., {EMBOJ. 13:3992-4001, 1994). The amino acid sequence of this mutein is identical to that of the native Fc sequence presented in WO 35 93/10151, excqrt that amino acid 19 has been changed from Leu to Ala, amino acid 20 has been changed from Leu to Glu, and amino acid 22 has been changed from Gly to Ala. The mutein exhibits reduced affinity for Fc receptors. The CD39/Fc fusion polypeptides are allowed to assemble much 12 WO 00/23459 PCT/US99/22955 like heavy chains of an antibody molecule to form divalent CD39. If fusion polypeptides are made with both heavy and light chains of an antibody, it is possible to form a CD39 oligomer with as many as four CD39 extracellular regions.

In some embodiments of the invention, oligomers comprising multiple CD39 polypeptides are 5 joined via covalent or non-covalent interactions between peptide moieties fused to the C39-polypeptides. Such peptide moieties may be peptide linkers (spacers), or peptides that have the property of promoting oligomerization. Leucine zippers and certain polypeptides derived from antibodies are among the peptides that can promote oligomerization of polypeptides.

The present invention comprises fusion polypeptides with or without spacer amino acid 10 linking groups. For example, two soluble CD39 domains can be linked with a linker sequence, such as (Gly)4Ser(Gly)5Ser, which is described in United States Patent 5,073,627. Other linker sequences include, for example, GlyAlaGlyGlyAlaGlySer(Gty)5Ser, (Gly4Ser)2, (GlyThrPro)3, and (Gly4Ser)3Gly4SerGly5Ser. Alternatively, CD39 can be linked to another polypeptide (non-CD39) with or without a spacer amino acid linking group. As shown in Example 9, ThrSerSer or 15 ThrSerSeiGly linkers may be used to fuse IL2 residues to soluble CD39. For the expression of soluble CD39, the inventors have made the surprising and unexpected discovery, that the fusion of 12 amino acids from the N-terminus of mature human IL2 to the solCD39 coding region, results in high levels of both expression and activity in the supernatants of transfected cells. Among the particularly preferred embodiments of the invention, therefore, are soluble CD39 polypeptides having an amino acid 20 sequence SEQ ID NO:6 and nucleic acids, such as SEQ ID NO:5, that encode soluble CD39 polypeptides having an amino acid sequence SEQ ID NO:6.

The present invention further includes soluble CD39 polypeptides with or without associated native-pattern glycosylation. CD39 expressed in yeast or mammalian expression systems (e.g., COS-7 cells) may be similar to or significantly different from a native CD39 polypeptide in molecular weight 25 and glycosylation patten), depending upon the choice of expression system. Expression of CD39 polypeptides in bacterial expression systems, such as E. coli, provides non-glycosylated molecules.

Different host cells may process polypeptides differentially, resulting in heterogeneous mixtures of polypeptides with variable N- or C-termini. Expression of soluble CD39 polypeptides in microbial expression systems, such as E. coli, generally provides a homogeneous polypeptide 30 preparation. Polypeptides may be differentially processed by a eukaryotic cell, resulting in variable N-and C-termini, and hence yield a heterogeneous polypeptide preparation. The present invention includes polypeptides, produced by eukaiyotic host cells, which have variable N-termini or C-termini. In one embodiment of the inventive CD39 polypeptides, the amino and carboxy termini can be about five amino acids different from those disclosed herein.

The skilled artisan will also recognize that the position(s) at which a signal peptide is cleaved may differ from that predicted by computer program, and may vary according to such factors as the type of host cells employed in expressing a recombinant soluble CD39 polypeptide. A polypeptide 13 WO 00/23459 PCT/US99/22955 preparation according to the invention may therefore include a mixture of polypeptide molecules having different N-terminal amino acids, resulting from cleavage of the signal peptide at more than one site.

D. Nucleic Acids S The invention encompasses full length nucleic acid molecules encoding soluble CD39 as well as isolated fragments and oligonucleotides derived from the nucleotide sequence of SEQ ID NO:l. Such nucleic acid sequences may include nucleotides 178-1494 of SEQ ID NO:l or a fragment thereof, and DNA and/or RNA sequences that hybridize to the coding region of the nucleotide sequence of SEQ ID NO:l, or its complement, under conditions of moderate stringency, and which 10 encode polypeptides or fragments thereof of the invention.

Nucleic acid sequences encoding soluble CD39 polypeptides having altered glycosylation sites, deleted or substituted Cys residues, or modified proteolytic cleavage sites, nucleic acid sequences encoding sub-units of CD39 polypeptides or fusion polypeptides of CD39 with other peptides, allelic variants of CD39, mammalian homologs of CD39, and nucleic acid sequences 15 encoding CD39 polypeptides derived from alternative mRNA constructs, or those that encode peptide having substituted or additional amino acids, are examples of nucleic acid sequences according to the invention.

Due to degeneracy of the genetic code, there can be considerable variation in nucleotide sequences encoding the same amino acid sequence. Included as embodiments of the invention are 20 sequences capable of hybridizing under moderately stringent conditions (e.g., prewashing solution of 5 X SSC, 0.5% SDS, 1.0 mM EDTA (pH 8.0) and hybridization conditions of 50°C, 5 X SSC, overnight) to the DNA sequences encoding soluble CD39, and other sequences which are degenerate to those which encode soluble CD39. The skilled artisan can determine additional combinations of salt and temperature that constitute moderate hybridization stringency. Conditions of higher 25 stringency include higher temperatures for hybridization and post-hybridization washes, and/or lower salt concentration.

In a preferred embodiment, CD39 DNAs include those that encode polypeptides that are at least about 70% or at least 80% identical in amino acid sequence to the amino acid sequence of native CD39 polypeptide as set forth in SEQ ID NO:l. In a more preferred embodiment, the encoded 30 variants of CD39 are at least about 90% or at least about 95% identical in amino acid sequence to the native form of CD39; in a most preferred embodiment, the encoded variants of CD39 are at least about 98% or at least about 99% identical in amino acid sequence to the native form of CD39. For DNAs that encode a fragment of CD39, percent identity of the fragment is based on percent identity to the corresponding portion of full-length CD39.

Mutations can be introduced into nucleic acids by synthesizing oligonucleotides containing a mutant sequence, flanked by restriction sites enabling ligation to fragments of the native sequence. 14 Following ligation, the resulting reconstructed sequence encodes a variant having the desired amino acid insertion, substitution, or deletion.

Alternatively, oligonucleotide-directed site-specific mutagenesis procedures can be employed to provide an altered gene having particular codons altered according to the substitution, deletion, or 5 insertion required. Exemplary methods of making the alterations set forth above are disclosed by Walder et al. (Gene 42:133, 1986); Bauer et al. (Gene 37:73,1985); Craik (BioTechniques, January 1985, 12-19); Smith et al. (Genetic Engineering: Principles and Methods, Plenum Press, 1981); and U.S. Patent Nos. 4,518,584 and 4,737,462 disclose suitable techniques, and are incorporated by reference herein.

The well known polymerase chain reaction (PCR) procedure also may be employed to generate and amplify a DNA sequence encoding a desired polypeptide or fragment thereof. Oligonucleotides that define the desired termini of the DNA fragment are employed as 5'and 3' primers. The oligonucleotides may additionally contain recognition sites for restriction endonucleases to facilitate insertion of the amplified DNA fragment into an expression vector. PCR techniques are 15 described in Saiki et al., Science 239:487,1988; Recombinant DNA Methodology, Wu et al., eds., Academic Press, Inc., San Diego, 1989, pp. 189-196; and PCR Protocols: A Guide to Methods and Applications, Ihnis et al., eds.. Academic Press, Inc., 1990.

DNA sequences that encode CD39 polypeptides comprising various additions or substitutions of amino acid residues or sequences, or deletions of terminal or internal residues or sequences not 20 needed for biological activity can be prepared. For example, N-glycosylation sites can be modified to preclude glycosylation while allowing expression of a homogeneous, reduced carbohydrate variant using yeast expression systems. N-glycosylation sites in eukaryotic polypeptides are characterized by an amino acid triplet Asn-X-Y, wherein X is any amino acid except Pro and Y is Ser or Thr. Appropriate modifications to the nucleotide sequence encoding this triplet will result in substitutions, 25 additions or deletions that prevent attachment of carbohydrate residues at the Asn side chain.

In another example, sequences encoding Cys residues can be altered to cause the Cys residues to be deleted or replaced with other amino acids, preventing formation of incorrect intramolecular disulfide bridges upon renaturation. Thus, Cys residues may be replaced with another amino acid or deleted without affecting polypeptide tertiary structure or disulfide bond formation. 30 Other approaches to mutagenesis involve modification of sequences encoding dibasic amino acid residues to enhance expression in yeast systems in which KEX2 protease activity is present Other variants are prepared by modification of adjacent dibasic amino acid residues, to enhance expression in yeast systems in which KEX2 protease activity is present. EP 212,914 discloses the use of site-specific mutagenesis to inactivate KEX2 protease processing sites in a polypeptide. KEX2 protease 35 processing sites are inactivated by deleting, adding or substituting residues to alter Arg-Arg, Arg-Lys, and Lys-Arg pairs to eliminate the occurrence of these adjacent basic residues. Similar modification may be made to sequences encoding sites recognized and cleaved by other proteolytic enzymes. Sub-units of a CD39 polypeptide may be constructed by deleting sequences encoding terminal or internal WO 00/23459 PCT/US99/22955 residues or sequences not necessary for biological activity. Sequences encoding fusion polypeptides as described below may be constructed by ligating sequences encoding additional amino acid residues to the inventive sequences without affecting biological activity.

Mutations in nucleotide sequences constructed for expression of a soluble CD39 must, of 5 course, preserve the reading frame phase of the coding sequences and preferably will not create complementary regions that could hybridize to produce secondary mRNA structures such as loops or haiipins which would adversely affect translation of the receptor mRNA. Although a mutation site may be predetermined, it is not necessary that the nature of the mutation per se be predetermined. For example, in order to select for optimum characteristics of mutants at a given site, random mutagenesis 10 may be conducted at the target codon and the expressed mutated polypeptides screened for the desired activity.

Not all mutations in the nucleotide sequence which encodes a CD39 polypeptide will be expressed in the final product, for example, nucleotide substitutions may be made to enhance expression, primarily to avoid secondary structure loops in the transcribed mRNA (see EPA 75.444A, 15 incorporated herein by reference), or to provide codons that are more readily translated by the selected host, e.g., the well-known E. coli preference codons for E. coli expression.

In the genome, CD39 polypeptides are encoded by multi-exon genes. The present invention further includes alternative mRNA constructs which can be attributed to different mRNA splicing events following transcription and which hybridize with the cDNAs disclosed herein under conditions 20 of moderate stringency. CD39 polypeptides according to the invention include allelic variations of the sequence shown in SEQ ID NO:l, and sequences encoding CD39 polypeptides that comprise additional amino acids to those of SEQ ID NO:l.

The isolated nucleic acid sequences of this invention are sufficiently free of association with nucleic acid sequences encoding other proteinaceous material, and from other materials found in living 25 cells, such as proteins, lipids or carbohydrates, to allow the skilled artisan to prepare vectors for the expression of soluble CD39 polypeptides.

E. Recombinant Expression Systems The present invention also provides recombinant cloning and expression vectors containing CD39 DNA, as well as host cells containing the recombinant vectors. Expression vectors comprising 30 CD39 DNA may be used to prepare soluble CD39 polypeptides encoded by the DNA. The expression vectors carrying the recombinant CD39 DNA sequence are transferred, for example by transfection or transformation, into a substantially homogeneous culture of a suitable host microorganism or mammalian cell line. Transformed host cells are cells which have been transformed or transfected with nucleotide sequences encoding CD39 polypeptides and express CD39 polypeptides. Expressed 35 CD39 polypeptides will be located within the host cell and/or secreted into culture supernatant fluid, depending upon the nature of the host cell and the gene construct inserted into the host cell. The 16 skilled artisan will recognize that the procedure for purifying the expressed CD39 will vary according to such factors as the type of host cells employed.

Any suitable expression system may be employed. Recombinant expression vectors for expression of soluble CD39 by recombinant DNA techniques include a CD39 DNA sequence 5 comprising a synthetic or cDNA-derived DNA fragment encoding a CD39 polypeptide, operably linked to a suitable transcriptional or translational regulatory nucleotide sequence, such as one derived from a mammalian, microbial, viral, or insect gene.

Examples of regulatory sequences include transcriptional promoters, operators, or enhancers, an mRNA ribosomal binding site, and appropriate sequences which control transcription and 10 translation initiation and termination. Nucleotide sequences are operably linked when the regulatory sequence functionally relates to the CD39 DNA sequence. Thus, a promoter nucleotide sequence is operably linked to a CD39 DNA sequence if the promoter nucleotide sequence controls the transcription of the CD39 DNA sequence. An origin of replication that confers the ability to replicate in the desired host cells, and a selection gene by which transformants are identified, are generally IS incorporated into the expression vector.

In addition, a sequence encoding an appropriate signal peptide (native or heterologous) can be incorporated into expression vectors. A DNA sequence for a signal peptide (secretory leader) may be fused in frame to the CD39 sequence so that the CD39 is initially translated as a fusion polypeptide comprising the signal peptide. A signal peptide that is functional in the intended host cells promotes 20 extracellular secretion of the CD39 polypeptide. The signal peptide is cleaved from the CD39 polypeptide upon secretion of soluble CD39 from the cell.

Regarding signal peptides that may be employed in producing soluble CD39, the native signal peptide may be replaced by a heterologous signal peptide or leader sequence, if desired. The choice of signal peptide or leader may depend on factors such as the type of host cells in which the recombinant 25 polypeptide is to be produced. To illustrate, examples of heterologous signal peptides that are functional in mammalian host cells include the signal sequence for interleukin-7 (IL-7) described in United States Patent 4,965,195, the signal sequence for interleukin-2 receptor described in Cosman et al., Nature 312:768,1984; the interleukin-4 receptor signal peptide described in EP 367,566; the type I interleukin-1 receptor signal peptide described in U.S. Patent 4,968,607; and the type II interleukin-1 30 receptor signal peptide described in EP 460,846. For the expression of soluble CD39, the inventors have made the surprising and unexpected discovery that the use of a leader containing sequences derived from a human IL-2 polypeptide (SEQ ID NO:9) results in high levels of ATPase activity in the supematants of transfected cells. Among the particularly preferred embodiments of the invention, therefore, are nucleic acids encoding soluble CD39 polypeptides having an amino acid sequence SEQ 35 ID NO:8.

Suitable host cells for expression of CD39 polypeptides include prokaryotes, yeast or higher eukaryotic cells. Mammalian or insect cells are generally preferred for use as host cells. Appropriate cloning and expression vectors for use with bacterial, fungal, yeast, and mammalian cellular hosts are 17 WO 00/23459 PCT/US99/22955 described, for example, in Pouwels et al. Cloning Vectors: A Laboratory Manual, Elsevier, New York, 1985. Cell-free translation systems could also be employed to produce soluble CD39 polypeptides using RNAs derived from DNA constructs disclosed herein.

Prokaryotes include gram negative or gram positive organisms, for example, E. coli or 5 Bacilli. Suitable prokaryotic host cells for transformation include, for example, E. coli. Bacillus subtilis, Salmonella typhimurium, and various other species within the genera Pseudomonas, Streptomyces, and Staphylococcus. In a prokaryotic host cell, such as E. coli, polypeptides may include an N-terminal methionine residue to facilitate expression of the recombinant polypeptide in the prokaryotic host cell. The N-terminal Met may be cleaved from the expressed recombinant 10 polypeptide.

