CN116640753B - Pyruvate decarboxylase gene FvPDC6 and its application in improving mycelial protein production of Fusarium venetiensis - Google Patents
Pyruvate decarboxylase gene FvPDC6 and its application in improving mycelial protein production of Fusarium venetiensis Download PDFInfo
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- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
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Abstract
Description
技术领域Technical field
本发明属于威尼斯镰刀菌基因工程技术领域,涉及丙酮酸脱羧酶基因FvPDC6及其在提高威尼斯镰刀菌菌丝蛋白产量中的应用。The invention belongs to the technical field of Fusarium veniceae genetic engineering technology and relates to the pyruvate decarboxylase gene FvPDC6 and its application in increasing the production of Fusarium venicelis mycelium protein.
背景技术Background technique
我国是人口大国,蛋白资源需求量巨大,缺口超过1亿吨;加上人口增长、环境污染、气候变化等因素的影响,导致传统农畜牧业的蛋白供给不足。此外,随着消费者经济水平的提高,人们对肉类蛋白的需求也从基本的“保障供给”转向“营养健康”。因此,急需一种新的蛋白供给模式以保障肉类食品的营养价值、安全性和可持续性。威尼斯镰刀菌是从3000多株真菌中筛选到的可用于发酵生产菌丝蛋白的工业菌株,具有很好的安全性,已在全球18个国家获得食品原料上市许可。该菌株发酵产生的菌丝蛋白具有类似肉质的组织结构,并且脂肪含量低,氨基酸种类齐全,富含微量元素和维生素,同时还含有丰富的可食性粗纤维,是一种能够满足于现代人营养需求的肉类代用品。my country is a country with a large population and has a huge demand for protein resources, with a gap of more than 100 million tons. Coupled with the effects of population growth, environmental pollution, climate change and other factors, the protein supply of traditional agriculture and animal husbandry is insufficient. In addition, with the improvement of consumers' economic level, people's demand for meat protein has also shifted from basic "guaranteed supply" to "nutritional and healthy". Therefore, there is an urgent need for a new protein supply model to ensure the nutritional value, safety and sustainability of meat products. Fusarium venicelis is an industrial strain selected from more than 3,000 strains of fungi that can be used for fermentation to produce mycelium protein. It has good safety and has obtained marketing authorization for food raw materials in 18 countries around the world. The mycelium protein produced by fermentation of this strain has a meat-like tissue structure, low fat content, complete types of amino acids, rich in trace elements and vitamins, and is also rich in edible crude fiber. It is a kind of nutrition that can satisfy modern people. Meat substitutes in demand.
当前,威尼斯镰刀菌发酵生产菌丝蛋白主要采用以葡萄糖为碳源的生产工艺,但是由于发酵过程副产物的产生导致其碳源转化效率低下,造成葡萄糖的过多损失,而葡萄糖的获取主要依赖于粮食作物。因此,无论是从控制菌丝蛋白的生产成本还是维护国家粮食安全出发,都有必要提高葡萄糖为碳源发酵生产菌丝蛋白时的碳源转化率。Currently, the production of mycelin by Fusarium veniceae fermentation mainly uses glucose as the carbon source. However, due to the production of by-products during the fermentation process, the carbon source conversion efficiency is low, resulting in excessive loss of glucose, and the acquisition of glucose mainly relies on on food crops. Therefore, whether it is to control the production cost of mycelin or to maintain national food security, it is necessary to improve the carbon source conversion rate when glucose is used as a carbon source to ferment mycelin to produce mycelin.
发明内容Contents of the invention
本发明的一个目的是解决至少上述问题和/或缺陷,并提供至少后面将说明的优点。It is an object of the present invention to solve at least the above problems and/or disadvantages and to provide at least the advantages to be explained below.
本发明再有一个目的是提供一种丙酮酸脱羧酶基因FvPDC6。 Another object of the present invention is to provide a pyruvate decarboxylase gene FvPDC6.
本发明另有一个目的是提供一种提高威尼斯镰刀菌菌丝蛋白产量的方法。Another object of the present invention is to provide a method for increasing the production of mycelium protein of Fusarium venicelis.
本发明还有一个目的是提供所述的丙酮酸脱羧酶基因FvPDC6或所述的蛋白质或所述的菌株威尼斯镰刀菌TB6050在提高威尼斯镰刀菌菌丝蛋白产量中的应用。Another object of the present invention is to provide the application of the pyruvate decarboxylase gene FvPDC6 or the protein or the strain Fusarium veniceris TB6050 in increasing the production of mycelium protein of Fusarium venicelis.
为此,本发明提供的技术方案为:To this end, the technical solution provided by the present invention is:
丙酮酸脱羧酶基因FvPDC6,所述丙酮酸脱羧酶基因FvPDC6的缺失在威尼斯镰刀菌中提供促进菌丝蛋白产量提高的功能,所述丙酮酸脱羧酶基因FvPDC6为如下a)、b)或c)的碱基序列:Pyruvate decarboxylase gene FvPDC6 , the deletion of the pyruvate decarboxylase gene FvPDC6 provides the function of promoting the increase of mycelium protein production in Fusarium venicelis, the pyruvate decarboxylase gene FvPDC6 is as follows a), b) or c) The base sequence of:
a)如SEQ ID NO:6所示;a) As shown in SEQ ID NO:6;
b)编码如SEQ ID NO:12所示的氨基酸序列的核苷酸序列;b) A nucleotide sequence encoding the amino acid sequence shown in SEQ ID NO:12;
c)在严谨杂交条件下与a)限定的核苷酸序列杂交且编码具有控制乙醇合成的核苷酸序列。c) Hybridizes to the nucleotide sequence defined in a) under stringent hybridization conditions and encodes a nucleotide sequence that controls ethanol synthesis.
一种重组载体,其含有所述的丙酮酸脱羧酶基因FvPDC6和与所述丙酮酸脱羧酶基因FvPDC6可操作地连接的用于表达的序列。A recombinant vector containing the pyruvate decarboxylase gene FvPDC6 and a sequence for expression operably connected to the pyruvate decarboxylase gene FvPDC6 .
