DK3332034T3 - Systemer og fremgangsmåder til genomisk analyse - Google Patents
Systemer og fremgangsmåder til genomisk analyse Download PDFInfo
- Publication number
- DK3332034T3 DK3332034T3 DK16833874.7T DK16833874T DK3332034T3 DK 3332034 T3 DK3332034 T3 DK 3332034T3 DK 16833874 T DK16833874 T DK 16833874T DK 3332034 T3 DK3332034 T3 DK 3332034T3
- Authority
- DK
- Denmark
- Prior art keywords
- systems
- methods
- genomic analysis
- genomic
- analysis
- Prior art date
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
- G16B25/10—Gene or protein expression profiling; Expression-ratio estimation or normalisation
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/20—Sequence assembly
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
- G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
- G16B40/20—Supervised data analysis
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B45/00—ICT specially adapted for bioinformatics-related data visualisation, e.g. displaying of maps or networks
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
- G16B50/30—Data warehousing; Computing architectures
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Physics & Mathematics (AREA)
- Engineering & Computer Science (AREA)
- Health & Medical Sciences (AREA)
- Medical Informatics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biophysics (AREA)
- Biotechnology (AREA)
- General Health & Medical Sciences (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Theoretical Computer Science (AREA)
- Bioinformatics & Computational Biology (AREA)
- Evolutionary Biology (AREA)
- Chemical & Material Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Analytical Chemistry (AREA)
- Data Mining & Analysis (AREA)
- Molecular Biology (AREA)
- Databases & Information Systems (AREA)
- Genetics & Genomics (AREA)
- Organic Chemistry (AREA)
- Bioethics (AREA)
- Epidemiology (AREA)
- Wood Science & Technology (AREA)
- Evolutionary Computation (AREA)
- Public Health (AREA)
- Software Systems (AREA)
- Computer Vision & Pattern Recognition (AREA)
- Zoology (AREA)
- Artificial Intelligence (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Biochemistry (AREA)
- General Engineering & Computer Science (AREA)
- Signal Processing (AREA)
- Physiology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201562201923P | 2015-08-06 | 2015-08-06 | |
| PCT/US2016/045564 WO2017024138A1 (en) | 2015-08-06 | 2016-08-04 | Systems and methods for genomic analysis |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| DK3332034T3 true DK3332034T3 (da) | 2024-10-28 |
Family
ID=57943995
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| DK16833874.7T DK3332034T3 (da) | 2015-08-06 | 2016-08-04 | Systemer og fremgangsmåder til genomisk analyse |
Country Status (8)
| Country | Link |
|---|---|
| US (2) | US11929149B2 (da) |
| EP (1) | EP3332034B1 (da) |
| JP (1) | JP6946292B2 (da) |
| CN (1) | CN108350494B (da) |
| AU (2) | AU2016301354B2 (da) |
| CA (1) | CA2994406A1 (da) |
| DK (1) | DK3332034T3 (da) |
| WO (1) | WO2017024138A1 (da) |
Families Citing this family (31)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP3604555B1 (en) | 2011-10-14 | 2024-12-25 | President and Fellows of Harvard College | Sequencing by structure assembly |
| ES2991004T3 (es) | 2011-12-22 | 2024-12-02 | Harvard College | Métodos para la detección de analitos |
| WO2014163886A1 (en) | 2013-03-12 | 2014-10-09 | President And Fellows Of Harvard College | Method of generating a three-dimensional nucleic acid containing matrix |
