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CN117802151B - Application of rice root-knot nematode disease gene OsThil in aspect of regulating and controlling resistance of rice to root-knot nematodes - Google Patents

Application of rice root-knot nematode disease gene OsThil in aspect of regulating and controlling resistance of rice to root-knot nematodes Download PDF

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CN117802151B
CN117802151B CN202410018969.5A CN202410018969A CN117802151B CN 117802151 B CN117802151 B CN 117802151B CN 202410018969 A CN202410018969 A CN 202410018969A CN 117802151 B CN117802151 B CN 117802151B
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黄文坤
于敬文
于清
赵津田
彭焕
孔令安
刘世名
康厚祥
刘万学
彭德良
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Abstract

The invention discloses an application of a rice root-knot nematode disease gene OsThil in regulating and controlling the resistance of rice to root-knot nematodes, and belongs to the technical field of biology. The invention utilizes CRISPR/Cas9 gene editing technology and gene over-expression technology, through agrobacterium-mediated mutant system, site-directed mutation and over-expression of infectious disease genes OsThil are respectively carried out in rice, and rice explants are transformed to obtain rice mutant plants with OsThil gene function deletion and OsThil gene expression increase respectively, wherein the OsThil gene function deletion mutant can obviously enhance the resistance of the rice to root-knot nematodes. The OsThil gene disclosed by the invention is utilized to construct the gene deletion mutant, which is beneficial to improving the capability of resisting pathogen infection of crop varieties and has important significance for expanding the planting range of crops and improving the crop yield.

Description

水稻根结线虫感病基因OsThil在调控水稻对根结线虫的抗性 方面的应用Application of rice root-knot nematode susceptibility gene OsThil in regulating rice resistance to root-knot nematodes

技术领域Technical Field

本发明涉及生物技术领域,特别是涉及水稻根结线虫感病基因OsThil在调控水稻对根结线虫的抗性方面的应用。The invention relates to the field of biotechnology, and in particular to application of a rice root-knot nematode susceptibility gene OsThil in regulating the resistance of rice to the root-knot nematode.

背景技术Background technique

水稻(Oryza sativa L.)是世界人口的主要粮食作物之一,水稻根结线虫病是目前在水稻上发生危害最为严重的线虫病害,每年由水稻根结线虫病造成的水稻产量损失高达20%~80%。生产实践表明,挖掘水稻对水稻根结线虫感病基因资源,利用基因编辑技术破坏感病水稻品种中的感病基因,进而培育抗病水稻品种是防治水稻根结线虫病有效、经济、环保和持久的策略。Rice (Oryza sativa L.) is one of the main food crops of the world's population. Rice root-knot nematode disease is currently the most serious nematode disease on rice, and the rice yield loss caused by rice root-knot nematode disease is as high as 20% to 80% each year. Production practice shows that exploring the genetic resources of rice susceptible to rice root-knot nematodes, using gene editing technology to destroy the susceptible genes in susceptible rice varieties, and then cultivating disease-resistant rice varieties is an effective, economical, environmentally friendly and lasting strategy for preventing and controlling rice root-knot nematodes.

水稻根结线虫感病基因是由数量性状控制的,目前在水稻中对根结线虫感病基因的定位较少。在水稻仅有少数的抗水稻根结线虫数量性状基因座被发现,水稻根结线虫抗性基因的克隆,促进了水稻抗水稻根结线虫分子改良的发展,但已定位或已克隆的水稻抗性基因抗谱不广,水稻根结线虫可以克服水稻抗性基因进而侵染水稻,因此破坏水稻中对根结线虫感病基因成为近些年研究的热点,为培育水稻抗根结线虫遗传育种提供一种新的解决方案。Rice root-knot nematode susceptibility genes are controlled by quantitative traits, and currently few root-knot nematode susceptibility genes have been located in rice. Only a few quantitative trait loci for resistance to rice root-knot nematodes have been discovered in rice. The cloning of rice root-knot nematode resistance genes has promoted the development of molecular improvement of rice resistance to rice root-knot nematodes, but the resistance spectrum of rice resistance genes that have been located or cloned is not broad. Rice root-knot nematodes can overcome rice resistance genes and then infect rice. Therefore, destroying rice root-knot nematode susceptibility genes has become a hot topic in recent years, providing a new solution for cultivating rice root-knot nematode resistance genetic breeding.

全基因组关联分析是利用分子遗传标记结合表型性状进行全基因组水平上基因型和表型的相关性统计学分析,以此来挖掘和定位影响复杂性状的基因和变异。随着高通量测序技术的迅猛发展,使得水稻基因组中数以万计的单核苷酸多态性作为分子遗传标记成为了可能,由此极大地推动了全基因组关联分析在水稻感病基因定位和克隆上的应用。Genome-wide association analysis is a statistical analysis of the correlation between genotype and phenotype at the genome-wide level using molecular genetic markers combined with phenotypic traits, in order to discover and locate genes and variants that affect complex traits. With the rapid development of high-throughput sequencing technology, it has become possible to use tens of thousands of single nucleotide polymorphisms in the rice genome as molecular genetic markers, which has greatly promoted the application of genome-wide association analysis in the location and cloning of rice disease susceptibility genes.

近期,CRISPR/Cas9基因编辑技术已经广泛应用到水稻感病基因,实现了广谱抗病性水稻品种的培育。如Xu等人利用CRISPR/Cas9技术精准编辑水稻品种日本晴的感病基因OsRNG1和OsRNG3的3’UTR区域获得的4个突变株系对稻瘟病具有显著的抗性,且突变体株系的其他农艺性状与亲本保持一致。然而,目前关于突变感病基因从而提高水稻抗根结线虫病的方法还鲜有报道。Recently, CRISPR/Cas9 gene editing technology has been widely applied to rice disease-susceptibility genes, enabling the breeding of broad-spectrum disease-resistant rice varieties. For example, Xu et al. used CRISPR/Cas9 technology to precisely edit the 3’UTR region of the disease-susceptibility genes OsRNG1 and OsRNG3 of the rice variety Nipponbare, and obtained four mutant strains with significant resistance to rice blast, and the other agronomic traits of the mutant strains were consistent with those of the parents. However, there are few reports on methods for mutating disease-susceptibility genes to improve rice resistance to root-knot nematodes.

