[go: up one dir, main page]

CN118221830B - T cell antigen receptor and its application - Google Patents

T cell antigen receptor and its application Download PDF

Info

Publication number
CN118221830B
CN118221830B CN202410171062.2A CN202410171062A CN118221830B CN 118221830 B CN118221830 B CN 118221830B CN 202410171062 A CN202410171062 A CN 202410171062A CN 118221830 B CN118221830 B CN 118221830B
Authority
CN
China
Prior art keywords
seq
chain variable
variable region
tcr
antigen receptor
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
CN202410171062.2A
Other languages
Chinese (zh)
Other versions
CN118221830A (en
Inventor
张恒辉
武雪莹
沈宁
魏玲
倪辰星
赵倩丽
王赔影
张俊航
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Beijing Zhenzhi Medical Technology Co ltd
Original Assignee
Beijing Zhenzhi Medical Technology Co ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Beijing Zhenzhi Medical Technology Co ltd filed Critical Beijing Zhenzhi Medical Technology Co ltd
Priority to CN202410171062.2A priority Critical patent/CN118221830B/en
Publication of CN118221830A publication Critical patent/CN118221830A/en
Application granted granted Critical
Publication of CN118221830B publication Critical patent/CN118221830B/en
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/08Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from viruses
    • C07K16/081Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from viruses from DNA viruses
    • C07K16/085Herpetoviridae, e.g. pseudorabies virus, Epstein-Barr virus
    • C07K16/088Varicella-zoster virus
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K39/12Viral antigens
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12Antivirals
    • A61P31/20Antivirals for DNA viruses
    • A61P31/22Antivirals for DNA viruses for herpes viruses
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/705Receptors; Cell surface antigens; Cell surface determinants
    • C07K14/70503Immunoglobulin superfamily
    • C07K14/70539MHC-molecules, e.g. HLA-molecules
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/85Vectors or expression systems specially adapted for eukaryotic hosts for animal cells
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N5/00Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
    • C12N5/06Animal cells or tissues; Human cells or tissues
    • C12N5/0602Vertebrate cells
    • C12N5/0634Cells from the blood or the immune system
    • C12N5/0636T lymphocytes
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/51Medicinal preparations containing antigens or antibodies comprising whole cells, viruses or DNA/RNA
    • A61K2039/515Animal cells
    • A61K2039/5158Antigen-pulsed cells, e.g. T-cells
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/50Immunoglobulins specific features characterized by immunoglobulin fragments
    • C07K2317/56Immunoglobulins specific features characterized by immunoglobulin fragments variable (Fv) region, i.e. VH and/or VL
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/50Immunoglobulins specific features characterized by immunoglobulin fragments
    • C07K2317/56Immunoglobulins specific features characterized by immunoglobulin fragments variable (Fv) region, i.e. VH and/or VL
    • C07K2317/565Complementarity determining region [CDR]
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2510/00Genetically modified cells
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2710/00MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA dsDNA viruses
    • C12N2710/00011Details
    • C12N2710/16011Herpesviridae
    • C12N2710/16111Cytomegalovirus, e.g. human herpesvirus 5
    • C12N2710/16134Use of virus or viral component as vaccine, e.g. live-attenuated or inactivated virus, VLP, viral protein

Landscapes

  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • General Health & Medical Sciences (AREA)
  • Immunology (AREA)
  • Biotechnology (AREA)
  • Biomedical Technology (AREA)
  • Zoology (AREA)
  • Virology (AREA)
  • Wood Science & Technology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Medicinal Chemistry (AREA)
  • Biochemistry (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • Biophysics (AREA)
  • General Engineering & Computer Science (AREA)
  • Public Health (AREA)
  • Animal Behavior & Ethology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Cell Biology (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Veterinary Medicine (AREA)
  • Plant Pathology (AREA)
  • Hematology (AREA)
  • Physics & Mathematics (AREA)
  • General Chemical & Material Sciences (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Oncology (AREA)
  • Communicable Diseases (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Epidemiology (AREA)
  • Toxicology (AREA)
  • Gastroenterology & Hepatology (AREA)
  • Mycology (AREA)
  • Tropical Medicine & Parasitology (AREA)
  • Peptides Or Proteins (AREA)

Abstract

本发明涉及T细胞抗原受体技术领域,公开了一种T细胞抗原受体及其应用。本发明提供的T细胞抗原受体能够特异性识别并结合HLA‑A*11:01CMVpp65501‑509抗原复合物。经实验验证,本发明提供的T细胞抗原受体能够特异性地被CMV表位肽激活,具有良好的体外杀伤靶细胞的活性,且能够释放IFN‑γ等细胞因子。另外,经过ALA‑SCAN实验和生信全蛋白组比对,排除了本发明提供的T细胞抗原受体的On‑target‑off‑tumor脱靶风险,从而其具有较高的临床应用价值及更好的安全性。

The present invention relates to the technical field of T cell antigen receptors, and discloses a T cell antigen receptor and its application. The T cell antigen receptor provided by the present invention can specifically recognize and bind to the HLA-A*11:01CMVpp65 501-509 antigen complex. It has been experimentally verified that the T cell antigen receptor provided by the present invention can be specifically activated by CMV epitope peptides, has good in vitro activity of killing target cells, and can release cytokines such as IFN-γ. In addition, after ALA-SCAN experiments and bioinformatics full protein group comparisons, the on-target-off-tumor off-target risk of the T cell antigen receptor provided by the present invention is eliminated, so that it has a higher clinical application value and better safety.

