CN114645021A - Pluripotent stem cell expressing targeted CD47 inhibitory factor, derivative and application thereof - Google Patents
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Abstract
本发明公开了一种表达靶向CD47抑制因子的多能干细胞及其衍生物与应用。该多能干细胞或其衍生物的基因组中导入CD47抑制因子的表达序列,所述CD47抑制因子为靶向CD47的shRNA和/或shRNA‑miR中的至少一种。CD47多能干细胞或其衍生物表达的CD47抑制因子被外泌体包裹后,外泌体携带CD47抑制因子与靶细胞结合,释放其包含的CD47抑制因子,从而阻断CD47通路,解除免疫抑制,激活免疫系统,并恢复NK细胞活性,其能够有效清除肿瘤细胞。The invention discloses a pluripotent stem cell expressing targeting CD47 inhibitory factor, its derivative and application. The expression sequence of CD47 inhibitor is introduced into the genome of the pluripotent stem cell or its derivative, and the CD47 inhibitor is at least one of shRNA and/or shRNA-miR targeting CD47. After the CD47 inhibitory factor expressed by CD47 pluripotent stem cells or their derivatives is encapsulated by exosomes, the exosomes carry the CD47 inhibitory factor and bind to the target cells, releasing the CD47 inhibitory factor contained in the exosomes, thereby blocking the CD47 pathway and relieving immunosuppression. Activates the immune system and restores the activity of NK cells, which can effectively eliminate tumor cells.
Description
技术领域technical field
本发明属于基因工程技术领域,具体涉及一种表达靶向CD47抑制因子的多能干细胞及其衍生物与应用。The invention belongs to the technical field of genetic engineering, and in particular relates to a pluripotent stem cell expressing a targeting CD47 inhibitory factor and its derivatives and applications.
背景技术Background technique
CD47(即整合素相关蛋白,IAP),是一种广泛表达于细胞表面的跨膜糖蛋白,该蛋白属于免疫球蛋白超家族。CD47的分子量在47-55kD之间,包含1个胞外类Ig可变结构域、5个高度疏水延伸的跨膜片段以及1个段选折性拼接的羧基端胞质尾区。CD47是一种多能分子,其主要功能包括:CD47 (ie, integrin-associated protein, IAP) is a transmembrane glycoprotein widely expressed on the cell surface, which belongs to the immunoglobulin superfamily. The molecular weight of CD47 is between 47-55kD, and it contains an extracellular Ig-like variable domain, 5 highly hydrophobicly extending transmembrane fragments and a carboxy-terminal cytoplasmic tail that is selectively spliced. CD47 is a pluripotent molecule whose main functions include:
(1)CD47与CD47配体信号调节蛋白α(signal-regulatory protein,SIRPα)结合并与整合蛋白相互作用,调节细胞间通讯。CD47与巨噬细胞表面的SIRPα结合,激活酪氨酸磷酸化酶,抑制肌球蛋白在巨噬细胞突触膜下装配位点的聚集。因此,如果缺失CD47,则会导致老龄或受损细胞被吞噬。(1) CD47 binds to CD47 ligand signal-regulatory protein α (signal-regulatory protein, SIRPα) and interacts with integrins to regulate intercellular communication. CD47 binds to SIRPα on the surface of macrophages, activates tyrosine phosphorylase, and inhibits the accumulation of myosin at the assembly site under the synaptic membrane of macrophages. Thus, deletion of CD47 results in phagocytosis of aged or damaged cells.
(2)CD47与凝血酶反应蛋白-1结合,参与细胞与胞外机制的相互作用。(2) CD47 binds to thrombin reactive protein-1 and participates in the interaction between cells and extracellular mechanisms.
(3)CD47与细胞的凋亡、增殖、黏附、迁移等细胞学过程密切相关,在免疫及心血管反应中扮演关键角色,是心血管疾病治疗的重要靶标。(3) CD47 is closely related to cell apoptosis, proliferation, adhesion, migration and other cellular processes, plays a key role in immune and cardiovascular responses, and is an important target for the treatment of cardiovascular disease.
(4)CD47与肿瘤免疫逃逸相关,对肿瘤细胞的微环境有重要影响。(4) CD47 is associated with tumor immune escape and has an important impact on the microenvironment of tumor cells.
CD47目前已被发现在多种肿瘤类型中异常表达,包括急性骨髓白血病(AML)、慢性骨髓白血病(CML)、急性淋巴细胞白血病(ALL)、非霍金性淋巴瘤(NHL)、多发性骨髓瘤(MM)、膀胱癌和其他实体瘤。因此,在天然免疫细胞如树突细胞等向适应性免疫T细胞提呈抗原的过程中,CD47也发挥着抑制作用。近些年来,CD47在肿瘤免疫治疗中逐渐升温,是肿瘤免疫治疗的一个潜在有效和广泛应用的靶点,因此许多抑制剂已经被开发出来,可以特异性地阻断CD47-SIRPα信号通路,以增强对肿瘤的免疫应答。CD47 has been found to be abnormally expressed in a variety of tumor types, including acute myeloid leukemia (AML), chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), non-Hodgkin's lymphoma (NHL), multiple myeloma (MM), bladder cancer and other solid tumors. Therefore, CD47 also plays an inhibitory role in the process of antigen presentation to adaptive immune T cells by innate immune cells such as dendritic cells. In recent years, CD47 has gradually increased in tumor immunotherapy, and it is a potentially effective and widely used target for tumor immunotherapy. Therefore, many inhibitors have been developed to specifically block the CD47-SIRPα signaling pathway. Enhance immune response to tumors.
另一方面,在细胞治疗领域,同种异体的免疫兼容问题依然是一大难题。近年已有许多报道通过敲除B2M、CIITA等基因,实现HLA-I和HLA-II细胞表面或本身基因的缺失表达,进而使细胞具备免疫耐受或逃逸T/B细胞特异性免疫应答,产生免疫兼容的通用型PSCs,为更广泛的通用型PSCs源细胞、组织、器官应用奠定了重要的基础。也有报道细胞过表达CTLA4-Ig、PD-L1从而抑制同种异的免疫排斥。然而,这些方案要么免疫兼容不彻底,仍有通过其他途径发生同种异体的免疫排斥;要么彻底消除同种异体免疫排斥应答,但使供体源移植物的细胞本身同时丧失了抗原提呈的能力,这给受体带来了极大的致瘤性和病毒感染等疾病的风险。On the other hand, in the field of cell therapy, the issue of allogeneic immunocompatibility is still a major problem. In recent years, there have been many reports that by knocking out B2M, CIITA and other genes, the expression of HLA-I and HLA-II cells surface or their own genes is lost, so that cells have immune tolerance or escape T/B cell-specific immune responses, resulting in The immune-compatible universal PSCs have laid an important foundation for the wider application of universal PSC-derived cells, tissues and organs. It has also been reported that cells overexpress CTLA4-Ig and PD-L1 to inhibit allogeneic immune rejection. However, these regimens are either not fully immune compatible, and allogeneic immune rejection still occurs through other means; or they completely eliminate the allogeneic immune rejection response, but the cells of the donor-derived graft lose their antigen-presenting ability at the same time. capacity, which poses a great risk to the receptor for diseases such as tumorigenicity and viral infection.
为此,也有报道,不直接敲除B2M,而敲除HLA-A、HLA-B或一并敲除CIITA的同时,保留HLA-C,并构建12个覆盖人群超过90%的HLA-C免疫配型抗原,以此达到移植物的细胞仍具备一定程度的抗原提呈功能,并且同时能够通过HLA-C抑制NK细胞的固有免疫应答。但这类细胞,一来,HLA-I类抗原提呈的抗原类型缩小了三分之二以上,能够提呈的抗原完整性极大地不可逆的缩小,对于各种肿瘤、病毒以及其他疾病抗原的提呈具有极大的偏向性,仍然保留了相当程度的致瘤和病毒感染等疾病的风险,在CIITA同时敲除的情况下其致病风险更高;二来,12种高频率免疫配型的HLA-C抗原种族差异很大,通过我们核实计算部分地区仅能占到70%的比例,而中国、印度等人口大国目前尚未有权威的大样本量的HLA数据展示,这样制备出来的通用型PSCs使用仍受到巨大的配型空缺考验;第三,这种方法会经历数次反复的基因编辑工作,按每次基因编辑至少两轮单细胞分离培养计,整个过程至少需要六轮以上的单细胞分离培养,这些流程不可避免且极大概率地因多次基因编辑脱靶或染色质不稳定或因大量单细胞传代增殖造成细胞各种不可预测的突变,进而诱发致癌、代谢疾病等各种问题。由此可见,这类免疫兼容方案亦为“过渡时期”的权宜之计,仍有许多问题没有更好的解决。For this reason, it has also been reported that, instead of directly knocking out B2M, HLA-A, HLA-B or CIITA are knocked out together, while retaining HLA-C, and constructing 12 HLA-C immune systems that cover more than 90% of the population. Matching antigens, so that the transplanted cells still have a certain degree of antigen presentation function, and at the same time can inhibit the innate immune response of NK cells through HLA-C. However, the types of antigens presented by HLA-I antigens have been reduced by more than two-thirds, and the integrity of the antigens that can be presented has been greatly and irreversibly reduced. For various tumors, viruses and other disease antigens The presentation is highly biased, and still retains a considerable degree of risk of tumorigenicity and viral infection, and its pathogenic risk is higher when CIITA is knocked out at the same time; secondly, 12 high-frequency immune matching The ethnic differences of HLA-C antigens are very large. Through our verification and calculation, some regions can only account for 70% of the proportion. However, China, India and other populous countries currently do not have authoritative large-scale HLA data display. The use of type PSCs is still subject to the huge matching vacancy test; thirdly, this method will undergo several iterations of gene editing work. Based on at least two rounds of single-cell isolation and culture for each gene editing, the whole process requires at least more than six rounds of single-cell isolation and culture. Cell isolation and culture, these processes are inevitably and highly likely to cause various unpredictable mutations in cells due to multiple off-target gene editing or chromatin instability or due to a large number of single-cell passages and proliferations, and then induce various problems such as carcinogenesis and metabolic diseases . It can be seen that this type of immunocompatibility program is also an expedient measure in the "transition period", and there are still many problems that have not been better resolved.
此外,还有人设计通过诱导自杀基因在供体组织、细胞致病后诱导杀死,这样做的后果将产生严重的组织坏死、细胞因子风暴等不可预知的疾病风险问题,并且这类设计的细胞杀死后将不复存在合适的供体细胞、组织和器官又是一大难题。In addition, some people have designed suicide genes to induce killing after the donor tissue and cells become diseased. The consequences of doing so will cause severe tissue necrosis, cytokine storms and other unpredictable disease risk problems, and such designed cells Another problem is that after killing, there will be no suitable donor cells, tissues and organs.
发明内容SUMMARY OF THE INVENTION
本发明的目的在于提供一种多能干细胞或其衍生物。An object of the present invention is to provide a pluripotent stem cell or a derivative thereof.
本发明的另一目的在于提供上述多能干细胞或其衍生物及其分泌的外泌体在制备抗肿瘤治疗制剂或药物中的应用。Another object of the present invention is to provide the application of the above-mentioned pluripotent stem cells or derivatives thereof and exosomes secreted by them in the preparation of anti-tumor therapeutic preparations or medicines.
本发明的另一目的在于提供一种外泌体。Another object of the present invention is to provide an exosome.