发明内容Summary of the invention

本发明的目的是提供水稻根结线虫感病基因OsThil在调控水稻对根结线虫的抗性方面的应用,以解决上述现有技术存在的问题,缺失水稻根结线虫感病基因OsThil可以显著提高水稻对根结线虫的抗性。The present invention aims to provide an application of a rice root-knot nematode susceptibility gene OsThil in regulating the resistance of rice to root-knot nematodes, so as to solve the problems existing in the above-mentioned prior art. The deletion of the rice root-knot nematode susceptibility gene OsThil can significantly improve the resistance of rice to root-knot nematodes.

为实现上述目的,本发明提供了如下方案:To achieve the above object, the present invention provides the following solutions:

本发明提供水稻根结线虫感病基因OsThil在以下(1)或(2)中的应用:The present invention provides the use of the rice root-knot nematode susceptibility gene OsThil in the following (1) or (2):

(1)在调控水稻对根结线虫的抗性方面的应用;(1) Application in regulating rice resistance to root-knot nematodes;

(2)在培育对水稻根结线虫易感性或者抗性增强的转基因水稻中的应用;(2) Application in breeding transgenic rice with enhanced susceptibility or resistance to rice root-knot nematodes;

其中,所述OsThil的核苷酸序列如SEQ ID NO.1所示。Wherein, the nucleotide sequence of OsThil is shown as SEQ ID NO.1.

本发明还提供所述的水稻根结线虫感病基因OsThil表达的蛋白在以下(1)或(2)中的应用:The present invention also provides the use of the protein expressed by the rice root-knot nematode susceptibility gene OsThil in the following (1) or (2):

(1)在调控水稻对根结线虫的抗性方面的应用;(1) Application in regulating rice resistance to root-knot nematodes;

(2)在培育对水稻根结线虫易感性或者抗性增强的转基因水稻中的应用。(2) Application in breeding transgenic rice with enhanced susceptibility or resistance to rice root-knot nematodes.

本发明还提供包含所述的水稻根结线虫感病基因OsThil的重组载体在以下(1)或(2)中的应用:The present invention also provides the use of a recombinant vector comprising the rice root-knot nematode susceptibility gene OsThil in the following (1) or (2):

(1)在调控水稻对根结线虫的抗性方面的应用;(1) Application in regulating rice resistance to root-knot nematodes;

(2)在培育对水稻根结线虫易感性或者抗性增强的转基因水稻中的应用。(2) Application in breeding transgenic rice with enhanced susceptibility or resistance to rice root-knot nematodes.

本发明还提供包含所述的重组载体的宿主细胞在以下(1)或(2)中的应用:The present invention also provides the use of a host cell comprising the recombinant vector in the following (1) or (2):

(1)在调控水稻对根结线虫的抗性方面的应用;(1) Application in regulating rice resistance to root-knot nematodes;

(2)在培育对水稻根结线虫易感性或者抗性增强的转基因水稻中的应用。(2) Application in breeding transgenic rice with enhanced susceptibility or resistance to rice root-knot nematodes.

优选的是,通过降低、干扰所述水稻根结线虫感病基因OsThil或其片段的表达,或者敲除所述水稻根结线虫感病基因OsThil或其片段,增强水稻对根结线虫的抗性;过表达所述水稻根结线虫感病基因OsThil或其片段,增强水稻对根结线虫的易感性。上述敲除水稻根结线虫感病基因OsThil的片段,包括但不限于敲除SEQ ID NO.1所示序列的23-27位(CTTCG)或24-25位(TT)后的序列。Preferably, the resistance of rice to root-knot nematodes is enhanced by reducing or interfering with the expression of the rice root-knot nematode susceptibility gene OsThil or a fragment thereof, or knocking out the rice root-knot nematode susceptibility gene OsThil or a fragment thereof; overexpressing the rice root-knot nematode susceptibility gene OsThil or a fragment thereof enhances the susceptibility of rice to root-knot nematodes. The above-mentioned knockout fragment of the rice root-knot nematode susceptibility gene OsThil includes but is not limited to the sequence after knocking out positions 23-27 (CTTCG) or positions 24-25 (TT) of the sequence shown in SEQ ID NO.1.

本发明还提供一种增强水稻对根结线虫易感性的转基因水稻的培育方法,包括在水稻中过表达水稻根结线虫感病基因OsThil,培育获取增强水稻对根结线虫易感性的转基因水稻;所述水稻根结线虫感病基因OsThil的核苷酸序列如SEQ ID NO.1所示。The present invention also provides a method for cultivating transgenic rice with enhanced susceptibility to root-knot nematodes, comprising overexpressing a rice root-knot nematode susceptibility gene OsThil in rice to cultivate transgenic rice with enhanced susceptibility to root-knot nematodes; the nucleotide sequence of the rice root-knot nematode susceptibility gene OsThil is shown in SEQ ID NO.1.

本发明还提供一种增强水稻对根结线虫抗性的转基因水稻的培育方法,包括在水稻中敲除水稻根结线虫感病基因OsThil或其片段,培育获取增强水稻对根结线虫抗性的转基因水稻;所述水稻根结线虫感病基因OsThil的核苷酸序列如SEQ ID NO.1所示。The present invention also provides a method for cultivating transgenic rice with enhanced resistance to root-knot nematodes, comprising knocking out the rice root-knot nematode susceptibility gene OsThil or a fragment thereof in rice to cultivate transgenic rice with enhanced resistance to root-knot nematodes; the nucleotide sequence of the rice root-knot nematode susceptibility gene OsThil is shown in SEQ ID NO.1.