Expression vectors for use in prokaryotic host cells generally comprise one or more phenotypic selectable marker genes. A phenotypic selectable marker gene is, for example, a gene encoding a protein that confers antibiotic resistance or that supplies an autotrophic requirement. Examples of useful expression vectors for prokaryotic host cells include those derived from 15 commercially available plasmids such as the cloning vector pBR322 (ATCC 37017). pBR322 contains genes for ampicillin and tetracycline resistance and thus provides simple means for identifying transformed cells. An appropriate promoter and a CD39 DNA sequence are inserted into the pBR322 vector. Other commercially available vectors include, for example, pKK223-3 (Pharmacia Fine Chemicals, Uppsala, Sweden) and pGEMl (Promega Biotec, Madison, WI, USA). 20 Promoter sequences commonly used for recombinant prokaryotic host cell expression vectors include P-lactamase (penicillinase), lactose promoter system (Chang et al., Nature 275:615,1978; and Goeddel et al., Nature 257:544, 1979), tryptophan (trp) promoter system (Goeddel et al., Nucl. Acids Res. 8:4057,1980; and EP-A-36776) and tac promoter (Maniatis, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory, p. 412, 1982). A particularly useful prokaryotic host cell 25 expression system employs a phage X Pl promoter and a cI857ts thermolabile repressor sequence.

Plasmid vectors available from the American Type Culture Collection which incorporate derivatives of the A. Pl promoter include plasmid pHUB2 (resident in E. coli strain JMB9, ATCC 37092) and pPLc28 (resident in E. coli RR1, ATCC 53082).

Soluble CD39 may also be expressed in yeast host cells, preferably from the Saccharomyces 30 genus (e.g., S. cerevisiae). Other genera of yeast, such as Pichia or Kluyveromyces, may also be employed. Yeast vectors will often contain an origin of replication sequence from a 2\i yeast plasmid, an autonomously replicating sequence (ARS), a promoter region, sequences for polyadenylation, sequences for transcription termination, and a selectable marker gene. Suitable promoter sequences for yeast vectors include, among others, promoters for metallothionein, 3-phosphoglycerate kinase 35 (Hitzeman et al., J. Biol. Chem. 255:2073,1980) or other glycolytic enzymes (Hess et al., J. Adv. Enzyme Reg. 7:149,1968; and Holland et al., Biochem. 77:4900,1978), such as enolase, glyceraldehyde-3-phosphate dehydrogenase, hexokinase, pyruvate decarboxylase, 18 WO 00/23459 PCT/US99/22955 phosphofructokinase, glucose-6-phosphate isomerase, 3-phosphoglycerate mutase, pyruvate kinase, triosephosphate isomerase, phospho-glucose isomerase, and glucokinase. Other suitable vectors and promoters for use in yeast expression are further described in Hitzeman, EPA-73,657. Another alternative is the glucose-repressible ADH2 promoter described by Russell et al. (J. Biol. Chem. 258:2674, 1982) and Beier et al. (Nature 300.124,1982). Shuttle vectors replicable in both yeast and E. coli may be constructed by inserting DNA sequences from pBR322 for selection and replication in E. coli (Ampr gene and origin of replication) into the above-described yeast vectors.

The yeast a-factor leader sequence may be employed to direct secretion of recombinant polypeptides. The a-factor leader sequence is often inserted between the promoter sequence and the 10 structural gene sequence. See, e.g., Kuijan et al., Cell 30:933,1982 and Bitter et al., Proc. Natl. Acad. Sci. USA 57:5330, 1984. Other leader sequences suitable for facilitating secretion of recombinant polypeptides from yeast hosts are known to those of skill in the art. A leader sequence may be modified near its 3' end to contain one or more restriction sites. This will facilitate fusion of the leader sequence to the structural gene.

Yeast transformation protocols are known to those of skill in the art. One such protocol is described by Hinnen et al., Proc. Natl. Acad. Sci. USA 75:1929,1978. The Hinnen et al. protocol selects forTrp+ transformants in a selective medium, wherein the selective medium consists of 0.67% yeast nitrogen base, 0.5% casamino acids, 2% glucose, 10 ng/ml adenine and 20 pg/ml uracil.

Yeast host cells transformed by vectors containing an ADH2 promoter sequence may be 20 . grown for inducing expression in a "rich" medium. An example of a rich medium is one consisting of 1% yeast extract, 2% peptone, and 1% glucose supplemented with 80 |ig/ml adenine and 80 (ig/ml uracil. Derepression of the ADH2 promoter occurs when glucose is exhausted from the medium.

Mammalian or insect host cell culture systems also may be employed to express recombinant CD39 polypeptides. Bacculovirus systems for production of heterologous polypeptides in insect cells 25 are reviewed by Luckow and Summers, Bio/Technology 6:47,1988. Established cell lines of mammalian origin may also be used. Examples of suitable mammalian host cell lines include the COS-7 line of monkey kidney cells (ATCCCRL 1651) (Gluzman etal., Cell23:\15,1981), Lcells, CI27 cells, 3T3 cells (ATCC CCL 163), Chinese hamster ovary (CHO) cells, HeLa cells, and BHK (ATCC CRL 10) cell lines, and the CV1/EBNA cell line derived from the African green monkey 30 kidney cell line CV1 (ATCC CCL 70) as described by McMahan et al. (EMBO J. 10:2821,1991). For the production of therapeutic polypeptides it is particularly advantageous to use a mammalian host cell line which has been adapted to grow in media that does not contain animal proteins. The use of such a cell line for the expression of soluble CD39 is described in Example 13.

Established methods for introducing DNA into mammalian cells have been described 35 (Kaufman, R.J., Large Scale Mammalian Cell Culture, 1990, pp. 15-69). Additional protocols using commercially available reagents, such as Lipofectamine (Gibco/BRL) or Lipofectamine-Plus, can be used to transfect cells (Feigner et al., Proc. Natl. Acad Sci. USA 54:7413-7417,1987). In addition, 19 WO 00/23459 PCT/US99/22955 electroporation can be used to transfect mammalian cells using conventional procedures, such as those in Sambrook et al. Molecular Cloning: A Laboratory Manual, 2 ed. Vol. 1-3, Cold Spring Harbor Laboratory Press, 1989). Selection of stable transformants can be performed using methods known in the art, such as, for example, resistance to cytotoxic drugs. Kaufman et al., Meth. in Enzymology 5 . 185:487-511,1990, describes several selection schemes, such as dihydrofolate reductase (DHFR) resistance. A suitable host strain for DHFR selection can be CHO strain DX-B 11, which is deficient in DHFR (Urlaub and Chasin, Proc. Natl. Acad. Sci. USA 77:4216-4220,1980). A plasmid expressing the DHFR cDNA can be introduced into strain DX-B 11, and only cells that contain the plasmid can grow in the appropriate selective media. Other examples of selectable markers that can be 10 incorporated into an expression vector include cDNAs conferring resistance to antibiotics, such as G418 and hygromycin B. Cells harboring the vector can be selected on the basis of resistance to these compounds.

Transcriptional and translational control sequences for mammalian host cell expression vectors can be excised from viral genomes. Commonly used promoter sequences and enhancer 15 sequences are derived from polyoma virus, adenovirus 2, simian virus 40 (SV40), and human cytomegalovirus. DNA sequences derived from the SV40 viral genome, for example, SV40 origin, early and late promoter, enhancer, splice, and polyadenylation sites can be used to provide other genetic elements for expression of a structural gene sequence in a mammalian host cell. Viral early and late promoters are particularly useful because both are easily obtained from a viral genome as a 20 fragment, which can also contain a viral origin of replication (Fiers et al.. Nature 273:113,1978; Kaufman, Meth. in Enzymology, 1990). Smaller or larger SV40 fragments can also be used, provided the approximately 250 bp sequence extending from the Hind III site toward the Bgl I site located in the SV40 viral origin of replication site is included.

Additional control sequences shown to improve expression of heterologous genes from 25 mammalian expression vectors include such elements as the expression augmenting sequence element (EASE) derived from CHO cells (Morris et al., Animal Cell Technology, 1997, pp. 529-534) and the tripartite leader (TPL) and VA gene RNAs from Adenovirus 2 (Gingeras et al., J. Biol. Chem. 257:13475-13491,1982). The internal ribosome entry site (IRES) sequences of viral origin allows dicistronic mRNAs to be translated efficiently (Oh and Sarnow, Current Opinion in Genetics and 30 Development 3:295-300,1993; Ramesh et al., Nucleic Acids Research 24:2697-2700,1996). Expression of a heterologous cDNA as part of a dicistronic mRNA followed by the gene for a selectable marker (e.g. DHFR) has been shown to improve transferability of the host and expression of the heterologous cDNA (Kaufman, Meth. in Enzymology, 1990). Exemplary expression vectors that employ dicistronic mRNAs are pTR-DC/GFP described by Mosser et al., Biotechniques 22:150-35 161,1997, and p2A5I described by Morris et al., Animal Cell Technology, 1997, pp. 529-534.

A useful high expression vector, pCAVNOT, has been described by Mosley et al., Cell 59:335-348, 1989. Other expression vectors for use in mammalian host cells can be constructed as disclosed by Okayama and Berg (Mol. Cell. Biol. 3:280,1983). A useful system for stable high level PCT/L S99/22955 expression of mammalian cDNAs in CI27 murine mammary epithelial cells can be constructed substantially as described by Cosman et al. (Mol. Immunol. 23:935,1986). A useful high expression vector, PMLSV N1/N4, described by Cosman et al.. Nature 312:768,1984, has been deposited as ATCC 39890. Additional useful mammalian expression vectors are described in EP-A-0367S66, and 5 in U.S. Patent Application Serial No. 07/701,415, filed May 16,1991, incorporated by reference herein. The vectors can be derived from retroviruses. In place of the native signal sequence, a heterologous signal sequence can be added, such as the signal sequence for IL-7 described in United States Patent 4,965,195; the signal sequence for IL-2 receptor described in Cosman et al.. Nature 372:768,1984; the IL-4 signal peptide described in EP 367,566; the type IIL-1 receptor signal peptide 10 described in U.S. Patent 4,968,607; and the type n IL-1 receptor signal peptide described in EP 460,846.

Another useful expression vector, pFLAG, can be used. FLAG® technology is centered on the fusion of a low molecular weight (lkD), hydrophilic, FLAG® marker peptide to the N-Terminus of a recombinant polypeptide expressed by the pFLAG-1™ Expression Vector (obtained from IBI 15 Kodak).

F. Purification of soluble CD39 Polypeptides Soluble CD39 polypeptides may be prepared by culturing transformed host cells under culture conditions necessary to express CD39 polypeptides. The resulting expressed polypeptides may then 20 be purified from culture media or cell extracts. Supernatant fluid from the cultured, transformed host cells may be concentrated using a commercially available protein concentration filter, for example, an Amicon or Millipore Peilicon ultrafiltration unit. Following the concentration step, the concentrate may be applied to a cation exchange matrix. Suitable cation exchangers include various insoluble matrices comprising sulfonic or carboxymethyl groups; sulfonic groups are preferred. The matrices 25 can be acrylamide, agarose, dextran, cellulose or other types commonly employed in protein purification. Subsequently, an anion exchange resin is employed, for example, a matrix or substrate having pendant diethylaminoethyl (DEAE) or quaternary amino groups; quaternary amino groups are preferred. The matrices can be acrylamide, agarose, dextran, cellulose or other types commonly employed in protein purification. Additionally, a gel filtration medium may be employed to further 30 purify CD39 polypeptides according to approximate molecular weight. Alternatively, certain of these steps may not be performed, or may be performed in the reverse order.

One or more reverse-phase high performance liquid chromatography (RP-HPLC) steps employing hydrophobic RP-HPLC media, (e.g., silica gel having pendant methyl or other aliphatic groups) may be employed to further purify CD39. A substantially purified and homogeneous 35 polypeptide having CD39 biological activity may be eluted from a polyacrylamide gel subsequent to electrophoretic separation. Some or all of the foregoing purification steps, in various combinations, can also be employed to provide a substantially purified and homogeneous recombinant polypeptide 21 WO 00/23459 PCT/US99/22955 containing less than about I % by mass of protein contaminants residual of production processes, or alternatively, which is greater than about 95 % pure by gel electrophoresis.

Affinity chromatography may be utilized to purify soluble CD39. Affinity purification of soluble CD39 from conditioned media is described in Example 12C. Moreover, small amounts of 5 purified CD39 may be obtained by immunoprecipitating CD39 with a monoclonal antibody, electrophoresing the immunoprecipitate on a polyaciyiamide gel, excising the portion of the gel containing the CD39, and eluting the CD39 from the excised portion of the gel.

Recombinant polypeptides produced in bacterial culture are generally isolated by disruption of the host cells, centrifugation, extraction from cell pellets if an insoluble polypeptide, or from the 10 supernatant fluid if a soluble polypeptide, followed by one or more concentration, salting-out, ion exchange, affinity purification or size exclusion chromatography steps. Finally, RP-HPLC can be employed for final purification steps. Microbial cells can be disrupted by any convenient method, including freeze-thaw cycling, sonication, mechanical disruption, or use of cell lysing agents.

Transformed yeast host cells may be employed to express CD39 as a secreted polypeptide. 15 This simplifies purification. Secreted recombinant polypeptide from a yeast host cell fermentation can be purified by methods analogous to those disclosed by Urdal et al. (J. Chromatog. 296:171,1984). Urdal et al. describe two sequential, reversed-phase HPLC steps for purification of recombinant human IL-2 on a preparative HPLC column.

The desired degree of purity of soluble CD39 polypeptides depends on the intended use of the 20 polypeptide. A relatively high degree of purity is desired when the polypeptide is to be administered in vivo, for example. Advantageously, soluble CD39 polypeptides are purified such that no protein bands corresponding to other (non-CD39) polypeptides are detectable upon analysis by SDS-polyacrylamide gel electrophoresis (SDS-PAGE). Following electrophoresis, the protein band may be visualized by silver staining, Coomassie blue staining, or (if the protein is radiolabeled) by 25 autoradiography. It will be recognized by one skilled in the pertinent field that multiple bands corresponding to CD39 polypeptide may be visualized by SDS-PAGE, due to differential glycosylation, differential post-translational processing, and the like.

G. Therapeutic Compositions of CD39 Polypeptides The present invention provides compositions comprising an effective amount of a soluble 30 CD39 polypeptide in a pharmaceutically acceptable carrier. As used herein, the terms "therapy," "therapeutic," "treat," and "treatment" generally include prophylaxis, i.e., prevention, of a disease or condition in addition to therapy or treatment for an extant disease or condition. Therapeutic compositions of soluble CD39 polypeptides may therefore need to be administered before, during, or after the presentation of symptoms. For therapeutic use, a soluble CD39 polypeptide is administered 35 to a patient for treatment in a manner appropriate to the indication. Thus, for example, soluble CD39 pharmaceutical compositions which are administered to achieve a desired therapeutic effect can be given by bolus injection, continuous infusion, sustained release from implants or the like, or other 22 WO 00/23459 PCT/US99/22955 suitable technique. Ideally, development of a stable form of CD39 or closely related biologically active variant would allow its use in oral form, a preferable route of adminisu-ation. Since CD39 is aspirin-insensitive, these two therapeutic agents (CD39 compositions and aspirin) can be used in combination, for maximal benefit.