宿主细胞,所述宿主细胞含有所述的丙酮酸脱羧酶基因FvPDC6或所述的重组载体。A host cell containing the pyruvate decarboxylase gene FvPDC6 or the recombinant vector.
促进菌丝蛋白产量提高的蛋白质,所述蛋白质的氨基酸序列如SEQ ID NO:12所示。A protein that promotes increased mycelium protein production, the amino acid sequence of the protein is shown in SEQ ID NO: 12.
一株威尼斯镰刀菌,所述威尼斯镰刀菌为威尼斯镰刀菌TB6050,其分类命名为:威尼斯镰刀菌(Fusarium venenatum),威尼斯镰刀菌(Fusarium venenatum)TB6050被保藏在中国微生物菌种保藏管理委员会普通微生物中心(简称CGMCC),保藏号为:CGMCC NO.40527,保藏时间为:2023年03月17日,保藏单位地址为:北京市朝阳区北辰西路1号院3号。A strain of Fusarium venezali, which is Fusarium venezali TB6050, its classification name is: Fusarium venenatum ( Fusarium venenatum ), Fusarium venenatum ( Fusarium venenatum ) TB6050 is deposited in the General Microorganisms Committee of China Microorganism Culture Collection and Management Committee Center (CGMCC for short), the preservation number is: CGMCC NO.40527, the preservation time is: March 17, 2023, and the address of the preservation unit is: No. 3, Yard 1, Beichen West Road, Chaoyang District, Beijing.
一种提高威尼斯镰刀菌菌丝蛋白产量的方法,包括如下步骤:A method for improving mycelium protein production of Fusarium venicelis, comprising the following steps:
1)敲除镰刀菌体内的丙酮酸脱羧酶基因FvPDC6,得到丙酮酸脱羧酶基因FvPDC6敲除的新的镰刀菌;1) Knock out the pyruvate decarboxylase gene FvPDC6 in Fusarium and obtain a new Fusarium with the pyruvate decarboxylase gene FvPDC6 knocked out;
2)将所述新的镰刀菌接种于液体培养基中进行培养,获取发酵液,并从生长的发酵液中收获菌丝蛋白。2) Inoculate the new Fusarium into a liquid medium for culture, obtain fermentation broth, and harvest mycelium protein from the growing fermentation broth.
优选的是,所述的提高威尼斯镰刀菌菌丝蛋白产量的方法中,得到所述新的镰刀菌的方法包括如下步骤:Preferably, in the method for improving the mycelium production of Fusarium venicelis, the method for obtaining the new Fusarium includes the following steps:
以威尼斯镰刀菌TB01的DNA基因组为模板,以如SEQ ID NO:13和14所示的一组引物对为引物,通过PCR扩增得到内源5SrRNA启动子序列;The endogenous 5SrRNA promoter sequence was obtained by PCR amplification using the DNA genome of Fusarium venetiensis TB01 as a template and a set of primer pairs as shown in SEQ ID NO: 13 and 14 as primers;
以如SEQ ID No:18所示的gRNA scaffold片段为模板,以如SEQ ID NO:15和16所示的一组引物对为引物,通过PCR扩增得到sgRNAFvPDC序列;Using the gRNA scaffold fragment shown in SEQ ID No: 18 as a template and a set of primer pairs shown in SEQ ID NO: 15 and 16 as primers, the sgRNA FvPDC sequence is obtained through PCR amplification;
随后通过融合PCR进行两轮扩增,将所述内源5SrRNA启动子序列与所述sgRNAFvPDC序列进行融合,并通过同源重组酶将融合后的片段插入到骨架载体pFC322-Cas9的PacI位点上获得FvPDC6基因编辑表达载体;Subsequently, two rounds of amplification were performed by fusion PCR to fuse the endogenous 5SrRNA promoter sequence with the sgRNA FvPDC sequence, and the fused fragment was inserted into the PacI site of the backbone vector pFC322-Cas9 by homologous recombinase. The FvPDC6 gene editing expression vector was obtained;
将所述FvPDC6基因编辑表达载体通过原生质体转化方式转化入威尼斯镰刀菌中得到所述新的镰刀菌。The FvPDC6 gene editing expression vector is transformed into Fusarium venicelis through protoplast transformation to obtain the new Fusarium.
优选的是,所述的提高威尼斯镰刀菌菌丝蛋白产量的方法中所述新的镰刀菌为菌株威尼斯镰刀菌TB6050,其分类命名为:威尼斯镰刀菌(Fusarium venenatum),菌株威尼斯镰刀菌(Fusarium venenatum)TB6050被保藏在中国微生物菌种保藏管理委员会普通微生物中心(简称CGMCC),保藏号为:CGMCC NO. 40527,保藏时间为:2023年03月17日,保藏单位地址为:北京市朝阳区北辰西路1号院3号。Preferably, the new Fusarium described in the method for improving mycelium protein production of Fusarium veniceris is strain Fusarium veniceris TB6050, and its classification name is: Fusarium venenatum ( Fusarium venenatum ). venenatum ) TB6050 is deposited in the General Microbiology Center of the China Microbial Culture Collection Committee (CGMCC). The deposit number is: CGMCC NO. 40527. The deposit date is: March 17, 2023. The depository address is: Chaoyang District, Beijing. No. 3, Courtyard 1, Beichen West Road.
优选的是,所述的提高威尼斯镰刀菌菌丝蛋白产量的方法中,步骤2)中,所述液体培养基为发酵培养基,培养中,培养温度为26-30℃,培养时间为3-天,所述发酵培养基包含:40 g/L 葡萄糖, 0.5 g/L 酵母粉,6 g/L 硫酸铵,1.5 g/L 硫酸镁, 0.7 g/L 氯化钾,0.5 g/L 硫酸钠,2 g/L 磷酸二氢钾和0.5 g/L 碳酸钙。Preferably, in the method for increasing the production of mycelium protein of Fusarium vulgaris, in step 2), the liquid medium is a fermentation medium, and during the culture, the culture temperature is 26-30°C, and the culture time is 3- day, the fermentation medium contains: 40 g/L glucose, 0.5 g/L yeast powder, 6 g/L ammonium sulfate, 1.5 g/L magnesium sulfate, 0.7 g/L potassium chloride, 0.5 g/L sodium sulfate , 2 g/L potassium dihydrogen phosphate and 0.5 g/L calcium carbonate.