本发明公开了以下技术效果:The present invention discloses the following technical effects:

本发明利用CRISPR/Cas9基因编辑技术和过表达技术获得日本晴水稻OsThil基因突变体植株,经过室内接种验证了水稻中一个根结线虫感病基因OsThil基因,该基因可以介导根结线虫侵染水稻,研究结果显示:过表达OsThil基因显著增强植株对线虫的敏感性,而敲除OsThil基因可显著提高水稻对根结线虫的抗性,且不会影响水稻植株的生长表型。本发明通过CRISPR/Cas9基因编辑技术构建的转基因水稻的培育方法,可以实现对水稻抗性资源的扩充,并且可以方便、高效的应用定点编辑水稻感病基因位点提高对根结线虫的抗性,获得OsThil基因功能缺失的抗根结线虫病水稻新品系,这为水稻根结线虫的绿色防控和抗性品种分子育种提供了种质资源和创制方法。The present invention uses CRISPR/Cas9 gene editing technology and overexpression technology to obtain Nipponbare rice OsThil gene mutant plants, and verifies a root-knot nematode susceptible gene OsThil gene in rice through indoor inoculation. The gene can mediate root-knot nematode infection of rice. The research results show that overexpression of OsThil gene significantly enhances the sensitivity of plants to nematodes, while knocking out OsThil gene can significantly improve the resistance of rice to root-knot nematodes, and will not affect the growth phenotype of rice plants. The cultivation method of transgenic rice constructed by CRISPR/Cas9 gene editing technology can realize the expansion of rice resistance resources, and can conveniently and efficiently apply fixed-point editing of rice susceptible gene sites to improve resistance to root-knot nematodes, and obtain new root-knot nematode resistance rice lines with OsThil gene function loss, which provides germplasm resources and creation methods for green prevention and control of rice root-knot nematodes and molecular breeding of resistant varieties.

附图说明BRIEF DESCRIPTION OF THE DRAWINGS

为了更清楚地说明本发明实施例或现有技术中的技术方案,下面将对实施例中所需要使用的附图作简单地介绍,显而易见地,下面描述中的附图仅仅是本发明的一些实施例,对于本领域普通技术人员来讲,在不付出创造性劳动的前提下,还可以根据这些附图获得其他的附图。In order to more clearly illustrate the embodiments of the present invention or the technical solutions in the prior art, the drawings required for use in the embodiments will be briefly introduced below. Obviously, the drawings described below are only some embodiments of the present invention. For ordinary technicians in this field, other drawings can be obtained based on these drawings without paying creative work.

图1为OsThil基因结构及guide RNA(gRNA)靶标序列;Figure 1 shows the OsThil gene structure and guide RNA (gRNA) target sequence;

图2为pYLCRISPR/Cas9-Pubi-H-OsThil-CR载体T-DNA结构示意图;Figure 2 is a schematic diagram of the T-DNA structure of the pYLCRISPR/Cas9-Pubi-H-OsThil-CR vector;

图3为突变株Thil-CR的OsThil基因靶序列突变(a)及其氨基酸变化(b)比对结果;FIG3 is a comparison result of the target sequence mutation (a) and amino acid change (b) of the OsThil gene of the mutant Thil-CR;

图4为pRHV-OsThil-OE载体T-DNA结构示意图;Figure 4 is a schematic diagram of the T-DNA structure of the pRHV-OsThil-OE vector;

图5为Thil-OE突变体植株潮霉素阳性筛选结果;WT为野生型植株;Thil-OE为过表达突变体植株;Figure 5 shows the results of positive screening of Thil-OE mutant plants by hygromycin; WT is a wild-type plant; Thil-OE is an overexpression mutant plant;

图6为缺失突变株Thil-CR和过表达突变株Thil-OE与日本晴植株表型结果;a:植株高度比对结果;b:根长比对结果;Figure 6 shows the phenotypic results of the deletion mutant Thil-CR and the overexpression mutant Thil-OE and Nipponbare plants; a: plant height comparison results; b: root length comparison results;

图7为缺失突变株Thil-CR和过表达突变株Thil-OE与日本晴植株接种拟禾本科根结线虫后线虫侵染和发育统计结果,以野生型日本晴为对照;a:每个植株根结的数量统计结果;b:每个植株拟禾本科根结线虫侵染数量统计结果;c:对不同发育阶段拟禾本科根结线虫线虫占比统计结果;*表示t-test检验有显著差异(P<0.05);**表示t-test检验有极显著差异(P<0.05)。Figure 7 shows the statistical results of nematode infection and development after the deletion mutant strain Thil-CR, the overexpression mutant strain Thil-OE and the Nipponbare plants were inoculated with the root-knot nematodes of the Poaceae family, with the wild type Nipponbare as the control; a: statistical results of the number of root knots of each plant; b: statistical results of the number of root-knot nematodes infected in each plant; c: statistical results of the proportion of root-knot nematodes of the Poaceae family at different developmental stages; * indicates that the t-test test has significant differences (P<0.05); ** indicates that the t-test test has extremely significant differences (P<0.05).

具体实施方式Detailed ways

现详细说明本发明的多种示例性实施方式,该详细说明不应认为是对本发明的限制,而应理解为是对本发明的某些方面、特性和实施方案的更详细的描述。Various exemplary embodiments of the present invention will now be described in detail. This detailed description should not be considered as limiting the present invention, but should be understood as a more detailed description of certain aspects, features, and embodiments of the present invention.