本发明所采取的技术方案是:The technical scheme adopted by the present invention is:
本发明的第一个方面,提供:A first aspect of the present invention provides:
一种多能干细胞或其衍生物,该多能干细胞或其衍生物的基因组导入有CD47抑制因子的表达序列;所述CD47抑制因子为靶向CD47的shRNA和/或shRNA-miR中的至少一种。A pluripotent stem cell or a derivative thereof, the genome of the pluripotent stem cell or its derivative is imported with an expression sequence of a CD47 inhibitor; the CD47 inhibitor is at least one of shRNA and/or shRNA-miR targeting CD47 kind.
发明人发现,在多能干细胞或其衍生物中导入CD47抑制因子的shRNA/shRNA-miR表达序列后,多能干细胞或其衍生物中分泌的外泌体中包含高丰度的靶向CD47的CD47抑制因子的shRNA/shmiRNA以及加工成熟的siRNA,外泌体携带这些抑制因子与靶细胞结合,然后将其释放,从而阻断CD47通路,解除免疫抑制,激活免疫系统,并恢复NK细胞活性,其能够有效清除肿瘤细胞。The inventors found that after the shRNA/shRNA-miR expression sequence of CD47 inhibitor was introduced into pluripotent stem cells or their derivatives, the exosomes secreted from pluripotent stem cells or their derivatives contained high abundance of CD47-targeting mRNAs. shRNA/shmiRNA of CD47 inhibitory factor and processed mature siRNA, exosomes carry these inhibitory factors to bind to target cells, and then release them, thereby blocking the CD47 pathway, releasing immunosuppression, activating the immune system, and restoring NK cell activity, It can effectively remove tumor cells.
进一步地,所述靶向CD47的shRNA和/或shRNA-miR的序列如SEQ ID NO.1~SEQ IDNO.2所示。Further, the sequences of the CD47-targeting shRNA and/or shRNA-miR are shown in SEQ ID NO.1 to SEQ ID NO.2.
本发明的第二个方面,提供:A second aspect of the present invention provides:
一种多能干细胞或其衍生物,该多能干细胞或其衍生物的基因组导入有CD47抑制因子的表达序列;所述CD47抑制因子为靶向CD47的shRNA和/或shRNA-miR中的至少一种。A pluripotent stem cell or a derivative thereof, the genome of the pluripotent stem cell or its derivative is imported with an expression sequence of a CD47 inhibitor; the CD47 inhibitor is at least one of shRNA and/or shRNA-miR targeting CD47 kind.
所述多能干细胞或其衍生物基因组的B2M基因和/或CIITA基因被敲除。The B2M gene and/or the CIITA gene of the genome of the pluripotent stem cell or its derivative is knocked out.
当B2M和CIITA基因被敲除后,其完全消除HLA-I和HLA-II类分子产生的影响,因此,其肿瘤治疗效果最佳。When the B2M and CIITA genes were knocked out, they completely eliminated the effects of HLA-I and HLA-II molecules, so the tumor treatment effect was the best.
本发明的第三个方面,提供:A third aspect of the present invention provides:
一种多能干细胞或其衍生物,该多能干细胞或其衍生物的基因组导入有CD47抑制因子的表达序列;所述CD47抑制因子为靶向CD47的shRNA和/或shRNA-miR中的至少一种。A pluripotent stem cell or a derivative thereof, the genome of the pluripotent stem cell or its derivative is imported with an expression sequence of a CD47 inhibitor; the CD47 inhibitor is at least one of shRNA and/or shRNA-miR targeting CD47 kind.
上述多能干细胞或其衍生物的基因组中导入有第一核酸分子;且,上述多能干细胞或其衍生物中的免疫应答相关基因的3’UTR区域导入有第二核酸分子;上述第一核酸分子编码介导RNA干扰的小核酸分子,上述小核酸分子特异性靶向第二核酸分子的转录产物,且上述小核酸分子不靶向所述多能干细胞或其衍生物的任何其他的mRNA或lncRNA。A first nucleic acid molecule is introduced into the genome of the above-mentioned pluripotent stem cell or its derivative; and a second nucleic acid molecule is introduced into the 3'UTR region of the immune response-related gene in the above-mentioned pluripotent stem cell or its derivative; the above-mentioned first nucleic acid The molecule encodes a small nucleic acid molecule that mediates RNA interference, the small nucleic acid molecule specifically targets the transcription product of the second nucleic acid molecule, and the small nucleic acid molecule does not target any other mRNA or mRNA of the pluripotent stem cell or its derivative. lncRNAs.
本技术方案中,所述第一核酸分子编码的小核酸分子能够与免疫应答相关基因3’UTR区域导入的第二核酸分子的转录产物特异性结合,从而启动RNA干扰程序,将免疫应答相关基因的mRNA降解或沉默,从而阻断免疫应答相关基因的表达,进而使得此类细胞具有免疫兼容的特性,可以消除或者降低同种异体免疫排斥应答反应。而且,该RNA干扰程序只作用于此类被改造过的多能干细胞或其衍生物,因此,当此类细胞或衍生物被移植到受体中时,由第一核酸分子编码的小核酸分子与免疫应答相关基因的3’UTR处导入的第二核酸分子所介导的免疫应答相关基因的RNA干扰,只作用于供体细胞,而不会对受体的细胞的基因组产生干扰。In this technical solution, the small nucleic acid molecule encoded by the first nucleic acid molecule can specifically bind to the transcription product of the second nucleic acid molecule introduced into the 3'UTR region of the immune response-related gene, thereby starting the RNA interference program, and the immune response-related gene The mRNA is degraded or silenced, thereby blocking the expression of immune response-related genes, thereby making such cells immune-compatible, which can eliminate or reduce the allogeneic immune rejection response. Furthermore, the RNA interference program acts only on such engineered pluripotent stem cells or derivatives thereof, so that when such cells or derivatives are transplanted into the recipient, the small nucleic acid molecule encoded by the first nucleic acid molecule The RNA interference of the immune response-related gene mediated by the second nucleic acid molecule introduced at the 3'UTR of the immune response-related gene only acts on the donor cell, and does not interfere with the genome of the recipient's cell.
进一步地,上述小核酸分子包括短干扰核酸、短干扰RNA、双链RNA,优选为miRNA、shRNA、shRNA-miR中的至少一种。Further, the above-mentioned small nucleic acid molecules include short interfering nucleic acid, short interfering RNA, and double-stranded RNA, preferably at least one of miRNA, shRNA, and shRNA-miR.
进一步地,上述多能干细胞或其衍生物来源于人类;上述小核酸分子的序列为不靶向人类任何mRNA或lncRNA的非人类物种的随机序列。Further, the above-mentioned pluripotent stem cells or derivatives thereof are derived from humans; the sequences of the above-mentioned small nucleic acid molecules are random sequences of non-human species that do not target any human mRNA or lncRNA.
上述小核酸分子优选来源于秀丽隐杆线虫。例如:The aforementioned small nucleic acid molecules are preferably derived from Caenorhabditis elegans. E.g:
5’-TTGTACTACACAAAAGTACTG-3’(SEQ ID NO.102)5'-TTGTACTACACAAAAGTACTG-3' (SEQ ID NO. 102)
5’-TCACAACCTCCTAGAAAGAGTAGA-3’(SEQ ID NO.103)。5'-TCACAACCTCCTAGAAAGAGTAGA-3' (SEQ ID NO. 103).
进一步地,上述第二核酸分子包括至少3个重复的小核酸分子序列的反向互补序列,优选为6~10个重复的小核酸分子序列的反向互补序列。Further, the above-mentioned second nucleic acid molecule includes at least 3 repeating reverse complement sequences of small nucleic acid molecule sequences, preferably 6-10 repeating reverse complement sequences of small nucleic acid molecule sequences.
进一步地,所述多能干细胞或其衍生物的基因组中还导入有诱导型基因表达系统,用于调控第一核酸分子的表达。Further, an inducible gene expression system is also introduced into the genome of the pluripotent stem cell or its derivative for regulating the expression of the first nucleic acid molecule.
本技术方案中,诱导型基因表达系统受外源诱导物的调控,通过调整外源诱导物的添加量、持续作用时间、种类来控制诱导型基因表达系统的开启与关闭,从而控制小核酸分子的表达量。In this technical solution, the inducible gene expression system is regulated by the exogenous inducer, and the opening and closing of the inducible gene expression system is controlled by adjusting the addition amount, duration and type of the exogenous inducer, thereby controlling the small nucleic acid molecule expression.
当诱导型基因表达系统开启时,正常表达的小核酸分子和免疫应答相关基因3’UTR区域导入的第二核酸分子的转录产物特异性结合,从而启动RNA干扰程序,将免疫应答相关基因的mRNA降解或沉默,从而阻断免疫应答相关基因的表达。因此,此类细胞或衍生物被移植到受体中时,可以消除或者降低同种异体免疫排斥应答,提高移植物与受体之间的免疫兼容能力。When the inducible gene expression system is turned on, the normally expressed small nucleic acid molecule specifically binds to the transcription product of the second nucleic acid molecule introduced into the 3'UTR region of the immune response-related gene, thereby initiating the RNA interference program and converting the mRNA of the immune response-related gene Degradation or silencing, thereby blocking the expression of immune response-related genes. Therefore, when such cells or derivatives are transplanted into the recipient, the allogeneic immune rejection response can be eliminated or reduced, and the immunocompatibility between the transplant and the recipient can be improved.
当移植物发生病变后,可以通过添加外源诱导物来关闭诱导型基因表达系统,进而关闭小核酸分子的表达,中止小分子核酸对免疫应答相关基因mRNA的干扰作用,恢复免疫应答相关基因的正常表达,进而恢复移植物细胞的抗原提呈能力,使受体能够清除病变的移植物,从而提高了这类多能干细胞或其衍生物的临床安全性,极大地扩展其在临床应用的价值。When the graft becomes diseased, the inducible gene expression system can be turned off by adding an exogenous inducer, thereby turning off the expression of small nucleic acid molecules, stopping the interference of small nucleic acid molecules on the mRNA of immune response-related genes, and restoring the expression of immune response-related genes. Normal expression, thereby restoring the antigen-presenting ability of the graft cells, enabling the recipient to clear the diseased graft, thereby improving the clinical safety of such pluripotent stem cells or their derivatives, and greatly expanding their value in clinical applications .
而且,该RNA干扰程序只作用于此类被改造过的多能干细胞或其衍生物,因此,当此类细胞或衍生物被移植到受体中时,由第一核酸分子编码的小核酸分子与免疫应答相关基因的3’UTR处导入的第二核酸分子所介导的免疫应答相关基因的RNA干扰,只作用于供体细胞,而不会对受体的细胞的基因组产生干扰。Furthermore, the RNA interference program acts only on such engineered pluripotent stem cells or derivatives thereof, so that when such cells or derivatives are transplanted into the recipient, the small nucleic acid molecule encoded by the first nucleic acid molecule The RNA interference of the immune response-related gene mediated by the second nucleic acid molecule introduced at the 3'UTR of the immune response-related gene only acts on the donor cell, and does not interfere with the genome of the recipient's cell.
本发明的第四个方面,提供:A fourth aspect of the present invention provides:
一种多能干细胞或其衍生物,该多能干细胞或其衍生物的基因组导入有CD47抑制因子的表达序列;所述CD47抑制因子为靶向CD47的shRNA和/或shRNA-miR中的至少一种。A pluripotent stem cell or a derivative thereof, the genome of the pluripotent stem cell or its derivative is imported with an expression sequence of a CD47 inhibitor; the CD47 inhibitor is at least one of shRNA and/or shRNA-miR targeting CD47 kind.