Description

T cell antigen receptor and application thereof
Technical Field
The invention relates to the technical field of T cell antigen receptors, in particular to a T cell antigen receptor and application thereof.
Background
Human Cytomegalovirus (CMV) is a widely occurring herpes virus with an infection rate of 50-100% in the adult population. In individuals with normal immune systems, infection with CMV typically does not show any symptoms. However, in individuals with suppressed immune systems, such as aids patients or patients who have received organ transplants, reactivation of CMV can lead to severe or even fatal disease. Traditional therapies for CMV include treatment with antiviral drugs, such as ganciclovir, sodium phosphonate, and cidofovir, but these drugs are often limited and often cause serious side effects.
Cell receptor therapy is an Adoptive cell therapy technique (Adoptive CELL TRANSFER THERAPY, ACT) which mainly uses the mode of collecting human autoimmune cells, introducing the human autoimmune cells into a cell receptor, culturing the human autoimmune cells in vitro to expand the number of the human autoimmune cells, and killing pathogens, cancer cells or mutated cells in blood and tissues in a mode of reinfusion into a patient. A T Cell antigen Receptor (TCR) is a surface protein capable of specifically recognizing an antigen on the surface of a T Cell, and a specific TCR sequence is introduced into the T Cell to obtain a T Cell that specifically recognizes the antigen and kills cells containing the antigen, thereby treating diseases caused by virus infection such as CMV by Cell Receptor therapy.
The major histocompatibility complex (Major Histocompatibility Complex, MHC) is a collective term for a group of genes encoding animal major histocompatibility antigens, and human MHC is known as human leukocyte antigen (Human Leukocyte antigen, HLA). HLA exhibits high polymorphism, and HLA typing varies among people in different countries and regions. HLA typing accounts for the largest proportion of HLA-a3 superfamily (including HLA-A11, HLA-A33, HLA-A68, HLA-A31, etc.) in the Chinese population, and accounts for about 52.7% of HLA typing in the Chinese population.
Although researchers have developed a variety of TCRs for CMV, there have been no reports on TCR sequences based on HLA-A3 superfamily restriction epitopes.
Disclosure of Invention
The invention aims to solve the problems of the prior art that TCR aiming at HLA main typing restriction epitopes of Chinese population and related high-efficiency CMV treatment methods are lacking, and provides a T cell antigen receptor and application thereof. The T cell antigen receptor provided by the invention can specifically recognize and combine with HLA-A 11:01CMV antigen complex, has good activity of killing target cells, can release cytokines such as IFN-gamma and the like, and eliminates the On-target/off-tumor off-target risk of the T cell antigen receptor through experiments.
In order to achieve the above object, the present invention provides, in one aspect, a T cell antigen receptor that specifically recognizes and binds to a human cytomegalovirus binding epitope comprising the amino acid sequence shown in SEQ ID No. 1.
In a second aspect the invention provides a nucleic acid molecule encoding the T cell antigen receptor of the first aspect.
In a third aspect the invention provides a nucleic acid expression vector comprising a coding gene and a vector sequence, wherein the coding gene is provided by a nucleic acid molecule according to the second aspect.
In a fourth aspect the invention provides a vector cell comprising the T cell antigen receptor of the first aspect and/or comprising the nucleic acid molecule of the second aspect and/or comprising the nucleic acid expression vector of the third aspect.
In a fifth aspect, the invention provides the use of a T cell antigen receptor according to the first aspect, and/or a nucleic acid molecule according to the second aspect, and/or a nucleic acid expression vector according to the third aspect, and/or a vector cell according to the fourth aspect, for the preparation of a medicament and/or vaccine for the prophylaxis and/or treatment of a disease caused by human cytomegalovirus infection.
In a sixth aspect, the invention provides a pharmaceutical composition for preventing and/or treating a disease caused by human cytomegalovirus infection, comprising the T cell antigen receptor of the first aspect, and/or the nucleic acid molecule of the second aspect, and/or the nucleic acid expression vector of the third aspect, and/or the vector cell of the fourth aspect.
Through the technical scheme, the invention at least has the following beneficial effects:
(1) The TCR molecule provided by the invention can recognize and combine with HLA-A 11:01CMV pp65 501-509 antigen complex, and is more suitable for people in China to use. After activated by the specific CMV epitope peptide, the TCR molecule has good activity of killing target cells in vitro, and can release cytokines such as IFN-gamma and the like, thereby having potential of being applied to CMV treatment/prevention through cell receptor therapy.
(2) The On-target/off-tumor off-target risk of the TCR molecule provided by the invention is eliminated through ALA-SCAN experiment and whole protein group comparison, so that the TCR molecule has clinical application value, and the TCR molecule is used with smaller off-target toxicity risk, so that the TCR molecule has better safety.
(3) The method for in vitro culture and amplification of the specific T cells containing the TCR molecules provided by the invention is simple and easy to operate, and the CMV pp65 epitope peptide is directly used for stimulating the PBMC to culture, so that the large-scale clinical application of the TCR molecules and the treatment/prevention method of the specific T cells containing the TCR molecules can be realized.
Drawings
FIG. 1 is a graph of CMV +CD8+ T cell duty cycle results of flow assays of T cells in example 1 after stimulation and stimulation with CMV epitope peptide.
FIG. 2 is a graph showing the results of ELISPot assay of T cell secretion of cytokine IFN-gamma in example 1.
FIG. 3 is a schematic diagram of the construction of an in vitro transcription plasmid vector in example 2.
FIG. 4 is a graph showing the results of gel electrophoresis of TCR mRNA obtained in example 2.
FIG. 5 is a map of HLA lentivirus expression plasmid employed in example 3.
FIG. 6 is a graph showing HLA expression level analysis of monoclonal cells for flow assay in example 3.
FIG. 7 is a flow chart of the flow assay of example 3 for electrotransport ZZ1 and ZZ2 NFAT-Luc Jurkat.
FIGS. 8A and 8B are graphs showing statistical results of NFAT-fluorescence values of ZZ1-NFAT-Luc Jurkat and ZZ2-NFAT-Luc Jurkat detected by a microplate reader in example 3.
FIG. 9 is a flow chart of the specific ratios of ZZ1 TCR-T and ZZ2 TCR-T for flow assays in example 4.
FIG. 10 is a graph showing the results of EuTDA detection of the killing efficiency of ZZ1 TCR-T and ZZ2 TCR-T on target cells in example 4.
FIGS. 11A and 11B are graphs showing the results of ELISA assays for ZZ1 TCR-T and ZZ2 TCR-T for cytokine IFN-gamma secretion in example 5.
FIG. 12 is a schematic representation of the position of an alanine mutation in an alanine scanning peptide library constructed in example 6.
FIG. 13 is a statistical plot of ELISPOT assay ZZ1 TCR-T secretion IFN-gamma spots in example 6.
FIG. 14 is a statistical plot of ELISPOT assay ZZ2 TCR-T secretion IFN-gamma spots in example 6.
FIG. 15 is a graph of positive duty cycle results of flow assay ZZ3 TCR-T CD8 +CMV+ in comparative example 1.
FIG. 16 is a chart showing the statistical result of NFAT-fluorescence values of ZZ3-NFAT-Luc Jurkat detected by a microplate reader in comparative example 1.
Detailed Description
The endpoints of the ranges and any values disclosed herein are not limited to the precise range or value, and the range or value is to be understood as encompassing the value near the range or value. For numerical ranges, one or more new numerical ranges may be obtained in combination with each other between the endpoints of each range, between the endpoint of each range and the individual point value, and between the individual point value, and are to be considered as specifically disclosed herein.
The term "T cell antigen receptor (TCR)" as used herein refers to a protein molecule that T cells recognize a target cell surface specific antigen. The variable regions (V regions) of the α and β chains of TCRs comprise complementarity-DETERMINING REGIONS (CDRs) and antibody Framework Regions (FR). The amino acid sequence of the CDRs determines the specificity of the antibody for binding to antigen, and the main role of FR is to stabilize the spatial configuration of the CDRs to facilitate binding between the CDRs and the antigenic determinants.
In the present invention, "TCR" is an abbreviated form of "T cell antigen receptor" and has the same meaning, "TCR-T cell" is an abbreviated form of "T cell containing TCR (molecule)" and has the same meaning, "HLA" is an abbreviated form of "human leukocyte antigen", and has the same meaning, "CMV" is an abbreviated form of "human cytomegalovirus", and has the same meaning, "MHC" is an abbreviated form of "major histocompatibility complex", and has the same meaning, "fP2A" is an abbreviated form of "furin SGSG p2A", and the same meaning of the above groups of terms may be used interchangeably.
With the development of ACT technology, researchers in the field have developed a variety of different immune cell therapies for the treatment and/or prevention of cancers and viral infectious diseases that are difficult to effectively treat with existing drugs. Such as CAR-T therapy, TCR-T cell therapy, and the like. Among other advantages over CAR-T therapies, TCR-T cell therapies are that TCR-T cells can recognize not only cell membrane antigens, but also intracellular antigens presented by peptide-major histocompatibility complexes, free of target cell surface antigen expression, thereby allowing for more extensive recognition of target antigens, inducing a more durable immune synapse formation process, TCR can also be activated by a single target antigen molecule, and are more sensitive to low copy number antigens than CAR-T. However, TCRs only recognize peptide-HLA and kill target cells with matched HLA alleles, and HLA typing is highly polymorphic and exhibits a more pronounced regional profile. Thus, when designing and screening TCR molecules in TCR therapy, the selection of HLA-typed epitopes that they can recognize and bind has a great impact on the therapeutic effect of the TCR molecule on patients in a particular region.
The inventors have also found in research that more research is currently focused on TCR-T therapies for cancer, especially solid tumor therapy, and less for TCR-T therapies for viral infectious diseases. Although some researchers developed some TCR molecules for CMV and corresponding TCR-T therapies, such as TCR molecules for CMV pp65 epitope disclosed in CN113121676a and TCR molecules for HCMV disclosed in CN111875698a, these currently developed TCR molecules for CMV are all specifically recognizing and binding to HLA-A x 02 epitope, which belongs to the high frequency HLa subtype of the european population, and is relatively low in the national population, thus not suitable for CMV treatment/prevention of the national population. Through a great deal of research, the inventor of the present invention found that a specific TCR molecule capable of specifically recognizing an HLA-A 11:01 subtype epitope (the HLa subtype is a high-frequency subtype of the population in China) targeting CMV can be obtained through screening, so that a product and a method more suitable for preventing and/or treating CMV in China can be further obtained. In addition, the inventor also discovers that through special design, after the TCR molecules are led into T cells in vitro, the expansion of specific T cells can be realized by a simpler method, so that the operation of the cell expansion step in TCR-T therapy is greatly simplified, and the large-scale application and popularization of the method are facilitated.
Based on the above findings, the first aspect of the present invention provides a T cell antigen receptor which specifically recognizes and binds to a human cytomegalovirus binding epitope comprising the amino acid sequence shown in SEQ ID No. 1.
ATVQGQNLK(SEQ ID NO:1)
SEQ ID NO. 1 is the amino acid sequence of the HLA-A 11:01CMV pp65 501-509 antigen complex (i.e., amino acid sequence 501-509 of the HLA-A 11:01 restrictive CMV pp65 epitope antigen complex). That is, the TCRs provided by the present invention can specifically recognize and bind to the CMV antigen peptide-MHC molecule complex, activate TCR-T cells, thereby producing high levels of cytokines and killing target cells. Generally, TCRs provided by the present invention bind specifically to antigenic peptides from CMV through presentation by MHC.
Preferably, the TCR is a soluble TCR.
The specific structure and sequence of the TCR provided by the invention are not particularly limited, and any TCR capable of specifically binding to an amino acid sequence comprising SEQ ID NO. 1 is within the scope of the invention. According to a preferred embodiment of the invention, the TCR comprises at least one alpha chain variable region and/or at least one beta chain variable region.
Preferably, the TCR is a heterodimer comprising at least one alpha chain variable region and at least one beta chain variable region.
According to some preferred embodiments of the invention, wherein the α -chain variable region comprises a complementarity determining region of an α -chain and the β -chain variable region comprises a complementarity determining region of a β -chain.