所述的丙酮酸脱羧酶基因FvPDC6或所述的蛋白质或所述的菌株威尼斯镰刀菌TB6050在提高威尼斯镰刀菌菌丝蛋白产量中的应用。Application of the pyruvate decarboxylase gene FvPDC6 or the protein or the strain Fusarium veniceris TB6050 in increasing the production of mycelium protein of Fusarium venicelis.
本发明至少包括以下有益效果:The present invention at least includes the following beneficial effects:
本发明通过敲除威尼斯镰刀菌一个内源丙酮酸脱羧酶可以完全切除发酵过程中副产物乙醇的合成,从而显著提高碳源向菌丝蛋白合成的流向,有效提高葡萄糖的利用率,降低菌丝蛋白发酵的生产成本。The present invention can completely remove the synthesis of by-product ethanol during the fermentation process by knocking out an endogenous pyruvate decarboxylase of Fusarium venicelis, thereby significantly increasing the flow of carbon sources to mycelial protein synthesis, effectively improving the utilization of glucose, and reducing mycelium Production costs of protein fermentation.
本发明的其它优点、目标和特征将部分通过下面的说明体现,部分还将通过对本发明的研究和实践而为本领域的技术人员所理解。Other advantages, objects, and features of the present invention will be apparent in part from the description below, and in part will be understood by those skilled in the art through study and practice of the present invention.
附图说明Description of the drawings
图1展示本发明实施例中威尼斯镰刀菌内源主效丙酮酸脱羧酶基因FvPDC6的挖掘:A图,各丙酮酸脱羧酶基因在不同发酵阶段表达水平的热图;B图,各丙酮酸脱羧酶基因的序列进化树和序列结构分析。Figure 1 shows the mining of the endogenous main pyruvate decarboxylase gene FvPDC6 of Fusarium venicelis in the embodiment of the present invention: Figure A, a heat map of the expression levels of each pyruvate decarboxylase gene at different fermentation stages; Figure B, each pyruvate decarboxylation Sequence evolutionary tree and sequence structure analysis of enzyme genes.
图2展示本发明实施例中FvPDC6的基因编辑表达载体的构建:A图,FvPDC6的基因编辑表达载体示意图;B图,FvPDC6的基因编辑表达载体PacI酶切电泳结果;C图,FvPDC6的基因编辑表达载体中5SrRNA-sgRNAFvPDC片段的测序比对结果。Figure 2 shows the construction of the gene editing expression vector of FvPDC6 in the embodiment of the present invention: Figure A, a schematic diagram of the gene editing expression vector of FvPDC6 ; Figure B, the result of PacI digestion electrophoresis of the gene editing expression vector of FvPDC6 ; Figure C, the gene editing of FvPDC6 Sequencing comparison results of the 5SrRNA-sgRNA FvPDC fragment in the expression vector.
图3展示本发明实施例中FvPDC6基因编辑转化子的PCR扩增及测序:A图,FvPDC6基因编辑转化子的PCR扩增后电泳结果,M,DNA marker;B图,FvPDC6基因编辑转化子的PCR扩增测序后的比对结果。Figure 3 shows the PCR amplification and sequencing of the FvPDC6 gene-edited transformants in the embodiment of the present invention: Figure A, the electrophoresis results of the FvPDC6 gene-edited transformants after PCR amplification, M, DNA marker; Figure B, the results of the FvPDC6 gene-edited transformants Comparison results after PCR amplification and sequencing.
图4为本发明实施例中威尼斯镰刀菌发酵上清液中的乙醇含量检测图,WT,野生型威尼斯镰刀菌TB01(CGMCC NO.20740);1-5,FvPDC6基因编辑转化子。Figure 4 is a detection chart of the ethanol content in the fermentation supernatant of Fusarium venicelis in the embodiment of the present invention, WT, wild-type Fusarium venicelis TB01 (CGMCC NO. 20740); 1-5, FvPDC6 gene editing transformant.
图5为本发明实施例中威尼斯镰刀菌发酵4天后的生物量及葡萄糖向菌丝蛋白合成的转化率检测图:WT,野生型威尼斯镰刀菌TB01;1-5,FvPDC6基因编辑转化子。Figure 5 is a graph showing the detection of the conversion rate of biomass and glucose into mycelium protein synthesis after 4 days of fermentation by F. veniceris in the embodiment of the present invention: WT, wild-type F. veniceris TB01; 1-5, FvPDC6 gene editing transformant.
威尼斯镰刀菌为威尼斯镰刀菌TB6050,其分类命名为:威尼斯镰刀菌(Fusarium venenatum),菌株威尼斯镰刀菌(Fusarium venenatum)TB6050被保藏在中国微生物菌种保藏管理委员会普通微生物中心(简称CGMCC),保藏号为:CGMCC NO. 40527,保藏时间为:2023年03月17日,保藏单位地址为:北京市朝阳区北辰西路1号院3号。Fusarium veniceae is Fusarium venezalicum TB6050, and its classification name is: Fusarium venenatum ( Fusarium venenatum ). The strain Fusarium venenatum ( Fusarium venenatum ) TB6050 is deposited in the General Microbiology Center of the Chinese Microbiological Culture Collection Committee (CGMCC), and is preserved The number is: CGMCC NO. 40527, the preservation time is: March 17, 2023, and the address of the preservation unit is: No. 3, Yard 1, Beichen West Road, Chaoyang District, Beijing.
具体实施方式Detailed ways
下面结合附图对本发明做进一步的详细说明,以令本领域技术人员参照说明书文字能够据以实施。The present invention will be further described in detail below in conjunction with the accompanying drawings, so that those skilled in the art can implement it with reference to the text of the description.
应当理解,本文所使用的诸如“具有”、“包含”以及“包括”术语并不排除一个或多个其它元件或其组合的存在或添加。It should be understood that terms such as "having," "comprising," and "including" as used herein do not exclude the presence or addition of one or more other elements or combinations thereof.