所述多能干细胞或其衍生物的基因组中还导入至少一种免疫兼容分子的表达序列,所述免疫兼容分子用于调控多能干细胞细胞或其衍生物中与免疫应答相关的基因的表达。An expression sequence of at least one immune-compatible molecule is also introduced into the genome of the pluripotent stem cell or its derivative, and the immune-compatible molecule is used to regulate the expression of an immune response-related gene in the pluripotent stem cell or its derivative.
本技术方案中,免疫兼容分子可以调控多能干细胞或其衍生物中与免疫应答相关的基因的表达,因而此类多能干细胞或其衍生物的免疫源性低,将其移植到受体中时,可以消除或者降低同种异体免疫排斥应答,提高移植物与受体之间的免疫兼容能力。移植物可以在受体内源源不断地表达靶向CD47的shRNA/shRNA-miR,这些抑制因子被外泌体包裹后,外泌体携带其与靶细胞结合,进而将其释放,从而阻断CD47通路,解除免疫抑制,激活免疫系统,并恢复NK细胞活性,其能够有效清除肿瘤细胞。In this technical solution, the immune-compatible molecules can regulate the expression of genes related to immune response in pluripotent stem cells or their derivatives, so such pluripotent stem cells or their derivatives have low immunogenicity, and they are transplanted into recipients. It can eliminate or reduce the allogeneic immune rejection response and improve the immune compatibility between the graft and the recipient. The graft can continuously express shRNA/shRNA-miR targeting CD47 in the recipient. After these inhibitors are encapsulated by exosomes, the exosomes carry them to bind to target cells and release them, thereby blocking CD47 pathway, relieve immunosuppression, activate the immune system, and restore the activity of NK cells, which can effectively eliminate tumor cells.
进一步地,所述多能干细胞或其衍生物的基因组中还导入有诱导型基因表达系统,用于调控免疫兼容分子的表达。Further, an inducible gene expression system is also introduced into the genome of the pluripotent stem cells or their derivatives for regulating the expression of immune compatible molecules.
本技术方案中,诱导型基因表达系统受外源诱导物的调控,通过调整外源诱导物的添加量、持续作用时间、种类来控制诱导型基因表达系统的开启与关闭,进一步控制免疫兼容分子表达序列的表达量,从而实现多能干细胞或其衍生物免疫兼容的可逆性调控。当免疫兼容分子正常表达时,多能干细胞或其衍生物中与免疫应答相关的基因的表达被抑制或过表达,从而使得进行同种异体细胞治疗时,可以消除或者降低同种异体免疫排斥应答,提高供体细胞与受体之间的免疫兼容能力。而当供体细胞发生病变时,可通过外源诱导物诱导关闭免疫兼容分子的表达,从而可逆地使供体细胞表面重新表达HLAⅠ类分子,恢复供体细胞的抗原提呈能力,进而受体免疫系统通过识别不匹配的HLAⅠ类分子或通过交叉HLAⅠ类分子抗原提呈(经典非兼容HLA之间的抗原提呈/识别)突变的分子,使受体能够清除病变的细胞,从而提高了这类通用型多能干细胞或其衍生物的临床安全性,极大地扩展其在临床应用的价值。In this technical solution, the inducible gene expression system is regulated by the exogenous inducer, and the opening and closing of the inducible gene expression system is controlled by adjusting the addition amount, duration and type of the exogenous inducer, and the immune compatible molecules are further controlled. The expression level of the expressed sequence can be reversibly regulated by the immunocompatibility of pluripotent stem cells or their derivatives. When immune-compatible molecules are normally expressed, the expression of genes related to immune response in pluripotent stem cells or their derivatives is inhibited or overexpressed, so that allogeneic cell therapy can eliminate or reduce the allogeneic immune rejection response. , to improve the immune compatibility between donor cells and recipients. When the donor cell becomes diseased, the expression of immune-compatible molecules can be induced to shut down by exogenous inducers, thereby reversibly re-expressing HLA class I molecules on the surface of the donor cell, restoring the antigen-presenting ability of the donor cell, and then accepting the receptor. The immune system increases this risk by recognizing mismatched HLA class I molecules or mutated molecules through cross-HLA class I antigen presentation (antigen presentation/recognition between classically incompatible HLAs), enabling receptors to clear diseased cells. The clinical safety of general-purpose pluripotent stem cells or their derivatives greatly expands their value in clinical applications.
关于本发明的第三个和第四个方面,进一步地,所述与免疫应答相关的基因包括:Regarding the third and fourth aspects of the present invention, further, the genes related to immune response include:
(1)主要组织相容性复合体基因,包括HLA-A、HLA-B、HLA-C、HLA-DRA、HLA-DRB1、HLA-DRB3、HLA-DRB4、HLA-DRB5、HLA-DQA1、HLA-DQB1、HLA-DPA1和HLA-DPB1中的至少一种;(1) Major histocompatibility complex genes, including HLA-A, HLA-B, HLA-C, HLA-DRA, HLA-DRB1, HLA-DRB3, HLA-DRB4, HLA-DRB5, HLA-DQA1, HLA - at least one of DQB1, HLA-DPAl and HLA-DPB1;
(2)主要组织相容性复合体相关基因,包括B2M和CIITA中的至少一种。(2) Major histocompatibility complex-related genes, including at least one of B2M and CIITA.
更进一步地,所述免疫兼容分子包括以下的至少一种:Further, the immunocompatible molecule includes at least one of the following:
(1)免疫耐受相关基因,包括HLA-G;(1) Immune tolerance-related genes, including HLA-G;
(2)HLA-C类分子,包括人群中比例合计超过90%的HLA-C复等位基因,或者超过90%的HLA-C复等位基因与B2M构成的融合蛋白基因;(2) HLA-C class molecules, including HLA-C multiple alleles with a proportion of more than 90% in the population, or fusion protein genes composed of more than 90% of HLA-C multiple alleles and B2M;
(3)靶向主要组织相容性复合体基因的shRNA和/或shRNA-miR,该主要组织相容性复合体基因包括HLA-A、HLA-B、HLA-C、HLA-DRA、HLA-DRB1、HLA-DRB3、HLA-DRB4、HLA-DRB5、HLA-DQA1、HLA-DQB1、HLA-DPA1和HLA-DPB1中的至少一种;(3) shRNA and/or shRNA-miR targeting major histocompatibility complex genes including HLA-A, HLA-B, HLA-C, HLA-DRA, HLA- at least one of DRB1, HLA-DRB3, HLA-DRB4, HLA-DRB5, HLA-DQA1, HLA-DQB1, HLA-DPA1 and HLA-DPB1;
(4)靶向主要组织相容性复合体相关基因的shRNA和/或shRNA-miR,该主要组织相容性复合体相关基因包括B2M和CIITA中的至少一种。(4) shRNA and/or shRNA-miR targeting major histocompatibility complex-related genes, the major histocompatibility complex-related genes including at least one of B2M and CIITA.
更进一步地,上述靶向B2M的shRNA和/或shRNA-miR的靶序列选自SEQ ID NO.10~SEQ ID NO.12中的一种;Further, the target sequence of the above-mentioned B2M-targeting shRNA and/or shRNA-miR is selected from one of SEQ ID NO.10 to SEQ ID NO.12;
靶向CIITA的shRNA和/或shRNA-miR的靶序列选自SEQ ID NO.13~SEQ ID NO.15中的一种;The target sequence of shRNA and/or shRNA-miR targeting CIITA is selected from one of SEQ ID NO.13 to SEQ ID NO.15;
靶向HLA-A的shRNA和/或shRNA-miR的靶序列选自SEQ ID NO.16~SEQ ID NO.18中的一种;The target sequence of shRNA and/or shRNA-miR targeting HLA-A is selected from one of SEQ ID NO.16 to SEQ ID NO.18;
靶向HLA-B的shRNA和/或shRNA-miR的靶序列选自SEQ ID NO.19~SEQ ID NO.21中的一种;The target sequence of shRNA and/or shRNA-miR targeting HLA-B is selected from one of SEQ ID NO.19 to SEQ ID NO.21;
靶向HLA-C的shRNA和/或shRNA-miR的靶序列选自SEQ ID NO.22~SEQ ID NO.24中的一种;The target sequence of shRNA and/or shRNA-miR targeting HLA-C is selected from one of SEQ ID NO.22-SEQ ID NO.24;
靶向HLA-DRA的shRNA和/或shRNA-miR的靶序列选自SEQ ID NO.25~SEQ IDNO.27中的一种;The target sequence of shRNA and/or shRNA-miR targeting HLA-DRA is selected from one of SEQ ID NO.25 to SEQ ID NO.27;
靶向HLA-DRB1的shRNA和/或shRNA-miR的靶序列选自SEQ ID NO.28~SEQ IDNO.30中的一种;The target sequence of shRNA and/or shRNA-miR targeting HLA-DRB1 is selected from one of SEQ ID NO.28 to SEQ ID NO.30;
靶向HLA-DRB3的shRNA和/或shRNA-miR的靶序列选自SEQ ID NO.31~SEQ IDNO.32中的一种;The target sequence of shRNA and/or shRNA-miR targeting HLA-DRB3 is selected from one of SEQ ID NO.31 to SEQ ID NO.32;
靶向HLA-DRB4的shRNA和/或shRNA-miR的靶序列选自SEQ ID NO.33~SEQ IDNO.35中的一种;The target sequence of shRNA and/or shRNA-miR targeting HLA-DRB4 is selected from one of SEQ ID NO.33 to SEQ ID NO.35;
靶向HLA-DRB5的shRNA和/或shRNA-miR的靶序列选自SEQ ID NO.36~SEQ IDNO.38中的一种;The target sequence of the shRNA and/or shRNA-miR targeting HLA-DRB5 is selected from one of SEQ ID NO.36 to SEQ ID NO.38;
靶向HLA-DQA1的shRNA和/或shRNA-miR的靶序列选自SEQ ID NO.39~SEQ IDNO.41中的一种;The target sequence of shRNA and/or shRNA-miR targeting HLA-DQA1 is selected from one of SEQ ID NO.39 to SEQ ID NO.41;
靶向HLA-DQB1的shRNA和/或shRNA-miR的靶序列选自SEQ ID NO.42~SEQ IDNO.44中的一种;The target sequence of shRNA and/or shRNA-miR targeting HLA-DQB1 is selected from one of SEQ ID NO.42 to SEQ ID NO.44;
靶向HLA-DPA1的shRNA和/或shRNA-miR的靶序列选自SEQ ID NO.45~SEQ IDNO.47中的一种;The target sequence of shRNA and/or shRNA-miR targeting HLA-DPA1 is selected from one of SEQ ID NO.45-SEQ ID NO.47;
靶向HLA-DPB1的shRNA和/或shRNA-miR的靶序列选自SEQ ID NO.48~SEQ IDNO.51中的一种。The target sequence of the shRNA and/or shRNA-miR targeting HLA-DPB1 is selected from one of SEQ ID NO.48 to SEQ ID NO.51.