Complementarity determining regions refer to sequence segments of a TCR sequence that are capable of forming a precise complement with an HLA-antigen complex, such that the TCR molecule can specifically recognize the HLA-antigen complex. In the TCR sequence provided by the invention, the complementarity determining region in the alpha chain/beta chain can be a continuous amino acid sequence or a discontinuous amino acid sequence, so long as the TCR sequence can specifically recognize and combine with the amino acid sequence shown in SEQ ID NO. 1.
The inventors of the present invention have skillfully found in the study that when the complementarity determining region in the alpha chain/beta chain of the TCR molecule has a specific amino acid sequence, the ability to specifically recognize and bind to the target sequence (e.g., SEQ ID NO:1, etc.) is enhanced.
In order to provide a TCR with better target sequence specific recognition and binding properties, according to some preferred embodiments of the invention, the complementarity determining region of the alpha chain includes an amino acid sequence having at least 80% homology (e.g., homology may be 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.5%, 99.8%, 99.9%, 100%, or may be a range formed by any two of the above values and any intermediate value) with at least one of SEQ ID NO:2, SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:10, SEQ ID NO:11, and SEQ ID NO: 12.
VSGNPY(SEQ ID NO:2)
YITGDNLV(SEQ ID NO:3)
CAVRDMEGGNNARLMF(SEQ ID NO:4)
DRGSQS(SEQ ID NO:10)
IYSNGD(SEQ ID NO:11)
CAVKGGYNKLIF(SEQ ID NO:12)
Preferably, the complementarity determining region of the α -chain comprises the amino acid sequence set forth in at least one of SEQ ID NO. 2, SEQ ID NO. 3, SEQ ID NO. 4, SEQ ID NO. 10, SEQ ID NO. 11 and SEQ ID NO. 12.
According to some preferred embodiments of the invention, wherein the complementarity determining region of the β -strand comprises an amino acid sequence having at least 80% homology (e.g., homology may be 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.5%, 99.8%, 99.9%, 100%, or may also be a range formed by any two of the above values and any intermediate value) to at least one of SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:13, SEQ ID NO:14 and SEQ ID NO: 15.
SNHLY(SEQ ID NO:5)
FYNNEI(SEQ ID NO:6)
CASSEAYGGYNEQFF(SEQ ID NO:7)
SGHRS(SEQ ID NO:13)
YFSETQ(SEQ ID NO:14)
CASSLGGEGDRPQHF(SEQ ID NO:15)
Preferably, the complementarity determining region of the β strand comprises an amino acid sequence set forth in at least one of SEQ ID NO. 5, SEQ ID NO. 6, SEQ ID NO. 7, SEQ ID NO. 13, SEQ ID NO. 14 and SEQ ID NO. 15.
According to some preferred embodiments of the invention, the complementarity determining region of the α -chain comprises three discrete amino acid sequences designated as CDR1 α, CDR2 α, CDR3 α, respectively, wherein CDR1 α comprises an amino acid sequence having at least 80% homology (e.g., 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.5%, 99.8%, 99.9%, 100%, or a range of any two values described above) with the amino acid sequence shown in SEQ ID NO:2 and/or SEQ ID NO:10, or alternatively, any two values described above, CDR2 α comprises an amino acid sequence having at least 80% homology (e.g., 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99.5%, 99.8%, 99.9%, 100%, or alternatively, a range of any two values described above, or a range of any two values described above) with the amino acid sequence shown in SEQ ID NO:3 and/or SEQ ID NO:11, or amino acid sequence having at least 80% homology (e.g., 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 99.5%, 99.8%, 99.9%, 100%, or alternatively, or a range of any two values described above, or alternatively, with the amino acid sequence shown in any two values described above, or alternatively, as SEQ ID NO: 11.
Preferably, CDR 1. Alpha. Comprises the amino acid sequence shown in SEQ ID NO.2 and/or SEQ ID NO. 10, CDR 2. Alpha. Comprises the amino acid sequence shown in SEQ ID NO. 3 and/or SEQ ID NO. 11, and CDR 3. Alpha. Comprises the amino acid sequence shown in SEQ ID NO. 4 and/or SEQ ID NO. 12.
More preferably, the amino acid sequence of CDR 1. Alpha. Is shown in SEQ ID NO. 2 and/or SEQ ID NO. 10, the amino acid sequence of CDR 2. Alpha. Is shown in SEQ ID NO. 3 and/or SEQ ID NO. 11, and the amino acid sequence of CDR 3. Alpha. Is shown in SEQ ID NO.4 and/or SEQ ID NO. 12.
According to some preferred embodiments of the invention, the complementarity determining region of the β -strand comprises three discrete amino acid sequences designated as CDR1 β, CDR2 β, CDR3 β, respectively, wherein CDR1 β comprises an amino acid sequence having at least 80% homology (e.g., 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.5%, 99.8%, 99.9%, 100%, or a range of any two values described above) with the amino acid sequence shown in SEQ ID NO:5 and/or SEQ ID NO:13, or alternatively, any two values described above, CDR2 β comprises an amino acid sequence having at least 80% homology (e.g., 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99.5%, 99.8%, 99.9%, 100%, or alternatively, a range of any two values described above, or a range of any two values described above) with the amino acid sequence shown in SEQ ID NO:6 and/or SEQ ID NO:14, or an amino acid sequence having at least 80% homology (e.g., 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 99.5%, 99.8%, 99.9%, 100%, or alternatively, or a range of any two values described above, or alternatively, with the amino acid sequence shown in any two values described above, or alternatively, as any two values described herein.
Preferably, CDR 1. Beta. Comprises the amino acid sequence shown in SEQ ID NO. 5 and/or SEQ ID NO. 13, CDR 2. Beta. Comprises the amino acid sequence shown in SEQ ID NO. 6 and/or SEQ ID NO. 14, and CDR 3. Beta. Comprises the amino acid sequence shown in SEQ ID NO. 7 and/or SEQ ID NO. 15.
More preferably, the amino acid sequence of CDR 1. Beta. Is shown in SEQ ID NO. 5 and/or SEQ ID NO. 13, the amino acid sequence of CDR 2. Beta. Is shown in SEQ ID NO. 6 and/or SEQ ID NO. 14, and the amino acid sequence of CDR 3. Beta. Is shown in SEQ ID NO. 7 and/or SEQ ID NO. 15.
The α chain variable region/β chain variable region included in the TCR provided by the present invention preferably includes complementarity determining regions composed of three discontinuous amino acid sequences, respectively, that is, the complementarity determining regions of the α chain variable region include the above CDR1α, CDR2α and CDR3α, and the complementarity determining regions of the β chain variable region include the above CDR1β, CDR2β and CDR3β, wherein the CDR1α, CDR2α, CDR3α and CDR1β, CDR2β and CDR3β may be arbitrarily combined according to the above sequences, so long as the TCR can specifically recognize and bind to HLA-A 11:01cmv pp65 501-509 antigen complex.
According to a preferred embodiment of the present invention, the complementarity determining regions of the alpha-chain variable region comprise the amino acid sequences shown in SEQ ID NOS.2-4, and the complementarity determining regions of the beta-chain variable region comprise the amino acid sequences shown in SEQ ID NOS.5-7.
According to a preferred embodiment of the present invention, the complementarity determining regions of the alpha-chain variable region comprise the amino acid sequences shown in SEQ ID NOS 10-12, and the complementarity determining regions of the beta-chain variable region comprise the amino acid sequences shown in SEQ ID NOS 13-15.
According to a particularly preferred embodiment of the invention, the alpha chain variable region comprises the amino acid sequence shown in SEQ ID NO. 8 and/or SEQ ID NO. 16.
MASAPISMLAMLFTLSGLRAQSVAQPEDQVNVAEGNPLTVKCTYSVSGNPYLFWYVQYPNRGLQFLLKYITGDNLVKGSYGFEAEFNKSQTSFHLKKPSALVSDSALYFCAVRDMEGGNNARLMFGDGTQLVVKPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPESSCDVKLVEKSFETDTNLNFQNLSVIGFRILLLKVAGFNLLMTLRLWSSRAKRSGSG(SEQ ID NO:8)
MKSLRVLLVILWLQLSWVWSQQKEVEQNSGPLSVPEGAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMFIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVKGGYNKLIFGAGTRLAVHPYIQNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKETNATYPSSDVPCDATLTEKSFETDMNLNFQNLSVMGLRILLLKVAGFNLLMTLRLWSSRAKRSGSG(SEQ ID NO:16)
According to a particularly preferred embodiment of the invention, the β chain variable region comprises the amino acid sequence shown in SEQ ID NO. 9 and/or SEQ ID NO. 17.
MDTWLVCWAIFSLLKAGLTEPEVTQTPSHQVTQMGQEVILRCVPISNHLYFYWYRQILGQKVEFLVSFYNNEISEKSEIFDDQFSVERPDGSNFTLKIRSTKLEDSAMYFCASSEAYGGYNEQFFGPGTRLTVLEDLKNVFPPKVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYCLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRADCGFTSESYQQGVLSATILYEILLGKATLYAVLVSALVLMAMVKRKDSRG(SEQ ID NO:9)
MGSRLLCWVLLCLLGAGPVKAGVTQTPRYLIKTRGQQVTLSCSPISGHRSVSWYQQTPGQGLQFLFEYFSETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALYLCASSLGGEGDRPQHFGDGTRLSILEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRADCGITSASYHQGVLSATILYEILLGKATLYAVLVSGLVLMAMVKKKNS(SEQ ID NO:17)
Preferably, in the TCR, the amino acid sequence of the alpha chain variable region is shown in SEQ ID NO. 8, and the amino acid sequence of the beta chain variable region is shown in SEQ ID NO. 9.
Preferably, in the TCR, the amino acid sequence of the alpha chain variable region is shown as SEQ ID NO. 16 and the amino acid sequence of the beta chain variable region is shown as SEQ ID NO. 17.
In the TCRs provided by the invention, the α chain variable region and the β chain variable region may be joined by any means common to the art of joining α chain variable regions and β chain variable regions of TCR molecules to form a complete heterodimeric TCR molecule.
According to some preferred embodiments of the invention, wherein the TCR the α chain variable region is directly linked or indirectly linked to the β chain variable region. Direct linkage refers to a linkage in which the amino acid sequences of the α -chain variable region and the β -chain variable region are directly linked (e.g., linked by disulfide bonds or the like), indirect linkage refers to a linkage between the α -chain variable region and the β -chain variable region by other amino acid sequences (which may be generally referred to as "linkage sequences"), e.g., in which the α -chain variable region and the β -chain variable region are linked to different segments of the linkage sequence by disulfide bonds or the like, or in which the α -chain variable region and the β -chain variable region are both linked to the same segment of the linkage sequence by disulfide bonds or the like.
Preferably, in the TCR, the α chain variable region is indirectly linked to the β chain variable region.
According to some preferred embodiments of the present invention, wherein the alpha chain variable region may be linked to the beta chain variable region by fp2A sequence (amino acid sequence shown in SEQ ID NO: 55).
SGSGATNFSLLKQAGDVEENPGP(SEQ ID NO:55)
The present invention provides TCR molecules in which the alpha and beta chain constant region sequences are not particularly limited, so long as they are capable of binding to the alpha and beta chain variable regions having the characteristics described above to form a stable TCR molecule having the desired functions of the present invention.
To increase exogenous TCR expression efficiency, according to a preferred embodiment of the invention, the TCR comprises an alpha chain constant region comprising an amino acid sequence having at least 80% homology to SEQ ID NO:26 (e.g., homology may be 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.5%, 99.8%, 99.9%, 100%, or may be in a range of any two values described above and any intermediate value), and a beta chain constant region comprising an amino acid sequence having at least 80% homology to SEQ ID NO:27 (e.g., homology may be 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.5%, 99.8%, 99.9%, 100%, or may be in a range of any two values described above and any intermediate value).
IQNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKETNATYPSSDVPCDATLTEKSFETDMNLNFQNLSVMGLRILLLKVAGFNLLMTLRLWSS(SEQ ID NO:26)
EDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRADCGITSASYHQGVLSATILYEILLGKATLYAVLVSGLVLMAMVKKKNS(SEQ ID NO:27)
According to a particularly preferred embodiment of the invention, the TCR comprises an alpha chain constant region, an alpha chain variable region and a beta chain constant region, a beta chain variable region, the amino acid sequence of the alpha chain variable region being shown in SEQ ID NO. 8, the amino acid sequence of the alpha chain constant region being shown in SEQ ID NO. 26, the amino acid sequence of the beta chain variable region being shown in SEQ ID NO. 9, the amino acid sequence of the beta chain constant region being shown in SEQ ID NO. 27.
Preferably, the amino acid sequence of the TCR is shown in SEQ ID NO. 52.
According to a particularly preferred embodiment of the invention, the TCR comprises an alpha chain constant region, an alpha chain variable region and a beta chain constant region, the amino acid sequence of the alpha chain variable region being shown in SEQ ID NO. 16, the amino acid sequence of the alpha chain constant region being shown in SEQ ID NO. 26, the amino acid sequence of the beta chain variable region being shown in SEQ ID NO. 17, the amino acid sequence of the beta chain constant region being shown in SEQ ID NO. 27.
Preferably, the amino acid sequence of the TCR is shown in SEQ ID NO. 53.
In a second aspect the invention provides a nucleic acid molecule encoding the T cell antigen receptor of the first aspect.
Any nucleic acid molecule (including DNA and RNA) capable of encoding a TCR provided by the invention is within the scope of the invention. Based on the degeneracy of the codons, one skilled in the art can design and synthesize different nucleic acid molecules capable of encoding TCRs provided by the present invention by themselves, based on the characteristics of the aforementioned TCR sequences.