Typically, a soluble CD39 therapeutic agent will be administered in the form of a pharmaceutical composition comprising purified soluble CD39 in conjunction with physiologically acceptable carriers, including excipients or diluents. Such carriers will be nontoxic to patients at the dosages and concentrations employed. As described in the examples that follow, the administration of CD39 in murine and porcine models of thrombosis does not cause any observable toxic effects. 10 Moreover, a second dose of CD39 does not evoke any signs of immuriogenicity. Ordinarily, the preparation of such compositions entails combining a soluble CD39 composition with buffers, antioxidants such as ascorbic acid, low molecular weight (less than about 10 residues) polypeptides, polypeptides, amino acids, carbohydrates including glucose, sucrose or dextrans, chelating agents such as EDTA, glutathione and other stabilizers and excipients. Neutral buffered saline or saline mixed IS with conspecific serum albumin are exemplary appropriate diluents.

One type of sustained release technology which may be used in administering soluble CD39 compositions is that utilizing hydrogel materials, for example, photopolymerizable hydrogels (Sawhney et al., Macromolecules 26:581; 1993). Similar hydrogels have been used to prevent postsurgical adhesion formation (Hill-West et al., Obstet. Gynecol. 83:59,1994) and to prevent 20 thrombosis and vessel narrowing following vascular injury (Hill-West et al., Proc. Natl. Acad.. Sci. USA 91:5967,1994). Polypeptides can be incorporated into such hydrogels to provide sustained, localized release of active agents (West and Hubbel, Reactive Polymers 25:139,1995; Hill-West et al., J. Surg. Res. 58:759; 1995). The sustained, localized release of CD39 when incorporated into hydrogels would be amplified by the long half life of CD39, which is demonstrated in the Examples 25 below.

Accordingly, the soluble CD39 compositions described herein can also be incorporated into hydrogels, for application to tissues for which localized inhibition of hemostasis is desirable. For example, a hydrogel incorporating a CD39 polypeptide can be applied to tissue after surgery, to prevent or reduce post-surgical adhesion formation, or can be applied using a catheter-based delivery 30 system following angioplasty to prevent or reduce restenosis. Those of skill in the art will be able to formulate an appropriate hydrogel by applying standard pharmacokinetic studies, for example as discussed in West and Hubbell, supra.

Effective amounts may vary, depending on the age, type and severity of the condition to be treated, body weight, desired duration of treatment, method of administration, and other parameters. 35 Effective dosages are determined by a physician or other qualified medical professional. Typical dosages are 0.01-100 mg/kg body weight, preferably 0.1-10 mg/kg body weight. In some embodiments a single administration is sufficient; in some embodiments the soluble CD39 polypeptide is administered on a daily basis for up to a week or as much as a month or more. 23 The biological effectiveness of soluble CD39 polypeptides is easily evaluable: at given time intervals after administration, a prolongation of the bleeding time in the setting of unchanged platelet count should be measurable if released platelet ADP has been metabolized by the CD39 composition administered. This would indicate that a therapeutic effect has likely been obtained, as said 5 measurement correlates with clinical improvement. A therapeutic effect can also be validated by testing platelet reactivity to ADP and other platelet agonists ex vivo. Actual measurements of enzyme (apyrase) activity can also be made following administration of soluble CD39. These and other methods of measuring biological effectiveness are illustrated in the Examples below.

H. Abbreviations Used in the Specification ACR, apyrase conserved regions; AG, Affigel beads; ASA, acetylsalicylic acid; ATPDase, ATP diphosphohydolase; 15 CHO, Chinese hamster ovary; CM, conditioned medium; DHFR, dihydrofolate reductase; FSBA, fluorosulfonylbenzoyl-adenosine; HUVEC, human umbilical vein endothelial cells; 20 PRP, platelet-rich plasma; PTCA, percutaneous transluminal coronary angioplasty; solCD39, recombinant soluble human CD39; TBS, Tris-buffered saline EXAMPLES The following examples are intended to illustrate particular embodiments and not to limit the scope of the invention.

EXAMPLE 1 Assay For CD39 Expression This example describes the use of a monoclonal antibody in a FACS assay to analyze expression of CD39. The B73 mAb, a monoclonal anti-CD39, is a murine IgGl that was derived from BALB/c mice immunized with theRPMI 1788 cell line (Rector et al., Immunology 55:481, 1985) and characterized as CD39-specific by flow cytometric analysis and immunoprecipitation/SDS-PAGE.

Monoclonal anti-CD39 is purified from ascites fluid by affinity chromatography using a protein A column, eluted with 0.05 M sodium citrate, pH 3.0, neutralized and stored a 4°C at a concentration of about 1 mg/ml. 24 Cells to be analyzed (e.g., MP-1 cells, U937 cells, U937 cells stimulated with 5 ng/ml phorbol myristate acetate (PMA), or Daudi cells) ate suspended to a concentration of 10^ cell in 50 pi of phosphate buffered saline (PBS) containing 100 |ig/ml human IgGl, and incubated for 30 minutes. The cells are then pelleted by centrifugation, resuspended in PBS/azide containing a first antibody 5 (anti-CD39 or control antibody) and incubated (i.e., for 30 minutes at 4°C) The cells are then washed two times in PBS/azide, resuspended, and incubated with a labeled second antibody, for example, goat anti-murine immunoglobulin conjugated to phycoerythrin, then washed again. The cells are analyzed by flow cytometry, and levels of CD39 determined.

EXAMPLE 2 Immunoselection of Cells Expressing CD39 This example describes a panning (immunoselection) technique for cells expressing CD39. For the preparation of pan plates, purified anti-CD39 or control antibody is diluted in phosphate buffered saline containing 0.1 % heat-inactivated fetal calf serum (PBS/FCS). A titration of anti-CD39 15 can be performed to determine the most effective concentration of anti-CD39. Pan plates are prepared by adding three ml of antibody solution or PBS/FCS alone to each plate. The plates are incubated for approximately one hour at room temperature, washed five times with PBS/FCS, and three ml of PBS/FCS containing 0.02% sodium azide are added to each plate.

The cells to be analyzed (e.g., MP-1, U937, or Daudi cells) are suspended in PBS/500 pM 20 EDTA/0.02% sodium azide (PEA) containing 5% goat serum, 5% rabbit serum and 100 fig/ml human IgGl, t° a concentration of 2 x 10*> cells/ml; 500 ill of each cell suspension is added to the prepared pan plates. The pan plates are incubated with the cell suspension for approximately two hours at room temperature, then the plates are washed gently three times with PEA containing 10% FCS (PEA/PCS), and three times with PEA. The plates are examined with a microscope, and the relative number of 25 cells bound to each plate is determined.

EXAMPLE 3 cDNA Library Construction This example describes preparation of a cDNA library from a human B cell line referred to as 30 MP-1, for expression cloning of human CD39.

The library construction techniques were substantially similar to that described by Ausubel et al., eds., Current Protocols In Molecular Biology, Vol. 1,1987. Briefly, total RNA was extracted from 8M guanidine HCl-lysed MP-1 cell cultures using differential ethanol precipitation and poly (A)+ mRNA was isolated and enriched by oligo dT cellulose chromatography. Double-stranded 35 cDNA was made from an RNA template substantially as described by Gubler et al., Gene 25:263, 1983. Poly(A)+ mRNA fragments were converted to RNA-cDNA hybrids using reverse transcriptase primed with random hexanucleotides. The RNA-cDNA hybrids were then converted into double- WO 00/23459 PCT/US99/22955 stranded cDNA fragments using RNAase H in combination with DNA polymerase I. The resulting double-stranded cDNA was blunt-ended with T4 DNA polymerase.

Unkinased (i.e. unphosphorylated) BglII adaptors were ligated to 5'ends of the above blunt-ended cDNA duplexes, using the adaptor cloning method described in Haymerle et al., Nucleic Acids 5 Res. 14:8615,1986. Under the described conditions, only the 24-mer oligonucleotide (top strand) will covalently bond to the cDNA during the ligation reaction. The non-covalently bound adaptors (including the complementary 20-mer oligonucleotide described above and any unligated adaptors) were removed by gel filtration chromatography at 65 "C, leaving 24 nucleotide non-self-complementary overhangs on the cDNA termini.

The adaptored cDNA was inserted into adaptored pDC303, a mammalian expression vector that also replicates in E. coli. pDC303 was assembled from pDC201 (a derivative of pMLSV, previously described by Cosman et al., Nature 312: 768,1984), SV40 and cytomegalovirus DNA and comprises, in sequence with the direction of transcription from the origin of replication, the following components: (1) SV40 sequences from coordinates 5171 -270 containing the origin of replication, 1S enhancer sequences and early and late promoters; (2) cytomegalovirus promoter and enhancer regions (nucleotides 671-63 from the sequence published by Boechart et al. (Cell 41:521,1985); (3) adenovirus-2 from coordinates 5779-6079 containing the first exon of the tripartite leader (TPL), segment 7101-7172 and 9634-9693 containing the second exon and part of the third exon of the TPL and a multiple cloning site (MCS) containing sites for Xhol, Kpnl, Smal and BgH\ (4) SV40 segments 20 from coordinates 4127-4100 and 2770-2533 containing the polyadenylation and termination signals for early transcription; (5) adenovirus-2 sequences from coordinates 10532-11156 of the virus-associated RNA genes VAI and VAII of pDC201; and (6) pBR322 sequences from coordinates 4363-2486 and 1094-375 containing the ampicillin resistance gene and origin of replication.

The MP-1 cDNA library in pDC303 was introduced into E. coli strain DH10B by 25 electroporation. Recombinants were plated to provide approximately 5,000 colonies per plate. These recombinants were pooled to give a bulk stock of approximately 500,000 recombinants for screening. DNA was prepared from transformed bacteria and isolated by cesium chloride centrifugation.

EXAMPLE 4 Molecular Cloning of Human CD39 cDNA This example describes the isolation of a DNA molecule encoding CD39 from the expression cloning library described in Example 3.

A. Round I: Transfection and Immunoselection The isolated plasmid DNA was transfected into a sub-confluent layer of COS-7 cells using 35 DEAE-dextran and a chloroquine treatment substantially according to the procedures described in McMahan et al., EMBO J. 70:2821; 1991.

COS-7 cells were maintained in transfection and growth medium (Dulbecco's modified Eagles' medium containing 10% (v/v) fetal calf serum, 50 U/ml penicillin, 50 fig/ml streptomycin, 2 26 WO 00/23459 PCT/US99/22955 mM L-glutamine and 50 pg/ml gentamicin) and were plated to a density of approximately 1.5 x 10® cells in 10 ml transfection and growth medium in 10 cm dishes. Medium was removed from adherent cells growing in a layer to approximately 70% confluency, and replaced with 10 ml complete medium containing 66.5 jiM chloroquine. About 500 pl of a DNA solution (5 pg DNA, 0.5 mg/ml DEAE-5 dextran in transfection and growth medium containing 66.5 pM chloroquine) was added to the cells and the mixture was incubated at 37°C in 10 % CO2 for about five hours.

Following incubation, media was removed and the cells were shocked by addition of 5 ml transfection and growth medium containing 10% DMSO (dimethylsulfoxide) for 2.5 - 20 minutes. Shocking was followed by replacement of the solution with 10 ml fresh transfection and growth 10 medium. Twelve plates of cells were grown in culture for two to three days to permit transient expression of the inserted DNA sequences. The cells were trypsinized after about 24 hours of growth in order to remove them from the plates. After an additional one to two days, cells expressing CD39 were selected by panning, essentially as described in Example 2. The cells were incubated in the mAb 73 pan plates for two hours at room temperature, after which unbound cells were removed by gently 15 rinsing three times with PEA/FCS, then three times with PEA.

The cells that were not removed by rinsing were expressing CD39; cells expressing CD39 were lysed by the addition of 700 pl lysing buffer containing sodium dodecyl sulfate (SDS) and incubation for 20 minutes at room temperature. Lysates were transferred from each dish to individual microfuge tubes containing 100 pl of 5 M NaCl. The tubes were capped, mixed thoroughly by 20 inverting about 20 times, and stored at 4°C overnight. After overnight incubation at 4°C, high molecular weight DNA (debris) was removed by centrifugation, and 2 pg of glycogen was added to each supernatant. The supematants were then extracted twice with phenol/chloroform and once with chloroform/isoamyl alcohol. DNA was ethanol precipitated, washed with 80% ethanol, and vacuum dried. The purified DNA was then electroporated into E. coli, which were then plated out on 25 ampicillin plates. A large-scale transformation was carried out in this manner, yielding a total of approximately 48,000 colonies (sub-library 1). DNA was prepared from the colonies using CsCl; frozen stocks of the colonies were prepared at the same time.

B. Round IT. Electroporation and Immunoselection The DNA from sub-library 1 was electroporated into COS cells (10 x 10 cm plates). 30 Transfected COS cells were incubated, harvested and panned substantially as described for Round I above. DNA was isolated and a sub-library (sub-library 2) of approximately 50,000 independent colonies was prepared substantially as described above.

C. Round III: Electroporation and FACS Selection The DNA from sub-library 2 was electroporated into COS cells (10 x 10 cm plates). 35 Transfected COS cells were incubated and harvested substantially as described for Round I above. The harvested cells were analyzed by FACS substantially as described in Example 1 above. A small subpopulation of cells expressing CD39 was observed, and was sorted out from the larger mixture of 27 WO 00/23459 PCT/US99/22955 cells; DNA was isolated from the sorted cells. A sub-library (sub-library 3) of approximately 5,000 independent colonies was prepared. The DNA was pooled into 10 pools of approximately 500 colonies each; isolated DNA and frozen stocks of bacteria were prepared for each pool.

D. Round IV: Transfection and Immunoselection The DNA from sub-library 3 was transfected into COS cells using DEAE-dextran and chloroquine treatment, and incubated, substantially as described for Round I above, except that the cells were incubated on fibronectin-treated, chambered slides (10 slides, 1 for each pool, and 4 control slides) instead of 10 cm plates. After two days of growth, the cells were harvested as described, and analyzed by FACS substantially as described in Example 1 above, as well as by a slide dipping technique. In the slide dipping technique, the slides were incubated with 1 ^-labeled mAb 73 and fixed with glutaraldehyde. The results were determined by autoradiography using light microscopy to detect cell containing silver granules.

Two pools containing approximately 500 individual clones each were identified as potentially positive for production of CD39. The pools were titered and plated to provide plates containing an 15 average of approximately 150 colonies each. A replicate nitrocellulose filter was prepared from each plate; each plate was then scraped to provide smaller pools of plasmid DNA.

E. Round V: Transfection and Immunoselection COS-7 cells were transfected with the DNA from the smaller pools by DEAE-dextran, according to the same procedure described above. The transfected cells were screened by slide 20 dipping and FACS as described previously. Two of the smaller pools contained clones that were positive for CD39 as indicated by the presence of an expressed gene product that bound mAb 73.

A total of 156 colonies was picked from the replicate filter corresponding to one of the positive smaller pools, and inoculated into culture medium for overnight growth. After overnight growth, the cultures were arranged in a matrix format of 12 rows and 13 columns. Subpools of culture 25 medium were prepared by pooling medium from each row and each column for a total of 24 subpools. The subpools were used to prepare DNA for a final round of transfection and screening. An intersection of a positive row and a positive column indicated a potential positive colony One potential positive colony (i.e. clone) was identified.

A streak plate was prepared from the positive clone (clone 1), and minipreps of DNA were 30 made from nine individual colonies from the streak plate. The DNA was digested with Bgl II and analyzed by SDS-PAGE. Nine of nine individual colonies from clone 1 contained identical inserts of 1.8 - 2.0 Kb. A single isolate that contained the 1.8 - 2.0 Kb insert was picked and inoculated into 10 ml culture medium for overnight growth. DNA was prepared and sequenced by dideoxynucleotide sequencing. The nucleotide and deduced amino acid sequence of clone 1 is given in SEQ ID NO: 1. A 35 cloning vector containing human CD39 sequence, designated pCD39 was deposited with the American Type Culture Collection, Rockville, MD (ATCC) on September 29,1992, under the Budapest Treaty, and assigned accession number 69077. A murine homolog of CD39 was isolated by 28 cross-species hybridization; the amino acid sequence of the murine homolog is described in Maliszewski et al., J. Immunol. 153:3574,1994.