应理解本发明中所述的术语仅仅是为描述特别的实施方式,并非用于限制本发明。另外,对于本发明中的数值范围,应理解为还具体公开了该范围的上限和下限之间的每个中间值。在任何陈述值或陈述范围内的中间值,以及任何其他陈述值或在所述范围内的中间值之间的每个较小的范围也包括在本发明内。这些较小范围的上限和下限可独立地包括或排除在范围内。It should be understood that the terms described in the present invention are only for describing a particular embodiment and are not intended to limit the present invention. In addition, for the numerical range in the present invention, it should be understood that each intermediate value between the upper and lower limits of the scope is also specifically disclosed. The intermediate value in any stated value or stated range, and each smaller range between any other stated value or intermediate value in the described range is also included in the present invention. The upper and lower limits of these smaller ranges can be independently included or excluded in the scope.

除非另有说明,否则本文使用的所有技术和科学术语具有本发明所述领域的常规技术人员通常理解的相同含义。虽然本发明仅描述了优选的方法和材料,但是在本发明的实施或测试中也可以使用与本文所述相似或等同的任何方法和材料。本说明书中提到的所有文献通过引用并入,用以公开和描述与所述文献相关的方法和/或材料。在与任何并入的文献冲突时,以本说明书的内容为准。Unless otherwise indicated, all technical and scientific terms used herein have the same meanings as commonly understood by those skilled in the art. Although the present invention describes only preferred methods and materials, any methods and materials similar or equivalent to those described herein may also be used in the implementation or testing of the present invention. All documents mentioned in this specification are incorporated by reference to disclose and describe methods and/or materials related to the documents. In the event of a conflict with any incorporated document, the content of this specification shall prevail.

在不背离本发明的范围或精神的情况下,可对本发明说明书的具体实施方式做多种改进和变化,这对本领域技术人员而言是显而易见的。由本发明的说明书得到的其他实施方式对技术人员而言是显而易见得的。本发明说明书和实施例仅是示例性的。It will be apparent to those skilled in the art that various modifications and variations may be made to the specific embodiments of the present invention description without departing from the scope or spirit of the present invention. Other embodiments derived from the present invention description will be apparent to those skilled in the art. The present invention description and examples are exemplary only.

关于本文中所使用的“包含”、“包括”、“具有”、“含有”等等,均为开放性的用语,即意指包含但不限于。The words “include,” “including,” “have,” “contain,” etc. used in this document are open-ended terms, meaning including but not limited to.

发明人前期通过全基因组关联结合转录组分析定位到水稻第7号染色体分子标记4.5Mbp区段内的OsThil基因与根结线虫的抗感性紧密相关。为了进一步分析该基因在水稻与根结线虫互作中的功能,本发明利用CRISPR/Cas9基因编辑技术和过表达技术获得日本晴水稻OsThil基因突变体植株,经过室内接种验证了水稻中一个根结线虫感病基因OsThil基因,该基因可以介导根结线虫侵染水稻,研究显示过表达OsThil基因,获得OsThil基因表达量增加的水稻突变体植株,该植株对根结线虫的敏感性显著增加,表明OsThil基因为水稻根结线虫感病基因,可显著增强植株对线虫的敏感性;而构建含OsThil基因sgRNA序列的CRISPR/Cas9植物表达载体,通过农杆菌介导的遗传转化体系在水稻中对OsThil基因靶标位点进行突变,获得稳定遗传的OsThil基因功能缺失的水稻植株,该植株对根结线虫的抗性显著提高。说明敲除OsThil基因可显著提高水稻对根结线虫的抗性,且不会影响水稻植株的生长表型。The inventors previously located the OsThil gene within the 4.5 Mbp segment of the molecular marker on chromosome 7 of rice through whole genome association combined with transcriptome analysis, which is closely related to the resistance to root-knot nematodes. In order to further analyze the function of the gene in the interaction between rice and root-knot nematodes, the present invention uses CRISPR/Cas9 gene editing technology and overexpression technology to obtain Nipponbare rice OsThil gene mutant plants, and verifies a root-knot nematode susceptible gene OsThil gene in rice through indoor inoculation. The gene can mediate root-knot nematode infection of rice. Studies have shown that by overexpressing the OsThil gene, a rice mutant plant with increased OsThil gene expression is obtained, and the sensitivity of the plant to root-knot nematodes is significantly increased, indicating that the OsThil gene is a rice root-knot nematode susceptible gene and can significantly enhance the sensitivity of the plant to nematodes; and a CRISPR/Cas9 plant expression vector containing the OsThil gene sgRNA sequence is constructed, and the OsThil gene target site is mutated in rice through the Agrobacterium-mediated genetic transformation system to obtain a rice plant with a stable inheritance of OsThil gene function loss, and the resistance of the plant to root-knot nematodes is significantly improved. This indicates that knocking out the OsThil gene can significantly improve rice's resistance to root-knot nematodes without affecting the growth phenotype of rice plants.

为了更详细的说明上述的技术方案,下面以具体的实施例进一步说明。In order to explain the above technical solution in more detail, a specific embodiment is further described below.

以下实施例涉及的基因序列和引物序列,如下表1所示。The gene sequences and primer sequences involved in the following examples are shown in Table 1 below.

表1基因和引物序列Table 1 Gene and primer sequences

实施例1基于CRISPR/Cas9基因编辑技术定点敲除水稻感病基因OsThilExample 1: Site-directed knockout of rice disease susceptibility gene OsThil based on CRISPR/Cas9 gene editing technology

1、gRNA靶标位点的设计1. Design of gRNA target sites

根据OsThil基因的序列如SEQ ID NO.1所示,在OsThil基因的外显子上设计靶位点gRNA,其序列如SEQ ID NO.2所示(如图1所示)。According to the sequence of the OsThil gene as shown in SEQ ID NO.1, a target site gRNA was designed on the exon of the OsThil gene, and its sequence was shown in SEQ ID NO.2 (as shown in FIG. 1 ).