关于本发明的第一个至第四个方面,更进一步地,所述多能干细胞或其衍生物的基因组中还导入shRNA和/或miRNA加工复合体相关基因和/或抗干扰素效应分子,其中:shRNA和/或miRNA加工复合体相关基因包括Drosha、Ago1、Ago2、Dicer1、Exportin-5、TRBP(TARBP2)、PACT(PRKRA)、DGCR8中的至少一种;上述抗干扰素效应分子为靶向PKR、2-5As、IRF-3和IRF-7中的至少一种的shRNA和/或shRNA-miR。Regarding the first to fourth aspects of the present invention, further, shRNA and/or miRNA processing complex-related genes and/or anti-interferon effector molecules are introduced into the genome of the pluripotent stem cells or their derivatives, Wherein: shRNA and/or miRNA processing complex-related genes include at least one of Drosha, Ago1, Ago2, Dicer1, Exportin-5, TRBP (TARBP2), PACT (PRKRA), and DGCR8; the above-mentioned anti-interferon effector molecule is the target shRNA and/or shRNA-miR directed to at least one of PKR, 2-5As, IRF-3, and IRF-7.
更进一步地,上述靶向PKR的shRNA和/或shRNA-miR的靶序列选自SEQ ID NO.51~SEQ ID NO.53中的一种;Further, the target sequence of the above-mentioned PKR-targeting shRNA and/or shRNA-miR is selected from one of SEQ ID NO.51 to SEQ ID NO.53;
靶向2-5As的shRNA和/或shRNA-miR的靶序列选自SEQ ID NO.54~SEQ ID NO.62中的一种;The target sequence of shRNA and/or shRNA-miR targeting 2-5As is selected from one of SEQ ID NO.54-SEQ ID NO.62;
靶向IRF-3的shRNA和/或shRNA-miR的靶序列选自SEQ ID NO.63~SEQ ID NO.65中的一种;The target sequence of shRNA and/or shRNA-miR targeting IRF-3 is selected from one of SEQ ID NO.63-SEQ ID NO.65;
靶向IRF-7的shRNA和/或shRNA-miR的靶序列选自SEQ ID NO.66~SEQ ID NO.68中的一种。The target sequence of shRNA targeting IRF-7 and/or shRNA-miR is selected from one of SEQ ID NO.66-SEQ ID NO.68.
关于本发明的第三个和第四个方面,所述诱导型基因表达系统包括Tet-Off系统、二聚体诱导表达系统中的至少一种。Regarding the third and fourth aspects of the present invention, the inducible gene expression system includes at least one of the Tet-Off system and the dimer inducible expression system.
当采用的诱导型基因表达系统为Tet-Off系统时,可通过添加外源诱导物四环素(Doxycycline,Dox)来控制细胞或其衍生物中小核酸分子的表达。当所述的多能干细胞或其衍生物被移植到供体中后,甚至可以通过调整Dox的添加量,来逐步降低小核酸分子的表达量,使得细胞能够逐步地表达低浓度的免疫相关基因来刺激供体,从而使得供体对移植的细胞或其衍生物逐步产生耐受,最终达到稳定的耐受。通常情况下,Dox的添加量为0-100uM。When the inducible gene expression system used is the Tet-Off system, the expression of small nucleic acid molecules in cells or derivatives thereof can be controlled by adding an exogenous inducer tetracycline (Doxycycline, Dox). When the pluripotent stem cells or their derivatives are transplanted into the donor, the expression of small nucleic acid molecules can even be gradually reduced by adjusting the amount of Dox added, so that the cells can gradually express low concentrations of immune-related genes To stimulate the donor, so that the donor gradually develops tolerance to the transplanted cells or their derivatives, and finally achieves a stable tolerance. Typically, Dox is added in an amount of 0-100uM.
关于本发明的第一个至第四个方面,更进一步地,上述多能干细胞或其衍生物的基因组还导入外泌体加工合成基因,所述外泌体加工合成基因包括STEAP3、Syndevan-4、L-天冬氨酸氧化酶片段、CD63-L7Ae和Cx43S368A中的至少一种。Regarding the first to fourth aspects of the present invention, further, the genome of the above-mentioned pluripotent stem cells or their derivatives is further introduced into exosome processing and synthesis genes, and the exosome processing and synthesis genes include STEAP3, Syndevan-4 , at least one of L-aspartate oxidase fragment, CD63-L7Ae and Cx43S368A.
在干细胞或其衍生物的基因组中导入外泌体加工合成基因可以提高外泌体的分泌效率,及其对shRNA、shRNA-miR和加工成熟的siRNA的包裹效率。The introduction of exosome processing synthetic genes into the genome of stem cells or their derivatives can improve the secretion efficiency of exosomes and their encapsulation efficiency for shRNA, shRNA-miR and processed siRNA.
二聚体诱导表达系统具体指:运用二聚化的诱导剂或者二聚体在无活性的融合蛋白上重组有活性的转录因子。最常用的体系是将天然产物雷帕霉素(rapamydn)或者无生物活性的类似物作为二聚化的药物。雷帕霉素(或类似物)同胞质蛋白FKBP12(FKBP与FK506结合的蛋白)和一种大的丝-苏氨酸蛋白激酶,称为FRAP(FRBP-雷帕霉素相关蛋白,即mTOR(哺乳动物的雷帕霉素靶点))有高度亲和性,又与这两种蛋白质相结合的功能,因此作为异源性二聚体将这两种蛋白质聚到一起。为调控靶基因转录,将DNA结合区域融合到一个或多个FKBP结构域,将转录抑制域融合到FRAP的93位氨基酸部位,称为FRB,这样足以结合FKBP-雷帕霉素复合物。只有在雷帕霉素存在的情况下,这两种融合蛋白才能发生二聚化。因而抑制具有与DNA结合区域相结合的位点的基因进行转录。The dimer-inducible expression system specifically refers to: using a dimerization inducer or dimer to reconstitute an active transcription factor on an inactive fusion protein. The most commonly used system uses the natural product rapamydn or a biologically inactive analog as the dimerized drug. Rapamycin (or analog) homoplasmic protein FKBP12 (the protein that FKBP binds to FK506) and a large serine-threonine protein kinase called FRAP (FRBP-rapamycin-associated protein, or mTOR ( The mammalian target of rapamycin)) has a high affinity and has the function of combining with these two proteins, so the two proteins are brought together as a heterodimer. To regulate target gene transcription, a DNA binding domain is fused to one or more FKBP domains, and a transcriptional repression domain is fused to amino acid 93 of FRAP, called FRB, which is sufficient to bind the FKBP-rapamycin complex. The two fusion proteins dimerized only in the presence of rapamycin. Transcription of genes with sites that bind to the DNA binding region is thus inhibited.
关于本发明的第一个至第四个方面,更进一步地,所述靶向CD47的shRNA和/或shRNA-miR、主要组织相容性复合体基因、主要组织相容性复合体相关基因、抗干扰素效应分子的表达框架如下:Regarding the first to fourth aspects of the present invention, further, the CD47-targeting shRNA and/or shRNA-miR, major histocompatibility complex gene, major histocompatibility complex-related gene, The expression framework of the anti-interferon effector molecule is as follows:
所述shRNA表达框架:自5’到3’依次包括shRNA序列、茎环序列、shRNA序列的反向互补序列、Poly T;Described shRNA expression frame: from 5 ' to 3 ' sequentially comprises shRNA sequence, stem-loop sequence, the reverse complement of shRNA sequence, Poly T;
其中,所述shRNA序列、茎环序列与所述shRNA序列的反向互补序列形成发夹结构;Poly T为RNA聚合酶III的转录终止子;Wherein, the shRNA sequence, the stem-loop sequence and the reverse complementary sequence of the shRNA sequence form a hairpin structure; Poly T is the transcription terminator of RNA polymerase III;
shRNA-miR表达框架:使用shRNA-miR序列替换所述shRNA表达框架中的shRNA靶序列得到。shRNA-miR expression framework: obtained by replacing the shRNA target sequence in the shRNA expression framework with the shRNA-miR sequence.
关于本发明的第一个至第四个方面,更进一步地,所述第一核酸分子、CD47抑制因子的表达序列、免疫兼容分子的表达序列、shRNA和/或miRNA加工复合体相关基因、抗干扰素效应分子、诱导型基因表达系统、外泌体加工合成基因的导入采用病毒载体干扰、非病毒载体转染或基因编辑的方法,所述基因编辑的方法包括基因敲入。Regarding the first to fourth aspects of the present invention, further, the first nucleic acid molecule, the expression sequence of the CD47 inhibitor, the expression sequence of the immune compatible molecule, the shRNA and/or miRNA processing complex-related gene, the anti- The introduction of interferon effector molecules, inducible gene expression systems, and exosome processing synthetic genes adopts methods of viral vector interference, non-viral vector transfection or gene editing, and the gene editing methods include gene knock-in.
关于本发明的第一个至第四个方面,更进一步地,所述CD47抑制因子的表达序列、外泌体加工合成基因、免疫兼容分子的表达序列、shRNA和/或miRNA加工复合体相关基因、抗干扰素效应分子、诱导型基因表达系统的导入位点为基因组安全位点。优选为AAVS1安全位点、eGSH安全位点、H11安全位点中的一种或多种。Regarding the first to fourth aspects of the present invention, further, the expression sequence of the CD47 inhibitor, the exosome processing synthetic gene, the expression sequence of the immune compatible molecule, the shRNA and/or the miRNA processing complex related gene The introduction site of the anti-interferon effector molecule and the inducible gene expression system is the genome safety site. It is preferably one or more of AAVS1 safety site, eGSH safety site and H11 safety site.
关于本发明的第一个至第四个方面,更进一步地,所述多能干细胞包括胚胎干细胞、胚胎生殖细胞、胚胎癌细胞、或者诱导多能干细胞;所述多能干细胞衍生物包括多能干细胞所分化的成体干细胞、各胚层细胞或组织、器官;所述成体干细胞包括间充质干细胞或者神经干细胞。Regarding the first to fourth aspects of the present invention, further, the pluripotent stem cells include embryonic stem cells, embryonic germ cells, embryonic cancer cells, or induced pluripotent stem cells; the pluripotent stem cell derivatives include pluripotent stem cells Adult stem cells, germ layer cells or tissues, organs differentiated by stem cells; the adult stem cells include mesenchymal stem cells or neural stem cells.
本发明的第五个方面,提供:A fifth aspect of the present invention provides:
上述多能干细胞或其衍生物及其分泌的外泌体在制备抗肿瘤治疗制剂或药物中的应用。The application of the above-mentioned pluripotent stem cells or derivatives thereof and exosomes secreted in the preparation of anti-tumor therapeutic preparations or medicines.
进一步地,上述多能干细胞或其衍生物及其分泌的外泌体在制备CD47高表达肿瘤治疗制剂或药物中的应用。Further, the application of the above-mentioned pluripotent stem cells or derivatives thereof and the exosomes secreted thereof in the preparation of CD47 high-expressing tumor therapeutic preparations or drugs.
本发明的第六个方面,提供:A sixth aspect of the present invention provides:
一种外泌体,由上述的多能干细胞或其衍生物分泌得到。An exosome is secreted from the above-mentioned pluripotent stem cells or derivatives thereof.
本发明的有益效果是:The beneficial effects of the present invention are:
1.本发明第一个方面所提供的多能干细胞或其衍生物,可应用于自体细胞诱导的iPSCs或者MSCs低免疫源性细胞。其通过在自体细胞诱导的iPSCs基因组中导入靶向CD47的CD47抑制因子的shRNA/shRNA-miR的表达序列后,iPSCs能够大量表达靶向CD47的shRNA/shRNA-miR,并被细胞分泌的外泌体包裹。外泌体携带这些抑制因子与靶细胞结合,进而将其释放,从而阻断CD47通路,解除免疫抑制,激活免疫系统,并恢复NK细胞活性,使其能够有效清除肿瘤细胞。1. The pluripotent stem cells or derivatives thereof provided in the first aspect of the present invention can be applied to iPSCs or MSCs low-immunogenic cells induced by autologous cells. After introducing the expression sequence of shRNA/shRNA-miR targeting CD47-targeting CD47 inhibitor into the genome of iPSCs induced by autologous cells, iPSCs can express a large amount of shRNA/shRNA-miR targeting CD47, which is secreted by cells. body wrap. Exosomes carry these inhibitory factors to bind to target cells and release them, thereby blocking the CD47 pathway, releasing immunosuppression, activating the immune system, and restoring NK cell activity, enabling it to effectively remove tumor cells.