需要说明的是,下述实施方案中所述实验方法,如无特殊说明,均为常规方法,所述试剂和材料,如无特殊说明,均可从商业途径获得。It should be noted that the experimental methods described in the following embodiments, unless otherwise specified, are all conventional methods, and the reagents and materials, unless otherwise specified, can be obtained from commercial sources.
本发明提供一个威尼斯镰刀菌TB01内源主效丙酮酸脱羧酶基因FvPDC6和该基因敲除后获得的高效生产菌丝蛋白的菌株威尼斯镰刀菌TB6050,包括内源丙酮酸脱羧酶基因FvPDC6(FVRRES_12865)的挖掘,FvPDC6基因编辑表达载体的构建及镰刀菌该基因编辑转化子的获得,其中所述丝状真菌是威尼斯镰刀菌TB6050,其分类命名为:威尼斯镰刀菌(Fusarium venenatum),菌株威尼斯镰刀菌(Fusarium venenatum)TB6050被保藏在中国微生物菌种保藏管理委员会普通微生物中心(简称CGMCC),保藏号为:CGMCC NO. 40527,保藏时间为:2023年03月17日,保藏单位地址为:北京市朝阳区北辰西路1号院3号。The invention provides an endogenous main pyruvate decarboxylase gene FvPDC6 of Fusarium venicelis TB01 and a strain Fusarium veniceris TB6050 that efficiently produces mycelial protein obtained after knocking out the gene, including the endogenous pyruvate decarboxylase gene FvPDC6 (FVRRES_12865). Excavation, construction of FvPDC6 gene editing expression vector and acquisition of the gene editing transformant of Fusarium, wherein the filamentous fungus is Fusarium venetiensis TB6050, its classification is named: Fusarium venenatum ( Fusarium venenatum ), strain Fusarium veniceris ( Fusarium venenatum ) TB6050 is deposited in the General Microbiology Center of the China Council for the Collection of Microbial Cultures (CGMCC for short). The preservation number is: CGMCC NO. 40527. The preservation time is: March 17, 2023. The address of the preservation unit is: Beijing. No. 3, Courtyard 1, Beichen West Road, Chaoyang District.
具体地,包括如下步骤:Specifically, it includes the following steps:
1)威尼斯镰刀菌主效丙酮酸脱羧酶基因FvPDC6的挖掘1) Excavation of the main pyruvate decarboxylase gene FvPDC6 of Fusarium venicelis
通过对不同发酵阶段(未开始产乙醇--产乙醇对数期--产乙醇饱和期)菌体的转录组学分析,从威尼斯镰刀菌6个内源丙酮酸脱羧酶基因中挖掘到一个控制乙醇合成的主效丙酮酸脱羧酶基因。对六个内源丙酮酸脱羧酶进行进化树和序列分析发现,相比其他5个丙酮酸脱羧酶基因(FvPDC1-5),FvPDC6基因在进化上处于单独分支,并且只有该基因的序列内部包含内含子。Through transcriptomic analysis of bacteria in different fermentation stages (not starting to produce ethanol - logarithmic phase of ethanol production - saturation phase of ethanol production), a control gene was discovered from the six endogenous pyruvate decarboxylase genes of Fusarium veniceris The main pyruvate decarboxylase gene for ethanol synthesis. Phylogenetic tree and sequence analysis of six endogenous pyruvate decarboxylase genes found that compared to the other five pyruvate decarboxylase genes ( FvPDC1-5 ), the FvPDC6 gene is in a separate branch evolutionarily, and only the sequence of this gene contains Introns.
2)威尼斯镰刀菌主效丙酮酸脱羧酶基因FvPDC6的基因编辑表达载体构建2) Construction of gene editing expression vector for the main pyruvate decarboxylase gene FvPDC6 of Fusarium venicelis
以引物对5SrRNA-1/2从威尼斯镰刀菌TB01的DNA基因组中扩出内源5SrRNA启动子序列(FVRRES_5S_rRNA_393),以引物对sgRNA-1/2在人工合成的gRNA scaffold片段的基础上扩出sgRNAFvPDC序列。随后通过融合PCR进行两轮扩增,将5SrRNA片段与sgRNAFvPDC片段进行融合获得5SrRNA-sgRNAFvPDC,并通过同源重组酶将融合后的片段连接到骨架载体pFC322-Cas9(Wilson FM, Harrison RJ (2021) CRISPR-Cas9 mediated editing of the QuornfungusFusarium venenatumA3/5 by transient expression of Cas9 and sgRNAstargeting endogenous marker genePKS12. Fungal Biol Biotechnol 8:15. https://doi.org/10.1186/s40694-021-00121-8)上获得FvPDC6基因编辑表达载体。将其进行大肠杆菌DH5α转化后挑选单菌落进行PCR验证,获得阳性转化子。The primer pair 5SrRNA-1/2 was used to amplify the endogenous 5SrRNA promoter sequence (FVRRES_5S_rRNA_393) from the DNA genome of Fusarium Venetiae TB01, and the primer pair sgRNA-1/2 was used to amplify sgRNA based on the artificially synthesized gRNA scaffold fragment. FvPDC sequence. Subsequently, two rounds of amplification were performed by fusion PCR, and the 5SrRNA fragment and the sgRNA FvPDC fragment were fused to obtain 5SrRNA-sgRNA FvPDC , and the fused fragment was connected to the backbone vector pFC322-Cas9 by homologous recombinase (Wilson FM, Harrison RJ (Wilson FM, Harrison RJ ( 2021) CRISPR-Cas9 mediated editing of the Quornfungus Fusarium venenatum A3/5 by transient expression of Cas9 and sgRNAstargeting endogenous marker gene PKS12 . Fungal Biol Biotechnol 8:15. https://doi.org/10.1186/s40694-021-00121- 8) Obtain the FvPDC6 gene editing expression vector. After transforming E. coli DH5α, single colonies were selected for PCR verification and positive transformants were obtained.