2、植物表达载体pYLCRISPR/Cas9-Pubi-H-OsThil-CR的构建2. Construction of plant expression vector pYLCRISPR/Cas9-Pubi-H-OsThil-CR

采用Over lapping PCR方法:Using Overlapping PCR method:

第一轮PCR主要目的是以pYLsgRNA-OsU3为模板,将gRNA引入OsU3启动子下游和sgRNA序列的上游,反应1为利用引物对U-F/OsThil-U3T1扩增后将gRNA序列引入OsU3启动子下游(序列如SEQ ID NO.13所示);反应2为利用引物对gR-R/OsThil-gRT1扩增后将gRNA序列引入sgRNA序列的上游(序列如SEQ ID NO.14所示)。The main purpose of the first round of PCR is to introduce gRNA into the downstream of OsU3 promoter and upstream of sgRNA sequence using pYLsgRNA-OsU3 as template. Reaction 1 is to introduce gRNA sequence into the downstream of OsU3 promoter after amplification using primer pair U-F/OsThil-U3T1 (sequence as shown in SEQ ID NO.13); Reaction 2 is to introduce gRNA sequence into the upstream of sgRNA sequence after amplification using primer pair gR-R/OsThil-gRT1 (sequence as shown in SEQ ID NO.14).

扩增反应体系如下表2所示:The amplification reaction system is shown in Table 2 below:

表2第一轮扩增反应体系Table 2 First round amplification reaction system

反应程序为:95℃5min;95℃10s,58℃15s,72℃15s,25次循环;72℃10min。The reaction program was: 95°C for 5 min; 95°C for 10 s, 58°C for 15 s, 72°C for 15 s, 25 cycles; 72°C for 10 min.

随后以第一轮PCR产物(反应1和反应2的产物)为模板,利用引物对Pps/Pgs将启动子、靶点和sgRNA骨架构建成完整的表达盒,扩增后序列如SEQ ID NO.15所示。Subsequently, the first round of PCR products (products of reaction 1 and reaction 2) were used as templates, and the promoter, target site and sgRNA backbone were constructed into a complete expression cassette using primer pair Pps/Pgs. The sequence after amplification is shown in SEQ ID NO.15.

扩增反应体系如下表3所示:The amplification reaction system is shown in Table 3 below:

表3第二轮扩增反应体系Table 3 Second round amplification reaction system

反应程序为:95℃5min;95℃10s,58℃15s,72℃20s,28次循环;72℃10min。The reaction program was: 95°C for 5 min; 95°C for 10 s, 58°C for 15 s, 72°C for 20 s, 28 cycles; 72°C for 10 min.

接着将gRNA表达盒克隆到pYLCRISPR/Cas9-Pubi-H,获得重组植物表达载体pYLCRI SPR/Cas9-Pubi-H-OsThil-CR,其T-DNA结构示意图见图2。Then, the gRNA expression cassette was cloned into pYLCRISPR/Cas9-Pubi-H to obtain the recombinant plant expression vector pYLCRI SPR/Cas9-Pubi-H-OsThil-CR, and its T-DNA structure diagram is shown in Figure 2.

所述载体pYLsgRNA-OsU3和pYLCRISPR/Cas9-Pubi-H来源于中国农业科学院作物科学研究所,且已在文献《Xingliang Ma,Qunyu Zhang,Qinlong Zhu,et al.2015,ARobust CRISPR/Cas9 System for Convenient,High-Efficiency Multiplex GenomeEditing in Monocot and Dicot Plants.Molecular Plant,8(8):1274-1284》中得以公开。The vectors pYLsgRNA-OsU3 and pYLCRISPR/Cas9-Pubi-H are derived from the Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, and have been disclosed in the document "Xingliang Ma, Qunyu Zhang, Qinlong Zhu, et al. 2015, A Robust CRISPR/Cas9 System for Convenient, High-Efficiency Multiplex Genome Editing in Monocot and Dicot Plants. Molecular Plant, 8(8): 1274-1284".

3、重组载体热激法导入根癌农杆菌EHA1053. Heat shock method for the introduction of recombinant vector into Agrobacterium tumefaciens EHA105

参考EHA105感受态转化方法,将上述构建的重组植物表达载体pYLCRISPR/Cas9-Pub-H-OsThil-CR通过热激法转化进入根癌农杆菌EHA105菌株中,转化后挑取单菌落进行PCR检测,阳性克隆命名为EHA105-OsThil-CRISPR/Cas9-CR。Referring to the EHA105 competent transformation method, the recombinant plant expression vector pYLCRISPR/Cas9-Pub-H-OsThil-CR constructed above was transformed into the Agrobacterium tumefaciens EHA105 strain by heat shock method. After transformation, a single colony was picked for PCR detection, and the positive clone was named EHA105-OsThil-CRISPR/Cas9-CR.

4、农杆菌介导的水稻愈伤组织转化4. Agrobacterium-mediated rice callus transformation

农杆菌介导的水稻愈伤组织转化具体方法如下:The specific method of Agrobacterium-mediated rice callus transformation is as follows:

S1.将水稻种子经表面消毒后接种于诱导培养基,放于30℃恒温暗培养1个月左右,将诱导产生的愈伤组织接种于新的继代培养基上,1周后可作为农杆菌转化的材料;S1. After surface disinfection, rice seeds are inoculated into an induction medium and cultured in a dark place at 30°C for about 1 month. The induced callus tissue is inoculated into a new subculture medium and can be used as material for Agrobacterium transformation after 1 week.