According to a preferred embodiment of the invention, wherein the nucleic acid molecule comprises a nucleotide sequence as shown in at least one of SEQ ID NO:28 (encoding CDR 1. Alpha. As shown in SEQ ID NO: 2), SEQ ID NO:29 (encoding CDR 2. Alpha. As shown in SEQ ID NO: 3), SEQ ID NO:30 (encoding CDR 3. Alpha. As shown in SEQ ID NO: 4), SEQ ID NO:36 (encoding CDR 1. Alpha. As shown in SEQ ID NO: 10), SEQ ID NO:37 (encoding CDR 2. Alpha. As shown in SEQ ID NO: 11), SEQ ID NO:38 (encoding CDR 3. Alpha. As shown in SEQ ID NO: 12).
GTCTCCGGAAACCCCTAT(SEQ ID NO:28)
TACATCACTGGTGATAACCTGGTG(SEQ ID NO:29)
TGTGCGGTGCGTGACATGGAAGGGGGTAATAACGCTCGGCTGATGTTT(SEQ ID NO:30)
GACCGTGGCAGTCAGAGC(SEQ ID NO:36)
ATCTACAGCAATGGCGAT(SEQ ID NO:37)
TGCGCCGTTAAAGGGGGCTACAACAAGCTGATCTTC(SEQ ID NO:38)
According to a preferred embodiment of the present invention, wherein the nucleic acid molecule further comprises at least one of the nucleotide sequences shown in SEQ ID NO:31 (encoding CDR1β shown in SEQ ID NO: 5), SEQ ID NO:32 (encoding CDR2β shown in SEQ ID NO: 6), SEQ ID NO:33 (encoding CDR3β shown in SEQ ID NO: 7), SEQ ID NO:39 (encoding CDR1β shown in SEQ ID NO: 13), SEQ ID NO:40 (encoding CDR2β shown in SEQ ID NO: 14), SEQ ID NO:41 (encoding CDR3β shown in SEQ ID NO: 15).
AGCAACCACCTCTAC(SEQ ID NO:31)
TTTTACAACAACGAGATC(SEQ ID NO:32)
TGCGCCTCTTCCGAAGCCTACGGTGGCTACAACGAGCAGTTTTTC(SEQ ID NO:33)
TCTGGCCACCGCTCT(SEQ ID NO:39)
TACTTCTCCGAGACCCAG(SEQ ID NO:40)
TGCGCCTCCTCCTTGGGCGGGGAGGGCGACAGGCCTCAGCACTTT(SEQ ID NO:41)
According to a preferred embodiment of the present invention, wherein the nucleic acid molecule comprises a nucleotide sequence as shown in at least one of SEQ ID NO. 34 (encoding the alpha chain variable region of SEQ ID NO. 8), SEQ ID NO. 35 (encoding the beta chain variable region of SEQ ID NO. 9), SEQ ID NO. 42 (encoding the alpha chain variable region of SEQ ID NO. 16) and SEQ ID NO. 43 (encoding the beta chain variable region of SEQ ID NO. 17).
ATGGCGTCTGCTCCTATCAGCATGCTAGCTATGTTGTTCACCTTGAGCGGATTGAGGGCTCAGTCCGTAGCGCAGCCGGAGGATCAGGTCAATGTGGCGGAGGGCAATCCCCTGACCGTTAAGTGCACTTACAGCGTCTCCGGAAACCCCTATCTGTTTTGGTACGTGCAGTACCCCAACAGGGGTCTGCAGTTCCTGTTAAAGTACATCACTGGTGATAACCTGGTGAAAGGCAGTTACGGCTTCGAGGCCGAGTTCAACAAGTCCCAGACCTCCTTTCACCTGAAGAAGCCCTCGGCTCTGGTCTCCGACTCTGCGCTGTACTTCTGTGCGGTGCGTGACATGGAAGGGGGTAATAACGCTCGGCTGATGTTTGGCGACGGGACCCAGCTGGTAGTCAAGCCCAACATCCAGAATCCAGATCCAGCCGTGTACCAGCTGCGCGACTCCAAAAGCAGCGACAAATCGGTTTGTCTATTCACCGACTTCGACTCCCAAACTAATGTCAGTCAGTCCAAGGACTCTGACGTGTACATCACCGACAAGACCGTGCTGGACATGCGGTCCATGGATTTCAAGTCCAACTCCGCCGTAGCATGGTCTAACAAGAGCGACTTTGCCTGCGCCAACGCGTTCAACAACTCTATCATCCCCGAGGACACGTTCTTTCCCTCTCCGGAGTCCTCCTGCGACGTGAAGCTCGTGGAGAAATCTTTTGAGACCGACACAAATTTGAACTTCCAGAACCTGTCAGTCATCGGCTTCCGCATCCTTCTGTTGAAGGTCGCGGGATTCAACCTCCTGATGACCCTCCGCCTTTGGTCTTCCCGGGCCAAGCGCAGCGGTTCGGGC(SEQ ID NO:34)
ATGGATACCTGGCTGGTGTGCTGGGCTATTTTCTCCCTGCTCAAGGCCGGTCTCACCGAACCGGAGGTGACCCAGACTCCCTCTCACCAGGTCACCCAGATGGGCCAGGAGGTGATTTTGCGCTGCGTGCCCATCAGCAACCACCTCTACTTCTATTGGTACCGCCAAATCCTAGGCCAGAAAGTGGAGTTCCTGGTGTCCTTTTACAACAACGAGATCAGCGAGAAAAGCGAGATTTTCGATGACCAGTTCAGCGTGGAGCGCCCTGACGGCTCCAACTTTACGCTCAAGATCCGATCCACCAAGCTGGAGGACTCGGCAATGTATTTCTGCGCCTCTTCCGAAGCCTACGGTGGCTACAACGAGCAGTTTTTCGGCCCGGGGACCCGCCTGACTGTGCTGGAGGACCTTAAGAACGTGTTCCCACCGAAGGTGGCGGTTTTCGAGCCCAGCGAGGCCGAGATAAGCCACACTCAGAAGGCGACTCTCGTCTGTCTGGCGACAGGCTTCTACCCTGATCATGTGGAGCTGAGTTGGTGGGTCAACGGTAAGGAGGTGCATTCGGGCGTGTCTACCGATCCTCAGCCACTTAAAGAACAGCCTGCCCTGAACGACTCTCGTTATTGTCTGTCATCCCGCCTGCGCGTCTCTGCCACGTTCTGGCAGAACCCGCGCAACCACTTCCGTTGCCAGGTGCAATTCTACGGATTATCCGAGAATGACGAGTGGACCCAGGACCGCGCCAAGCCTGTGACCCAGATCGTCTCTGCTGAAGCATGGGGCCGAGCAGACTGCGGGTTCACGTCTGAGAGCTATCAGCAGGGAGTGCTGTCCGCTACCATCTTGTACGAGATTCTGCTGGGCAAGGCTACACTGTACGCAGTGCTGGTTTCCGCCCTTGTACTGATGGCCATGGTGAAGCGCAAGGACAGTAGAGGC(SEQ ID NO:35)
ATGAAATCTCTTCGCGTGCTGCTGGTGATTTTGTGGCTCCAGCTGTCTTGGGTCTGGTCTCAGCAGAAGGAGGTGGAACAGAACTCCGGACCTTTGTCGGTGCCGGAGGGCGCCATTGCTTCCCTCAACTGCACTTATTCTGACCGTGGCAGTCAGAGCTTCTTTTGGTACCGCCAGTACAGTGGCAAGTCGCCGGAGCTGATCATGTTTATCTACAGCAATGGCGATAAGGAGGATGGGCGCTTCACGGCGCAGCTTAACAAAGCTTCCCAGTACGTGAGCCTTCTCATTCGCGACAGCCAGCCGAGTGACTCCGCAACCTACCTGTGCGCCGTTAAAGGGGGCTACAACAAGCTGATCTTCGGTGCCGGCACCCGCCTGGCCGTGCACCCGTATATCCAGAACCCCGAGCCAGCGGTGTACCAGTTGAAGGACCCGCGCTCGCAGGACTCCACCCTGTGCCTGTTCACCGATTTCGACTCCCAAATTAACGTGCCAAAGACTATGGAGAGCGGTACGTTTATCACCGACAAAACCGTGCTGGACATGAAGGCCATGGATTCCAAGAGCAACGGCGCTATCGCTTGGTCCAACCAGACCTCCTTCACCTGCCAGGACATCTTCAAGGAGACCAATGCCACCTATCCTAGTTCCGACGTGCCCTGTGACGCAACACTAACCGAGAAGTCATTCGAGACCGACATGAACCTCAACTTCCAGAACCTGTCTGTGATGGGCCTGCGCATCCTGCTGCTCAAGGTTGCCGGCTTCAACCTGCTGATGACCCTCCGGCTTTGGTCTTCGCGTGCCAAGCGCAGCGGTTCCGGC(SEQ ID NO:42)
ATGGGGTCCCGCCTGCTGTGCTGGGTACTCCTGTGCCTGCTGGGAGCTGGACCAGTGAAGGCTGGAGTTACTCAGACTCCCCGTTACCTCATAAAAACGCGTGGTCAGCAGGTCACTCTGTCATGCAGCCCCATCTCTGGCCACCGCTCTGTATCGTGGTACCAGCAGACACCTGGGCAGGGTCTGCAGTTCCTGTTTGAGTACTTCTCCGAGACCCAGCGCAACAAGGGCAACTTCCCGGGTAGATTCTCTGGGCGACAGTTCAGCAATAGCCGGTCTGAGATGAACGTGTCCACCCTCGAGCTTGGTGATTCCGCTCTGTACCTGTGCGCCTCCTCCTTGGGCGGGGAGGGCGACAGGCCTCAGCACTTTGGTGACGGCACTCGACTTAGTATCCTGGAGGACCTGCGCAATGTGACCCCACCCAAGGTGTCGCTGTTCGAGCCCTCCAAGGCAGAGATCGCCAACAAGCAGAAGGCGACTCTGGTCTGTCTGGCGCGTGGCTTTTTCCCCGACCATGTCGAGCTGAGCTGGTGGGTCAACGGTAAAGAGGTCCACTCAGGCGTCTCGACCGACCCCCAGGCCTACAAGGAGAGCAACTATTCCTACTGCTTGTCTTCCAGATTACGGGTGAGCGCAACTTTTTGGCACAACCCCCGCAACCACTTTAGGTGTCAGGTGCAGTTCCATGGACTTTCTGAAGAAGATAAATGGCCTGAAGGGAGCCCTAAGCCCGTCACCCAGAACATCAGCGCCGAGGCCTGGGGCCGCGCGGACTGTGGCATCACCTCCGCTAGCTACCACCAAGGCGTGCTGTCTGCGACCATCCTGTACGAGATTCTGCTAGGCAAAGCTACACTGTACGCCGTGTTGGTGAGCGGCCTGGTCCTGATGGCCATGGTGAAGAAGAAGAACTCC(SEQ ID NO:43) Preferably, the nucleic acid molecule further comprises at least one of the nucleotide sequences shown as SEQ ID NO. 56 (encoding the alpha chain constant region shown as SEQ ID NO. 26) and SEQ ID NO. 57 (encoding the beta chain constant region shown as SEQ ID NO. 27).
ATCCAGAACCCCGAGCCCGCCGTGTACCAGCTGAAGGACCCCAGGAGCCAGGACAGCACCCTGTGCCTGTTCACCGACTTCGACAGCCAGATCAACGTGCCCAAGACCATGGAGAGCGGCACCTTCATCACCGACAAGACCGTGCTGGACATGAAGGCCATGGACAGCAAGAGCAACGGCGCCATCGCCTGGAGCAACCAGACCAGCTTCACCTGCCAGGACATCTTCAAGGAGACCAACGCCACCTACCCCAGCAGCGACGTGCCCTGCGACGCCACCCTGACCGAGAAGAGCTTCGAGACCGACATGAACCTGAACTTCCAGAACCTGAGCGTGATGGGCCTGAGGATCCTGCTGCTGAAGGTGGCCGGCTTCAACCTGCTGATGACCCTGAGGCTGTGGAGCAGC(SEQ ID NO:56)
GAGGACCTGAGGAACGTGACCCCCCCCAAGGTGAGCCTGTTCGAGCCCAGCAAGGCCGAGATCGCCAACAAGCAGAAGGCCACCCTGGTGTGCCTGGCCAGGGGCTTCTTCCCCGACCACGTGGAGCTGAGCTGGTGGGTGAACGGCAAGGAGGTGCACAGCGGCGTGAGCACCGACCCCCAGGCCTACAAGGAGAGCAACTACAGCTACTGCCTGAGCAGCAGGCTGAGGGTGAGCGCCACCTTCTGGCACAACCCCAGGAACCACTTCAGGTGCCAGGTGCAGTTCCACGGCCTGAGCGAGGAGGACAAGTGGCCCGAGGGCAGCCCCAAGCCCGTGACCCAGAACATCAGCGCCGAGGCCTGGGGCAGGGCCGACTGCGGCATCACCAGCGCCAGCTACCACCAGGGCGTGCTGAGCGCCACCATCCTGTACGAGATCCTGCTGGGCAAGGCCACCCTGTACGCCGTGCTGGTGAGCGGCCTGGTGCTGATGGCCATGGTGAAGAAGAAGAACAGC(SEQ ID NO:57)
According to a particularly preferred embodiment of the invention, the nucleotide sequence of the nucleic acid molecule is shown in SEQ ID NO. 58.
ATGGCGTCTGCTCCTATCAGCATGCTAGCTATGTTGTTCACCTTGAGCGGATTGAGGGCTCAGTCCGTAGCGCAGCCGGAGGATCAGGTCAATGTGGCGGAGGGCAATCCCCTGACCGTTAAGTGCACTTACAGCGTCTCCGGAAACCCCTATCTGTTTTGGTACGTGCAGTACCCCAACAGGGGTCTGCAGTTCCTGTTAAAGTACATCACTGGTGATAACCTGGTGAAAGGCAGTTACGGCTTCGAGGCCGAGTTCAACAAGTCCCAGACCTCCTTTCACCTGAAGAAGCCCTCGGCTCTGGTCTCCGACTCTGCGCTGTACTTCTGTGCGGTGCGTGACATGGAAGGGGGTAATAACGCTCGGCTGATGTTTGGCGACGGGACCCAGCTGGTAGTCAAGCCCAACATCCAGAATCCAGATCCAGCCGTGTACCAGCTGCGCGACTCCAAAAGCAGCGACAAATCGGTTTGTCTATTCACCGACTTCGACTCCCAAACTAATGTCAGTCAGTCCAAGGACTCTGACGTGTACATCACCGACAAGACCGTGCTGGACATGCGGTCCATGGATTTCAAGTCCAACTCCGCCGTAGCATGGTCTAACAAGAGCGACTTTGCCTGCGCCAACGCGTTCAACAACTCTATCATCCCCGAGGACACGTTCTTTCCCTCTCCGGAGTCCTCCTGCGACGTGAAGCTCGTGGAGAAATCTTTTGAGACCGACACAAATTTGAACTTCCAGAACCTGTCAGTCATCGGCTTCCGCATCCTTCTGTTGAAGGTCGCGGGATTCAACCTCCTGATGACCCTCCGCCTTTGGTCTTCCCGGGCCAAGCGCAGCGGTTCGGGCGCTACCAACTTTTCGTTGCTGAAGCAGGCCGGGGATGTGGAGGAGAACCCGGGCCCTATGGATACCTGGCTGGTGTGCTGGGCTATTTTCTCCCTGCTCAAGGCCGGTCTCACCGAACCGGAGGTGACCCAGACTCCCTCTCACCAGGTCACCCAGATGGGCCAGGAGGTGATTTTGCGCTGCGTGCCCATCAGCAACCACCTCTACTTCTATTGGTACCGCCAAATCCTAGGCCAGAAAGTGGAGTTCCTGGTGTCCTTTTACAACAACGAGATCAGCGAGAAAAGCGAGATTTTCGATGACCAGTTCAGCGTGGAGCGCCCTGACGGCTCCAACTTTACGCTCAAGATCCGATCCACCAAGCTGGAGGACTCGGCAATGTATTTCTGCGCCTCTTCCGAAGCCTACGGTGGCTACAACGAGCAGTTTTTCGGCCCGGGGACCCGCCTGACTGTGCTGGAGGACCTTAAGAACGTGTTCCCACCGAAGGTGGCGGTTTTCGAGCCCAGCGAGGCCGAGATAAGCCACACTCAGAAGGCGACTCTCGTCTGTCTGGCGACAGGCTTCTACCCTGATCATGTGGAGCTGAGTTGGTGGGTCAACGGTAAGGAGGTGCATTCGGGCGTGTCTACCGATCCTCAGCCACTTAAAGAACAGCCTGCCCTGAACGACTCTCGTTATTGTCTGTCATCCCGCCTGCGCGTCTCTGCCACGTTCTGGCAGAACCCGCGCAACCACTTCCGTTGCCAGGTGCAATTCTACGGATTATCCGAGAATGACGAGTGGACCCAGGACCGCGCCAAGCCTGTGACCCAGATCGTCTCTGCTGAAGCATGGGGCCGAGCAGACTGCGGGTTCACGTCTGAGAGCTATCAGCAGGGAGTGCTGTCCGCTACCATCTTGTACGAGATTCTGCTGGGCAAGGCTACACTGTACGCAGTGCTGGTTTCCGCCCTTGTACTGATGGCCATGGTGAAGCGCAAGGACAGTAGAGGC(SEQ ID NO:58)
According to another particularly preferred embodiment of the invention, the nucleotide sequence of the nucleic acid molecule is shown as SEQ ID NO. 59.
ATGAAATCTCTTCGCGTGCTGCTGGTGATTTTGTGGCTCCAGCTGTCTTGGGTCTGGTCTCAGCAGAAGGAGGTGGAACAGAACTCCGGACCTTTGTCGGTGCCGGAGGGCGCCATTGCTTCCCTCAACTGCACTTATTCTGACCGTGGCAGTCAGAGCTTCTTTTGGTACCGCCAGTACAGTGGCAAGTCGCCGGAGCTGATCATGTTTATCTACAGCAATGGCGATAAGGAGGATGGGCGCTTCACGGCGCAGCTTAACAAAGCTTCCCAGTACGTGAGCCTTCTCATTCGCGACAGCCAGCCGAGTGACTCCGCAACCTACCTGTGCGCCGTTAAAGGGGGCTACAACAAGCTGATCTTCGGTGCCGGCACCCGCCTGGCCGTGCACCCGTATATCCAGAACCCCGAGCCAGCGGTGTACCAGTTGAAGGACCCGCGCTCGCAGGACTCCACCCTGTGCCTGTTCACCGATTTCGACTCCCAAATTAACGTGCCAAAGACTATGGAGAGCGGTACGTTTATCACCGACAAAACCGTGCTGGACATGAAGGCCATGGATTCCAAGAGCAACGGCGCTATCGCTTGGTCCAACCAGACCTCCTTCACCTGCCAGGACATCTTCAAGGAGACCAATGCCACCTATCCTAGTTCCGACGTGCCCTGTGACGCAACACTAACCGAGAAGTCATTCGAGACCGACATGAACCTCAACTTCCAGAACCTGTCTGTGATGGGCCTGCGCATCCTGCTGCTCAAGGTTGCCGGCTTCAACCTGCTGATGACCCTCCGGCTTTGGTCTTCGCGTGCCAAGCGCAGCGGTTCCGGCGCGACGAATTTCTCCTTACTAAAGCAAGCGGGAGACGTGGAGGAGAACCCGGGGCCCATGGGGTCCCGCCTGCTGTGCTGGGTACTCCTGTGCCTGCTGGGAGCTGGACCAGTGAAGGCTGGAGTTACTCAGACTCCCCGTTACCTCATAAAAACGCGTGGTCAGCAGGTCACTCTGTCATGCAGCCCCATCTCTGGCCACCGCTCTGTATCGTGGTACCAGCAGACACCTGGGCAGGGTCTGCAGTTCCTGTTTGAGTACTTCTCCGAGACCCAGCGCAACAAGGGCAACTTCCCGGGTAGATTCTCTGGGCGACAGTTCAGCAATAGCCGGTCTGAGATGAACGTGTCCACCCTCGAGCTTGGTGATTCCGCTCTGTACCTGTGCGCCTCCTCCTTGGGCGGGGAGGGCGACAGGCCTCAGCACTTTGGTGACGGCACTCGACTTAGTATCCTGGAGGACCTGCGCAATGTGACCCCACCCAAGGTGTCGCTGTTCGAGCCCTCCAAGGCAGAGATCGCCAACAAGCAGAAGGCGACTCTGGTCTGTCTGGCGCGTGGCTTTTTCCCCGACCATGTCGAGCTGAGCTGGTGGGTCAACGGTAAAGAGGTCCACTCAGGCGTCTCGACCGACCCCCAGGCCTACAAGGAGAGCAACTATTCCTACTGCTTGTCTTCCAGATTACGGGTGAGCGCAACTTTTTGGCACAACCCCCGCAACCACTTTAGGTGTCAGGTGCAGTTCCATGGACTTTCTGAAGAAGATAAATGGCCTGAAGGGAGCCCTAAGCCCGTCACCCAGAACATCAGCGCCGAGGCCTGGGGCCGCGCGGACTGTGGCATCACCTCCGCTAGCTACCACCAAGGCGTGCTGTCTGCGACCATCCTGTACGAGATTCTGCTAGGCAAAGCTACACTGTACGCCGTGTTGGTGAGCGGCCTGGTCCTGATGGCCATGGTGAAGAAGAAGAACTCC(SEQ ID NO:59)
In a third aspect the invention provides a nucleic acid expression vector comprising a coding gene and a vector sequence, wherein the coding gene is provided by a nucleic acid molecule according to the second aspect.
The nucleic acid expression vector provided by the invention is used for expressing the TCR provided by the invention in vitro. That is, expression of the TCR provided by the present invention can be achieved by introducing the nucleic acid expression vector into cells in vitro.
In the nucleic acid expression vector provided by the invention, the coding gene is a nucleic acid sequence for coding and expressing the TCR molecule provided by the invention, and the characteristics are as described above and are not described in detail herein. The vector sequence is typically provided by the original vector (typically a plasmid vector) of the nucleic acid expression vector, which functions to load the coding gene and introduce it into the cell to cause expression of the TCR molecule in the cell. Any vector commonly used in the art to construct in vitro expression systems may be suitable for use in the present invention.
The invention further provides a construction method of the nucleic acid expression vector. Any method for constructing an in vitro expression vector common in the art can be suitable for constructing the nucleic acid expression vector provided by the invention, so long as the encoding gene can be introduced into a vector sequence and can be expressed in vitro cells, and detailed description is omitted.
In a fourth aspect the invention provides a vector cell comprising the T cell antigen receptor of the first aspect and/or comprising the nucleic acid molecule of the second aspect and/or comprising the nucleic acid expression vector of the third aspect.
The vector cell provided by the invention can be used for expressing the TCR molecule provided by the invention in vitro, and can also be used in a corresponding CMV prevention/treatment method or used for preparing related medicines. Any cell common in the art that is capable of the above purpose may be suitable for the present invention. For example, T cells (particularly T cells derived from the patient's own body) may be selected as carrier cells and introduced with the TCR, nucleic acid molecule or nucleic acid expression vector described above for use in the preparation of cell pharmaceutical compositions for CMV therapy/prophylaxis and the like.
For another example, cells commonly used in the art for in vitro expression of proteins, such as prokaryotic expression vectors, may be selected as vector cells into which the above nucleic acid molecules or nucleic acid expression vectors are introduced to produce TCR molecules for introduction into T cells.
The invention further provides a preparation method of the carrier cell. Any method commonly used in the art for introducing a protein (e.g., a TCR of the invention), nucleic acid molecule or nucleic acid expression vector into a cell may be suitable for use in the invention, e.g., electrotransformation, lentiviral transfection, etc.
In a fifth aspect, the invention provides the use of a T cell antigen receptor according to the first aspect, and/or a nucleic acid molecule according to the second aspect, and/or a nucleic acid expression vector according to the third aspect, and/or a vector cell according to the fourth aspect, for the preparation of a medicament and/or vaccine for the prophylaxis and/or treatment of a disease caused by human cytomegalovirus infection.