EXAMPLE 5 Preparation of CD39 mAbs This example describes the preparation of additional monoclonal antibodies against CD39, including antibodies against the region that contains apyrase activity. Preparations of purified CD39 fragments exhibiting ADPase activity, for example, or transfected cells expressing such CD39 polypeptides, are employed as immunogens to generate monoclonal antibodies against CD39 using 10 conventional techniques, such as those disclosed in U.S. Patent 4,411,993. DNA encoding CD39 fragments can also be used as an immunogen, for example, as reviewed by Pardoll and Beckerleg in Immunity 3:165, 1995. Such antibodies are useful for interfering with CD39-induced platelet aggregation, as components of diagnostic or research assays for CD39 or CD39 activity, and in affinity purification of CD39.

To immunize rodents, CD39 immunogen is emulsified in an adjuvant (such as complete or incomplete Freund's adjuvant, alum, or another adjuvant, such as Ribi adjuvant R700 (Ribi, Hamilton, MT), and injected in amounts ranging from 10-100 pg subcutaneously into a selected rodent, for example, BALB/c mice or Lewis rats. DNA may be given intradermally (Raz et al., Proc. Natl. Acad. Sci. USA 91:9519,1994) or intramuscularly (Wangetal., Proc. Natl. Acad. Sci. USA 90:4156,1993); 20 saline has been found to be a suitable diluent for DNA-based antigens. Ten days to three weeks days later, the immunized animals are boosted with additional immunogen and periodically boosted thereafter on a weekly, biweekly or every third week immunization schedule.

Serum samples are periodically taken by retro-orbital bleeding or tail-tip excision for testing by dot-blot assay (antibody sandwich), ELISA (enzyme-linked immunosorbent assay), 25 immunoprecipitation, or other suitable assays, including FACS analysis. Following detection of an appropriate antibody titer, positive animals are given an intravenous injection of antigen in saline. Three to four days later, the animals are sacrificed, splenocytes harvested, and fused to a murine myeloma cell line (e.g„ NS1 or preferably Ag 8.653 [ATCC CRL 1580]). Hybridoma cell lines generated by this procedure are plated in multiple microtiter plates in a selective medium (for example, 30 one containing hypoxanthine, aminopterin, and thymidine, or HAT) to inhibit proliferation of non-fused cells, myeloma-myeloma hybrids, and splenocyte-splenocyte hybrids.

Hybridoma clones thus generated can be screened by ELISA for reactivity with CD39, for example, by adaptations of the techniques disclosed by Engvall et al., Immunochem. 8:871,1971 and in U.S. Patent 4,703,004. A preferred screening technique is the antibody capture technique described 35 by Beckman et al., J. Immunol. 144:4212, 1990. Positive clones are then injected into the peritoneal cavities of syngeneic rodents to produce ascites containing high concentrations (>1 mg/ml) of anti-CD39 monoclonal antibody. The resulting monoclonal antibody can be purified by ammonium sulfate precipitation followed by gel exclusion chromatography. Alternatively, affinity chromatography based 29 WO 00/23459 PCT/US99/22955 upon binding of antibody to protein A or protein G can also be used, as can affinity chromatography based upon binding to CD39 polypeptide. An alternative strategy is to employ full-length CD39 immunogen, selecting for antibodies that bind CD39, and winnowing out those that bind to previously defined epitopes, for example by screening with a fragment of CD39 that represents a previously 5 defined epitope.

Monoclonal antibodies are also prepared by immunizing CD39 knockout mice, such as those described in Example 19D, with CD39 immunogen. Since the entire CD39 sequence is seen as "foreign" in the knockout mice, this strategy can lead to the generation of antibodies recognizing epitopes that are shared across species lines, including antibodies that antagonize or agonize CD39 10 bioactivity.

EXAMPLE 6 Physiological Activity of CD39 This example demonstrates that CD39 is the endothelial cell ecto-ADPase responsible for 15 inhibition of platelet function. Human umbilical vein endothelial cells (HUVEC) constitutively inhibit platelet responsiveness to prothrombotic stimuli by catabolism of exogenous platelet-derived ADP. The endothelial ecto-ADPase has been identified as CD39 (Marcus et al., /. Clin. Invest. 99:1351, 1997). Anti-CD39 antibodies immunoprecipitated ADPase activity from a preparation derived from endothelial membranes, and COS cells transfected with an expression vector comprising CD39 20 acquired ecto-ADPase activity whereas COS cells transfected with a control vector did not. Ecto-ADPase activity was measured in a manner similar to that described in Marcus et al., J. Clin. Investigation 88:1690, 1991, by conversion of l4C-ADP to AMP by transfectant monolayers as well as membrane preparations, and was greater than or comparable to activity of intact HUVEC monolayers and solubilized membranes 25 HUVEC mRNA was analyzed by RT-PCR using primer pairs derived from the sequence of the human CD39 lymphoid cell activation antigen with emphasis on its N-terminal portion. Lymphoid CD39 cDNA was used for direct comparison of PCR product sizes. The data demonstrated identity between HUVEC and lymphoid CD39 in the 4 fragments spanning the portion analyzed (approximately 1250 of the 1850 bp of lymphoid CD39). Northern blot analyses revealed that the 30 mRNA for CD39 in HUVEC was expressed in the same band pattern as in MP-1 cells, from which CD39 was originally cloned.

Confocal microscopy and fluorescence activated cell sorting, using mAb73, were used to determine if HUVEC cells expressed CD39. The FACS protocol was substantially as described in Example 1. For confocal microscopy, cells (human umbilical vein endothelial or transfected COS-t 35 cells) grown on coverslip glass were washed with PBS and fixed with 3% paraformaldehyde for 30 minutes at room temperature. Auto fluorescence was quenched by treatment with 50mM NH4CI for 10 minutes. Cells were then incubated in PBS containing 5% NGS (normal goat serum) plus 0.1 % triton X-100 to block non-specific binding and to permeabilize cells. Cells were then incubated with anti-CD39 antibody at 5 jjg/ml in PBS containing 5% NGS +0.1% triton X-100 for 1 hour at room temperature. Following three washes with PBS containing 5% NGS +0.1% triton X-100 ceils were incubated with goat anti-mouse labeled with Texas Red (Molecular Probes) at 5 pg/ml in addition to 10 mM YOYO (Molecular Probes) for nucleic acid counter stain, for 1 hour at room temperature.

S Cells were washed 3 times with PBS containing 5% NGS +0.1% triton X-100 and mounted in 100 mg/ml DABCO (1,4 diaxabicyclo [2.2.2] octane) (Sigma) in 50% glycerol. Cells were then viewed with Multiprobe 2001 laser scanning confocal microscope (Molecular Dynamics). One image was collected of CD39 staining (Texas Red) and a second image was collected of cell nuclei (YOYO).

Both the confocal microscopy and FACS experiments demonstrated that HUVEC express 10 CD39. The patterns of expression were similar to those seen in cells transfected with full-length human CD39.

The physiological activity of CD39 was illustrated by the ability of CD39-transfected COS cells to inhibit and completely reverse platelet aggregation by 10 juM ADP. CD39-transfected COS cells, as well as MP-1 cells and HUVEC, metabolized this quantity of ADP to AMP within three to IS four minutes and, when added to platelet rich plasma (substantially as described in Marcus et al., supra), they rapidly reversed platelet aggregation. This activity occurred within the time frame of platelet adhesion to injured subendothelium, a process leading to immediate ADP release, recruitment of additional platelets and formation of a hemostatic plug or thrombus. This time course paralleled platelet inhibition by CD39-expressing cells, and was commensurate with their ADPase activities. 20 The activity of ADPase/CD39 was independent of formation of other known thromboregulators, nitric acid or prostacyclin. These results demonstrate the importance of ADPase/CD39 as a physiological, constitutively expressed endothelial cell thromboregulator.

EXAMPLE 7 2S Phosphate Release Assay for ATPase Activity This example describes an ATPase assay that may be used to track enzyme activity. Samples (approximately 100 pl of either concentrated CM or purified polypeptide) are combined with 20 pl of 10X assay buffer (200 mM HEPES, 1.2 M NaCl, 50 mM KC1, 15 mM CaCl2,15 mM MgCU and 3 mM ATP) and sterile water is added to a final volume of 200 jil. Radiolabeled ATP (0.8 pCi y [32P] 30 ATP; Amersham, Arlington Heights, IL) is added and the mixture incubated for 20 minutes at 37°C. Stop mix (0.5 ml of 20% activated charcoal/1 M HC1) is added and the reaction is placed on ice for 10 minutes. After centrifugation (14K rpm for 10 minutes), the supernatant is assayed for free 32P using a scintillation counter. Data are expressed as raw counts or net counts, or as picomoles of ATP degraded per minute.

EXAMPLE 8 Binding Assay This example describes an assay to asses the binding of CD39 polypeptides to CD39 antibodies by biospecific interaction analysis (B1A) using a biosensor, an instrument that combines a 31 PCT/U S99/22955 biological recognition mechanism with a sensing device or transducer. An exemplary biosensor is BIAcore™, from Pharmacia Biosensor AB (Uppsala, Sweden; see Fagerstam L.G., Techniques in Protein Chemistry II, ed. JJ. Villafranca, Acad. Press, NY, 1§91). BIAcoreTM uses the optical phenomenon surface plasmon resonance (Kretschmann and Raether, Z Naturforschung, TeiL A 5 23:2135,1968) to monitor the interaction of two biological molecules. Molecule pairs having affinity constants in the range 10^ to 10^ M"', and association rate constants in the range of 1(P to 10^ M" h-K are suitable for characterization with BIAcore^M The biosensor chips are coated with CD39 antibody (e.g., mAb73). The different constructs of CD39 to be assessed are then added at increasing concentrations; the chip is regenerated between 10 the different constructs, for example, by the addition of sodium hydroxide. The resultant data can analyzed to qualitatively or quantitatively asses production of CD39 polypeptides. Affinity of the CD39 polypeptides for the CD39 antibodies can also be determined. In a similar manner, other monoclonal antibodies or polypeptides that specifically bind CD39 can be immobilized on a biosensor chip to asses the binding of various CD39 polypeptides.

EXAMPLE 9 Transient Expression of Soluble CD39 Polypeptides This example describes the preparation of constructs for the transient expression of soluble CD39 polypeptides.

A. Reagents Used The B73 mAb, a murine IgGl recognizing human CD39, was kindly provided by Dr. Guy Delespesse (U. Montreal, Quebec, Canada). The M2 mAb recognizing the FLAG® peptide (DYKDDDDK, SEQ ID NO; 10), a murine IgGl, was prepared at Immunex Corp. Affigel 10 (Bio-25 Rad, Hercules, CA) and CNBr-activated Sepharose 4B (Pharmacia Biotech, Piscataway, NJ) immunoaffinity columns were prepared according to manufacturers' instructions. Typically, coupling efficiencies in the range of 3-5 mg mAb per ml of affinity gel slurry were obtained.

B. Construction of a Soluble CD39 CsolCD39) Expression Plasmid To generate a soluble molecule having the properties of CD39 the N-terminal and C-terminal portions of CD39, including the two transmembrane regions (see Fig. 2), were removed. To allow transport of soluble CD39 into the medium, a leader sequence providing for secretion was added at the amino terminus of the polypeptide.

Constructs of soluble human CD39 (solCD39) were made in the mammalian expression 35 vector pDC206 (Kozlosky et al. Oncogene. 10:299, 1995), utilizing human IL2 (huIL2), human growth hormone (huGH) and murine IL7 (muEL7) leaders). 32 WO 00/23459 PCT/US99/22955 The DNA sequences between the putative transmembrane regions of full-length CD39, including nucleotides 178-1494 of SEQ ID NO:l, were amplified using PCR and the C-terminal transmembrane coding region was replaced with a stop codon. The PCR product was fused to a synthetic DNA fragment encoding an 8 amino acid peptide tag (FLAG®) and ligated with a muIL7 5 leader (muIL7L) into the plasmid pDC206 vector via Spel and Bgl2 restriction sites. This construct encoded N-terminally FLAG-tagged solCD39.

Alternate leaders were introduced by ligating the Spel/Bgl2 FLAG-solCD39 fragment into two different pDC206 plasmids, with leaders derived from: (1) human growth hormone (huGHL), and (2) a human proinsulin/IL2 fusion polypeptide (huIL2L, Cullen, DNA. 7:645,1988). The coding 10 region of the latter construct, which is shown in SEQ ID NOs:25 and 26, includes sequences encoding the hnTI .7 leader (huIL2L, nucleotides 1-72, amino acids 1-24 in SEQ ID NO:25), the first 12 amino acids of mature human IL2 (nucleotides 73-108, amino acids 25-36 in SEQ ID NO:25), a four amino acid linker (nucleotides 109-120, amino acids 37-40 in SEQ ED NO:25), the FLAG tag (nucleotides 121-144, amino acids 41-48 of SEQ ID NO:25), and sol CD39 (nucleotides 145-1461, amino acids 49-15 487 of SEQ ID NO:25).

The constructs comprising the muIL7 leader, the human growth hormone leader, and the human proinsuIin/DL2 leader were designated pIL7IJHagSolCD39, pGHLFlagSolCD39, and pIL2LFlagSolCD39 respectively.

Each construct was used to transiently transfect subconfluent layers of COS-1 cells using 20 DEAE dextran followed by chloroquine as described by Cosman et al.. Nature 312:768,1984. As a negative control, a CD40 ligand construct (pI12LCD401ig, Spriggs et al., J. Exp. Med. 176:1543, 1992) was also transfected into COS-1 cells.

C. Preparation of Conditioned Medium from solCD39 Transfectants 25 The transfected COS-1 cells were incubated (37°C, 5% CO2) in 0.5% FCS-suppIemented DMEM-F12 medium in 10 cm2 Petri dishes or 175 cm2 tissue culture flasks. After 5 days, conditioned medium (CM) from these cultures was collected, and cells and debris were removed by centrifugation. The CM was concentrated 4-10 fold using a pressurized, stirred cell fitted with a YM-10 (10 kD cutoff) membrane (Amicon Corp., Danvers, MA).

D. ATPase Activity in Conditioned Medium from solCD39 Transfectants ATPase activity in the CM from solCD39 transfectants (100|iLof 10-fold concentrated supernatant) was assayed essentially as described in Example 7, except that the 10X assay buffer contained 30 mM cold ATP. The results are shown in TABLE 1.

The transfections were repeated and the CM (10,20 and 30 |iL, unconcentrated) was assayed 35 essentially as described in Example 7. The results are shown in TABLE 2. Because the pIL2LFlagSolCD39 showed higher ATPase activity in COS-1 supematants than pIL7LFlagSolCD39 and pGHLFlagSolCD39, this construct was selected for further investigation. ATPase levels in CM 33 PCT/U S99/22955 from COS-1 cells transfected with pIL2LFlagSolCD39 increased with time in culture over at least 4 days post-trarisfection.

TABLE 1 ATPase Activity in Concentrated CM from solCD39 Transfectants Sample CPM Release x 103 (raw counts) plL2LFlagSolCD39 99.96 pIL7LFlagSolCD39 • 39.47 pGHLFlagSolCD39 21.14 pIL2LCD401ig .53 media only 7.89 TABLE 2 ATPase Activity in CM from solCD39 Transfectants Sample Vol (nL) CPM Release x 10"* (net counts) pEL2LFlagSolCD39 24.71 43.92 56.93 pIL7LFlagSoICD39 .01 9.75 14.23 pGHLFlagSolCD39 .51 7.22 9.95 E. Immunoaffinity Depletion of solCD39 from COS-1 CM To confirm that recombinant solCD39 accounted for the ATPase activity observed in the CM, CM from COS-1 transfectants was incubated with immunoaffinity beads prior to enzyme assay.