S2.采用上述制备的重组菌体,从-80℃冰箱中取出EHA105-OsThil-CRISPR/Cas9-CR原管菌液,在含有50μg/mL利福平和50μg/mL硫酸卡那霉素的LB平板上划线培养,28℃暗培养2d后,用移液枪吸取1mL的粳稻悬浮培养基,洗下平板上的农杆菌,将其加入到含50mL悬浮液的三角瓶中,置于28℃恒温摇床摇菌1-2h,调至OD值为1.0左右,置于超净工作台上备用;S2. Using the recombinant bacteria prepared above, take out the EHA105-OsThil-CRISPR/Cas9-CR original tube bacterial liquid from the -80℃ refrigerator, streak culture on an LB plate containing 50μg/mL rifampicin and 50μg/mL kanamycin sulfate, and culture in the dark at 28℃ for 2 days. Then, use a pipette to draw 1mL of japonica rice suspension culture medium, wash off the Agrobacterium on the plate, add it to a triangular flask containing 50mL of the suspension, place it in a constant temperature shaker at 28℃ for 1-2h, adjust the OD value to about 1.0, and place it on a clean bench for use;

S3.挑选淡黄色表面干爽结构致密的愈伤组织,放于农杆菌悬浮液中浸泡30min,然后转移到固体共培养基上,25℃黑暗条件下共培养3d;S3. Select callus tissue with light yellow surface, dry and compact structure, soak it in Agrobacterium suspension for 30 min, then transfer it to solid co-culture medium and co-culture it at 25℃ in the dark for 3 days;

S4.将共培养后的愈伤组织用无菌水洗3遍,然后用无菌滤纸吸干水分转移到筛选培养基中,30℃暗培养,20d后将抗性愈伤转入新的筛选培养基进行第二次筛选;S4. Wash the co-cultured callus tissue with sterile water three times, then dry it with sterile filter paper and transfer it to the screening medium. Culture it in the dark at 30°C. After 20 days, transfer the resistant callus to a new screening medium for a second screening.

S5.将筛选出来的抗性愈伤组织转移至分化培养基,置于光照培养箱中培养,条件为:28℃,16h光照/8h黑暗,光照度约12000LX。分化1个半月左右,可获得遗传转化植株(Thil-CR)。S5. The selected resistant callus was transferred to a differentiation medium and cultured in a light incubator at 28°C, 16h light/8h dark, and a light intensity of about 12000LX. After differentiation for about one and a half months, genetically transformed plants (Thil-CR) were obtained.

上述根癌农杆菌介导的水稻成熟胚遗传转化过程中,所需要的培养基及配制成分如下表4所示。In the above-mentioned Agrobacterium tumefaciens-mediated genetic transformation of rice mature embryos, the culture medium and formulation components required are shown in Table 4 below.

表4培养基Table 4 Culture medium

实施例2基于过表达水稻感病基因OsThil重组载体构建的转基因水稻Example 2 Transgenic rice constructed based on recombinant vector overexpressing rice disease susceptibility gene OsThil

1、OsThil靶标位点的设计1. Design of OsThil target site

通过PCR扩增OsThil基因的CDS序列(SEQ ID NO.3),测序验证成功后置于-20℃冰箱备用。The CDS sequence of the OsThil gene (SEQ ID NO. 3) was amplified by PCR and after successful sequencing verification, it was placed in a -20°C refrigerator for future use.

PCR扩增引物对为:The primer pairs for PCR amplification are:

Thil30-F:5’-ATGGAGGGAAAGAGGACTACCACTT-3’;Thil30-F: 5′-ATGGAGGGAAAGAGGACTACCACTT-3′;

Thil30-R:5’-TTAGGCTTGTCCTTCCATCTTAGC-3’。Thil30-R: 5’-TTAGGCTTGTCCTTCCATCTTAGC-3’.

反应体系如下表5所示:The reaction system is shown in Table 5 below:

表5扩增反应体系Table 5 Amplification reaction system

反应程序为:98℃5min;98℃10s,55℃5s,72℃5s,35次循环;72℃10min。The reaction program was: 98°C for 5 min; 98°C for 10 s, 55°C for 5 s, 72°C for 5 s, 35 cycles; 72°C for 10 min.

2、植物表达载体pRHV-OsThil-OE的构建2. Construction of plant expression vector pRHV-OsThil-OE

将OsThil基因的CDS序列构建到pRHV载体中的CaMV 35S启动子下游和NOS终止子上游,获得重组植物表达载体pRHV-OsThil-OE,其T-DNA结构示意图见图4。上述pRHV载体来源于中国农业科学院作物科学研究所。The CDS sequence of the OsThil gene was constructed into the pRHV vector downstream of the CaMV 35S promoter and upstream of the NOS terminator to obtain the recombinant plant expression vector pRHV-OsThil-OE, the schematic diagram of its T-DNA structure is shown in Figure 4. The above pRHV vector is from the Institute of Crop Sciences, Chinese Academy of Agricultural Sciences.

3、重组载体热激法导入根癌农杆菌EHA1053. Heat shock method for the introduction of recombinant vector into Agrobacterium tumefaciens EHA105

参考EHA105感受态转化方法,将上述重组植物表达载体pRHV-OsThil-OE通过热激法转化进入根癌农杆菌EHA105菌株中,转化后挑取单菌落,采用NosR/HygR引物对进行PCR检测,阳性克隆命名为pRHV-OsThil-OE(序列如SEQ ID NO.16所示)。With reference to the EHA105 competent transformation method, the above-mentioned recombinant plant expression vector pRHV-OsThil-OE was transformed into the Agrobacterium tumefaciens EHA105 strain by heat shock method. After transformation, a single colony was picked and PCR detection was performed using the NosR/HygR primer pair. The positive clone was named pRHV-OsThil-OE (sequence as shown in SEQ ID NO.16).

用于PCR检测的反应体系如下表6所示:The reaction system used for PCR detection is shown in Table 6 below:

表6反应体系Table 6 Reaction system

反应程序为:98℃5min;98℃10s,58℃15s,72℃15s,35次循环;72℃10min。The reaction program was: 98°C for 5 min; 98°C for 10 s, 58°C for 15 s, 72°C for 15 s, 35 cycles; 72°C for 10 min.

4、农杆菌介导的水稻愈伤组织转化4. Agrobacterium-mediated rice callus transformation

S1.将水稻种子经表面消毒后接种于诱导培养基,放于30℃恒温暗培养1个月左右,将诱导产生的愈伤组织接种于新的继代培养基上,1周后可作为农杆菌转化的材料;S1. After surface disinfection, rice seeds are inoculated into an induction medium and cultured in a dark place at 30°C for about 1 month. The induced callus tissue is inoculated into a new subculture medium and can be used as material for Agrobacterium transformation after 1 week.