The specific pharmaceutical forms and components of the drug are not particularly limited as long as the drug contains at least one of the T cell antigen receptor, the nucleic acid molecule, the nucleic acid expression vector and the vector cell provided by the invention.
According to an exemplary preferred embodiment of the present invention, wherein the medicament/vaccine may comprise a fusion protein as (major) active ingredient, the fusion protein comprising the aforementioned TCR.
Preferably, the fusion protein may further comprise an antibody.
More preferably, the antibodies include single chain antibodies (SINGLE CHAIN FRAGMENT variable, scFv), monoclonal antibodies, chimeric antibodies, multispecific antibodies. Preferably a single chain antibody.
More preferably, the antibody is a humanized antibody.
Preferably, the fusion protein may also contain a CD3 agonist.
Preferably, the fusion protein may also contain antibodies specifically targeting CD 3.
In a sixth aspect, the invention provides a pharmaceutical composition for preventing and/or treating a disease caused by human cytomegalovirus infection, comprising the T cell antigen receptor of the first aspect, and/or the nucleic acid molecule of the second aspect, and/or the nucleic acid expression vector of the third aspect, and/or the vector cell of the fourth aspect.
In the pharmaceutical composition provided by the invention, the TCR, the nucleic acid molecule, the nucleic acid expression vector and the vector cell can be used as (one of) the (main) active components of the pharmaceutical composition. According to some preferred embodiments of the present invention, pharmaceutically acceptable excipients (e.g., buffers, preservatives, stabilizers, etc.) may also be included in the pharmaceutical composition.
According to some preferred embodiments of the present invention, other active ingredients may be included in the pharmaceutical composition, for example, drugs or the like (e.g., antiviral drugs, antibodies, vaccine formulations, etc. useful for preventing/treating CMV infection) that have no or substantially no adverse effect on their effects and that do not have (severe) side effects on humans when used together with the TCRs, nucleic acid molecules, nucleic acid expression vectors, and vector cells provided herein.
The present invention will be described in detail by examples. It should be understood that the following examples are illustrative only and are not intended to limit the invention.
In the following examples, experiments involving human sample collection and detection have been informed by relevant persons. Unless specifically stated, reagents/materials used were commercially available from either regular chemical/biological reagents or material suppliers, and the purity of the reagents was analytically pure.
In the examples below, the operating temperatures were room temperature (25.+ -. 5 ℃ C.) without specific explanation.
Example 1
The present example is presented to demonstrate the preparation, expansion and killing of TCR-T cells provided by the present invention.
Preparation and expansion of TCR-T cells
1. Experimental materials
2. Experimental method
Chemically synthesized CMV epitope peptides were used to stimulate Peripheral Blood Mononuclear Cells (PBMCs) derived from HLA-A 11:01 healthy donors and patients with different cancer species. After 2 rounds of CMV epitope peptide stimulation, specific T cells were detected using flow assays and enzyme linked immunosorbent assay (Enzyme linked immunospot assay, ELISpot) to confirm that CMV specific T cells were obtained. The specific method comprises the following steps:
HLA-A 11:01 donor peripheral blood was collected and PBMCs were isolated from peripheral blood using density gradient centrifugation. The isolated PBMC were inoculated into an orifice plate at a constant cell density, and cultured with X-VIVO15 (LONZA) containing cytokines such as human serum, GM-CSF (Xiaomenbao bioengineering Co., ltd.) and IL-2 (Beijing Shuanglu pharmaceutical Co., ltd.).
Dissolving HLA-A 11:01CMV epitope peptide (gold srey; specific sequence is shown as SEQ ID NO: 1) by using X-VIVO15 to prepare CMV epitope peptide solution with concentration of 100 mug/mL, filtering and sterilizing for later use. Cells were cultured to day 2 and 4, each stimulated with one sterile CMV epitope peptide solution at a final concentration of 5 μg/mL.
The total cell culture cycle was about 14 days, cells were observed every 2-3 days during the culture, half-cell exchange was performed using the medium, and viable cell density, cell suspension volume and cell viability were recorded using a cell counter. On day 14, T cells were flow detected by staining with murine anti-human CD8 antibody (Biolegend) and HLA-A x 11:01cmv epitope tetramer (MBL). The experimental results are shown in FIG. 1. As can be seen by comparison with the control T cell group (without CMV epitope peptide stimulation), CMV-specific T cells were confirmed after stimulation with CMV polypeptide. The CD8 positive and tetramer positive T cell populations of interest were sorted out using a flow sorter.
And (3) performing ELISPot detection by taking IFN-gamma as a cytokine to be detected. A certain amount of cells were taken and washed with X-VIVO15 medium. After resuspension of cells with X-VIVO15 containing 10% FBS, cells were seeded in Elispot-IFN-gamma assay plates (Mabtech) at a cell number of 2X 10 4 per well. Antibody incubation and development were performed 18-24 hours after stimulation with 10 μg/mL CMV epitope peptide (MBL). The well plate was placed at room temperature in a shade and dark place, and after the well plate was naturally dried, the immunoblotches were imaged and read using c.t.ls6, and the results are detailed in fig. 2.
As can be seen from FIGS. 1 and 2, the specific T cell expansion method provided by the invention can obtain HLA-A 11:01CMV specific T cells, and compared with a control T cell group (A-C hole in FIG. 2) which is not stimulated by CMV epitope peptide, the stimulated CMV pp65 group (D-F hole in FIG. 2) can detect significantly more spots, which indicates that CD8 + T cells which are expanded by in vitro stimulation can specifically recognize CMV pp65 epitope peptide and secrete cytokines such as IFN-gamma.
Example 2
This example is presented to illustrate the construction of the in vitro transcribed plasmid vector and mRNA preparation of the TCR provided by the invention.
1. Experimental materials
Name of the name Manufacturer' s Goods number
Non-ribozyme water (non-DEPC treatment) Invitrogen AM9932
QIAGEN OneStep RT-PCR Kit(100) Qiagen 210212
Single cell sequence specific amplification kit Nanjinouzan Biotechnology Co., ltd P621-01
HotStarTaq Master Mix Kit(250) Qiagen 203443
Qubit 1X dsDNA HS Assay Kit Invitrogen Q33230
DL500DNA Marker TaKaRa 3590A
6×Loading Buffer TaKaRa 9156
2. Experimental method
Referring to the plasmid spectrogram of FIG. 3, a nucleic acid expression vector of TCR was constructed by inserting a coding gene of TCR (abbreviated as TCR. Alpha./. Beta. Coding gene) into pUC57 plasmid (Gonsrui) as a vector plasmid. Wherein the coding genes of TCR comprise alpha chain coding genes and beta chain coding genes, the alpha chain coding genes (TRA ORF part in the figure) comprise alpha chain variable region coding genes and alpha chain constant region coding genes, the beta chain coding genes (TRB ORF part in the figure) comprise beta chain variable region coding genes and beta chain constant region coding genes, and the alpha chain coding genes and the beta chain coding genes are connected through a 2A sequence (p 2A sequence) of an internal self-splitting porcine teschovirus (Porcine teschovirus), and the specific sequences are shown in Table 1 in detail.
TABLE 1
In vitro transcription plasmid vector construction, the TCR alpha/beta coding gene sequence (comprising BamHI, sacI cleavage site) synthesized by Nanjing Jinsrui company was cloned between BamHI, sacI cleavage site of pUC57 plasmid containing Kozak sequence (GCCACC) downstream of BamHI cleavage site and double stop codon sequence (TGATAA) upstream of SacI cleavage site by BamHI, sacI restriction enzyme cleavage.
MRNA preparation is carried out by using the constructed in vitro transcription plasmid vector and adopting the following method:
Linearizing in vitro transcription plasmid vector by adopting the system of Table 2, placing the reaction system at 50 ℃ for reaction overnight (not more than 18 h) after the configuration of the reaction system is completed, and heating to 80 ℃ for 20min after the reaction is completed to inactivate enzymes in the system.
TABLE 2
Name of the name Additive amount
Plasmid(s) 5μg
NEBufferTM r3.1 4μL
BspQI 2μL
Non-ribozyme water Final volume of 40. Mu.L
UsingDNA Clean Beads (DNA magnetic Beads) were used to purify linearized plasmids in the reaction products. After electrophoresis verification and concentration detection of the purified product, an in vitro transcription system was prepared according to table 3, and incubated at 37 ℃ for 2.5h after the preparation was completed. After the incubation was completed, 4. Mu.L of DNase I was added to the reaction system and incubated at 37℃for 15min to digest the transcribed DNA template.
TABLE 3 Table 3
Name of the name Additive amount
Template (purified linearization plasmid) 1μg
10×Transcrption Buffer 8μL
UTP solution 8μL
ATP solution 8μL
CTP solution 8μL
GTP solution 8μL
T7 RNA Polymerase Mix 8μL
RNase-free ddH 2 O Final volume of 80. Mu.L
UsingDNA Clean Beads (DNA magnetic Beads) purify the in vitro transcription products. After electrophoresis verification and concentration detection, 100 mug of purified product is added with a proper volume of non-ribozyme water to prepare 140 mug of RNA solution, and the RNA solution is heated for 5min at 65 ℃ and then is placed on ice to be cooled for 5min, thus obtaining the heat-denatured RNA solution. The capping system was then formulated as in table 4 and reacted for 1.5h at 37 ℃ after formulation was complete.
TABLE 4 Table 4
Component (A) Dosage of Final concentration
Heat denatured RNA 140μL 0.5μg/μL
10x Capping buffer 20μL 0.5U/μL
Vaccinia capping enzyme (10U/. Mu.L) 10μL 2.5U/μL
MRNA Cap 2' -O-methyltransferase (50U/. Mu.L) 10μL 0.5mM
GTP(10mM) 10μL 0.2mM
SAM(4mM) 10μL 500ng/μL
UsingThe reaction product was purified by DNA Clean Beads (DNA magnetic Beads) to obtain TCR mRNA after capping. After BspQI cleavage, electrophoresis was performed to verify the results, and the results are shown in FIG. 4. In the figure, samples ZZ1, ZZ2 and ZZ3 are the electrophoresis results of the digested products of mRNA (designated as ZZ1 mRNA, ZZ2 mRNA and ZZ3 mRNA, respectively) obtained by the above-mentioned treatments of the nucleic acid expression vectors I, II and III, respectively.
Example 3
This example is used to illustrate the results of the activation verification of TCRs provided by the present invention.
1. Experimental materials
Preparation of experimental cells:
in order to meet the functional verification requirement of HLA-A 11:01 restricted TCR sequences, transformation is performed on the basis of human lymphoma blast cells (K562), and stable transgenic cell lines capable of expressing different HLA subtypes are constructed. Because of the lack of expression of HLA class I and class II molecules on the surface of K562 cells, single HLA-expressing cell lines can be constructed artificially and used as target cells to verify HLA-restricted killing. The specific construction method is as follows:
HLA over-expression lentiviral packaging:
(1) 293FT cells with good growth state are taken and inoculated into T175 culture flasks, 20mL of Opti-MEM complete medium (Thermo FISHER SCIENTIFIC) is added into each flask, the inoculum size is about 1.2X10- 7 cells/flask, the cells are cultured overnight at 37 ℃ until the cell confluency reaches 50-60%, the reagents prepared according to the formula of Table 5 (the preparation amount of the T175 culture flask is the amount of the T175 culture flask) are added into the mixture for transfection, and the mixture is placed into a 37 ℃ incubator for continuous culture after uniform mixing.
TABLE 5
* The HLA lentivirus expression plasmid map is shown in FIG. 5.
(2) Culture supernatants were collected 48h after transfection and stored at 4 ℃. Then 20mL of fresh Opti-MEM complete medium (Thermo FISHER SCIENTIFIC) was added to each flask, and the culture was continued at 37 ℃.
(3) Culture for 72 hours, then collect the culture medium supernatant, and with step (2) collected 48h supernatant, and at 4 degrees C, 4500rpm centrifugal 5 minutes, remove the precipitation, and the supernatant obtained with 0.22 μm vacuum filter flask filtration, filtrate added to its volume 1/5 PEG8000 concentration reagent, mixing, 4 degrees C overnight concentration sedimentation.
(4) After the concentration and sedimentation are finished, the mixture is centrifuged at 4500rpm for 50min at 4 ℃, the sediment is collected and resuspended in 200. Mu.L of precooled D-PBS, and after the mixture is mixed, 50. Mu.L/tube is packed in a 1.5mL centrifuge tube for standby at-80 ℃.
Lentiviruses infect cells of interest and obtain positive monoclonal:
(1) The cultured K562 wild-type cells are prepared into a cell suspension of 3X 10 5 cells/mL, inoculated into a 12-well plate according to the dosage of 1mL per well, added with 5 mu L of the polyglutamine infection promoting reagent and 50 mu L of the slow virus, uniformly mixed, cultured at 37 ℃ and passaged.
(2) After two generations, cell flow is adopted to detect HLA expression condition, and wild K562 cells are used as negative control. HLA positive rate and expression quantity are detected through a flow, and cells are subjected to flow sorting monoclonal, and cells with 5% of the HLA expression intensity are selected and placed in at least one 96-well plate for amplification culture.