| WO2013184754A2 (en) | 2012-06-05 | 2013-12-12 | President And Fellows Of Harvard College | Spatial sequencing of nucleic acids using dna origami probes |
| US10395759B2 (en) | 2015-05-18 | 2019-08-27 | Regeneron Pharmaceuticals, Inc. | Methods and systems for copy number variant detection |
| JP6882282B2 (ja) | 2015-11-03 | 2021-06-02 | プレジデント アンド フェローズ オブ ハーバード カレッジ | 三次元核酸含有マトリックスの立体撮像のための方法と装置 |
| KR102341129B1 (ko) | 2016-02-12 | 2021-12-21 | 리제너론 파마슈티칼스 인코포레이티드 | 비정상적인 핵형을 검출하기 위한 방법 및 시스템 |
| JP7259182B2 (ja) | 2016-04-25 | 2023-04-18 | プレジデント アンド フェローズ オブ ハーバード カレッジ | ｉｎ ｓｉｔｕ分子検出のためのハイブリダイゼーション連鎖反応法 |
| US20190139628A1 (en) * | 2016-04-27 | 2019-05-09 | Arc Bio, Llc | Machine learning techniques for analysis of structural variants |
| GB2569252A (en) | 2016-08-31 | 2019-06-12 | Harvard College | Methods of combining the detection of biomolecules into a single assay using fluorescent in situ sequencing |
| CN107480471B (zh) * | 2017-07-19 | 2020-09-01 | 福建师范大学 | 基于小波变换为特征的序列相似性分析的方法 |
| AU2018353924A1 (en) | 2017-12-29 | 2019-07-18 | Clear Labs, Inc. | Automated priming and library loading device |
| MX2020012672A (es) * | 2018-05-31 | 2021-02-09 | Koninklijke Philips Nv | Sistema y metodo para interpretacion de alelos usando un genoma de referencia basado en graficos. |
| US20220002781A1 (en) * | 2018-10-04 | 2022-01-06 | Arc Bio, Llc | Normalization controls for managing low sample inputs in next generation sequencing |
| WO2020076976A1 (en) | 2018-10-10 | 2020-04-16 | Readcoor, Inc. | Three-dimensional spatial molecular indexing |
| KR20210082390A (ko) * | 2018-10-31 | 2021-07-05 | 일루미나, 인코포레이티드 | 시퀀싱 리드 그루핑 및 콜랩싱을 위한 시스템 및 방법 |
| CN109753939B (zh) * | 2019-01-11 | 2021-04-20 | 银丰基因科技有限公司 | 一种hla测序峰图识别方法 |
| CN109979537B (zh) * | 2019-03-15 | 2020-12-18 | 南京邮电大学 | 一种面向多条序列的基因序列数据压缩方法 |
| CN110349635B (zh) * | 2019-06-11 | 2021-06-11 | 华南理工大学 | 一种基因测序数据质量分数的并行压缩方法 |
| CN111261225B (zh) * | 2020-02-06 | 2022-08-16 | 西安交通大学 | 一种基于二代测序数据的反转相关复杂变异检测方法 |
| CA3187366A1 (en) | 2020-07-31 | 2022-02-03 | Arc Bio, Llc | Systems, methods, and media for determining relative quality of oligonucleotide preparations |
| US20220049303A1 (en) | 2020-08-17 | 2022-02-17 | Readcoor, Llc | Methods and systems for spatial mapping of genetic variants |
| CN112164419A (zh) * | 2020-09-04 | 2021-01-01 | 云舟生物科技（广州）有限公司 | 在orf中插入蛋白标签的方法以及计算机存储介质 |
| WO2022054178A1 (ja) * | 2020-09-09 | 2022-03-17 | 株式会社日立ハイテク | 個体ゲノムの構造変異検出方法及び装置 |
| CN112233726B (zh) * | 2020-10-23 | 2025-02-11 | 深圳未知君生物科技有限公司 | 一种细菌菌株的分析方法、分析装置和存储介质 |
| WO2023225326A1 (en) * | 2022-05-20 | 2023-11-23 | Twinstrand Biosciences, Inc. | Genomics alignment probability score rescaler |
| WO2023244782A1 (en) * | 2022-06-16 | 2023-12-21 | The Jackson Laboratory | Systems and methods for identifying cross-species gene and gene variant relationships |
| CN119422168A (zh) * | 2022-06-29 | 2025-02-11 | 深圳华大生命科学研究院 | 一种图像处理方法、装置、设备及介质 |
| CN115458051B (zh) * | 2022-09-28 | 2023-03-21 | 北京泛生子基因科技有限公司 | 一种可保留分子标签信息的在测序数据中模拟小变异的方法、装置及计算机可读存储介质 |
| CN115602244B (zh) * | 2022-10-24 | 2023-04-28 | 哈尔滨工业大学 | 一种基于序列比对骨架的基因组变异检测方法 |
| KR102646434B1 (ko) * | 2022-12-07 | 2024-03-12 | 주식회사 엔비아이티 | 도트 플롯 뷰어를 포함하는 blast 기반의 사용자 인터페이스를 제공하는 전자 장치 |
Family Cites Families (19)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5750341A (en) | 1995-04-17 | 1998-05-12 | Lynx Therapeutics, Inc. | DNA sequencing by parallel oligonucleotide extensions |
| ATE364718T1 (de) | 1997-04-01 | 2007-07-15 | Solexa Ltd | Verfahren zur vervielfältigung von nukleinsäure |