S2.采用上述制备的重组菌株,从-80℃冰箱中取出pRHV-OsThil-OE原管菌液,在含有50μg/mL利福平和50μg/mL硫酸卡那霉素的LB平板上划线培养,28℃暗培养2d后,用移液枪吸取1mL的粳稻悬浮培养基,洗下平板上的农杆菌,将其加入到含50mL悬浮液的三角瓶中,置于28℃恒温摇床摇菌1-2h,调至OD值为1.0左右,置于超净工作台上备用;S2. Using the recombinant strain prepared above, take out the pRHV-OsThil-OE original tube bacterial solution from the -80°C refrigerator, streak culture on an LB plate containing 50 μg/mL rifampicin and 50 μg/mL kanamycin sulfate, and culture in the dark at 28°C for 2 days. Use a pipette to draw 1 mL of japonica rice suspension culture medium, wash off the Agrobacterium on the plate, add it to a triangular flask containing 50 mL of the suspension, place it on a constant temperature shaker at 28°C for 1-2 hours, adjust the OD value to about 1.0, and place it on a clean bench for use;

S3.挑选淡黄色表面干爽结构致密的愈伤组织,放于农杆菌悬浮液中浸泡30min,然后转移到固体共培养基上,25℃黑暗条件下共培养3d;S3. Select callus with light yellow surface, dry and compact structure, soak it in Agrobacterium suspension for 30 min, then transfer it to solid co-culture medium and co-culture it at 25℃ in the dark for 3 days;

S4.将共培养后的愈伤组织用无菌水洗3遍,然后用无菌滤纸吸干水分转移到筛选培养基中,30℃暗培养,20d后将抗性愈伤转入新的筛选培养基进行第二次筛选;S4. Wash the co-cultured callus tissue with sterile water three times, then dry it with sterile filter paper and transfer it to the screening medium. Culture it in the dark at 30°C. After 20 days, transfer the resistant callus to a new screening medium for a second screening.

S5.将筛选出来的抗性愈伤组织转移至分化培养基,置于光照培养箱中培养,条件为:28℃,16h光照/8h黑暗,光照度约12000LX。分化1个半月左右,可获得遗传转化植株(Thil-OE)。S5. The selected resistant callus was transferred to a differentiation medium and cultured in a light incubator at 28°C, 16h light/8h dark, and a light intensity of about 12000LX. After differentiation for about one and a half months, genetically transformed plants (Thil-OE) were obtained.

上述用到的培养基同表2。The culture medium used above is the same as that in Table 2.

实施例3CRISPR/Cas9基因编辑OsThil基因和过表达OsThil基因水稻突变体阳性鉴定Example 3 CRISPR/Cas9 gene editing of OsThil gene and positive identification of rice mutants overexpressing OsThil gene

1、CRISPR/Cas9基因编辑OsThil基因水稻突变体阳性鉴定1. Positive identification of rice mutants expressing OsThil gene by CRISPR/Cas9 gene editing

利用CTAB法提取水稻叶片DNA,利用引物对对CRISPR/Cas9基因编辑OsThil基因水稻突变体进行PCR扩增,并对扩增片段进行测序验证(结果如图3所示,缺失序列为SEQ IDNO:1所示序列中缺失23-27位(CTTCG,序列见SEQ ID NO:12所示)或24-25位(TT)后的序列。)。The rice leaf DNA was extracted by the CTAB method, and the CRISPR/Cas9 gene-edited OsThil gene rice mutant was amplified by PCR using primer pairs, and the amplified fragment was sequenced for verification (the results are shown in Figure 3, and the deletion sequence is the sequence after the deletion of positions 23-27 (CTTCG, the sequence is shown in SEQ ID NO: 12) or 24-25 (TT) in the sequence shown in SEQ ID NO: 1.).

引物对如下:The primer pairs are as follows:

Thil CR-F:5’-GGCAGCCATCCACACCTTATGC-3’;Thil CR-F: 5′-GGCAGCCATCCACACCTTATGC-3′;

Thil CR-R:5’-CCTCGCTAGATATCAGCTAGGTAGAC-3’。Thil CR-R:5’-CCTCGCTAGATATCAGCTAGGTAGAC-3’.

扩增反应体系如下表7所示:The amplification reaction system is shown in Table 7 below:

表7反应体系Table 7 Reaction system

扩增反应程序为:98℃5min;98℃10s,58℃15s,72℃10s,35次循环;72℃10min。The amplification reaction program was: 98°C for 5 min; 98°C for 10 s, 58°C for 15 s, 72°C for 10 s, 35 cycles; 72°C for 10 min.

2、过表达OsThil基因水稻突变体阳性鉴定2. Positive identification of rice mutants overexpressing the OsThil gene

随机选取用含50mg·L-1潮霉素的1/2MS固体培养基进行阳性鉴定。结果如图5所示,结果显示,收获的种子均能在含50mg·L-1潮霉素的1/2MS固体培养基中生长,而未进行遗传转化的野生型日本晴则不能在含潮霉素的1/2MS固体培养基生长。Randomly selected 1/2MS solid medium containing 50 mg·L -1 hygromycin for positive identification. The results are shown in Figure 5, showing that the harvested seeds can grow in 1/2MS solid medium containing 50 mg·L -1 hygromycin, while the wild type Nipponbare that has not been genetically transformed cannot grow in 1/2MS solid medium containing hygromycin.