3)威尼斯镰刀菌丙酮酸脱羧酶基因FvPDC6编辑突变体的获得3) Obtaining editing mutants of FvPDC6 pyruvate decarboxylase gene from Fusarium venicelis
提取上述阳性大肠杆菌的质粒,并通过PEG介导的原生质体转化法导入到威尼斯镰刀菌TB01中获得候选FvPDC6基因编辑转化子。通过裂解法制备候选转化子的DNA简易模板,并以引物对PDFyz-1/2从简易模板中扩增靶标基因序列,随后进行测序比对鉴定出阳性的FvPDC6基因编辑突变体。The above-mentioned positive E. coli plasmid was extracted and introduced into Fusarium veniceris TB01 through PEG-mediated protoplast transformation to obtain candidate FvPDC6 gene editing transformants. A simple DNA template of the candidate transformant was prepared by the lysis method, and the target gene sequence was amplified from the simple template using the primer pair PDFyz-1/2, and then sequenced and compared to identify the positive FvPDC6 gene editing mutant.
4)FvPDC6基因编辑突变体1L摇瓶发酵4) FvPDC6 gene editing mutant 1L shake flask fermentation
将菌株接种CMC-Na固体培养基上培养10天,随后制备5 × 106conidia/mL浓度的孢悬液。取400 μL上述孢悬液接种于300 mL发酵培养基中,于28℃,180 rmp摇床上培养4天。The strain was inoculated on CMC-Na solid medium and cultured for 10 days, and then a spore suspension with a concentration of 5 × 10 6 conidia/mL was prepared. Take 400 μL of the above spore suspension and inoculate it into 300 mL fermentation medium, and culture it on a shaker at 28°C and 180 rpm for 4 days.
5)FvPDC6基因编辑突变体乙醇含量的测定5) Determination of ethanol content of FvPDC6 gene-edited mutants
将上述发酵4天后的菌体进行离心,收获无细胞上清液。随后采用以异丁醇为内标利用气相色谱仪检测样品中的乙醇浓度。所用分离柱为HP - InnoWax 30 m × 0.32 mm× 0.25µm色谱柱,检测条件为进样口和检测器的温度分别为200 ℃和250 ℃;柱箱初始柱温为60 ℃,保持1 min,第一阶以10 ℃/min的速率升至100 ℃,保持2 min,第二阶以30℃/min的速率升至200 ℃,保持6 min。The bacterial cells after 4 days of fermentation were centrifuged, and the cell-free supernatant was harvested. The ethanol concentration in the sample was then detected using gas chromatography using isobutanol as the internal standard. The separation column used is HP-InnoWax 30 m × 0.32 mm × 0.25 µm chromatographic column. The detection conditions are that the temperatures of the inlet and detector are 200 ℃ and 250 ℃ respectively; the initial column temperature of the column oven is 60 ℃ and maintained for 1 min. The first step was raised to 100°C at a rate of 10°C/min and held for 2 min. The second step was raised to 200°C at a rate of 30°C/min and held for 6 min.
6)FvPDC6基因编辑突变体碳源转化效率的评估。6) Evaluation of carbon source conversion efficiency of FvPDC6 gene editing mutants.
取100 mL上述发酵4天后的菌体进行抽滤,分别收获菌体和无细胞上清液。利用烘箱将菌体烘干至恒重,计算其生物量(g/L);通过在线生化分析仪测定上清液中残留葡萄糖的浓度,最终计算葡萄糖向菌丝蛋白的转化效率(g/g),计算公式为:生物量/(初始糖浓度-残留糖浓度)Take 100 mL of the above-mentioned bacterial cells after 4 days of fermentation and perform suction filtration, and harvest the bacterial cells and cell-free supernatant respectively. Use an oven to dry the cells to constant weight, and calculate their biomass (g/L); measure the concentration of residual glucose in the supernatant using an online biochemical analyzer, and finally calculate the conversion efficiency of glucose to mycelium (g/g ), the calculation formula is: biomass/(initial sugar concentration-residual sugar concentration)
为使本领域技术人员更好地理解本发明的技术方案,现提供如下的实施例进行说明:In order to enable those skilled in the art to better understand the technical solutions of the present invention, the following examples are provided for illustration:
实施例1:威尼斯镰刀菌主效丙酮酸脱羧酶基因FvPDC6的挖掘Example 1: Excavation of the main pyruvate decarboxylase gene FvPDC6 of Fusarium venicelis
1.实验方法:1.Experimental method:
在威尼斯镰刀菌不同发酵阶段(未开始产乙醇--产乙醇对数期--产乙醇饱和期)菌体的转录组学中检索出6个丙酮酸脱羧酶基因FvPDC1-6,核苷酸序列分别为SEQ ID No:1-6所示,氨基酸序列分别为SEQ ID No:7-12,并根据其表达丰度利用TBtools软件(ChenC,Chen H, Zhang Y, Thomas HR, Frank MH, He Y, Xia R (2020) Tbtools: anintegrative toolkit developed for interactive analyses of big biologicaldata.Mol Plant 13(8):1194-1202. https://doi.org/10.1016/j.molp.2020.06.009)绘制热图。同时通过TBtools软件对检索到的6个内源丙酮酸脱羧酶基因的进化关系及序列特征进行绘图展示。Six pyruvate decarboxylase genes, FvPDC1-6 , were retrieved from the transcriptome of Fusarium veniceris bacteria at different fermentation stages (ethanol production has not begun - logarithmic phase of ethanol production - saturation phase of ethanol production), and the nucleotide sequences are They are shown in SEQ ID No:1-6 respectively, and the amino acid sequences are SEQ ID No:7-12 respectively, and according to their expression abundance, TBtools software (ChenC, Chen H, Zhang Y, Thomas HR, Frank MH, He Y , Xia R (2020) Tbtools: anintegrative toolkit developed for interactive analyzes of big biologicaldata. Mol Plant 13(8):1194-1202. https://doi.org/10.1016/j.molp.2020.06.009) drawing heat maps . At the same time, the evolutionary relationships and sequence characteristics of the six retrieved endogenous pyruvate decarboxylase genes were plotted and displayed using TBtools software.