CM was collected from COS-1 cells transfected with pIL2LFlagSo!CD39, which had been cultured for 5 days in DMEM/F12 supplemented with 5% FCS. A 100 pl aliquot of drained Affigel 15 beads (AG) conjugated with either chicken ovalbumin, antiFLAG mAb, or anti-CD39 mAb was added per ml of CM. CM was subjected to one or two cycles of binding with one of the following: ovalbumin-conjugated AG, M2 mAb-conjugated AG, or B73 mAb-conjugated AG. Each cycle involved continuous gentle agitation of the slurry for 14 h at 4°C followed by centrifugation to recover supematants for a subsequent binding cycle or for ATPDase activity measurements. 20 As shown in Fig. 3, immunoprecipitation with anti-CD39 mAb-conjugated beads resulted in removal of over 80% of ATPase activity from CM. Over 95% ATPase activity was removed with a second antibody adsorption step. Immunoprecipitation (2 cycles) with anti-FLAG mAb-coated beads also resulted in substantial depletion of enzyme activity. Two rounds of preincubation with a control (ovalbumin-conjugated beads) did not remove significant ATPase activity from the supematants. 34 WO 00/23459 PCT/US99/22955 F. Immunoprecipitation of Recombinant solCD39 To characterize recombinant solCD39 polypeptide expression, COS-I cells were transfected with mammalian expression vectors encoding cell surface CD39 (pHuCD39, Marcus et al., J. Clin. Invest. 99:1351,1997), tagged soluble CD39 (pEL2LFlagSolCD39), or soluble CD40 ligand (pIL-2L-5 CD40L) and grown in 5% FCS-supplemented DMEM/F12 medium in 10 cm2 dishes. Two days after transfection, the medium was replaced with Cys/Met-free medium and cells were incubated for 1 h at 37°C. The culture medium was replaced with fresh Cys/Met-free medium supplemented with 5 pl of [35S)-Cys/Met (Amersham, Arlington Heights, IL) in order to label newly synthesized polypeptides, and cells were cultured for 5 h at 37°C. CM from the metabolically radiolabeled cells was collected, 10 purified of cells and debris by centrifugation and sterile filtration, and stored at 4°C until further use.

For radioimmunoprecipitation, 500 pl of 35S-labeled CM was added to 250 pl of 3% BSA in Tris-buffered saline (TBS), pH 7.7, followed by addition of 50 pl of a 80% slurry of mAb-coated AG beads. In some cases, 35S-labeled CM were incubated with ovalbumin-coated AG beads to remove nonspecifically binding materials prior to addition of Ab-coated beads. After incubation for 14 h at 15 4°C, beads were removed by centrifugation and washed three times in cold TBS.

For SDS-PAGE analysis, 35 pl of 4-fold concentrated reducing sample buffer (250 mM Tris/HCl, pH 6.8, 8 % (w/v) SDS, 40 % (v/v) glycerol, 20% (v/v) 2-mercaptoethanol, 0.05% bromophenol blue dye) was added to each AG pellet, boiled for 5 min, and loaded onto a 8-16% Novex (San Diego, CA) polyacrylamide gel. Gels were electrophoresed at 25 mA, prepared for 20 autoradiography by soaking in Enhance (NEN Life Science Products, Boston, MA) for 1 h and in H2O for 20 min, followed by vacuum drying at 80°C. Gels were exposed to Kodak (Rochester, NY) X-omat AR film for 2 h, then developed.

As shown in Fig. 4, IL-2L-FlagsolCD39 transfectants secreted a radiolabeled protein of -66 kD that was recognized by anti-CD39. This protein was not detected in anti-CD39 25 immunoprecipitated CM from COS-1 cells transfected with a vector encoding full-length CD39 (including N-terminal and C-terminal hydrophobic regions), or with a vector encoding a secreted protein, CD40 ligand. Anti-FLAG mAb immunoprecipitated a similar-sized band from CM of the pIL-2L FlagsolCD39 transfectant, consistent with the presence of the FLAG® peptide in recombinant so!CD39. Preclearing radiolabeled culture supematants with anti-ovalbumin-coated beads failed to 30 remove the 66 kD band, indicating that binding to anti-CD39 and anti-FLAG was specific. Beads coated with an irrelevant, isotype matched control antibody failed to immunoprecipitate the 66 kD band from solCD39 containing CM.

G. Preparation of Additional solCD39 Fusion Constructs Restriction enzymes were used to prepare a DNA fragment comprising nucleotides 1 through 1488 of SEQ ID NO:l, the coding region of which would be expected to encode a fragment of CD39 lacking the second (most C-terminal) transmembrane domain. Appropriate linker oligonucleotides WO 00/23459 PCT/US99/22955 were prepared (SEQ ID NOs: 14 and 15), and used in a three-way ligation of the CD39 DNA, the linker oligonucleotides, and an expression vector comprising regulatory elements allowing expression of a resulting fusion polypeptide in mammalian cells along with DNA encoding a mutated human immunoglobulin Fc (SEQ ID NOs: 16 and 17) region that exhibits reduced affinity for Fc receptors 5 (nucleotides 42 through 740 of SEQ ID NO: 16). This construct was referred to as CD39A2Fc, and when transfected into cells resulted in the expression of a fusion polypeptide comprising amino acids 1 through 474 of SEQ ID NO:l and amino acids 1 though 232 of SEQ ID NO: 17, which could be detected on the surface of transfected cells using either anti-CD39 or anti-human IgG.

A PCR technique was employed to prepare a fragment of DNA from the CD39A2Fc construct 10 that also lacked the first, most amino-proximal transmembrane region, but included CD39 DNA from nucleotides 181 through 1488 (amino acids 39 through 474) of SEQ ID NO:l and the Fc mutein DNA from CD39A2Fc (using the linkers shown in SEQ ID NOs: 18 and 19).

The resulting DNA was then ligated into an expression vector that included DNA encoding the murine Interleukin-7 leader sequence (SEQ ID N0:20) ligated immediately proximal to the CD39-15 encoding sequence. This construct was designated CD39Al,A2Fc.

DNA encoding the FLAG® peptide (SEQ ID NO: 10) and a codon corresponding to nucleotides 178, 179 and 180 of SEQ ID NO: 1 was inserted into the CD39A1 ,A2Fc construct, in between the leader sequence and the CD39-encoding sequence, to provide a detectable tag for the amino terminus of the fusion polypeptide (using the linkers shown in SEQ ID Nos:21 and 22). The 20 tagged construct was referred to as FlagCD39Al ,A2Fc.

Another construct was prepared that removed the Fc mutein sequences, and added codons corresponding to nucleotides 1489 through 1494 of SEQ ID NO:l immediately downstream of the CD39 sequences (using the linkers shown in SEQ ID Nos:23 and 24). This construct was designated FlagCD39Al,A2.

Each of the constructs was transfected into mammalian cells and protein levels were assayed on the surface, in the interior, or in the supernatant fluid of transfected cells using antibodies to FLAG®, CD39, or human IgG.

EXAMPLE 10 Expression and Activity of pIL2LSolCD39 To facilitate the establishment of a stably producing transfectant in CHO cells, an untagged version of soluble human CD39 (solCD39) was constructed. A 523 bp Spel/Ndel fragment containing the FLAG® tag and the first 163 amino acids (aa) of pIL2LFlagSolCD39 was removed, and replaced with a similar fragment from a C-terminally FLAG®-tagged solCD39. Thus the entire 35 solCD39 coding region was reconstituted, sans FLAG®, while retaining the HuIL2 leader and mature IL2 residues. This construct was designated pIL2LSolCD39. The coding region of pIL2LSolCD39, 36 WO 00/23459 PCMJS99/22955 which is shown in SEQ ID NO:7, includes sequences encoding the huIL2 leader (huIL2L, nucleotides 1-72, amino acids 1-24 in SEQ ID NO:7), the first 12 amino acids of mature human IL2 (nucleotides 73-108, amino acids 25-36 in SEQ ID NO:7), a three amino acid linker (nucleotides 109-117, amino acids 37-39 in SEQ ID NO:7), and sol CD39 (nucleotides 118-1434, amino acids 40-478 of SEQ ID 5 NO:7).

To determine whether activity was affected by removal of the N-terminal FLAG® tag, COS-1 cells were transfected with pIL2LFlagSolCD39 and pIL2LSolCD39 and supematants (sups) were harvested after 5 days. Samples of 10,20 and 30 fxL of lx sups were assayed for ATPase activity as described in Example 7. As shown in TABLE 3, activity was not affected by removal of the N-10 terminal FLAG® tag.

TABLE 3 ATPase Activity in CM from pIL2LFlagSo!CD39 and pIL2LSolCD39 Transfectants Sample Vol (HL) CPM x 10J (net counts) pIL2LFlagSolCD39 23.6 40.2 54.4 pEL2LSolCD39 .1 36.0 51.0 EXAMPLE 11 Preparation of Additional solCD39 Fusion Constructs A. Preparation and Characterization of Triml and Trim2 Variants To characterize the effect of the 12 mature human IL2 (huIL2) residues on the expression of solCD39, the huIL2 residues were removed during the construction of nucleic acid sequences 20 encoding two additional variants of pIL2LSolCD39: pIL2LTriml ("Triml") and pIL2LTrim2 ("Trim2").

The pIL2LTriml variant was constructed by purifying a Hind3/Bgl2 restriction fragment from pIL2LSolCD39 which contained the entire solCD39 coding region except for the first four amino acids. This fragment was ligated with a synthetic oligo cassette (containing the huIL2 leader and the 25 first amino acid of mature huIL2) into Smal/Bgl2 digested pDC206. The huIL2 leader was thus reintroduced and joined to solCD39 with an intervening alanine residue.

The pIL2LTrim2 variant was constructed in a similar fashion using a Spel/Bgl2 fragment from pH2LSolCD39 and a synthetic oligo cassette containing the huIL2 leader and the linker-encoded sequences (with the first codon altered to alanine). Thus, the huIL2 leader was restored with an 30 intervening Ala-Ser-Ser linker preceding solCD39.

The N-terminal portions of the pIL2LSolCD39, pIL2LTriml and pIL2LTrim2 polypeptides are compared below, with the predicted cleavage points indicated as *: 37 pIL2LSolCD39 (SEQ ED NO: 11) MALWIDRMQLLSCIALSLALVTNS*APTSSSTKKTQLts sT QNK... pIL2LTrim 1 (SEQ ID NO: 12) MALWIDRMQLLSCIALSLALVTNS A T*QNK... pIL2LTrim2 (SEQ ID NO:13) MALWIDRMQLLSCIALSLALVTNS as*sT QNK...

The polypeptide encoded by the Triml construct has the sequence SEQ ID NO:27. Residues 26-464 are a soluble portion of CD39 and the cleavage of the leader sequence is between Ser24 and Ala25.

The expression of Triml and Trim2 constructs was analyzed in COS-1 cells cultured in 10 cm 15 plates. After 5 days of incubation, lx supematants were examined via ELISA (using anti-CD39) and the phosphate-release assay described in Example 7. As shown in TABLE 4, the specific activities (based on concentrations determined by ELISA) of Triml and Trim2 were equivalent to pIL2LFlagSolCD39. Expression levels, however, appeared to be reduced 3-4 fold.

' TABLE4 SolCD39 Expression and Activity in CM from pIL2LSolCD39 an Trim Transfectants Sample [CD39] jig/mL Activity (pmol ATP/min/fig) x 103 pIL2LSolCD39 0.75 .67 pIL2LTriml 0.21 8.38 pIL2LTrim2 0.21 6.67 COS-1 cells were also transfected with pIL2LSo!CD39, pIL2LTriml and pIL2LTrim2 and cultured in T17S flasks (30 mL). S-day/lx sups were then analyzed via ELISA. As shown in TABLE 25 5, the ELISA results again indicated lower expression levels for the Triml and Trim2 variants.

To further characterize the effect of the human IL2 (huIL2) residues on the expression of solCD39, the pEL2LSolCD39, pIL2LTriml, and pIL2LTrim2 products were purified using anti-CD39 coated sepharose. The N-terminal amino acid sequence was determined for each of the purified polypeptides. For solCD39 the N-terminus was APTSSSTKKT. . . (residues 25-34 of SEQ ID 30 NO:l 1). For Triml the N-terminus was ATQNKALPEN... (residues 25-34 of SEQ ID NO:27). The Trim2 polypeptides had heterogeneous N-termini- TABLE5 SolCD39 Expression in CM from pIL2LSolCD39 and Trim Transfectants Sample [CD39] (ig/mL pIL2LSolCD39 pEL2LTriml pIL2LTrim2 0.796 0.143 0.113 38 WO 00/23459 PCT/US99/22955 B. Preparation and Characterization of Trim3 and Trim4 Variants Nucleic acids encoding additional solCD39 variants, designated pDL2LTrim3 ("Trim3") and pIL2LTrim4 ("Trim4"), are also constructed using a synthetic oligo cassette strategy. The N-terminal portions of the solCD39, Trim3 and Trim4 polypeptides are compared below. The predicted cleavage 5 points are indicated as *. pIL2LSolCD39 MALWIDRMQLLSCIALSLALVTNS*APTSSST KKTQLtssTQNK. - . (SEQIDNOMl) pIL2LTrim3 MALWIDRMQLLSCIALSLALVTNS*A ST KKTQLtssTQNK. . . 10 (SEQ ID NO:28) pIL2LTrim4 MALWIDRMQLLSCIALSLALVTNS ST*KKTQLtssTQNK. . .

(SEQ ID NO:29) The polypeptide encoded by the Trim3 construct has the sequence SEQ ID NO:28. Residues 15 36-474 are a soluble portion of CD39 and the predicted cleavage of the leader sequence is between Ser24 and AIa25. The polypeptide encoded by the Trim4 construct has the sequence SEQ ED NO:29. Residues 35-473 are a soluble portion of CD39 and the predicted cleavage of the leader sequence is between Thr26 and Lys27.

The pEL2LTrim3, and pIL2LTrim4 polypeptides are expressed and purified using anti-CD39 20 coated sepharose. The N-terminal amino acid sequence and specific activity are determined for each of the polypeptides.

C. Preparation and Characterization of so1CD39-L4 Fusion Polypeptides The CD39 gene family is reported to contain at least four human members: CD39, CD39L2, 25 CD39L3, and CD39L4 (Chadwick and Frischauf, Genomics 50:357,1998). CD39-L4 is reported to be a secreted apyrase (Mulero et al., J. Biol. Chem. 274(29):20064, 1999). Additional solCD39 variants are constructed by fusing N-terminal sequences from CD39L2, CD39L3, or CD39L4 to a soluble portion of CD39. The N-terminal amino acid sequences of human CD39 and human CD39-L4 are aligned in Fig. 24.

For one construct, CD39-L4-1, a nucleic acid encoding CD39-L4 amino acid residues 1-37 (Metl to Ser37 of SEQ ID NO:31) is fused to a nucleic acid encoding CD39 residues 38-476 (Thr38 to Thr476 of SEQ ID NO:2). The polypeptide encoded by the CD39-L4-1 construct has the sequence SEQ ID NO:3. Residues 1-37 are from CD39-L4, residues 38-476 are a soluble portion of CD39, and the predicted site of cleavage of the leader sequence is between Ala20 and Val21. 35 For another construct, CD39-L4-2, a nucleic acid encoding CD39-L4 amino acid residues 1- 48 (Metl to Leu48 of SEQ ID NO:31) is fused to a nucleic acid encoding CD39 residues 49-476 (Tyr49 to Thr476 of SEQ ID NO:2). Another construct, CD39-L4-3, is identical to CD39-L4-2 except that the Cys residue at position 39 (Cys39) is replaced by another amino acid, preferably Ser. The polypeptides encoded by the CD39-L4-2 and CD39-L4-3 constructs have the sequence SEQ ID NO:4. 39 Residues 1 -48 are from CD39-L4, residues 49-476 are a soluble ponion of CD39, and the predicted site of cleavage of the leader sequence is between Ala20 and Val21.