实施例3CRISPR/Cas9基因编辑OsThil基因和过表达OsThil基因水稻突变体抗性评价Example 3 CRISPR/Cas9 gene editing of OsThil gene and resistance evaluation of rice mutants overexpressing OsThil gene

室内盆栽实验培养的水稻苗的根部在播种后14天可用于拟禾本科根结线虫接种。在接种前,需提前1~2天停止浇灌水稻全营养液,目的是减少沙和吸水树脂基质中的水分,便于线虫侵染水稻根系。接种时,用蓝色枪头在靠近水稻茎秆周围沙土中插入孔洞,随后用胶头滴管吸取1mL约300头拟禾本科根结线虫二龄幼虫悬浮液,沿着孔洞贴近水稻根部缓慢滴加到沙和吸水树脂基质中。接种后2~3天停止浇灌水稻全营养液,以免影响拟禾本科根结线虫侵染水稻根系。拟禾本科根结线虫接种后14d用酸性品红染色统计线虫的侵染数量及发育情况,最后取多棵水稻的平均值,做T-test差异分析(P<0.05)。The roots of rice seedlings cultured in indoor pot experiments can be used for inoculation of root-knot nematodes of the Poaceae family 14 days after sowing. Before inoculation, it is necessary to stop watering with rice complete nutrient solution 1 to 2 days in advance, in order to reduce the moisture in the sand and absorbent resin matrix, so as to facilitate the nematode to infect the rice root system. During inoculation, a blue gun tip is used to insert holes in the sand near the rice stems, and then a rubber-tipped dropper is used to absorb 1 mL of a suspension of about 300 second-instar larvae of the Poaceae root-knot nematodes, and then slowly dripped into the sand and absorbent resin matrix along the holes close to the rice roots. Stop watering with rice complete nutrient solution 2 to 3 days after inoculation to avoid affecting the infection of the root-knot nematodes of the Poaceae family. 14 days after the inoculation of the Poaceae root-knot nematodes, the number of nematode infections and development were counted by acid fuchsin staining, and finally the average value of multiple rice plants was taken for T-test difference analysis (P<0.05).

结果如图7所示,与日本晴水稻相比,在感病品种日本晴中分别过表达OsThil基因显著增强了对拟禾本科根结线虫的易感性,而利用CRISPR/Cas9基因编辑感病品种日本晴OsThil基因显著增强了水稻对根结线虫的抗性,而且,表型比较结果显示OsThil突变植株与野生型日本晴植株没有明显差异(如图6所示)。The results are shown in Figure 7. Compared with Nipponbare rice, overexpression of the OsThil gene in the susceptible variety Nipponbare significantly enhanced the susceptibility to root-knot nematodes of the Poaceae family, while using CRISPR/Cas9 gene editing of the OsThil gene in the susceptible variety Nipponbare significantly enhanced the resistance of rice to root-knot nematodes. Moreover, phenotypic comparison results showed that there was no significant difference between the OsThil mutant plants and the wild-type Nipponbare plants (as shown in Figure 6).

以上所述的实施例仅是对本发明的优选方式进行描述,并非对本发明的范围进行限定,在不脱离本发明设计精神的前提下,本领域普通技术人员对本发明的技术方案做出的各种变形和改进,均应落入本发明权利要求书确定的保护范围内。The embodiments described above are only descriptions of the preferred modes of the present invention, and are not intended to limit the scope of the present invention. Without departing from the design spirit of the present invention, various modifications and improvements made to the technical solutions of the present invention by ordinary technicians in this field should all fall within the protection scope determined by the claims of the present invention.

Claims (8)

1. The application of the rice root knot nematode disease gene OsThil in the following (1) or (2):
(1) The application in regulating and controlling the resistance of rice to root-knot nematodes;
(2) Application in cultivating transgenic rice with enhanced susceptibility or resistance to root-knot nematode;
Wherein the nucleotide sequence of the rice root-knot nematode disease gene OsThil is shown as SEQ ID NO. 1.
2. Application of protein expressed by the rice root-knot nematode-susceptibility gene OsThil in culturing transgenic rice with enhanced susceptibility to rice root-knot nematode, wherein the nucleotide sequence of the rice root-knot nematode-susceptibility gene OsThil is shown as SEQ ID NO. 1.
3. Application of a recombinant vector containing a rice root-knot nematode-susceptibility gene OsThil in culturing transgenic rice with enhanced susceptibility to rice root-knot nematodes, wherein the nucleotide sequence of the rice root-knot nematode-susceptibility gene OsThil is shown as SEQ ID NO. 1.
4. The application of a host cell containing a recombinant vector containing a rice root-knot nematode disease gene OsThil in culturing transgenic rice with enhanced susceptibility to rice root-knot nematodes is provided, wherein the nucleotide sequence of the rice root-knot nematode disease gene OsThil is shown as SEQ ID NO. 1.
5. The use according to claim 1, wherein the resistance of rice to root knot nematodes is enhanced by reducing, interfering with the expression of said rice root knot nematode-feel gene OsThil, or knocking out said rice root knot nematode-feel gene OsThil; the rice root-knot nematode disease gene OsThil is overexpressed, so that the susceptibility of the rice to the root-knot nematodes is enhanced.
6. The use according to any one of claims 2 to 4, wherein the susceptibility of rice to root knot nematodes is enhanced by overexpressing the rice root knot nematode disease gene OsThil.
7. A method for cultivating transgenic rice for enhancing susceptibility of rice to root-knot nematodes is characterized by comprising the steps of over-expressing a rice root-knot nematode susceptibility gene OsThil in rice, and cultivating to obtain transgenic rice for enhancing susceptibility of rice to root-knot nematodes; the nucleotide sequence of the rice root-knot nematode disease gene OsThil is shown as SEQ ID NO. 1.
8. A method for cultivating transgenic rice for enhancing the resistance of rice to root-knot nematodes is characterized by comprising the steps of knocking out a rice root-knot nematode-induced gene OsThil from the rice, and cultivating the transgenic rice for enhancing the resistance of the rice to the root-knot nematodes; the nucleotide sequence of the rice root-knot nematode disease gene OsThil is shown as SEQ ID NO. 1.
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