2.本发明第二个方面所提供的多能干细胞或其衍生物,还可以应用于同种异体细胞治疗。由于本发明中的多能干细胞或其衍生物中的B2M、CIITA基因被敲除,因而此类多能干细胞或其衍生物的免疫源性低,当其被移植到受体中时,由第一核酸分子编码的小核酸分子与第二核酸分子的转录产物所介导的针对免疫应答相关基因的RNA干扰,只作用于供体细胞,而不会对受体的细胞的基因组产生干扰。提高移植物与受体之间的免疫兼容能力。移植物可以在受体内源源不断地表达靶向CD47的shRNA/shRNA-miR,这些抑制因子被外泌体包裹后,外泌体携带其与靶细胞结合,进而将其释放,从而阻断CD47通路,解除免疫抑制,激活免疫系统,并恢复NK细胞活性,使其能够有效清除肿瘤细胞。2. The pluripotent stem cells or derivatives thereof provided in the second aspect of the present invention can also be applied to allogeneic cell therapy. Since the B2M and CIITA genes in the pluripotent stem cells or their derivatives of the present invention are knocked out, the immunogenicity of such pluripotent stem cells or their derivatives is low. The RNA interference mediated by the transcription product of the small nucleic acid molecule encoded by one nucleic acid molecule and the transcription product of the second nucleic acid molecule against immune response-related genes only acts on the donor cells, and does not interfere with the genome of the recipient cells. Improve immunocompatibility between graft and recipient. The graft can continuously express shRNA/shRNA-miR targeting CD47 in the recipient. After these inhibitors are encapsulated by exosomes, the exosomes carry them to bind to target cells and release them, thereby blocking CD47 pathway, relieve immunosuppression, activate the immune system, and restore NK cell activity, enabling it to effectively remove tumor cells.
3.本发明第三个方面所提供的多能干细胞或其衍生物具有免疫兼容的特性,可以消除或者降低同种异体免疫排斥应答反应。而且,该多能干细胞或其衍生物的RNA干扰程序只作用于此类被改造过的多能干细胞或其衍生物。因此,当此类细胞或衍生物被移植到受体中时,由第一核酸分子编码的小核酸分子与第二核酸分子的转录产物所介导的针对免疫应答相关基因的RNA干扰,只作用于供体细胞,而不会对受体细胞的基因组产生干扰。3. The pluripotent stem cells or derivatives thereof provided in the third aspect of the present invention have the characteristic of immune compatibility, and can eliminate or reduce the allogeneic immune rejection response. Moreover, the RNA interference program of the pluripotent stem cells or derivatives thereof only acts on such engineered pluripotent stem cells or derivatives thereof. Therefore, when such cells or derivatives are transplanted into recipients, the RNA interference mediated by the transcription products of the small nucleic acid molecule encoded by the first nucleic acid molecule and the transcription product of the second nucleic acid molecule against genes involved in the immune response only affects the in the donor cell without interfering with the genome of the recipient cell.
更进一步地,进一步地,所述多能干细胞或其衍生物的基因组中还导入有诱导型基因表达系统,用于调控第一核酸分子的表达,从而实现此类多能干细胞或其衍生物的免疫兼容可逆。Further, further, an inducible gene expression system is also introduced into the genome of the pluripotent stem cells or their derivatives for regulating the expression of the first nucleic acid molecule, thereby realizing the expression of such pluripotent stem cells or their derivatives. Immunocompatibilities are reversible.
4.本发明第四个方面所提供的多能干细胞或其衍生物,其基因组中导入了免疫兼容分子表达序列,因而此类多能干细胞或其衍生物的免疫源性低,当其被移植到受体中时,由第一核酸分子编码的小核酸分子与第二核酸分子的转录产物所介导的针对免疫应答相关基因的RNA干扰,只作用于供体细胞,而不会对受体的细胞的基因组产生干扰。提高移植物与受体之间的免疫兼容能力。移植物可以在受体内源源不断地表达靶向CD47的shRNA/shRNA-miR,这些抑制因子被外泌体包裹后,外泌体携带其与靶细胞结合,进而将其释放,从而阻断CD47通路,解除免疫抑制,激活免疫系统,并恢复NK细胞活性,使其能够有效清除肿瘤细胞。4. The pluripotent stem cells or derivatives thereof provided in the fourth aspect of the present invention have an immunocompatibility molecule expression sequence introduced into their genome, so such pluripotent stem cells or their derivatives have low immunogenicity, and when they are transplanted When it reaches the recipient, the RNA interference mediated by the transcription product of the small nucleic acid molecule encoded by the first nucleic acid molecule and the transcription product of the second nucleic acid molecule against immune response-related genes only acts on the donor cells and does not affect the recipient. interfere with the genome of the cell. Improve immunocompatibility between graft and recipient. The graft can continuously express shRNA/shRNA-miR targeting CD47 in the recipient. After these inhibitors are encapsulated by exosomes, the exosomes carry them to bind to target cells and release them, thereby blocking CD47 pathway, relieve immunosuppression, activate the immune system, and restore NK cell activity, enabling it to effectively remove tumor cells.
更进一步地,本发明第四个方面所提供的多能干细胞或其衍生物的基因组中还导入了诱导型基因表达系统,诱导型基因表达系统可以调控免疫兼容分子的表达,而诱导型基因表达系统受外源诱导物的调控,通过调整外源诱导物的添加量、持续作用时间、种类来控制诱导型基因表达系统的开启与关闭,进一步控制免疫兼容分子表达序列的表达量,从而实现多能干细胞或其衍生物免疫兼容的可逆性调控。当诱导型基因表达系统开启时,正常表达的小分子核酸和免疫应答相关基因3’UTR区域导入的第二核酸分子的转录产物特异性结合,从而启动RNA干扰程序,将免疫应答相关基因的mRNA降解或沉默,从而阻断免疫应答相关基因的表达。因此,此类细胞或衍生物被移植到受体中时,可以消除或者降低同种异体免疫排斥应答,提高移植物与受体之间的免疫兼容能力。当移植物发生病变后,可以通过添加外源诱导物来关闭诱导型基因表达系统,从而停止小核酸分子的表达及小分子核酸对免疫应答相关基因mRNA的干扰作用,恢复免疫相关基因的正常表达,进而恢复移植物细胞的抗原提呈能力,使受体能够清除病变的移植物,从而提高了这类多能干细胞或其衍生物的临床安全性,极大地扩展其在临床应用的价值。Furthermore, the genome of the pluripotent stem cells or their derivatives provided by the fourth aspect of the present invention also introduces an inducible gene expression system, and the inducible gene expression system can regulate the expression of immune-compatible molecules, while the inducible gene expression system can regulate the expression of immune-compatible molecules. The system is regulated by exogenous inducers. By adjusting the addition amount, duration, and type of exogenous inducers, the inducible gene expression system is controlled on and off, and the expression of immune-compatible molecular expression sequences is further controlled, so as to achieve multiple Reversible regulation of immunocompatibility in competent stem cells or their derivatives. When the inducible gene expression system is turned on, the normally expressed small molecule nucleic acid specifically binds to the transcription product of the second nucleic acid molecule introduced into the 3'UTR region of the immune response-related gene, thereby initiating the RNA interference program and converting the mRNA of the immune response-related gene Degradation or silencing, thereby blocking the expression of immune response-related genes. Therefore, when such cells or derivatives are transplanted into the recipient, the allogeneic immune rejection response can be eliminated or reduced, and the immunocompatibility between the transplant and the recipient can be improved. When the graft becomes diseased, the inducible gene expression system can be turned off by adding an exogenous inducer, thereby stopping the expression of small nucleic acid molecules and the interference of small nucleic acid molecules on the mRNA of immune response-related genes, and restoring the normal expression of immune-related genes. , thereby restoring the antigen-presenting ability of the graft cells, enabling the recipient to clear the diseased graft, thereby improving the clinical safety of such pluripotent stem cells or their derivatives, and greatly expanding their value in clinical applications.
5.本发明中的多能干细胞或其衍生物还可以通过调整外源诱导物的添加量、持续作用时间,来逐步降低多能干细胞或其衍生物中小核酸分子的表达量,使得供体细胞能够逐步地表达低浓度的免疫相关基因来刺激供体,从而使得供体对移植的细胞或其衍生物逐步产生耐受,最终达到稳定的耐受。此时,即使移植物细胞表面表达不匹配的HLAⅠ类分子,也能够被受体免疫系统兼容。5. The pluripotent stem cells or their derivatives in the present invention can also gradually reduce the expression of small nucleic acid molecules in the pluripotent stem cells or their derivatives by adjusting the amount of exogenous inducers and the duration of action, so that the donor cells It can gradually express low concentrations of immune-related genes to stimulate the donor, so that the donor gradually develops tolerance to the transplanted cells or their derivatives, and finally achieves a stable tolerance. At this time, even if the graft cell surface expresses mismatched HLA class I molecules, it can be compatible with the recipient immune system.
附图说明Description of drawings
图1为Cas9(D10A)的质粒图谱。Figure 1 shows the plasmid map of Cas9 (D10A).
图2为sgRNA Clone AAVS1-1的质粒图谱。Figure 2 is the plasmid map of sgRNA Clone AAVS1-1.
图3为sgRNA Clone AAVS1-2的质粒图谱。Figure 3 is the plasmid map of sgRNA Clone AAVS1-2.
图4为sgRNA clone B2M-1的质粒图谱。Figure 4 is the plasmid map of sgRNA clone B2M-1.
图5为sgRNA clone B2M-2的质粒图谱。Figure 5 is the plasmid map of sgRNA clone B2M-2.
图6为sgRNA clone B2M-3的质粒图谱。Figure 6 is the plasmid map of sgRNA clone B2M-3.
图7为sgRNA clone B2M-4的质粒图谱。Figure 7 is the plasmid map of sgRNA clone B2M-4.
图8为sgRNA clone CIITA-1的质粒图谱。Figure 8 is the plasmid map of sgRNA clone CIITA-1.
图9为sgRNA clone CIITA-2的质粒图谱。Figure 9 is the plasmid map of sgRNA clone CIITA-2.
图10为sgRNA clone CIITA-3的质粒图谱。Figure 10 is the plasmid map of sgRNA clone CIITA-3.
图11为sgRNA clone CIITA-4的质粒图谱。Figure 11 is the plasmid map of sgRNA clone CIITA-4.
图12为AAVS1 KI Vector(shRNA,组成型)的质粒图谱。Figure 12 is a plasmid map of AAVS1 KI Vector (shRNA, constitutive).
图13为AAVS1 KI Vector(shRNA,诱导型)的质粒图谱。Figure 13 is a plasmid map of AAVS1 KI Vector (shRNA, inducible).
图14为AAVS1 KI Vector(shRNA-miR,组成型)的质粒图谱。Figure 14 is a plasmid map of AAVS1 KI Vector (shRNA-miR, constitutive).