分析结果如图1所示,丙酮酸脱羧酶基因FvPDC6在发酵过程中高水平表达,尤其是在发酵中后期(高产乙醇)阶段其表达进一步增强。进化树和基因序列分析显示,相比其他5个丙酮酸脱羧酶基因(FvPDC1-5),FvPDC6基因在进化上处于单独分支,并且只有该基因的序列内部包含内含子。The analysis results are shown in Figure 1. The pyruvate decarboxylase gene FvPDC6 is expressed at a high level during the fermentation process, especially in the middle and late stages of fermentation (high ethanol production). Its expression is further enhanced. Phylogenetic tree and gene sequence analysis showed that compared with the other five pyruvate decarboxylase genes ( FvPDC1-5 ), the FvPDC6 gene is in a separate branch in evolution, and only the sequence of this gene contains introns.
实施例2:威尼斯镰刀菌丙酮酸脱羧酶基因FvPDC6的基因编辑表达载体构建Example 2: Construction of a gene-edited expression vector for the F. veniceris pyruvate decarboxylase gene FvPDC6
1.引物1. Primers
2.片段扩增及同源重组程序2. Fragment amplification and homologous recombination procedures
3.实验方法3. Experimental methods
以引物对5SrRNA-1/2(SEQ ID No:13和14)从威尼斯镰刀菌TB01的DNA基因组中扩出内源5SrRNA启动子序列(FVRRES_5S_rRNA_393 ,SEQID NO:17),以引物对sgRNA-1/2(SEQID NO:15和16)在人工合成的gRNAscaffold片段(SEQ ID NO:18)的基础上扩出sgRNAFvPDC序列(SEQ ID NO:19)。随后通过融合PCR进行两轮扩增,将5SrRNA片段与sgRNAFvPDC片段进行融合,并通过同源重组酶将融合后的片段插入到骨架载体pFC322-Cas9的PacI位点上获得FvPDC6基因编辑表达载体。将其进行大肠杆菌DH5α转化后挑选单菌落活化提取质粒后进行PacI酶切验证,并将酶切验证正确的转化子作进一步测序确认。The endogenous 5SrRNA promoter sequence (FVRRES_5S_rRNA_393, SEQ ID NO:17) was amplified from the DNA genome of Fusarium venicelis TB01 with the primer pair 5SrRNA-1/2 (SEQ ID No:13 and 14), and the primer pair sgRNA-1/ 2 (SEQ ID NO:15 and 16) amplified the sgRNA FvPDC sequence (SEQ ID NO:19) based on the artificially synthesized gRNAscaffold fragment (SEQ ID NO:18). Subsequently, two rounds of amplification were performed through fusion PCR to fuse the 5SrRNA fragment with the sgRNA FvPDC fragment, and the fused fragment was inserted into the PacI site of the backbone vector pFC322-Cas9 using homologous recombinase to obtain the FvPDC6 gene editing expression vector. Transform it into Escherichia coli DH5α, select a single colony, activate it, extract the plasmid, and perform PacI digestion verification, and the transformants that are correct after digestion verification will be further sequenced for confirmation.
4.结果4.Results
实验结果如图2所示,电泳结果和序列测序比对结果显示,融合片段5SrRNA-sgRNAFvPDC已经成功融合到基因编辑表达载体pFC322-Cas9上,随后将正确质粒置于-20℃保存。The experimental results are shown in Figure 2. The electrophoresis results and sequence sequencing comparison results show that the fusion fragment 5SrRNA-sgRNA FvPDC has been successfully fused to the gene editing expression vector pFC322-Cas9. The correct plasmid was then stored at -20°C.
实施例3:威尼斯镰刀菌丙酮酸脱羧酶基因FvPDC6编辑突变体的获得Example 3: Obtaining editing mutants of the FvPDC6 pyruvate decarboxylase gene of Fusarium venicelis
1.培养基1. Culture medium
YEPD: 酵母粉3g,蛋白胨10g,葡萄糖20g,定容到1LYEPD: 3g yeast powder, 10g peptone, 20g glucose, adjust the volume to 1L
溶解酶的缓冲液:0.7 M氯化钠Buffer for solubilizing enzyme: 0.7 M sodium chloride
STC:0.8 M山梨醇;50 mM CaCl2,50 mM Tris-HCl(pH 8.0)STC: 0.8 M Sorbitol; 50 mM CaCl 2 , 50 mM Tris-HCl (pH 8.0)
SPTC:含40% PEG6000的STCSPTC: STC containing 40% PEG6000
再生培养基:酵母提取物1 g,胰蛋白胨1 g,蔗糖274 g,琼脂糖10 g,定容1 LRegeneration medium: 1 g yeast extract, 1 g tryptone, 274 g sucrose, 10 g agarose, adjusted to 1 L
筛选培养基:葡萄糖30 g,酵母粉6 g,琼脂粉15 g,定容到1 LScreening medium: 30 g glucose, 6 g yeast powder, 15 g agar powder, dilute to 1 L
菌丝裂解液:取1.2 gNaOH用去离子水溶解后定容至100 mL。Mycelium lysis solution: Dissolve 1.2 gNaOH in deionized water and dilute to 100 mL.
菌丝中和液:10 mL 1M Tris-HCl(pH8.0),40 mL 0.3 M HCl,用去离子水定容至800 mL。Mycelial neutralization solution: 10 mL 1M Tris-HCl (pH8.0), 40 mL 0.3 M HCl, dilute to 800 mL with deionized water.
2.引物2. Primers
3.片段扩增程序3. Fragment amplification procedure
4.实验方法4. Experimental methods
1.原生质体转化1. Protoplast transformation
1)吐温80制备威尼斯镰刀菌TB01孢悬液,涂于GY固体培养基上,28℃,培养7-10 d产孢。1) Prepare Fusarium Venetiae TB01 spore suspension in Tween 80, apply it on GY solid medium, culture at 28°C for 7-10 days to produce spores.
2)制备孢悬液接于YEPD液体培养基中(加玻璃珠),28℃,200 rmp培养至萌发菌丝长度为孢子的3-4倍(16 h)。2) Prepare the spore suspension and add it to YEPD liquid medium (add glass beads), and culture at 28°C and 200 rpm until the length of the germinated hyphae is 3-4 times the length of the spores (16 h).