Additional constructs are constructed by fusing a portion of the CD39-L4 N-terminal coding region to the CD39 N-terminal coding region. After expression in recombinant cells, the N-terminal 5 sequence, enzymatic activity, and platelet inhibitory activity is determined for each of the polypeptide products.

D. Preparation and Characterization of IgkappaLsolCD39 Nucleic acids encoding an Igkappa leader sequence fused to amino acids from IL-2 and to 10 solCD39 are also constructed. One such construct encodes a polypeptide having an Igkappa leader and four amino acids from IL-2 fused to the N-terminus of the CD39 soluble portion (set forth as residues Thr38 to Thr476 of SEQ ID NO:2). The N-terminus of the encoded polypeptide is therefore: 5'-METDTLLLWVLLLWVPGSTG*APTSTQNKALPE .... (amino acids 1-32 of SEQ ID N0:30), where amino acids Metl-Gly20 are the Igkappa leader, AIa21-Ser24 are from IL-2, and Thr25-Glu32 IS is the beginning of solCD39 sequences. The predicted cleavage site is indicated as *. The polypeptide encoded by the IgkappaLso!CD39 construct has the sequence SEQ ID N0:30. Residues 25-463 are a soluble portion of CD39 and the predicted cleavage of the leader sequence is between Gly20 and Ala21. After expression in recombinant cells, the N-terminal sequence, enzymatic activity, and platelet inhibitory activity is determined for each polypeptide product.

EXAMPLE 12 Development of a Stably Transfected Cell Line Secreting solCD39 A CHO cell line expressing solCD39 was generated to improve recombinant solCD39 polypeptide production.

A. Preparation of Constructs and Cell Lines for the Stable Expression of Soluble CD39 Polypeptides The solCD39 cDNA insert, containing the recombinant solCD39 sequence and the IL-2 leader but not the FLAG® sequence, was excised from the plL2LSolCD39 plasmid by Xmal/BelH digestion, then inserted into 2A5Ib, an expression vector containing the DHFR gene and optimized for stable 30 CHO cell lines (Morris et al., In Animal Cell Technology: From Vaccines to Genetic Medicine, M.J.T. Carrondo, B. Griffiths, and J.L.P. Moreira, editors, Kluwer Academic Publishers, Boston. 529-534, 1997).

The solCD39-2A5Ib plasmid was transfected into CHO cells using Lipofectamine (GIBCO BRL; Gaithersburg, MD) according to manufacturer's recommendations. The CHO cell line used in 35 these studies, DX B-l 1, had been adapted to serum-free suspension culture conditions. Transfected cells were grown in modified DMEM-F12 medium, supplemented with peptone, glutamine, glucose, transferrin, lipids, and IGF-1 (insulin-like growth factor 1; used solely when cultures were induced for protein expression). After 3 days growth, the cells were transferred to selective medium lacking 40 hypoxanthine and thymidine. Stock cultures were grown at 37°C in suspension, and passaged every 2-3 days. Induction cultures were grown at 31°C in suspension, with IGF-1 and sodium butyrate (1-2 mM). Cell density at start of induction cultures was 1.5-2xl06 cells/ml. The average induction period was 7 days, at which time CM was collected for further analyses.

B. TLC Assays for ADPase and ATPase Activities in CM Containing solCD39 Following growth in selective medium, CM from CHO cell cultures was analyzed for ATPase and ADPase activities. ADPase assays (Marcus et al., J. Clin. Invest. 88:1690, 1991) were primarily used in determining enzyme kinetics and pharmacokinetics. Test samples were incubated with 50 fiM 10 [14C] ADP (NEN Life Science Products) in assay buffer (15 mM Tris, 134 mM NaCl, 5 mM glucose, pH 7.4, containing 10 jjM Ap5A (P',P5-di[adenosine-5']pentaphosphate, 1 mM ouabain, 10 jiM dipyridamole, and 3 mM CaCl2) in a total volume of 50 |il (5 min, 37°C). Reactions were stopped by placement on ice and addition of 10 |iil "stop solution" (160 mM disodium EDTA, pH 7.0,17 mM ADP, 0.15 M NaCl) to block further metabolism of ADP. Nucleotides, nucleosides, and bases were 15 separated by TLC using isobutanol/l-pentanol/ethylene glycol monoethyl ether/NH40H/H20 (90: 60: 180: 90:120). Radioactivity was quantified by radio TLC scanning (RTLC multiscanner; Packard, Meriden, CT). Results were calculated as averages of duplicate to quadruplicate measurements after subtraction of buffer blanks (consistently <1% of total radioactivity). Data were expressed as percentage of ADP metabolized or as pmol ADP metabolized per minute per pi CM. A unit of 20 activity is the quantity of enzyme which will degrade 1 nmol of ADP in 1 min at 37°C. Identical assays were performed using ATP as a substrate in order to examine the kinetics of the ATPase activity of CD39.

As shown in TABLE 6, the stably transfected CHO cells secreted 20-fold higher levels of both enzyme activities compared to CM from transfected COS-1 cells.

TABLE 6 Comparison of ADPase and ATPase Activities in CM Containing solCD39 Cell Type ADPase (pmol/min/pl) ATPase (pmol/min/nl) CD39 (CHO) CD39 (COS-1) 1403 70 970 44 C. Affinity Purification of solCD39 from Stablv Transfected CHO Cells 30 Thirty ml of 10-fold concentrated CM from solCD39-secreting CHO cells was added to 3 ml of B73 mAb-coated Sepharose 4B gel slurry and mixed overnight at 4°C. The affinity matrix was pelleted by centrifugation, washed 3 times with PBS, and added to a plastic column. Specifically-bound protein was eluted by the addition of 0.1 M triethylamine, pH 11.5. Fractions (1.2 ml each) were collected in tubes containing 120 pl of neutralizing solution (1 M sodium phosphate, monobasic; 35 pH 4.3) and analyzed for protein content by SDS-PAGE, followed by Coomassie Blue staining. 41 WO 00/23459 PCT/US99/22955 Biological activity was determined using an ATPase assay as described in Example 7, so that peak fractions could be pooled, buffer exchanged into PBS, and concentrated 5-fold. N-linked sugars were removed from purified protein using a kit from Oxford Glycosystems (Rosedale, NY). The recombinant solCD39 was analyzed by SDS-PAGE.

A prominent band of ~66 kD was present in early eluted fractions, with a peak of Coomassie Blue staining around fraction 5 (Fig. 5A). Over 90% of the protein present was found as this major band. Overloading the polyacrylamide gel did reveal some smaller molecular weight contaminants, however, these appear to be related to the antibodies present on the column and not to the protein loaded on the column.

ATPDase activity of the affinity column fractions correlated with the intensity of protein bands on SDS-PAGE (Fig. 5A, 5B). ATPDase activity was barely detectable in the anti-CD39 column flowthrough, indicating that affinity purification is an effective means of isolating biologically active recombinant solCD39. Treatment of the purified protein with N-glycanase for 18 hours to remove N-linked oligosaccharides caused the broad band of protein at 66 kD to resolve into a much 15 tighter band of protein at approximately 52 kD, the predicted size for solCD39 (Fig. 5C).

The total protein yield from 1 L of CHO-solCD39 CM was -2 mg. Production of solCD39 was scaled up to 10 liter bioreactors. The resultant conditioned medium contained approximately 50-100 (ig/ml of solCD39 according to ELISA analysis. Thus, each 10 L bioreactor run would expected to produce 500-1000 mg of recombinant polypeptide. CHO cell lines expressing additional solCD39 20 constructs are similarly prepared and characterized.

EXAMPLE 13 Expression of solCD39 in Veggie-CHO and CS-9 Cells In this example, soluble CD39 is expressed in CHO cells that have been adapted to grow in 25 suspension in media that does not contain animal proteins (see Rasmussen et al., Cytotechnology 28:31,1998), or in the presence of IGF-1 in the clonal cell line CS-9.

The dihydrofolate reductase-deficient Chinese hamster ovary cell line, DXB11-CHO is commonly used as a host cell for the production of recombinant polypeptides. DXB11-CHO was adapted to grow in suspension. A serum-free host named Veggie-CHO was then generated by 30 adapting DXB11 -CHO cells to growth in serum-free media in the absence of exogenous growth factors such as Transferrin and Insulin-like growth factor (IGF-1). The latter adaptation was achieved by a gradual reduction of serum supplementation in the media and the replacement of serum with low levels of growth factors, IGF-1 and transferrin, in an enriched cell growth media. The suspension adapted serum-free adapted cells were then weaned off these growth factors. The resulting Veggie-35 CHO cells maintain vigorous growth and high viability as well as a DHFR-deficient phenotype in media that is serum-free and also free of animal-derived proteins. CS-9 cells were also derived from DXB 11-CHO cells. The suspension adapted serum-free adapted cells were adapted to grow in the 42 absence of transferrin, then individual clones were isolated. The CS-9 clone was chosen for its stable recombinant protein expression.

Veggie-CHO cells and CS-9 cells are used as a host cell line for the stable, high level expression soluble CD39 polypeptides using methods similar to those described in Example 12.

EXAMPLE 14 Biochemical Properties of Affinity-Purified so)CD39 Purified solCD39 material was subjected to N-terminal amino acid sequencing and mass spectroscopy. Quantitative amino acid analysis of peak fractions (3-9) from the affinity column yielded a ratio of amino acid residues consistent with calculated values for human CD39. The N-terminus of the pEL2LSolCD39 product had the following sequence: APTSSSTKKTQLtssTQ... (residues 25-41 of SEQ ID NO: 11).

The first 12 residues represent the mature huIL2 residues; residues 13-15 (tss, lower case) are linker-encoded residues; residues 16,17, etc. (T Q...) are solCD39.

Using the TLC assay system described in Example 12B, the ADPase activity of the membrane-bound HUVEC ecto-ADPase was determined at different pHs in buffers containing 100 mM bis-trispropane (Sigma, St. Louis, MO). This was compared to the ADPase activity of purified solCD39 at these pHs. Kinetic constants for CD39 metabolism of ATP and ADP were determined by measuring the initial rates of reaction as analyzed in the TLC system. ADP or ATP at 2.5-150 pM were incubated separately with 2xl0'9 M solCD39.

As shown in Fig. 6A, the pH optima for the ecto-ADPase on the surface of HUVEC and for affinity-purified recombinant solCD39 ADPase activities were between pH 8 and 8.5. This indicated that recombinant solCD39 would be maximally active under the same physiological conditions as native CD39/ecto-ADPase.

Initial rates of ATP and ADP metabolism by recombinant solCD39 were determined as shown in Fig. 6B, and kinetic constants were derived. The Km and V^ for ADP were 5.9 |iM and 72 pmol/min, respectively; for ATP a Km of 2.1 |jM and v.™, of 26 pmol/min were determined. The assays were performed with 2xl0"9 M solCD39, yielding krat of 720 min"1 (ADP) and 260 min"1 (ATP). Thus, the specificity constant, k^/Km (1.2x10s min"1 M'1), was identical for ADP and ATP. The specific activity for purified recombinant solCD39 was 11 U/mg for ADP and 4 U/mg for ATP.

EXAMPLE 15 Platelet Inhibitory Properties of soICD39 This example shows that recombinant affinity purified solCD39 is effective as an inhibitor of platelet activation and recruitment.

After obtaining informed consent from volunteers, blood was collected via plastic tubing using acid citrate-dextrose (38 mM citric acid; 75 mM sodium citrate; 135 mM glucose) as 43 anticoagulant. Where indicated, volunteers had ingested 650 mg acetylsalicylic acid (ASA) 18 h prior to blood donation. Platelet-rich plasma (PRP) was prepared with an initial whole blood centrifugation (200g, 15 min, 25°C), and a second centrifugation of the PRP (90 g, 10 min) to eliminate residual erythrocytes and leukocytes. The stock suspension of PRP was maintained at room temperature under 5 5% C02-air.

A. Platelet Aggregation Studies PRP containing 1.22x10s platelets was pre-incubated (3 min, 37°C) in an aggregometer cuvette (Lumiaggregometer; Chrono-Log, Havertown, PA) alone or in combination with test samples 10 containing soICD39. Total volumes were adjusted to 300 pl with TSG buffer (Marcus et al., J. Clin. Invest. 88:1690,1991; Marcus et al., J. Clin. Invest. 99:1351, 1997). After the 3 min preincubation, platelet agonists (ADP or collagen) were added at the concentrations indicated, and the aggregation response recorded for 4-5 min. Where indicated, 10 (iM indomethacin (Sigma, St. Louis, MO) was added to PRP to inhibit endogenous cyclooxygenase activity.

As shown in Fig. 7, the addition of 10 nM ADP to PRP alone resulted in a full, irreversible aggregation response; partially reversible aggregation occurred at lower ADP concentrations. However, in the presence of only 3.3 pg/ml solCD39, platelet aggregation induced by 10 |iM ADP was abruptly terminated and the curve rapidly returned to baseline. Importantly, the extent of aggregation was reduced to levels below those observed with 1 pM ADP. Higher concentrations of 20 solCD39 had an even more profound inhibitory effect, virtually eliminating the initial burst of aggregation elicited by 10 pM ADP.

Platelet responsiveness to 5 pM ADP was examined in PRP treated with and without the cyclooxygenase inhibitor indomethacin (10 pM), in the presence of CM containing solCD39 from COS-1 and CHO cells. As shown in Fig. 8A, indomethacin treatment resulted in partial reversal of 25 ADP-induced platelet aggregation in the absence of solCD39. In contrast, CM containing solCD39 were capable of completely abrogating platelet responses to ADP, whether PRP was indomethacin-treated or not.

Inhibition of platelet reactivity by CD39 was not limited to blocking the agonistic effects of ADP, as shown in Fig. 8B and 8C. Collagen, which is another critical platelet agonist, was used at 1 30 (Jg/ml to induce platelet aggregation. The presence of solCD39 markedly reduced the response to collagen compared to control (Fig. 8B, upper curves). A similar inhibitory effect of solCD39 was observed in PRP treated with indomethacin (Fig. 8B, lower curves), when collagen was used at 3.3 (jg/ml. As shown in Fig. 8C, the effect of so!CD39 on collagen-induced aggregation was dose dependent.

B. Inactivation of Enzymatic Activity of solCD39 and the Effect on Inhibition of Platelet Activation To demonstrate that the ability of solCD39 to inhibit platelet activation and recruitment was due to the enzymatic activity of so!CD39 and not to some other property, the solCD39 was reacted 44 with FSBA (Fluorosulfonylbenzoyl-adenosine), an ATP analog that inhibits collagen-induced platelet activation (Colman et al., Blood 68:565, 1986) and binds irreversibly with ATPDases found on several cell types (Sevigny et al., Biochem. Biophys. Acta 1334:73,1997; Sevigny et al., Biochem. J., 312:351, 1995).

SolCD39 (2 nmol) was combined with 2 ml labeling buffer (100 mM Hepes, pH 7.4,200 mM NaCl, 4% dimethylformamide [vol/vol]), 400 jil 5 mM FSBA (Sigma Chemical Co.) dissolved in ethanol, and 1.52 ml water. A mock-treated sample was also prepared in which the FSBA solution was replaced with water. After incubating at 37' for 90 min., the samples were centrifiiged in a Centricon-10 filter unit (Amicon Coip.) for ] hour at 5,500 rpm and buffer exchanged into PBS to 10 remove unreacted material. The effect of FSBA-treated solCD39 on platelet reactivity is shown in Figure 9.