图15为AAVS1 KI Vector(shRNA-miR,诱导型)的质粒图谱。Figure 15 is a plasmid map of AAVS1 KI Vector (shRNA-miR, inducible).
图16为B2M KI Vector的质粒图谱。Figure 16 is a plasmid map of B2M KI Vector.
图17为CIITA KI Vector的质粒图谱。Figure 17 is a plasmid map of CIITA KI Vector.
具体实施方式Detailed ways
为了使本发明的发明目的、技术方案及其技术效果更加清晰,以下结合具体实施方式,对本发明进行进一步详细说明。应当理解的是,本说明书中描述的具体实施方式仅仅是为了解释本发明,并非为了限定本发明。In order to make the invention purpose, technical solutions and technical effects of the present invention clearer, the present invention will be further described in detail below with reference to the specific embodiments. It should be understood that the specific embodiments described in this specification are only for explaining the present invention, rather than for limiting the present invention.
所使用的实验材料和试剂,若无特别说明,均为常规可从商业途径所获得的耗材和试剂。The experimental materials and reagents used, unless otherwise specified, are conventional consumables and reagents that can be obtained from commercial sources.
实验材料:Experimental Materials:
1.CD47抑制因子的选择1. Selection of CD47 Inhibitors
CD47抑制因子:靶向CD47的shRNA或shRNA-miR。CD47 inhibitor: shRNA or shRNA-miR targeting CD47.
本发明实施例中使用的靶向CD47的shRNA或shRNA-miR序列的序列如表1所示。The sequences of the CD47-targeting shRNA or shRNA-miR sequences used in the examples of the present invention are shown in Table 1.
表1 靶向CD47的shRNA或shRNA-miR序列的序列Table 1 Sequences of shRNA or shRNA-miR sequences targeting CD47
2.小核酸分子的构建2. Construction of small nucleic acid molecules
小核酸分子的序列为不靶向人类任何mRNA或lncRNA的非人类物种的随机序列,优选来源于秀丽隐杆线虫。The sequence of the small nucleic acid molecule is a random sequence of a non-human species that does not target any mRNA or lncRNA in humans, preferably derived from Caenorhabditis elegans.
本实施例所采用的小核酸分子的序列为:The sequence of the small nucleic acid molecule used in this example is:
5’-TTGTACTACACAAAAGTACTG-3’(SEQ ID NO.102);5'-TTGTACTACACAAAAGTACTG-3' (SEQ ID NO. 102);
根据上述小核酸分子设计第一核酸分子和第二核酸分子,分别如下:The first nucleic acid molecule and the second nucleic acid molecule are designed according to the above-mentioned small nucleic acid molecules, respectively as follows:
第一核酸分子(即小核酸分子的shRNA表达框架或shRNA-miR表达框架):First nucleic acid molecule (ie, shRNA expression framework or shRNA-miR expression framework for small nucleic acid molecules):
(1)小核酸分子的shRNA表达框架的序列组成为:(1) The sequence composition of the shRNA expression framework of the small nucleic acid molecule is:
5’-CCACTCCCTATCAGTGATAGAGAAAAGTGAAAGTCGAGTTTACCACTCCCTATCAGTGATAGAGAAAAGTGAAAGTCGAGTTTACCACTCCCTATCAGTGATAGAGAAAAGTGAAAGTCGAGTTTACCACTCCCTATCAGTGATAGAGAAAAGTGAAAGTCGAGCTCGGTACCCGGGTCGAGGTAGGCGTGTACGGTGGGAGGCCTATATAAGCAGAGCTCGTTTAGTGAACCGTCAGATCGCCTGGAGACGCCATCCACGCTGTTTTGACCTCCATAGAAGACACCGGGACCGATCCAGCCTGCTAGCGCCACC(SEQ ID NO.4)N1...N21TTCAAGAGA(SEQ ID NO.5)N22...N42TTTTTT-3’。5'-CCACTCCCTATCAGTGATAGAGAAAAGTGAAAGTCGAGTTTACCACTCCCTATCAGTGATAGAGAAAAGTGAAAGTCGAGTTTACCACTCCCTATCAGTGATAGAGAAAAGTGAAAGTCGAGTTTACCACTCCCTATCAGTGATAGAGAAAAGTGAAAGTCGAGCTCGGTACCCGGGTCGAGGTAGGCGTGTACGGTGGGAGGCCTATATAAGCAGAGCTCGTTTAGTGAACCGTCAGATCGCCTGGAGACGCCATCCACGCTGTTTTGACCTCCATAGAAGACACCGGGACCGATCCAGCCTGCTAGCGCCACC(SEQ ID NO.4)N 1 ...N 21 TTCAAGAGA(SEQ ID NO.5)N 22 ...N 42 TTTTTT-3'。
其中,in,
a)N1...N21为上述小核酸分子序列,N22...N42为上述小核酸分子序列的反向互补序列; a ) N1... N21 are the above-mentioned small nucleic acid molecule sequences, and N22 ... N42 are the reverse complementary sequences of the above-mentioned small nucleic acid molecule sequences;
b)如果质粒需要表达多个基因的shRNA,则每个基因分对应一个shRNA表达框架,然后无缝连接起来;b) If the plasmid needs to express shRNA of multiple genes, each gene corresponds to a shRNA expression frame, and then seamlessly connected;
c)带不同抗性基因的组成型shRNA质粒,只有抗性基因不同,其它序列一样;c) Constitutive shRNA plasmids with different resistance genes, only the resistance genes are different, and other sequences are the same;
d)N表示A或T或G或C碱基。d) N represents A or T or G or C base.
(2)小核酸分子的shRNA-miR表达框架:将小核酸分子序列替换microRNA-30或者microRNA-155中的靶序列得到。具体序列如下:(2) shRNA-miR expression framework of small nucleic acid molecule: obtained by replacing the target sequence in microRNA-30 or microRNA-155 with the sequence of small nucleic acid molecule. The specific sequence is as follows:
5’-GAGGCTTCAGTACTTTACAGAATCGTTGCCTGCACATCTTGGAAACACTTGCTGGGATTACTTCTTCAGGTTAACCCAACAGAAGGCTAAAGAAGGTATATTGCTGTTGACAGTGAGCG(SEQ ID NO.6)M1N1...N21TAGTGAAGCCACAGATGTA(SEQ ID NO.7)N22...N42M2TGCCTACTGCCTCGGACTTCAAGGGGCTACTTTAGGAGCAATTATCTTGTTTACTAAAACTGAATACCTTGCTATCTCTTTGATACATTTTTACAAAGCTGAATTAAAATGGTATAAAT-3’(SEQ ID NO.8)。5'-GAGGCTTCAGTACTTTACAGAATCGTTGCCTGCACATCTTGGAAACACTTGCTGGGATTACTTCTTCAGGTTAACCCAACAGAAGGCTAAAGAAGGTATATTGCTGTTGACAGTGAGCG(SEQ ID NO.6)M 1 N 1 ...N 21 TAGTGAAGCCACAGATGTA(SEQ ID NO.7)N 22 ...N 42 M 2 TGCCTACTGCCTCGGACTTCAAGGGGCTACTTTAGGAGCAATTATCTTGTTTACTAAAACTGAATACCTTGCTATCTCTTTGATACATTTTTACAAAGCTGAATTAAAATGGTATAAAT-3'(SEQ ID NO.8)。
其中,in,
a)N1...N21为小核酸分子序列,N22...N42为小核酸分子序列的反向互补序列; a ) N1... N21 is the sequence of the small nucleic acid molecule, and N22 ... N42 is the reverse complementary sequence of the sequence of the small nucleic acid molecule;
b)如果质粒需要表达多个基因的shRNA-miR,则每个基因分对应一个shRNA-miR表达框架,然后无缝连接起来;b) If the plasmid needs to express shRNA-miRs of multiple genes, each gene corresponds to one shRNA-miR expression frame, and then they are seamlessly connected;
c)带不同抗性基因的组成型shRNA-miR质粒,只有抗性基因不同,其它序列一样;c) Constitutive shRNA-miR plasmids with different resistance genes, only the resistance genes are different, and other sequences are the same;
d)N表示A或T或G或C碱基,M碱基表示A或C碱基;d) N represents A or T or G or C base, and M base represents A or C base;
e)若N1为G碱基,则M1为A碱基;否则M1为C碱基;e) if N 1 is a G base, then M 1 is an A base; otherwise, M 1 is a C base;
f)M1碱基与M2碱基互补。f) The M1 base is complementary to the M2 base.
第二核酸分子:包括至少3个重复的小核酸分子序列的反向互补序列,优选为6~10个重复的小核酸分子序列的反向互补序列。小核酸分子序列的反向互补序列可通过随机的Linker序列连接。The second nucleic acid molecule: includes at least 3 repeats of the reverse complement of the sequence of the small nucleic acid molecule, preferably the reverse complement of the sequence of 6 to 10 repeats of the small nucleic acid molecule. Reverse complements of small nucleic acid molecule sequences can be linked by random Linker sequences.
作为本发明的一个实施例,所述第二核酸分子由开头10nt的随机序列、及8个重复的小核酸分子序列的反向互补序列通过随机的linker序列(CGTA)连接而成:As an embodiment of the present invention, the second nucleic acid molecule is formed by connecting the random sequence of the first 10 nt and the reverse complementary sequence of 8 repeated small nucleic acid molecule sequences through a random linker sequence (CGTA):
5’-atTCTAGATACAGTACTTTTGTGTAGTACAACGTACAGTACTTTTGTGTAGTACAACGTACAGTACTTTTGTGTAGTACAACGTACAGTACTTTTGTGTAGTACAACGTACAGTACTTTTGTGTAGTACAACGTACAGTACTTTTGTGTAGTACAACGTACAGTACTTTTGTGTAGTACAACGTACAGTACTTTTGTGTAGTACAACGTA-3’(SEQID NO.9)。5'-atTCTAGATACAGTACTTTTGTGTAGTACAACGTACAGTACTTTTGTGTAGTACAACGTACAGTACTTTTGTGTAGTACAACGTACAGTACTTTTGTGTAGTACAACGTACAGTACTTTTGTGTAGTACAACGTACAGTACTTTTGTGTAGTACAACGTACAGTACTTTTGTGTAGTACAACGTACAGTACTTTTGTGTAGTACAACGTA-3' (SEQ ID NO. 9).
3.免疫兼容分子的选择3. Selection of Immunocompatible Molecules
本发明实施例中使用的免疫兼容分子的种类及序列如表2和表3所示。The types and sequences of the immunocompatible molecules used in the examples of the present invention are shown in Table 2 and Table 3.
表2 免疫兼容分子的种类及作用Table 2 Types and functions of immunocompatible molecules
表3 免疫兼容分子的靶序列Table 3 Target sequences of immunocompatible molecules
下面表8-表9各实验组别的shRNA或shRNA-miR免疫兼容分子序列均为采用表3中的靶序列构建得到的shRNA或shRNA-miR免疫兼容分子。本领域的技术人员可以理解:以其他靶序列构建得到的shRNA或shRNA-miR免疫兼容分子同样可以实现本发明的技术效果,均落入本发明权利要求的保护范围。The shRNA or shRNA-miR immune-compatible molecule sequences of each experimental group in Tables 8 to 9 below are all shRNA or shRNA-miR immune-compatible molecules constructed by using the target sequences in Table 3. Those skilled in the art can understand that shRNA or shRNA-miR immune-compatible molecules constructed with other target sequences can also achieve the technical effects of the present invention, which all fall within the protection scope of the claims of the present invention.