3)4℃,13000 rpm,15 min收集孢子,并用无菌0.7 M氯化钠洗涤1次。3) Collect spores at 4°C, 13000 rpm, 15 min, and wash once with sterile 0.7 M sodium chloride.
4)酶裂解液制备原生质体(20 mg崩溃酶+40 mg蜗牛酶溶于10 ml 0.7 M氯化钠,并过滤除菌),30℃ 100 rpm裂解2 h4) Prepare protoplasts from enzyme lysis solution (20 mg collapsin + 40 mg helicase dissolved in 10 ml 0.7 M sodium chloride, and filtered and sterilized), lyse at 30°C for 2 hours at 100 rpm
5)三层擦镜纸过滤后4℃,7000 rpm,10 min5) After filtering with three layers of lens cleaning paper, 4℃, 7000 rpm, 10 min
6)STC洗涤2次,按上述离心后用STC重选原生质体(浓度106),放于冰上备用。6) Wash twice with STC, centrifuge as above, use STC to reselect protoplasts (concentration 106), and place on ice for later use.
7)取80 μl上述原生质体悬浮液,加入20 μl SPTC,轻轻混匀,加入FvPDC6的基因编辑表达载体(800 ng/μl)20 μl,轻轻混匀后放置冰上30 min7) Take 80 μl of the above protoplast suspension, add 20 μl SPTC, mix gently, add 20 μl of FvPDC6 gene editing expression vector (800 ng/μl), mix gently and place on ice for 30 minutes
8)加入1 ml SPTC轻轻混匀,室温放置20 min8) Add 1 ml SPTC and mix gently, then leave it at room temperature for 20 minutes.
9)混合液加到40℃左右的再生培养基中,摇匀倒板,28℃培养过夜(12h左右)9) Add the mixed solution to the regeneration medium at about 40°C, shake well and pour the plate, and culture at 28°C overnight (about 12 hours)
10)倒上筛选培养基,28℃培养长出转化子(3-4 d)10) Pour the screening medium and culture at 28°C to grow transformants (3-4 days)
11)针对筛选培养基上长出的转化子,利用菌丝裂解液和中和液对其制备简易模板(取少量菌丝体于8 μl菌丝裂解液中,98℃处理2 min,随后加入170 μl菌丝中和液即为简易模板),并通过引物对PDCyz-1/2(SEQ ID NO:20和21)扩增包含编辑位点的FvPDC6基因片段。11) For the transformants grown on the screening medium, use mycelium lysis solution and neutralization solution to prepare a simple template (take a small amount of mycelium in 8 μl mycelium lysis solution, treat it at 98°C for 2 minutes, and then add 170 μl of mycelial neutralization solution is a simple template), and the FvPDC6 gene fragment containing the editing site is amplified through the primer pair PDCyz-1/2 (SEQ ID NO: 20 and 21).
对扩增片段进行测序比对,鉴定出靶标基因编辑转化子。The amplified fragments were sequenced and compared to identify the target gene editing transformants.
5. 结果5. Results
实验结果如图3所示,FvPDC6基因编辑转化子的PCR扩增及测序比对结果显示,导入FvPDC6基因编辑表达载体后FvPDC6基因在特定sgRNA结合位置发生碱基插入,导致整个基因发生移码突变。The experimental results are shown in Figure 3. The PCR amplification and sequencing comparison results of FvPDC6 gene editing transformants showed that after the FvPDC6 gene editing expression vector was introduced, the FvPDC6 gene underwent base insertion at a specific sgRNA binding position, resulting in a frameshift mutation in the entire gene. .
鉴于与野生型菌株(未被编辑)相比各转化子在乙醇合成和葡萄糖转化效率方面表现出的一致性,选取其中一株2号命名为菌株威尼斯镰刀菌TB6050并进行保藏,其分类命名为:威尼斯镰刀菌(Fusarium venenatum),菌株威尼斯镰刀菌(Fusarium venenatum)TB6050被保藏在中国微生物菌种保藏管理委员会普通微生物中心(简称CGMCC),保藏号为:CGMCC NO. 40527,保藏时间为:2023年03月17日,保藏单位地址为:北京市朝阳区北辰西路1号院3号。In view of the consistency of each transformant in terms of ethanol synthesis and glucose conversion efficiency compared with the wild-type strain (not edited), one of the transformants, No. 2, was selected and named strain Fusarium veniceris TB6050 and preserved. Its classification name is : Fusarium venenatum , strain Fusarium venenatum TB6050 is deposited in the General Microbiology Center of the Chinese Microbial Culture Collection Committee (CGMCC), with the preservation number: CGMCC NO. 40527, and the preservation time is: 2023 On March 17, 2017, the address of the preservation unit is: No. 3, Yard 1, Beichen West Road, Chaoyang District, Beijing.
实施例4:FvPDC6基因编辑突变体1 L摇瓶发酵Example 4: Fermentation of FvPDC6 gene editing mutant in 1 L shake flask
1.培养基1. Culture medium
发酵培养基:40 g/L 葡萄糖, 0.5 g/L 酵母粉, 6 g/L 硫酸铵, 1.5g/L 硫酸镁, 0.7 g/L 氯化钾, 0.5 g/L 硫酸钠, 2 g/L 磷酸二氢钾, 0.5g/L 碳酸钙Fermentation medium: 40 g/L glucose, 0.5 g/L yeast powder, 6 g/L ammonium sulfate, 1.5g/L magnesium sulfate, 0.7 g/L potassium chloride, 0.5 g/L sodium sulfate, 2 g/L Potassium dihydrogen phosphate, 0.5g/L calcium carbonate
2.实验方法2. Experimental methods
将威尼斯镰刀菌菌株接种CMC-Na固体培养基上培养10天进行产孢,随后制备5 ×106conidia/mL浓度的孢悬液。取400 μL上述孢悬液接种于300 mL发酵培养基中,于28℃,180 rmp摇床上培养4天。The Fusarium vulgaris strain was inoculated onto CMC-Na solid medium and cultured for 10 days to produce spores, and then a spore suspension with a concentration of 5 × 10 6 conidia/mL was prepared. Take 400 μL of the above spore suspension and inoculate it into 300 mL fermentation medium, and culture it on a shaker at 28°C and 180 rpm for 4 days.