Induction of platelet activation by ADP (Fig. 9A) or collagen (Fig. 9B) was significantly inhibited by either purified so!CD39 or mock FSBA-treated solCD39. In contrast, incubation with FSBA-treated solCD39 did not have a significant effect on platelet activation. A comparative titration 15 of mock-treated solCD39 verses FSBA-treated solCD39 (Fig. 9C) indicated that 22.0 (ig/ml of FSBA-treated sol CD39 gave a similar aggregation profile as 0.88 (ig/ml of mock-treated solCD39. This indicated that 96% of the aggregation inhibitory activity of solCD39 was lost after FSBA derivitization. Analyses of residual ADPase activity of FSBA- treated solCD39 by the radio-TLC assay system demonstrated that approx. 94% of the enzymatic activity was blocked, while the 20 phosphate release assay indicated that a similar percentage of the ATPase activity was lost as well.

C. Mutagenesis Studies ' To identify amino acids involved in the biological activity of solCD39, site directed mutagenesis was used to alter selected amino acid residues in CD39. Mutants were assayed for 25 enzymatic (ATPase and ADPase) and platelet inhibitory (dose-dependent inhibition of platelet aggregation) activities. For one series of mutants, residues within the conserved apyrase regions were replaced with alanine.

Platelet inhibitory activity correlated generally with enzymatic activity. The E174A mutant (residues are numbered as in Figure 1) was completely devoid of enzymatic activity and had no effect 30 on platelet responsiveness; the S218A mutant retained less than 10% of ADPase activity and approx. 10% of platelet inhibitory activity. Glutamatel74 and Serine218 therefore appear to be important for both the enzymatic and platelet inhibitory activities of CD39.

Additional mutant forms of CD39 are expressed and assayed for enzymatic and platelet inhibitory activity in order to identify mutants with increased or decreased activity as well as mutants 35 that preferentially catalyze the ATPase or ADPase reaction. 45 WO 00/23459 PCT/US99/22955 EXAMPLE 16 Persistence of so)CD39 Following In Vivo Administration in Mice Balb/c mice (6-8 weeks of age; maintained under specific pathogen-free conditions; Jackson Laboratory, Bar Harbor, ME) were intravenously injected with"50 pg recombinant solCD39 in 100 pl 5 sterile saline (0.9% NaCl). No overt external difficulties were noted in the animals following injection. At various times after injection (5, 10, 30 min, 1,2,4,8,24 h), pairs of mice were bled by cardiac puncture and euthanized. Serum was prepared from each blood sample and frozen until assay. The presence of biologically active so!CD39 in serum samples was measured in ATPase and ADPase assays. The data were fit using Deltagraph (Deltapoint, Monterey, CA). The best fit was derived 10 using double exponential decay. Where indicated, specificity of enzyme activity was determined by incubating serum samples with anti-CD39 mAb-coated beads to remove CD39 prior to testing for ATPase activity.

As shown in Fig. 10, the data obtained best fit a biphasic exponential curve. The amount of ATPase activity from 25 pg/ml of solCD39 placed in murine serum is presented for comparison. The 15 tI/2a (distribution phase) was calculated to be 59 min in the ATPase assay and 43 min in the ADPase assay. Approximately 55-65% of apyrase activity was cleared from the circulation during this phase. The elimination phase had a t]/2P of approximately 40 h in both assays. Preclearing the 10 min, 2h, and 24 h time point samples with anti-CD39 mAb-coated beads completely eliminated serum ATPase/ADPase activities. These data also demonstrate that the assays specifically detect 20 recombinant human solCD39.

EXAMPLE 17 Pilot Dose Ranging Study in Yorkshire-Hampshire Pigs SolCD39 was administered to Yorkshire-Hampshire pigs, which have been developed as a 25 porcine model of thrombosis. Following intravenous injection, CD39 persisted in the circulation and was capable of inhibiting platelet aggregation and recruitment for as much as a week following injection. This is in marked contrast to many other therapeutic agents used for platelet inhibition, wherein the duration of inhibition is very short.

Ten pigs were randomly assigned to receive solCD39 in low (72 pg/kg), medium (221 pg/kg), 30 or high (670 pg/kg) doses. Aspirin was administered orally on a daily basis. Placebo controls consisted of aspirin. Saline controls and solCD39 were administered as a single bolus. Time points were measured following this administration. Blood samples were obtained via an external jugular vein catheter. Bleeding times were measured in pigs receiving placebo controls and in those receiving solCD39 at baseline and at 60 minutes. ADP-induced platelet aggregation was measured at specific 35 time intervals following administration. The concentration of CD39 in serum as a function of time was measured using an ELISA assay.

Administration of so!CD39 was well tolerated. It did not induce anemia or thrombocytopenia and, importantly, a second dose of so!CD39 could be administered without observable ill effects, such 46 as hypotension, thrombocytopenia, or hemorrhage. Clot retraction was normal following all experiments, indicating that platelet function was essentially normal.

A. Effect of solCD39 on Bleeding Time 5 Bleeding time is an absolute measure of platelet function. As shown in Figure 11, solCD39 induced a prolonged bleeding time. This indicated that a therapeutic effect had been obtained via a mild interference with platelet function. These mild increases in bleeding time were similar to those obtained by aspirin administration. This indicates that the hemorrhagic defect was mild.

B. Effects of Aspirin and solCD39 on Platelet Aggregation Figure 12A shows the effect of aspirin on platelet aggregation at baseline and at day 5, and Figure 12B shows the effect of high dose solCD39 on platelet aggregation at baseline and at day 7. Peak heights from the platelet aggregation curves for each of the three solCD39 doses are plotted in Fig. 13. The platelet aggregation data are also compared by plotting relative areas from the platelet 15 aggregation curves for each of the three solCD39 doses. A dose of 670 pg/kg inhibited greater than 90% of ADP induced platelet aggregation. The inhibitory effect was long-lived, with 30% inhibition (after high dose so!CD39) at two weeks. These experiments show that solCD39 has potent and long lasting anti-platelet effects, and that these effects are superior to those obtained using aspirin.

C. Persistence of solCD39 in Serum The persistence of soJCD39 in porcine serum, as determined by ELISA, is shown in Fig. 14. Distribution and clearance half-lives were determined using a biphasic curve fit. The t|/2a (distribution phase) was calculated to be 29 minutes. The elimination phase had a t]fl|3 of approximately 51 hours.

SolCD39 biological activity (ADPase activity) also exhibited a long elimination half-life, approaching 25 S-7 days, and could still be detected over two weeks after administration. During this time there were no changes in hematologic parameters and no evidence of hemorrhage despite tripling of the bleeding time.

D. Percutaneous Transluminal Coronary Angioplasty fPTCAl Study 30 Porcine platelets and fibrinogen were labeled with 11'indium and 12SIodine respectively for infusion into pigs. Twelve pigs were sedated and anesthetized, and randomly assigned to receive intravenous solCD39 (670 Hg/kg) plus heparin and ASA or intravenous saline placebo plus heparin and ASA. Oral ASA was given to all pigs for at least three day prior to the coronary angioplasty procedure, and heparin (100 U/kg) was given at the time of the angioplasty. One to three days prior to 35 the angioplasty an external jugular line was inserted to administer the labeled platelets and fibrin, CD39 or saline, and to facilitate blood draws. Labeled platelets and fibrinogen were given approximately 18 hours prior to balloon injury. Coronary arteries were injured using an oversize 47 balloon. A coronary guide catheter was first advanced into the ascending aorta. An oversized balloon was then advanced into a coronary vessel and inflated at 6 to 8 atmospheres for a total of thirty seconds. The balloon was then deflated and withdrawn. The average ratio of balloon size to vessel size was 1.32 for the placebo group and 1.29 for the CD39 group.

Platelet aggregation and bleeding time were measured 30 minutes after administration. The pigs were killed 24 hours after balloon injury and solCD39 administration, and the labeled platelet ('"indium) and fibrin (l25Iodine) deposition per cm2 was measured in the injured coronary artery segments. The results are summarized in TABLE 7. CD39 administration was well tolerated without bleeding or hemodynamic complications. Moreover, no bleeding was noted during PTCA or after 10 sheath removal and there was no significant difference in hematocrit or platelet counts between the groups.

These results show that the administration of solCD39 results in a significant inhibition of platelet aggregation and prolongation of bleeding time, as well as a trend toward inhibition of platelet and fibrin deposition, after balloon injury in animals. The results also suggest that CD 39 has a 15 minimal risk of inducing bleeding.

TABLE 7 Effects of solCD39 After Balloon Injury Platelet Fibrin Deposition % Inhibition of Treatment Deposition Ratio Ratio Bleeding Platelet Time Aggregation Placebo 1.78 ±0.4 0.71 ±0.14 3.03 ±0.2 1 ± 10 solCD39 1.25 ±0.19 0.62 ±0.10 7.00 ±0.81 80 ±2 p=value 0.2 0.5 0.009 0.001 After the radioactivity decayed, toluidine-blue stained injured coronary artery segments were 20 examined histologically, in order to further characterize the extent of thrombus formation. A blinded observer qualitatively evaluated the degree of histologic injury in the coronary segments by assessing, on a scale of 1 -4 with 4 being the most severe injury, the severity of medial and internal elastic lamina tear, media] separation, and hemorrhage. A composite injury score was obtained by totaling the three individual scores. The medial injury scores for the placebo and CD39 groups were 2.5 and 2.2 25 respectively; medial separation scores for the placebo and CD39 groups were 2.0 and 1.6 respectively; the degree of hemorrhage for the placebo and CD39 groups were 2.3 and 2.5 respectively. The composite injury scores for the placebo and CD39 groups were 6.6 and 6.2 respectively. These in vivo results correlate well with results, reported herein, obtained in vitro and ex vivo.

EXAMPLE 18 Soluble CD39 Provides Additive Inhibition of Platelet Aggregation Over Aspirin and Abciximab An ex vivo study was performed in order to evaluate the additive inhibition of platelet aggregation when soluble CD39 is added to platelet rich plasma from patients receiving: placebo, 48 aspirin, clopidogrel, ticlopidine, or abciximab. Each group consisted of three to six patients. The clopidogrel, ticlopidine, and abciximab groups also received aspirin. Baseline platelet aggregation was measured for each group, in response to the platelet agonists ADP, collagen, or the Thrombin Receptor Activating Peptide TRAP].6. SolCD39 (10 fig/ml or 100 (ig/ml) was then added and the additional inhibition of platelet activation (over baseline, in response to the platelet agonists) was measured in each of the five groups. The result are shown in TABLE 8.

TABLE 8 Additive Inhibition of Platelet Aggregation by Soluble CD39 Group Placebo Aspirin Clopidogrel Ticlopidine Abciximab Baseline ADP 84 + 4* 69 ±5 58 ±6 76 ±3 0±0 Collagen 85 ±1 62 ±8 57 ±9 71 ±17 0±0 TRAP 94 ±2 66 ±6 51 ±2 26 ±5 46 ±6 SolCD39 10 (ig/ml ADP 0±0 100%2 4 ±2 97% ±2 92% ± 2 86% 0 + 0 100% Collagen 75 + 2 11% 21 ±4 68% 31 ±9 48% 48 ±18 37% 0±0 100% TRAP 70 ±3 26% 38 ±7 45% ± 1 31% 19 ±6 33% 22 ±10 52% SolCD39 100 ng/ml ADP 0±0 100% 1±0 99% 0±0 100% 2±2 97% 0±0 100% Collagen 57 ±5 33% 16 ±4 75% 21 ±6 64% 37 ±15 53% 0±0 100% TRAP 65 ±4 30% 26 ±5 63% 23 + 3 55% 18 ±7 36% 22 ±9 52% Platelet aggregation, arbitrary units 2Percent inhibition relative to same agonist in the absence of CD39 Soluble CD39 at a concentration of 10 (ig/ml synergisticaliy inhibited ADP, collagen, and TRAP mediated platelet aggregation in patients on aspirin (p<0.001), and this effect was independent of clopidogrel and ticlopidine. Abciximab alone abolished platelet aggregation due to ADP and collagen, but CD39 provided synergistic inhibition of platelet aggregation induced by TRAP (p<0.007). Soluble CD39 at 100 pg/ml provided increased inhibition of platelet aggregation to all agonists. These results were also seen in vitro. Collagen and TRAP induce platelet aggregation via mechanisms in addition to ADP release and recruitment, so the ability of CD39 to inhibit collagen and TRAP-mediated platelet aggregation suggests additional versatility of CD39 as an antithrombotic agent. 49 EXAMPLE 19 Soluble CD39 Inhibits Thrombosis and Limits Ischemic Cerebral Injury in Wild Type and Reconstituted CD39 Null Mice The above examples suggested that soluble CD39 would inhibit ADP-mediated amplification 5 of platelet recruitment in distal microvessels, thereby reducing thrombosis after stroke. The following experiments illustrate the use of CD39 in a microvascular thrombosis (murine ischemic stroke) model. Soluble CD39 inhibited microvascular thrombosis and conferred cerebroprotection in stroke. A notable feature of the solCD39 treatment was the low incidence of intracerebral hemorrhage relative to that reported for other antithrombotic agents.

A. Materials and Methods C57BL/6J mice (6-8 wk) were obtained from Jackson Laboratories (Bar Harbor, ME). Untreated mice, and mice treated with 4 mg/kg solCD39, with 5 mg/kg aspirin or phosphate buffered saline, were anesthetized and heparinized (10 U/g), prior to blood collection via cardiac puncture. 80 15 |iL of 3.8% trisodium citrate was added to each mL of blood. Samples from 6-8 mice were pooled and platelet-rich plasma (PRP) was prepared by centrifugation. The PRP contained 400-700 x 103 platelets per nL. All experiments were completed within 2 hours of blood collection. PRP (200 |iL) was preincubated, for 3 min. at 37°C, with 100 jiL Tris-buffered saline buffer (15 mM NaCl, 5 mM glucose, pH 7.4) in an aggregometer cuvette (Lumiaggregometer; Chrono-Log, Havertown, PA), and 20 the platelet agonists ADP, collagen, or sodium arachidonate were added at the final concentrations indicated. Aggregation responses were recorded for 2-4 min, and expressed as area under the curve (height times width at 1/2 height).

The effects of soluble CD39 were tested in a previously validated murine model of stroke injury (Choudhri, T.F., et al., J. Clin. Invest. 102:1301-1310 (1998); Connolly, E.S., Jr., et al., J. Clin. 25 Invest. 97:209-216 (1996); and Connolly, E.S., Jr., et al., Neurosurg. 38(3):523-532 (1996)).

Anesthetized mice were maintained at 37 ± 2°C during and for 90 min following surgery. A midline neck incision was made and the right carotid artery exposed. Middle cerebral artery occlusion was accomplished by advancing a 13-mm heat-blunt tipped 6-0 nylon suture via an arteriotomy in the external carotid stump. The external carotid artery was cauterized to secure hemostasis, and arterial 30 flow re-established. Carotid artery occlusion never exceed 3 min. The occluding suture was removed after 45 min and cautery was again locally applied to prevent bleeding at the arteriotomy site. Surgical staples were used for wound closure.

Doppler measurement of cerebral cortical blood flow, neurological score (Huang, Z„ et al.. Science 265:183-1885 (1994)), calculation of infarct volume, measurement of cerebral thrombosis 35 using "'in-labeled platelets (Choudhri, T.F., et al., J. Clin. Invest. 102:1301-1310 (1998) and Naka, Y., et al., Circ. Res. 76:900-906 (1995)), detection of intracerebral fibrin (Choudhri, T.F., et al., J.