(3) The HLA expression level of the monoclonal cells is detected again by using the wild type K562 cells as a negative control in a flow mode, compared with the wild type, the HLA expression level is obviously increased, the monoclonal cells with the highest expression level are selected as target cells for functional verification of HLA-A11:01 restriction type TCR sequences for subsequent experiments (the flow detection result is shown in figure 6, the HLA positive rate of the K562-HLA-A11:01 OE cells is 98.68%).
2. Experimental method
The activation state of the TCR pathway was verified by detecting Luciferase fluorescence values using genetically engineered NFAT-Luc Jurkat cells as follows:
(1) Obtaining NFAT-Luc Jurkat cells expressing TCR:
NFAT-Luc Jurkat cells were cultured to a density of 2×10 7/mL or more, cells were collected, washed 1-fold with DPBS (cytova), resuspended in R-solution (Thermo FISHER SCIENTIFIC) to prepare a2×10 7/mL cell suspension, which was added to a 1.5mL EP tube at 100 μl/tube, and 5 μg CD8 mRNA (gold srey), 5 μg ZZ1 TCR mRNA, and 5 μg ZZ2 mRNA, respectively, were added to EP tubes where CD8 mRNA or TCR mRNA was to be electrotransferred, respectively, and labeled. 3mL of electrotransport E2 solution (Thermo FISHER SCIENTIFIC) was added to the electrotransport cup, the electrotransport cup was placed in the electrotransport apparatus (Thermo FISHER SCIENTIFIC) cup tank, the cell mixture was aspirated with 100. Mu.L of the electrotransport tip under conditions of 1400V,20ms,2pulse, and the added mRNA was introduced into NFAT-Luc Jurkat cells to obtain Jurkat cells expressing CD8 or TCR.
The CD8 or TCR expressing Jurkat cells described above were stained with HLA-A 11:01CMV tetramer (MBL) 24h after electrotransformation and the staining results are shown in FIG. 7. It can be seen from the figure that the electrotransformation successfully obtained cells capable of expressing the corresponding transferred mRNA, and that specific T cell populations expressing both TCR mrnas obtained in example 2 could be detected by HLA-A 11:01cmv tetramerization.
(2) TCR activation validation:
NFAT-Luc Jurkat cells expressing ZZ1 TCR and ZZ2 TCR were incubated with HLA-overexpressed K562 cells prepared as described previously at a 20:1 quantitative ratio for 4h at 37 ℃. After the incubation was completed, 100. Mu.L of Bio-Lite detection reagent (Norflu) equilibrated to room temperature was added to each well after one wash of DPBS (Cytiva), and after 2-5min of standing in the dark, detection was performed with an enzyme-labeled instrument, and the results are shown in FIGS. 8A and 8B. As can be seen from the figure, only HLA-A 11:01K562 cells loaded with CMV pp65 epitope peptide activated Jurkat Luc fluorescence.
Example 4
The present example is presented to demonstrate the killing effect verification of TCR-T cells provided by the present invention.
1. Experimental materials
2. Experimental method
Peripheral blood was obtained from healthy donors, PBMCs from the donors were isolated by Ficoll density gradient centrifugation and resuspended in XVIVO medium. T cells were isolated by magnetic bead purification and activated by CD3/CD28 magnetic beads and resuspended in XVIVO medium containing 2.5% human autologous serum and 30IU/mL IL-2 for 3 days. Cells were collected, DPBS was washed 1 time and resuspended in R-solution to prepare a 2X 10 7/mL cell suspension, which was added to a 1.5mL EP tube at 100. Mu.L/serving, and 5. Mu.g ZZ1 TCR mRNA and ZZ2 TCR mRNA, respectively. 3mL of E2 solution is added into an electrorotor, the electrorotor is placed into a electrorotor cup groove, 100 mu L of a transfer gun head is used for sucking cell mixed solution, electrotransformation conditions are 1400V,10ms and 3pulse, TCR mRNA is introduced into activated T cells, and T cells expressing TCR are obtained.
T cells expressing TCR as described above were stained with HLA-A 11:01CMV tetramer (MBL) 24h after electrotransformation. The results are shown in detail in FIG. 9.
Culturing K562 cells to a cell density of more than 1×10 7/mL, collecting the cells, washing the cells with 1640 culture medium for 1 time and re-suspending the cells to prepare a cell suspension of 2×10 6/mL, sucking 200 mu L/hole to 48-hole cell culture plates of the cell suspension, adding 60 mu L/hole of 200 mu M polypeptide (SEQ ID NO: 1) and then adding 1640 culture medium to fill up to 400 mu L/hole, and standing at 37 ℃ for overnight incubation.
K562 cells were incubated at 37℃for 20 min with 1. Mu.L EuTDA dye at 8X 10 5/mL, centrifuged, and the cells were washed 3 times with 1mL of 1 XPBS. After the last wash, the cells were resuspended in T cell medium.
TCR-expressing T cells (TCR-T cells containing the ZZ1 TCR and ZZ2 TCR obtained in example 2, respectively, and flow-validated to confirm successful transfer of TCR mRNA into activated T cells) were incubated with the above K562 cells at a number ratio of 20:1, 10:1, 5:1, 2.5:1, 1.25:1, respectively, for 4h at 37 ℃. After incubation, 500g was centrifuged at room temperature for 5 minutes. mu.L of the supernatant was pipetted into a flat bottom 96-well plate of EuTDA Cytotoxicity Reagents kit, 200. Mu.L of Eu solution was added to each well and incubated at room temperature with shaking at 250rpm for 10 minutes. The fluorescence values at the excitation light 330/80 and the emission light 620/10 wavelength were recorded by a microplate reader within 5 hours, and the window values and the killing efficiency were calculated from each set of fluorescence values, and the calculation formula was as follows, and the results are shown in FIG. 10 ((A) is ZZ1 TCR-T) and (B) is ZZ2 TCR-T).
Example 5
This example is used to demonstrate the results of T cell peptide sensitivity evaluation of TCRs provided by the present invention.
1. Experimental materials
Name of the name Manufacturer' s Goods number
D-PBS Cytiva SH30028.02
Human IFN-γPrecoated ELISA Kit Shenzhen Daida bioengineering Co., ltd 1110003
RPMI-1640 Thermo Fisher Scientific R5886
Fetal bovine serum Thermo Fisher Scientific SV30087.02
Green streptomycin Thermo Fisher Scientific 15140-122
X-VIVO 15 Lonza 04-418Q
2. Experimental method
T cells expressing ZZ1 TCR and ZZ2 TCR were obtained by the method of example 3. The two TCR-T cells obtained were then incubated with K562 loaded with 10 -5 M to 10 -12 M CMV epitope peptide in a 1:1 quantitative ratio for 18-24h, respectively. After the incubation, each group of cells and supernatant were collected. EC50 was estimated by plotting a fitted curve using the flow-test cell cd3+4-1bb+/cd3+ ratio (%). The concentration of IFN-gamma in the supernatants of each group of cells was measured by ELISA and a fitted curve was drawn to estimate the EC50.
K562 cells were collected, counted using a cytometer, and viable cell density and cell viability were recorded. Cells were resuspended after 1 pass using RPMI 1640 (Thermo) medium. The 24-well plates were seeded at an inoculum size K562 per well of 5X 10 5 cells, for a total of 9 groups. Different concentrations of CMV epitope peptide were added to the different groups such that the final peptide concentration was 10-12M、10- 11M、10-10M、10-9M、10-8M、10-7M、10-6M、10-5M, and the loading time was 4 hours. The TCR-T cells after the transformation were collected, counted using a cytometer, and viable cell density and cell viability were recorded. The tetramer assay was performed using X-VIVO 15 with 10% FBS (Cytiva) to resuspend cells and 2X 10 5 cells.
Epitope peptide-loaded K562 was collected and cell density was adjusted to 1X 10 6 cells/mL using XVIVO containing 10% FBS. After adjustment, 100. Mu.L of the cell suspension was added to a 96U-well plate, 3 multiplex wells per group. The TCR-T cell density was adjusted to 1X 10 6 cells/mL using XVIVO containing 10% FBS, 100. Mu.L of the cell suspension was added to a 96U-type well plate which had been seeded with K562 target cell suspension, and mixed well so that the effector cell to target cell number ratio was 1:1. After incubation of TCR-T with K562 overnight (about 18-24 hours) at 37 ℃, 96-well plate samples were centrifuged and supernatants were assayed for ELISA-IFN-gamma (Dacromet).
The ELISA standard lyophilized powder was dissolved according to the label specification, allowed to stand for 5-10 minutes, and then diluted with 1 Xdiluent to 500pg/mL, 250pg/mL, 125pg/mL, 62.5pg/mL, 31.3pg/mL, respectively.
After 10 and 100-fold dilution of the collected cell supernatants with the dilution solution, diluted samples were added to a 96-well ELISA plate at 100. Mu.L per well. Adding diluted antibody into the standard substance and the sample hole according to 50 mu L/hole, uniformly mixing, and covering a sealing plate film. Incubate for 2 hours at 37 ℃. After the incubation, the liquid in the wells was discarded, 1 Xwashing buffer was added at 300. Mu.L/well, and after 1 minute of residence, the liquid in the wells was discarded, and this step was repeated 4 times. Diluted avidin was added to the wells of the samples at 100. Mu.L/well, the plate membrane was covered and incubated at 37℃for 30 minutes. After the incubation, the well plate was washed again, TMB was added at 100. Mu.L/well and incubated at 37℃for 5-30 minutes in the dark. After the completion of the color development, 100. Mu.L/well of a stop solution was added. Within 10 minutes after termination, plates were read simultaneously with detection wavelength 450nm and correction wavelength 630 nm. IFN-y concentrations were calculated for each group of cell supernatants based on standard curves, the results were counted using GRAPHPAD PRISM and fitted curves were drawn, and the experimental results are detailed in FIGS. 11A-11B. As can be seen from the figure, both TCR-T cells expressing the TCR mRNA obtained in example 2 recognize HLA-A 11:01K652 cells loaded with different concentrations of CMV pp65 antigen peptide and release cytokines such as IFN-gamma, indicating that both TCR-T cells specifically recognize and kill cells expressing CMV pp 65. The EC 50 of ZZ1 TCR-T cells was estimated to be about 10 -5 M by fitting the curve. Although the ZZ2 TCR-T cells did not reach IFN-gamma secretion peak, EC 50 could not be calculated, but experimental results showed that they also had better ability to recognize and kill HLA-A 11:01K652 cells loaded with CMV pp65 antigen peptide.
Example 6
This example is presented to illustrate the results of motif evaluation of TCRs provided by the present invention.
1. Experimental materials
2. Experimental method
The ALA-SCAN method is adopted to identify specific amino acid sites closely related to functions, stability and conformation of the TCR provided by the invention, and the constructed alanine scanning peptide library is shown in figure 12 (the specific sequence of the epitope peptide is shown in table 6).
TABLE 6
Epitope peptide numbering ID Sequence(s)
1 SEQ ID NO:61 AAVQGQNLK
2 SEQ ID NO:62 ATAQGQNLK
3 SEQ ID NO:63 ATVAGQNLK
4 SEQ ID NO:64 ATVQAQNLK
5 SEQ ID NO:65 ATVQGANLK
6 SEQ ID NO:66 ATVQGQALK
7 SEQ ID NO:67 ATVQGQNAK
8 SEQ ID NO:68 ATVQGQNLA
T cells expressing ZZ1 TCR and ZZ2 TCR were obtained by the method of example 4.
K562 cells were cultured until the cell density reached above 1X 10 7/mL, the cells were collected, 1640 medium was washed 1 time and resuspended to obtain a cell suspension of 2X 10 6/mL, 200. Mu.L/well of this cell suspension was aspirated and added to a 48 well cell culture plate, while 60. Mu.L of epitope peptide (SEQ ID NO: 58-65) was added to each well, 1640 medium was made up to 400. Mu.L/well, and incubated overnight at 37 ℃.
Two TCR expressing T cells were incubated with the K562 cells described above at a 1:2 quantitative ratio at 37℃for 24h, respectively, and the results are shown in FIGS. 13-14. From the figure, it can be seen that the motif recognized by the electrotransport ZZ2 TCR is-TVQGQNLK, and the motif recognized by the ZZ1 TCR is-QGQ-K. The results indicate that the motif of ZZ2 recognition is more conserved.
Comparative example 1
Using the method of example 3, NFAT-Luc Jurkat was electrotransformed into ZZ3 TCR mRNA obtained in example 2 to obtain Jurkat cells expressing ZZ3 TCR, the flow test results of which are shown in FIG. 15. From the experimental results, the ZZ3 Jurkat cells were devoid of CMV-A11:01 tetramer positive population.
The ZZ3 TCR sequence (SEQ ID NO: 54) comprises an alpha chain variable region with an amino acid sequence shown as SEQ ID NO:24, a beta chain variable region with an amino acid sequence shown as SEQ ID NO:25, and an alpha chain constant region and a beta chain constant region with amino acid sequences shown as SEQ ID NO:26-27, respectively. Wherein, the alpha chain variable region comprises CDR1 alpha, CDR2 alpha and CDR3 alpha with the amino acid sequences shown in SEQ ID NO:18-20 respectively (the coding genes thereof are shown in SEQ ID NO:44-46 respectively), and the beta chain variable region comprises CDR1 beta, CDR2 beta and CDR3 beta with the amino acid sequences shown in SEQ ID NO:21-23 respectively (the coding genes thereof are shown in SEQ ID NO:47-49 respectively).
The results of the NFAT-Luc reporting system experiments are shown in fig. 16, which shows that the control group has fluorescence values in the range of 12 to 14, and the ZZ3 Jurkat has fluorescence value of 18, which is close to the control group, indicating that the TCR cannot be activated by K562-a 11:01-pep.
The preferred embodiments of the present invention have been described in detail above, but the present invention is not limited thereto. The technical solution of the invention can be modified in various ways within the scope of the technical idea of the invention, including that the technical features are combined in any other suitable way, and these simple modifications and combinations should also be regarded as the disclosure of the invention, which is within the scope of the protection of the invention.