4.shRNA/miRNA加工复合体基因和抗干扰素效应分子的选择4. Selection of shRNA/miRNA processing complex genes and anti-interferon effector molecules
(1)shRNA/miRNA加工复合体基因的选择(1) Selection of shRNA/miRNA processing complex genes
本发明中使用的shRNA/miRNA加工复合体基因包括可诱导关闭表达的shRNA和/或miRNA加工机器。所述可诱导关闭表达的shRNA和/或miRNA加工机器具体包括:Drosha(Accession number:NM_001100412)、Ago1(Accession number:NM_012199)、Ago2(Accession number:NM_001164623)、Dicer1(Accession number:NM_001195573)、Exportin-5(Accession number:NM_020750)、TRBP(Accession number:NM_134323)、PACT(Accession number:NM_003690)和DGCR8(Accession number:NM_022720)。The shRNA/miRNA processing complex genes used in the present invention include shRNA and/or miRNA processing machinery that can inducibly shut down expression. The inducible shRNA and/or miRNA processing machines specifically include: Drosha (Accession number: NM_001100412), Ago1 (Accession number: NM_012199), Ago2 (Accession number: NM_001164623), Dicer1 (Accession number: NM_001195573), Exportin -5 (Accession number: NM_020750), TRBP (Accession number: NM_134323), PACT (Accession number: NM_003690), and DGCR8 (Accession number: NM_022720).
(2)抗干扰素效应分子的选择(2) Selection of anti-interferon effector molecules
本发明中使用的抗干扰素效应分子包括可诱导关闭表达的针对抑制PKR、2-5As、IRF-3和IRF-7基因的shRNA和/或shRNA-miR表达序列,以降低dsRNA诱发的干扰素反应,从而避免产生细胞毒性。The anti-interferon effector molecules used in the present invention include shRNA and/or shRNA-miR expression sequences for inhibiting PKR, 2-5As, IRF-3 and IRF-7 genes that can induce shut down expression to reduce dsRNA-induced interferon reaction to avoid cytotoxicity.
其中,所述抗干扰素效应分子的靶序列如表4所示。The target sequences of the anti-interferon effector molecules are shown in Table 4.
表4 抗干扰素效应分子的靶序列Table 4 Target sequences of anti-interferon effector molecules
下面表8-表9各实验组别的抗干扰素效应分子序列均为采用表4中的靶序列构建得到的shRNA或shRNA-miR。本领域的技术人员可以理解:以其他靶序列构建得到的shRNA或shRNA-miR抗干扰素效应分子同样可以实现本发明的技术效果,均落入本发明权利要求的保护范围。The anti-interferon effector molecule sequences of each experimental group in Tables 8 to 9 below are all shRNAs or shRNA-miRs constructed by using the target sequences in Table 4. Those skilled in the art can understand that shRNA or shRNA-miR anti-interferon effector molecules constructed with other target sequences can also achieve the technical effects of the present invention, which all fall within the protection scope of the claims of the present invention.
5.外泌体加工合成基因的选择5. Selection of synthetic genes for exosome processing
外泌体加工合成基因选自STEAP3(NM_182915)、Syndecan-4(NM_002999)、L-天冬氨酸氧化酶片段(SEQ ID NO.69)、CD63-L7Ae(SEQ ID NO.70)和Cx43S368A中的至少一种。其中,Cx43S368A由Cx43(NM_000165)的第368位的S(丝氨酸)突变为A(丙氨酸))所得。The exosome processing synthesis gene is selected from STEAP3 (NM_182915), Syndecan-4 (NM_002999), L-aspartate oxidase fragment (SEQ ID NO.69), CD63-L7Ae (SEQ ID NO.70) and Cx43S368A at least one of. Among them, Cx43S368A is obtained by mutating S (serine) at position 368 of Cx43 (NM_000165) to A (alanine).
6.干细胞载体的选择6. Selection of Stem Cell Carriers
本发明实施例中的干细胞载体为多能干细胞,所述多能干细胞可选自胚胎干细胞(ESCs)、诱导多能干细胞(iPSCs)以及其他形式的多能干细胞,例如hPSCs-MSCs、NSCs、EBs细胞。The stem cell carrier in the embodiments of the present invention is pluripotent stem cells, and the pluripotent stem cells can be selected from embryonic stem cells (ESCs), induced pluripotent stem cells (iPSCs) and other forms of pluripotent stem cells, such as hPSCs-MSCs, NSCs, EBs cell.
其中,所述多能干细胞的制备方法如下:Wherein, the preparation method of described pluripotent stem cells is as follows:
ESCs:可选用HN4细胞,购自上海中科院。ESCs: HN4 cells can be used, purchased from Shanghai Chinese Academy of Sciences.
iPSCs:使用episomal-iPSCs诱导系统(6F/BM1-4C),pE3.1-OG--KS和pE3.1-L-Myc--hmiR302cluster经电转进入体细胞中,RM1培养基培养2天,用含2uM Parnate的BioCISO-BM1培养基培养2天,用含2uM Parnate、0.25mM sodium butyrate、3uM CHIR99021和0.5uM PD03254901的BioCISO-BM1培养基培养2天,然后用不含其它物质的BioCISO培养基继续培养至17天左右,挑取iPSCs克隆细胞,所挑取的iPSCs克隆细胞经纯化、消化、传代以获得稳定的iPSCs。具体构建方法参见:Stem Cell Res Ther.2017Nov2;8(1):245。iPSCs: Using episomal-iPSCs induction system (6F/BM1-4C), pE3.1-OG--KS and pE3.1-L-Myc--hmiR302cluster were electroporated into somatic cells, cultured in RM1 medium for 2 days, BioCISO-BM1 medium with 2uM Parnate for 2 days, BioCISO-BM1 medium with 2uM Parnate, 0.25mM sodium butyrate, 3uM CHIR99021 and 0.5uM PD03254901 for 2 days, then continued with BioCISO medium without other substances After culturing for about 17 days, the iPSCs cloned cells were picked, and the picked iPSCs cloned cells were purified, digested and passaged to obtain stable iPSCs. For specific construction methods, see: Stem Cell Res Ther. 2017Nov2; 8(1):245.
hPSCs-MSCs:将iPSCs用含10uM TGFβ抑制剂SB431542的BioCISO培养基培养25天,直至80-90细胞汇合度时进行消化传代(2mg/mL Dispase),1:3传代到Matrigel包被的培养板中,接着ESC-MSC培养基(knockout DMEM培养基,含10%KSR、NEAA、双抗、谷氨酰胺、β-巯基乙醇、10ng/mL bFGF和SB-431542)进行培养,每天换液,连续培养20天,直至80-90细胞汇合度时进行传代(1:3传代),具体构建方法参见:Proc Natl Acad Sci U S A.2015;112(2):530-535。hPSCs-MSCs: iPSCs were cultured in BioCISO medium containing 10uM TGFβ inhibitor SB431542 for 25 days, digested and passaged (2mg/mL Dispase) until 80-90 cell confluency, and passaged 1:3 to Matrigel-coated culture plates medium, followed by ESC-MSC medium (knockout DMEM medium, containing 10% KSR, NEAA, double antibody, glutamine, β-mercaptoethanol, 10 ng/mL bFGF and SB-431542) for culture, and the medium was changed every day for continuous The cells were cultured for 20 days and passaged until the confluence of 80-90 cells (1:3 passage). For the specific construction method, please refer to: Proc Natl Acad Sci US A. 2015; 112(2):530-535.
NSCs:将iPSCs用诱导培养基(knockout DMEM培养基,含10%KSR,含TGF-β抑制剂,BMP4抑制剂)培养14天,挑取玫瑰花环状的神经细胞至低粘附培养板中进行培养。低粘附培养板中的培养基包括比例为1:1的DMEM/F12(含1%N2,Invitrogen)和Neurobasal培养基(含2%B27,Invitrogen)、以及20ng/ml bFGF和20ng/ml EGF。使用Accutase进行消化传代。具体构建方法参见:FASEB J.2014;28(11):4642-4656。NSCs: iPSCs were cultured in induction medium (knockout DMEM medium, containing 10% KSR, containing TGF-β inhibitor, BMP4 inhibitor) for 14 days, and rosette-shaped neurons were picked into low-adherence culture plates to cultivate. Medium in low-adherence plates included DMEM/F12 (with 1% N2, Invitrogen) and Neurobasal medium (with 2% B27, Invitrogen) in a ratio of 1:1, and 20ng/ml bFGF and 20ng/ml EGF . Digestion passages were performed using Accutase. For the specific construction method, please refer to: FASEB J. 2014; 28(11): 4642-4656.
EBs细胞:将细胞汇合度达到95%的iPSCs使用BioC-PDE1消化6min,用机械刮传法将细胞刮成块状,沉降细胞团块。将沉降的细胞团块转移到低粘附培养板中使用BioCISO-EB1培养7天,隔天换液。7天后转移到Matrigel包被的培养板中使用BioCISO培养基进行贴壁培养7天,即可获得具有内、中、外三胚层结构的拟胚体(EBs)。具体构建方法参见:StemCell Res Ther.2017Nov 2;8(1):245。EBs cells: iPSCs with a cell confluency of 95% were digested with BioC-PDE1 for 6 min, and the cells were scraped into clumps by mechanical scraping method to settle the cell clumps. The settled cell clumps were transferred to low-adherence plates and incubated with BioCISO-EB1 for 7 days, with medium changes every other day. After 7 days, the cells were transferred to Matrigel-coated culture plates and cultured in BioCISO medium for 7 days to obtain embryoid bodies (EBs) with inner, middle and outer germ layers. For the specific construction method, please refer to: StemCell Res Ther.
所述多能干细胞衍生物还包括多能干细胞所分化的成体干细胞、各胚层细胞或组织、器官;所述成体干细胞包括间充质干细胞或者神经干细胞。The pluripotent stem cell derivatives also include adult stem cells differentiated from pluripotent stem cells, cells of each germ layer, tissues, and organs; and the adult stem cells include mesenchymal stem cells or neural stem cells.
构建质粒载体:Construct the plasmid vector:
本发明实施例中使用的质粒载体包括:Cas9(D10A)质粒、sgRNA质粒、Donor片段。The plasmid vectors used in the examples of the present invention include: Cas9 (D10A) plasmid, sgRNA plasmid, and Donor fragment.
上述质粒中的基因编辑均采用CRISPR-Cas9基因编辑系统,使用的Cas 9蛋白为Cas 9(D10A),Cas9(D10A)与sgRNA结合,sgRNA负责特异识别靶序列(细胞载体的基因组DNA),然后Cas 9(D10A)对该靶序列进行单链切割。基因组DNA发生双链断裂(DNA DoubleStrand Break,DSB),必须有两组Cas9(D10A)/sgRNA分别对细胞载体的基因组DNA的两条链进行切割,且切割的距离不能太远。Cas9(D10A)/sgRNA方案与Cas 9/sgRNA方案相比,优点是特异性更高,脱靶的概率更低。The gene editing in the above plasmids all use the CRISPR-Cas9 gene editing system, the Cas 9 protein used is Cas 9 (D10A), Cas9 (D10A) is combined with sgRNA, and the sgRNA is responsible for the specific recognition of the target sequence (genomic DNA of the cell vector), and then Cas 9 (D10A) single-stranded cleavage of the target sequence. Genomic DNA double-strand break (DNA DoubleStrand Break, DSB), there must be two sets of Cas9 (D10A)/sgRNA to cut the two strands of the genomic DNA of the cell vector, and the cutting distance should not be too far. Compared with the Cas9/sgRNA scheme, the Cas9(D10A)/sgRNA scheme has the advantages of higher specificity and lower probability of off-target.