Clin. Invest. 102:1301-1310 (1998)), and measurement of intracerebral hemorrhage (Choudhri, T.F., et 50 al., J. Clin. Invest. 102:1301-1310 (1998) and Choudhri, T.F., et al., Stroke 28:2296-2302 (1997)) were measured as previously described. The results are described below.

B. Soluble CD39 Abrogates the Ex Vivo Aggregation of Murine Platelets Platelet-rich plasma was obtained from mice 1 hour after injection of saline (vehicle), soluble CD39, or aspirin. Ex vivo platelet aggregation was studied to ascertain the relative potency of solCD39 as compared to aspirin (which can improve the outcome following a transient ischemic attack). Platelets from control and aspirin-treated mice strongly aggregated following stimulation with ADP (Fig. 15A) or collagen (Fig. 15B).

Soluble CD39 abrogated platelet aggregation in the presence of ADP, and attenuated aggregation in the presence of collagen and arachidonate. In contrast, aspirin treatment only blocked platelet reactivity to arachidonate (Fig. 15C). The platelets from mice pretreated with solCD39 showed an initial aggregation in the presence of arachidonate, but rapidly disaggregated and returned to the resting state before a full response occurred (Fig. 15C).

C. Soluble CD39 Is Effective Even When Added at the Peak of the Aggregation Response ADP (5 pM) was added to mouse platelets in vitro to induce an aggregation response.

Soluble CD39 (2.5 jig/ml or 1.25 |J.g/ml) was added at the peak of the aggregation response. The solCD39 immediately reversed the aggregation response, as shown in Fig. 16. This result 20 demonstrates that SolCD39 is able to reverse an aggregation response, rapidly returning platelets to a resting state, even when added at the peak of the response. This result likely reflects the fact that at the peak of the aggregation response ADP is prominent in the releasate from the aggregating platelets. Soluble CD39 metabolizes this ADP to the biologically inactive compound AMP almost instantaneously, accounting for the rapid descent of the aggregation curve in Fig. 16, right side.

D. Soluble CD39 Reduces the Sequelae of Stroke Intravenously injected soluble CD39 showed therapeutic utility in stroke. Soluble CD39 inhibited platelet accumulation in the ipsilateral cerebral hemisphere following induction of stroke, as shown in Fig. 17A. Similarly, solCD39 decreased the level of fibrin accumulation in the ipsilateral 30 hemisphere (vs. contralateral) as measured by Western blot analysis using a fibrin specific antibody (Fig. 17B).

The ability of so!CD39 to reduce thrombosis, as measured by decreased platelet and fibrin deposition, was accompanied by improved postischemic cerebral perfusion 24 hours after stroke induction, as shown in Fig. 18A. In contrast, when aspirin was administered at a clinically relevant 35 dose (that inhibited the ex vivo response of platelets to arachidonate) no improvement was seen in postischemic cerebral blood flow (Fig. 18A).

Preoperatively administered so!CD39 conferred a dose-dependent diminution of cerebral infarct volume, as measured by digital histological analysis (Fig. 18B). Aspirin, in contrast, showed a 51 tendency to decrease cerebral infarct volume, although this effect was not statistically significant. The administration of soluble CD39 either prior to, or up to 3 h following, stroke reduced both neurological deficit (Fig. 18C) and mortality (Fig. 18D).

The effects of soluble CD39 and aspirin on the development of intracerebral hemorrhage 5 following stroke are shown in Fig. 18E. Aspirin increased intracerebral hemorrhage (as measured spectrophotometrically) significantly, but there was no significant increase in intracerebral hemorrhage at any dose of soluble CD39 tested. At these doses, soluble CD39 inhibited both platelet and fibrin accumulation and promoted an increase in postischemic blood flow, as shown in Figs. 17A, 17B, and 18A. Figure 19 shows a covariate plot of cerebral infarct volume vs. intracerebral hemorrhage for 10 each treatment, and indicates that aspirin is less capable of reducing infarct volume and preventing intracerebral hemorrhage than soluble CD39. In summary, at the doses tested in the mouse stroke model, solCD39 conferred protection without inducing the bleeding problems that often accompany anti-thrombotic therapy regimens.

E. CD39 Null Mice Can be Reconstituted with Soluble CD39 CD39-/- mice were generated using a gene targeting vector in which exons 4-6, encoding apyrase conserved regions 2-4 (Handa, M. & Guidotti, G., Biochem. Biophys. Res. Commun. 218:916-923 (1996); Wang, T.F. & Guidotti, G., J. Biol. Chem. 271:9898-9901 (1996); Maliszewski, C.R., et al., J. Immunol. 153:3574-3583 (1994); and Schoenborn, M.A., et al., Cytogen Cell Gen. 81(3-4):287-20 280 (1998)), were replaced with a PGKneo cassette, as shown in Fig. 20A. The gene targeting vector, in which a 4.1 kb Spel-BglQ fragment containing exons 4-6 was replaced with a PGKneo cassette, was introduced into 129-derived ES cells. Cells were selected in G418 and gancyclovir. Nine ES clones with a disrupted CD39 allele, as identified by genomic Southern blot analyses of BglII digested DNA as shown in Fig. 20B, were injected into blastocysts and the resulting chimeras crossed to C57BL/6 to 25 produce CD39 +/- heterozygotes. CD39-/- mice were generated at the expected Mendelian frequency from CD39 +/- intercrosses. The CD39-/- mice used in the experiments described below represent random C57BL/6 x 129 hybrids.

Homozygous CD39-/- mice were overtly normal, and did not display an obvious phenotype in the unperturbed state. Hematological profiles, including erythrocyte parameters, platelet counts, 30 leukocyte counts and differentials, and coagulation screening, were normal. As shown below, the CD39-null mice did not exhibit a prothrombotic phenotype unless challenged by experimental stroke. Under those conditions, the defect was abolished and normal blood fluidity was restored by administration of soluble CD39. Bleeding times of CD39-/- mice were normal, indicating that normal blood flow in an unperturbed animal is not dependent upon endogenous expression of CD39. As is 35 seen in norma] mice, CD39-/- animals exhibited markedly increased bleeding times following the administration of aspirin or following administration of increasing doses of solCD39 as shown in Fig. 21. CD39-/- mice subjected to focal cerebral ischemia exhibited diminished blood flow following reperfusion as compared to genetically matched controls (Fig. 22A), indicating that endogenous CD39 52 WO 00/23459 PCT/US99/22955 contributes to maintenance of hemostasis during episodes of vascular injury. When solCD39 (8 mg/kg) was administered to the CD39-/- mice, these mice were "reconstituted" as shown by a postischemic blood flow similar to untreated controls. CD39-/- mice demonstrated increased cerebral infarction volume as compared to genotype-matched controls following induced stroke (Fig. 22B).

S CD39-/- mice "reconstituted" with so!CD39 had markedly diminished infarct volume, indicating a protective effect of solCD39. Other parameters (neurological deficit scores, overall mortality, and intracerebral hemorrhage) did not differ between groups (Fig. 22 C, D, E).

These results demonstrate that CD39 inhibits microvascular thrombosis and confers cerebroprotection without inducing intracerebral hemorrhage in a murine model of stroke. Soluble 10 CD39 decreased platelet deposition, fibrin deposition, and cerebral infarction volume. Soluble CD39 reduced infarction volume and restored postischemic blood flow even when administered three hours following stroke induction. This result is important because the average patient experiencing a stroke appears in the emergency room approximately three hours after the initial event occurs. The ability to treat patients with solCD39 after three hours provides an important advantage over many other agents 15 designed to inhibit platelet reactivity.

EXAMPLE 20 Soluble CD39 Improves Survival in a Mouse Ischemia Model C57BL/6 mice were anesthetized and ventilated, and their thoraces were opened to surgically 20 expose both pulmonary hila. Either physiological saline or soluble CD39 (8 mg/kg) was administered intravenously, after which the left pulmonary hilum was cross-clamped for one hour. The cross-clamp was removed for three hours of reperfusion, and then a cross-clamp was applied to the right hilum for a thirty minute observation period. This latter maneuver effectively removed the normal lung from circulation, so that the mouse must survive on the function of the post-ischemic left lung. The results 25 are shown, in the form of a Kaplan-Meier survival plot, in Figure 23. All of the mice given saline (n=6) died prior to the thirty minute time point whereas all of the sol39-treated mice (n=3) survived for thirty minutes.

The long lasting effects of soluble CD39 are also shown to be clinically useful in the reduction of complications of atherosclerosis, such as myocardial infarction, stroke, and peripheral 30 vascular occlusion. Patients suffering from these conditions demonstrate an abundance of activated platelets in their circulation, and such activated platelets have a lowered threshold for ADP stimulation. Soluble CD39 metabolically deletes ADP from the fluid phase of activated platelets and reverses their prothrombotic characteristics.

The relevant disclosures of publications cited herein are specifically incorporated by 35 reference. The examples presented above are not intended to be exhaustive or to limit the scope of the invention. The skilled artisan will understand that variations and modifications and variations are possible in light of the above teachings, and such modifications and variations are intended to be within the scope of the invention. 53

Claims (34)

1. An isolated polypeptide having the structure X-Y wherein X is selected from the group consisting of an Ala residue and heterologous peptides capable of adopting a stable secondary structure and Y is a soluble CD39 polypeptide selected from the group consisting of: (a) polypeptides having an amino acid sequence as set forth in Figure 1 (SEQ ID NO:2) wherein the amino terminus is selected from the group consisting of amino acids 36-44, and the carboxy terminus is selected from the group consisting of amino acids 471-478; (b) fragments of the polypeptides of (a) wherein said fragments have apyrase activity; and (c) variants of the polypeptides of (a) or (b), wherein said variants have apyrase activity.

2. The polypeptide of claim 1 wherein Y is a soluble CD39 polypeptide selected from the group consisting of: (a) polypeptides having a sequence consisting of amino acids 38-476 or 39-476 of SEQ ID NO:2; (b) variant polypeptides that are at least 70% identical in amino acid sequence to amino acids 36 to 478 of SEQ ID NO:2 or to a fragment thereof, wherein said variant polypeptides have apyrase activity; (c) variant polypeptides that are at least 80% identical in amino acid sequence to amino acids 36 to 478 of SEQ ID NO:2 or to a fragment thereof, wherein said variant polypeptides have apyrase activity; (d) variant polypeptides that are at least 90% identical in amino acid sequence to amino acids 36 to 478 of SEQ ID NO:2 or to a fragment thereof, wherein said variant polypeptides have apyrase activity; (e) variant polypeptides that are at least 95% identical in amino acid sequence to amino acids 36 to 478 of SEQ ID NO:2 or to a fragment thereof, wherein said variant polypeptides have apyrase activity; (f) variant polypeptides that are at least 98% identical in amino acid sequence to amino acids 36 to 478 of SEQ ID NO:2 or to a fragment thereof, wherein said variant polypeptides have apyrase activity; and (g) variant polypeptides that are at least 99% identical in amino acid sequence to amino acids 36 to 478 of SEQ ID NO:2 or to a fragment thereof, wherein said variant polypeptides have apyrase activity.

3. The polypeptide of claim 1 wherein X is a peptide fragment from the amino terminal portion of mature IL-2, CD39-L2, CD39-L3, or CD39-L4. 54 iO

4. A polypeptide having the structure A-B-C wherein A is 0-20 amino acids from the amino terminal portion of mature IL-2, B is a linker of 0-15 amino acids, and C is the soluble CD39 polypeptide Y of claim 1.

5. An isolated soluble CD39 polypeptide selected from the group consisting of: (a) SEQ ID NO: 6, amino acids 25-464 of SEQ ID NO:27, amino acids 25-474 of SEQ ID NO:28, amino acids 27-473 of SEQ ED NO:29, amino acids 21-476 of SEQ ID NO:3, amino acids 21-476 of SEQ ID NO:4, or amino acids 21-463 of SEQ ID N0:30; and (b) fusion polypeptides comprising the polypeptides of (a), wherein said fusion polypeptides have apyrase activity.

6. The soluble CD39 polypeptide of claim 5 having an amino acid sequence selected from the group consisting of SEQ ID NO: 6, amino acids 25-464 of SEQ ID NO:27, amino acids 25-474 of SEQ ID NO:28, amino acids 27-473 of SEQ ID NO:29, amino acids 21-476 of SEQ ID NO:3, amino acids 21-476 of SEQ ID NO:4, and amino acids 21-463 of SEQ ID N0:30.

7. The soluble CD39 polypeptide of claim 6 having the sequence of amino acids 21-463 of SEQ ID N0:30.

8. An isolated nucleic acid encoding a polypeptide of one of claims 1-7.

9. The nucleic acid of claim 8 wherein said nucleic acid is DNA.

10. The DNA of claim 9 having a sequence selected from the group consisting of: (a) SEQ ID NO:5; and (b) DNA sequences which, due to degeneracy of the genetic code, encode the polypeptide encoded by SEQ ID NO:5.

11. The DNA of claim 9 wherein said DNA further encodes a leader peptide operably linked to the N-terminus of the polypeptide, wherein the leader peptide facilitates the extracellular secretion of the polypeptide.

12. The DNA of claim 11 wherein the leader peptide comprises ail or part of a leader from IL-2, proinsulin, human growth hormone (huGH), IL7, or Igkappa.

13. The DNA of claim 12 wherein the leader peptide comprises the sequence SEQ ID NO:9. 55 c»n © ■'Ti "Tl; " f J /

14. The DNA of claim 11 having a sequence selected from the group consisting of (a) SEQ ID NO:7; and (b) DNA sequences which, due to degeneracy of the genetic code, encode the polypeptide encoded by SEQ ID NO:7.

15. A vector comprising the nucleic acid of claim 8.

16. The vector of claim 15 wherein said vector is an expression vector.

17. The vector of claim 16 wherein said vector is a eukaryotic expression vector.

18. A eukaryotic expression vector comprising the sequence SEQ ID NO:5.

19. A eukaryotic expression vector comprising the sequence SEQ ID. J:7.

20. A recombinant cell comprising the nucleic acid of claim 8, wherein the cell is not a human cell in situ in a human body.

21. The cell of claim 20 wherein said cell is a prokaryotic cell.

22. The cell of claim 20 wherein said cell is a eukaryotic cell.

23. The cell of claim 22 wherein said cell is a COS cell or a CHO cell.

24. The cell of claim 23 wherein said cell is a CHO cell that has been adapted to grow in suspension and in the absence of serum.

25. A recombinant CHO cell comprising a nucleic acid sequence SEQ ID NO:5 or SEQ ID NO:7.

26. A process for preparing a soluble CD39 polypeptide comprising culturing a recombinant cell according to claim 20 under conditions that permit expression of the CD39 polypeptide and recovering the CD39 polypeptide from the culture.

27. The process of claim 26 wherein the recombinant cell is a eukaryotic cell.

28. The process of claim 26 wherein the recombinant cell is a CHO cell that has been adapted to grow in suspension and in the absence of serum. 56

29. A polypeptide produced according to the process of claim 26.

30. A polypeptide produced according to the process of claim 28.

31. A composition comprising a pharmaceutically acceptable carrier and a polypeptide according to one of claims 1-7.

32. A composition comprising a pharmaceutically acceptable carrier and a polypeptide according to claim 29.

33. A composition comprising a pharmaceutically acceptable carrier and a polypeptide according to claim 30.

34. The use, in the manufacture of a medicament of a therapeutic amount of a soluble CD39 polypeptide, for inhibiting angiogenesis in a mammal in need of such treatment. 57