Claims (11)

1. A T cell antigen receptor, wherein the T cell antigen receptor specifically recognizes and binds to a human cytomegalovirus binding epitope comprising the amino acid sequence shown in SEQ ID No. 1, said T cell antigen receptor comprising at least one alpha chain variable region comprising a complementarity determining region of an alpha chain and at least one beta chain variable region comprising a complementarity determining region of a beta chain;
Wherein the amino acid sequences of complementarity determining regions 1-3 of the alpha chain variable region are shown in SEQ ID NOS.2-4, respectively, and the amino acid sequences of complementarity determining regions 1-3 of the beta chain variable region are shown in SEQ ID NOS.5-7, respectively, or
The amino acid sequences of the complementarity determining regions 1-3 of the alpha-chain variable region are shown in SEQ ID NOS 10-12, respectively, and the amino acid sequences of the complementarity determining regions 1-3 of the beta-chain variable region are shown in SEQ ID NOS 13-15, respectively.
2. The T cell antigen receptor of claim 1, wherein the alpha chain variable region comprises the amino acid sequence shown in SEQ ID No. 8 and the beta chain variable region comprises the amino acid sequence shown in SEQ ID No. 9;
or the alpha chain variable region comprises the amino acid sequence shown in SEQ ID NO. 16 and the beta chain variable region comprises the amino acid sequence shown in SEQ ID NO. 17.
3. The T cell antigen receptor according to claim 1 or 2, wherein in the T cell antigen receptor, the α chain variable region is directly linked or indirectly linked to the β chain variable region.
4. A T cell antigen receptor according to claim 3, wherein in the T cell antigen receptor, the α chain variable region is indirectly linked to the β chain variable region.
5. The T cell antigen receptor of claim 4 wherein the alpha chain variable region is indirectly linked to the beta chain variable region via a furin SGSG p2A sequence.
6. A nucleic acid molecule encoding the T cell antigen receptor of any one of claims 1-5.
7. A nucleic acid expression vector comprising a coding gene and a vector sequence, wherein the coding gene is provided by the nucleic acid molecule of claim 6.
8. A vector cell comprising the T cell antigen receptor of any one of claims 1-5, and/or comprising the nucleic acid molecule of claim 6, and/or comprising the nucleic acid expression vector of claim 7.
9. Use of a T cell antigen receptor according to any one of claims 1 to 5, and/or a nucleic acid molecule according to claim 6, and/or a nucleic acid expression vector according to claim 7, and/or a vector cell according to claim 8 for the preparation of a medicament for the prophylaxis and/or treatment of a disease caused by human cytomegalovirus infection.
10. Use of a T cell antigen receptor according to any one of claims 1 to 5, and/or a nucleic acid molecule according to claim 6, and/or a nucleic acid expression vector according to claim 7, and/or a vector cell according to claim 8 for the manufacture of a medicament for the prevention and/or treatment of a disease caused by infection with human cytomegalovirus using TCR-T therapy.
11. A pharmaceutical composition for preventing and/or treating a disease caused by human cytomegalovirus infection, comprising the T cell antigen receptor of any one of claims 1 to 5, and/or the nucleic acid molecule of claim 6, and/or the nucleic acid expression vector of claim 7, and/or the vector cell of claim 8.
CN202410171062.2A 2024-02-06 2024-02-06 T cell antigen receptor and its application Active CN118221830B (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CN202410171062.2A CN118221830B (en) 2024-02-06 2024-02-06 T cell antigen receptor and its application