实施例5:FvPDC6基因编辑突变体乙醇含量的测定Example 5: Determination of ethanol content of FvPDC6 gene-edited mutants
1.试剂1. Reagents
内标液的配制:将3.5 g的异丁醇溶于1 M盐酸中,混合均匀,过滤除菌。Preparation of internal standard solution: Dissolve 3.5 g of isobutanol in 1 M hydrochloric acid, mix evenly, and filter and sterilize.
2.实验方法2. Experimental methods
将实施例3中发酵4天后的菌体进行离心,收获无细胞上清液。随后将上清液与内标液异丁醇按4:1进行混合并用0.22μm过滤器进行过滤。上述混合样品利用气相色谱仪(天美)检测乙醇浓度。所用分离柱为HP - InnoWax 30 m × 0.32 mm × 0.25µm色谱柱(安捷伦),检测条件为进样口和检测器的温度分别为200 ℃和250 ℃;柱箱初始柱温为60 ℃,保持1 min,第一阶以10 ℃/min的速率升至100 ℃,保持2 min,第二阶以30 ℃/min的速率升至200 ℃,保持6 min。The bacterial cells after fermentation for 4 days in Example 3 were centrifuged, and the cell-free supernatant was harvested. The supernatant was then mixed with the internal standard solution isobutanol at a ratio of 4:1 and filtered with a 0.22 μm filter. The ethanol concentration of the above mixed samples was detected using a gas chromatograph (Tianmei). The separation column used is HP-InnoWax 30 m × 0.32 mm × 0.25µm chromatographic column (Agilent). The detection conditions are that the temperatures of the inlet and detector are 200 ℃ and 250 ℃ respectively; the initial column temperature of the column oven is 60 ℃ and maintained 1 min, the first step was raised to 100°C at a rate of 10°C/min and held for 2 min, and the second step was raised to 200°C at a rate of 30°C/min and held for 6 min.
3.实验结果3.Experimental results
实验结果如图4所示,相比野生型菌株,敲除FvPDC6基因后的突变体转化子几乎没有合成乙醇,表明副产物乙醇的合成途径已经被完全阻断,因此葡萄糖向菌丝蛋白合成的转化率有望在突变体菌株中显著提高。The experimental results are shown in Figure 4. Compared with the wild-type strain, the mutant transformant after knocking out the FvPDC6 gene almost did not synthesize ethanol, indicating that the synthesis pathway of by-product ethanol has been completely blocked, so the conversion of glucose to mycelium protein synthesis Transformation rates are expected to be significantly improved in the mutant strains.
实施例6:FvPDC6基因编辑突变体碳源转化效率的评估Example 6: Evaluation of carbon source conversion efficiency of FvPDC6 gene editing mutants
1.实验方法1. Experimental methods
取100 mL实施例3中发酵4天后的菌体进行抽滤,分别收获菌体和无细胞上清液。收集的菌体利用烘箱烘干至恒重,计算其生物量(g/L);收集的上清液稀释100倍后通过在线生化分析仪测定其中残留葡萄糖的浓度,最终计算葡萄糖向菌丝蛋白的转化效率(g/g),计算公式为:生物量/(初始糖浓度-残留糖浓度)。Take 100 mL of the bacterial cells after fermentation for 4 days in Example 3 and perform suction filtration to harvest the bacterial cells and cell-free supernatant respectively. The collected bacterial cells were dried in an oven to constant weight, and their biomass (g/L) was calculated; the collected supernatant was diluted 100 times and the concentration of residual glucose in it was measured using an online biochemical analyzer, and the transfer of glucose to mycelium was finally calculated. The conversion efficiency (g/g) is calculated as: biomass/(initial sugar concentration-residual sugar concentration).
2.实验结果2.Experimental results
实验结果如图5所示,相比威尼斯镰刀菌野生型菌株,FvPDC6基因编辑转化子的生物量略有提升。但是,由于敲除FvPDC6基因后阻断了副产物乙醇的合成,减少了碳源流失,使得葡萄糖利用率显著提升。因此,相比野生型,FvPDC6基因编辑转化子发酵过程中的碳源转化率提升了87%左右(0.194 vs 0.361)。这一转化效率的提升有望使每吨菌丝蛋白的生产成本至少降低9000元(葡萄糖按每吨4000元计算)。The experimental results are shown in Figure 5. Compared with the wild-type strain of Fusarium venetiensis, the biomass of the FvPDC6 gene-edited transformant was slightly increased. However, knocking out the FvPDC6 gene blocks the synthesis of by-product ethanol, reduces the loss of carbon sources, and significantly improves glucose utilization. Therefore, compared with the wild type, the carbon source conversion rate of FvPDC6 gene-edited transformants during fermentation increased by about 87% (0.194 vs 0.361). This improvement in conversion efficiency is expected to reduce the production cost of mycelium protein by at least 9,000 yuan per ton (glucose is calculated as 4,000 yuan per ton).
这里说明的模块数量和处理规模是用来简化本发明的说明的。对本发明的应用、修改和变化对本领域的技术人员来说是显而易见的。The number of modules and processing scale described here are intended to simplify the description of the present invention. Applications, modifications and variations of the invention will be apparent to those skilled in the art.
尽管本发明的实施方案已公开如上,但其并不仅仅限于说明书和实施方式中所列运用,它完全可以被适用于各种适合本发明的领域,对于熟悉本领域的人员而言,可容易地实现另外的修改,因此在不背离权利要求及等同范围所限定的一般概念下,本发明并不限于特定的细节和这里示出与描述的图例。Although the embodiments of the present invention have been disclosed above, they are not limited to the applications listed in the description and embodiments. They can be applied to various fields suitable for the present invention. For those familiar with the art, they can easily Additional modifications may be made, and the invention is therefore not limited to the specific details and illustrations shown and described herein without departing from the general concept defined by the claims and equivalent scope.
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