| US6787308B2 (en) | 1998-07-30 | 2004-09-07 | Solexa Ltd. | Arrayed biomolecules and their use in sequencing |
| AR021833A1 (es) | 1998-09-30 | 2002-08-07 | Applied Research Systems | Metodos de amplificacion y secuenciacion de acido nucleico |
| US7244559B2 (en) | 1999-09-16 | 2007-07-17 | 454 Life Sciences Corporation | Method of sequencing a nucleic acid |
| US7211390B2 (en) | 1999-09-16 | 2007-05-01 | 454 Life Sciences Corporation | Method of sequencing a nucleic acid |
| US8396950B1 (en) | 2000-03-02 | 2013-03-12 | Rockstar Consortium Us Lp | Method and apparatus for the fast detection of connectivity loss between devices in a network |
| ES2380893T3 (es) | 2003-01-29 | 2012-05-21 | 454 Life Sciences Corporation | Amplificación de ácidos nucleicos en emulsión en perlas |
| US7948015B2 (en) | 2006-12-14 | 2011-05-24 | Life Technologies Corporation | Methods and apparatus for measuring analytes using large scale FET arrays |
| US8262900B2 (en) | 2006-12-14 | 2012-09-11 | Life Technologies Corporation | Methods and apparatus for measuring analytes using large scale FET arrays |
| US20100064234A1 (en) * | 2007-03-09 | 2010-03-11 | Ghost, Inc. | System and Method for Browser within a Web Site and Proxy Server |
| CN101889074A (zh) | 2007-10-04 | 2010-11-17 | 哈尔西恩莫尔丘勒公司 | 采用电子显微镜对核酸聚合物测序 |
| US8862979B2 (en) | 2008-01-15 | 2014-10-14 | Microsoft Corporation | Multi-client collaboration to access and update structured data elements |
| CA2823061A1 (en) * | 2010-12-29 | 2012-07-05 | Dow Agrosciences Llc | Data analysis of dna sequences |
| JP5403563B2 (ja) * | 2011-05-19 | 2014-01-29 | 独立行政法人放射線医学総合研究所 | 網羅的フラグメント解析における遺伝子同定方法および発現解析方法 |
| EP2544113A1 (en) * | 2011-07-05 | 2013-01-09 | Koninklijke Philips Electronics N.V. | Genomic/proteomic sequence representation, visualization, comparison and reporting using a bioinformatics character set and a mapped bioinformatics font |
| US8209130B1 (en) | 2012-04-04 | 2012-06-26 | Good Start Genetics, Inc. | Sequence assembly |
| US20140025593A1 (en) | 2012-07-23 | 2014-01-23 | DLC Enterprises, Inc. | Compliance Analysis System |
| CN106068330B (zh) * | 2014-01-10 | 2020-12-29 | 七桥基因公司 | 将已知等位基因用于读数映射中的系统和方法 |
-
2016
- 2016-08-04 JP JP2018526496A patent/JP6946292B2/ja active Active
- 2016-08-04 WO PCT/US2016/045564 patent/WO2017024138A1/en active Application Filing
- 2016-08-04 DK DK16833874.7T patent/DK3332034T3/da active
- 2016-08-04 EP EP16833874.7A patent/EP3332034B1/en active Active
- 2016-08-04 CN CN201680059045.3A patent/CN108350494B/zh active Active
- 2016-08-04 CA CA2994406A patent/CA2994406A1/en active Pending
- 2016-08-04 AU AU2016301354A patent/AU2016301354B2/en active Active
- 2016-08-04 US US15/750,350 patent/US11929149B2/en active Active
-
2022
- 2022-09-27 AU AU2022241472A patent/AU2022241472B2/en active Active
-
2023
- 2023-12-22 US US18/395,416 patent/US20240404635A1/en active Pending
Also Published As
| Publication number | Publication date |
|---|---|
| AU2016301354A1 (en) | 2018-02-15 |
| CN108350494A (zh) | 2018-07-31 |
| WO2017024138A1 (en) | 2017-02-09 |
| CA2994406A1 (en) | 2017-02-09 |
| AU2022241472A1 (en) | 2022-10-20 |
| EP3332034A4 (en) | 2019-01-02 |
| EP3332034A1 (en) | 2018-06-13 |
| AU2016301354B2 (en) | 2022-06-30 |
| JP2018533143A (ja) | 2018-11-08 |
| US20200090786A1 (en) | 2020-03-19 |
| EP3332034B1 (en) | 2024-09-25 |
| JP6946292B2 (ja) | 2021-10-06 |
| CN108350494B (zh) | 2024-02-27 |
| AU2022241472B2 (en) | 2024-10-03 |
| US11929149B2 (en) | 2024-03-12 |
| US20240404635A1 (en) | 2024-12-05 |
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