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
CN202410171062.2A CN118221830B (en) 2024-02-06 2024-02-06 T cell antigen receptor and its application

Publications (2)

Publication Number Publication Date
CN118221830A CN118221830A (en) 2024-06-21
CN118221830B true CN118221830B (en) 2025-02-18

Family

ID=91510307

Family Applications (1)

Application Number Title Priority Date Filing Date
CN202410171062.2A Active CN118221830B (en) 2024-02-06 2024-02-06 T cell antigen receptor and its application

Country Status (1)

Country Link
CN (1) CN118221830B (en)

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN113880937A (en) * 2020-07-01 2022-01-04 华夏英泰(北京)生物技术有限公司 T cell antigen receptor, its multimeric complex and its preparation method and application

Family Cites Families (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2022197970A2 (en) * 2021-03-19 2022-09-22 Cue Biopharma, Inc. T-cell modulatory polypeptides and methods of use thereof

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN113880937A (en) * 2020-07-01 2022-01-04 华夏英泰(北京)生物技术有限公司 T cell antigen receptor, its multimeric complex and its preparation method and application

Also Published As

Publication number Publication date
CN118221830A (en) 2024-06-21

Similar Documents

Publication Publication Date Title
CN109306005B (en) An Epstein-Barr virus-specific T cell antigen receptor and its application
JP2021138721A (en) HIV preimmunization and immunotherapy
CN104910278B (en) A kind of slow virus with high-efficiency transfection ability and biological activity for being used to prepare CART cells
WO2018223600A1 (en) Octs-car dual targeting chimeric antigen receptor, encoding gene, recombinant expression vector and construction and use thereof
CN110734931A (en) humanized scFv chimeric antigen receptor T cells targeting CD19, and preparation method and application thereof
CN105950664B (en) A kind of replication defective recombinant slow virus CAR-T transgene carrier targeting CD123 and its construction method and application
CN111690050B (en) TCR recognizing EBV-LMP2 antigen and corresponding nucleic acid molecule, vector, cell and drug
CN105820255B (en) Anti-CD 33 Chimeric antigen receptor, encoding gene, recombinant expression carrier and its construction method and application
CN109111525B (en) HLA-G chimeric antigen receptor, coding sequence, expression vector and application
EP4148066A1 (en) T cell antigen receptor, multimeric complex thereof, and preparation method therefor and use thereof
CN113583139A (en) Chimeric receptor and application thereof
JP2022512538A (en) Anti-LMP2 TCR-T cell therapy for the treatment of EBV-related cancers
CN105950663B (en) A kind of replication defective recombinant slow virus CAR-T transgene carrier targeting CD30 and its construction method and application
WO2023217143A1 (en) Use of antigen short peptide in screening drug for treating hpv-related diseases and tcr screened by same
CN112940108A (en) T cell receptor for recognizing EBV antigen and application of T cell receptor
CN118221830B (en) T cell antigen receptor and its application
WO2023217145A1 (en) Use of antigen short peptide in screening of drug for treating hpv-related disease, and tcr screened by antigen short peptide
CN112940109B (en) T cell receptor for recognizing EBV antigen and application thereof
CN112175092B (en) Dual-target chimeric antigen receptor simultaneously targeting LMP1 and GP350 and application thereof
CN115975924A (en) Preparation method and application of CTL cell
US11718827B2 (en) LRFFT2 cell
CN114249811A (en) A T cell receptor that specifically recognizes cancer/testis antigen HCA587/MAGEC2 and its application
CN116688132B (en) Use of MYO7A gene and/or protein inhibitors in the preparation of drugs
CN117624340B (en) T Cell Receptor (TCR) recognizing human Hepatitis B Virus (HBV) antigen and use thereof
WO2024131750A1 (en) T-cell antigen receptor, preparation method therefor, and use thereof

Legal Events

Date Code Title Description
PB01 Publication
PB01 Publication
SE01 Entry into force of request for substantive examination
SE01 Entry into force of request for substantive examination
GR01 Patent grant
GR01 Patent grant