其中,所述sgRNA的具体序列为:Wherein, the specific sequence of the sgRNA is:
sgRNA-AAVS1-1:5’-TATAAGGTGGTCCCAGCTCG-3’(SEQ ID NO.71);sgRNA-AAVS1-1: 5'-TATAAGGTGGTCCCAGCTCG-3' (SEQ ID NO. 71);
sgRNA-AAVS1-2:5’-AGGGCCGGTTAATGTGGCTC-3’(SEQ ID NO.72);sgRNA-AAVS1-2: 5'-AGGGCCGGTTAATGTGGCTC-3' (SEQ ID NO. 72);
sgRNA-B2M-1:5’-CTCCTGTTATATTCTAGAAC-3’(SEQ ID NO.73);sgRNA-B2M-1: 5'-CTCCTGTTATATTCTAGAAC-3' (SEQ ID NO. 73);
sgRNA-B2M-2:5’-TTTCAGCATCAATGTACCCT-3’(SEQ ID NO.74);sgRNA-B2M-2: 5'-TTTCAGCATCAATGTACCCT-3' (SEQ ID NO. 74);
sgRNA-B2M-3:5’-CGCGAGCACAGCTAAGGCCA-3’(SEQ ID NO.75);sgRNA-B2M-3: 5'-CGCGAGCACAGCTAAGGCCA-3' (SEQ ID NO. 75);
sgRNA-B2M-4:5’–ACTCTCTCTTTCTGGCCTGG-3’(SEQ ID NO.76);sgRNA-B2M-4: 5'-ACTCTCTCTTTCTGGCCTGG-3' (SEQ ID NO. 76);
sgRNA-CIITA-1:5’-GGCACTCAGAAGACACTGAT-3’(SEQ ID NO.77);sgRNA-CIITA-1: 5'-GGCACTCAGAAGACACTGAT-3' (SEQ ID NO. 77);
sgRNA-CIITA-2:5’–AAGGTGTCTGGTCGGAGAGC-3’(SEQ ID NO.78);sgRNA-CIITA-2: 5'-AAGGTGTCTGGTCGGAGAGC-3' (SEQ ID NO. 78);
sgRNA-CIITA-3:5’–ACCCAGCAGGGCGTGGAGCC-3’(SEQ ID NO.79);sgRNA-CIITA-3: 5'-ACCCAGCAGGGGCGTGGAGCC-3' (SEQ ID NO. 79);
sgRNA-CIITA-4:5’–GTCAGAGCCCCAAGGTAAAA-3’(SEQ ID NO.80)。sgRNA-CIITA-4: 5'-GTCAGAGCCCCAAGGTAAAA-3' (SEQ ID NO. 80).
构建上述质粒载体的具体方法为:The specific method of constructing the above-mentioned plasmid vector is:
(1)Cas9(D10A)质粒:直接从Addgene(Plasmid 41816,Addgene)订购获得。(1) Cas9 (D10A) plasmid: directly ordered from Addgene (Plasmid 41816, Addgene).
(2)sgRNA质粒:通过在原始空白质粒(Plasmid 41824,Addgene)中分别放入不同的靶序列构建得到。(2) sgRNA plasmid: constructed by adding different target sequences into the original blank plasmid (Plasmid 41824, Addgene).
其中,放入sgRNA质粒中的靶序列包括上述的免疫兼容分子的序列、shRNA/miRNA加工复合体基因的序列、抗干扰素效应分子的序列、外泌体加工合成基因的序列。Wherein, the target sequence put into the sgRNA plasmid includes the sequence of the above-mentioned immune compatible molecule, the sequence of the shRNA/miRNA processing complex gene, the sequence of the anti-interferon effector molecule, and the sequence of the exosome processing synthesis gene.
(3)Donor片段(KI质粒):(3) Donor fragment (KI plasmid):
a)设计PCR引物,以pUC18质粒(Takara,Code No.3218)为模板,使用高保真酶(南京诺唯赞生物,P505-d1)通过PCR的方法扩增得到Amp(R)-pUC origin片段;a) Design PCR primers, take pUC18 plasmid (Takara, Code No.3218) as template, use high-fidelity enzyme (Nanjing Novozymes, P505-d1) to amplify the Amp(R)-pUC origin fragment by PCR method ;
b)提取人细胞的基因组DNA并设计对应的引物,然后以人的基因组DNA为模板,使用高保真酶通过PCR的方法扩增得到重组臂;b) extracting the genomic DNA of human cells and designing corresponding primers, then using the human genomic DNA as a template, using a high-fidelity enzyme to amplify the recombinant arm by PCR;
c)设计KI(Knock-in)质粒元件的PCR扩增引物,然后以含该KI质粒元件的质粒为模板,使用高保真酶扩增得到KI质粒元件(亚克隆);c) Design the PCR amplification primers of the KI (Knock-in) plasmid element, and then use the plasmid containing the KI plasmid element as a template to amplify the KI plasmid element (subcloning) using a high-fidelity enzyme;
d)使用多片段重组酶(南京诺唯赞生物,C113-02)或overlap PCR连接上述扩增得到的Amp(R)-pUC origin片段、重组臂、KI质粒元件,形成一个完整的环状质粒。d) Use multi-fragment recombinase (Nanjing Novozan, C113-02) or overlap PCR to connect the amplified Amp(R)-pUC origin fragment, recombination arm, and KI plasmid element to form a complete circular plasmid .
其中,所述重组臂包括B2M重组臂、CIITA重组臂、AAVS1重组臂。Wherein, the recombination arm includes B2M recombination arm, CIITA recombination arm, and AAVS1 recombination arm.
所述B2M重组臂的序列如B2M-HR-L(SEQ ID NO.81)和B2M-HR-R(SEQ ID NO.82)所示。The sequences of the B2M recombination arms are shown in B2M-HR-L (SEQ ID NO. 81) and B2M-HR-R (SEQ ID NO. 82).
所述CIITA重组臂的序列如CIITA-HR-L(SEQ ID NO.83)和CIITA-HR-R(SEQ IDNO.84)所示。The sequences of the CIITA recombination arms are shown in CIITA-HR-L (SEQ ID NO. 83) and CIITA-HR-R (SEQ ID NO. 84).
所述AAVS1重组臂的序列如AAVS1-HR-L(SEQ ID NO.85)和AAVS1-HR-R(SEQ IDNO.86)所示。The sequences of the AAVS1 recombination arms are shown in AAVS1-HR-L (SEQ ID NO. 85) and AAVS1-HR-R (SEQ ID NO. 86).
本发明实施例制备得到的质粒可根据质粒中的表达框架类型分为组成型质粒和诱导型质粒。The plasmids prepared in the embodiments of the present invention can be classified into constitutive plasmids and inducible plasmids according to the type of expression framework in the plasmid.
上述组成型质粒中的表达框架包括shRNA组成型表达框架、shRNAmiR组成型表达框架。酶切上述组成型质粒获取的Donor片段,在敲入干细胞载体基因组DNA后,该片段的表达功能不可以进行调控。The expression frameworks in the above-mentioned constitutive plasmids include shRNA constitutive expression frameworks and shRNAmiR constitutive expression frameworks. The Donor fragment obtained by enzyme cleavage of the above constitutive plasmid, after knocking into the stem cell vector genomic DNA, the expression function of the fragment cannot be regulated.
上述诱导型质粒中的表达框架包括shRNA诱导型表达框架、shRNAmiR诱导型表达框架。酶切上述诱导型质粒获取的Donor片段,敲入干细胞载体基因组DNA后,该片段的表达功能可以通过添加诱导物的方法来调控,相当于对表达功能添加了一个开启或者关闭的开关。The expression frameworks in the above-mentioned inducible plasmids include shRNA-inducible expression frameworks and shRNAmiR-inducible expression frameworks. After digesting the Donor fragment obtained from the above inducible plasmid and knocking in the genomic DNA of the stem cell vector, the expression function of the fragment can be regulated by adding an inducer, which is equivalent to adding an on or off switch to the expression function.
上述表达框架的具体序列要求与结构组成如下所示。The specific sequence requirements and structural composition of the above expression frameworks are shown below.
(1)shRNA组成型表达框架的序列组成为:(1) The sequence composition of the shRNA constitutive expression framework is:
5’-GAGGGCCTATTTCCCATGATTCCTTCATATTTGCATATACGATACAAGGCTGTTAGAGAGATAATTGGAATTAATTTGACTGTAAACACAAAGATATTAGTACAAAATACGTGACGTAGAAAGTAATAATTTCTTGGGTAGTTTGCAGTTTTAAAATTATGTTTTAAAATGGACTATCATATGCTTACCGTAACTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACgctagcgccacc(SEQ ID NO.87)N1...N21TTCAAGAGAN22...N42TTTTTT-3’;5'-GAGGGCCTATTTCCCATGATTCCTTCATATTTGCATATACGATACAAGGCTGTTAGAGAGATAATTGGAATTAATTTGACTGTAAACACAAAGATATTAGTACAAAATACGTGACGTAGAAAGTAATAATTTCTTGGGTAGTTTGCAGTTTTAAAATTATGTTTTAAAATGGACTATCATATGCTTACCGTAACTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACgctagcgccacc(SEQ ID NO.87)N 1 ...N 21 TTCAAGAGAN 22 ...N 42 TTTTTT-3';
其中,in,
a)N1...N21为上述靶序列的shRNA靶序列,N22...N42为上述靶序列的shRNA靶序列的反向互补序列; a ) N1... N21 is the shRNA target sequence of the above target sequence, N22 ... N42 is the reverse complement of the shRNA target sequence of the above target sequence;
b)当使用上述shRNA组成型表达框架构建的质粒需要表达多个基因的shRNA时,则每个基因分别对应一个shRNA表达框架,然后无缝连接起来;b) when the plasmid constructed using the above-mentioned shRNA constitutive expression framework needs to express the shRNA of multiple genes, then each gene corresponds to a shRNA expression framework, and then seamlessly connects;
c)当上述shRNA组成型表达框架需要带不同抗性基因时,所述shRNA组成型表达框架中只有抗性基因序列不同,其它序列均保持一样;c) When the above-mentioned shRNA constitutive expression framework needs to carry different resistance genes, only the resistance gene sequences in the shRNA constitutive expression framework are different, and other sequences remain the same;
d)N表示A或T或G或C碱基。d) N represents A or T or G or C base.
(2)shRNAmiR组成型表达框架的序列组成为:(2) The sequence composition of the shRNAmiR constitutive expression framework is:
5’-GAGGCTTCAGTACTTTACAGAATCGTTGCCTGCACATCTTGGAAACACTTGCTGGGATTACTTCTTCAGGTTAACCCAACAGAAGGCTAAAGAAGGTATATTGCTGTTGACAGTGAGCGM1N1...N21TAGTGAAGCCACAGATGTAN22...N42M2TGCCTACTGCCTCGGACTTCAAGGGGCTACTTTAGGAGCAATTATCTTGTTTACTAAAACTGAATACCTTGCTATCTCTTTGATACATTTTTACAAAGCTGAATTAAAATGGTATAAAT-3’;5'-GAGGCTTCAGTACTTTACAGAATCGTTGCCTGCACATCTTGGAAACACTTGCTGGGATTACTTCTTCAGGTTAACCCAACAGAAGGCTAAAGAAGGTATATTGCTGTTGACAGTGAGCGM 1 N 1 ...N 21 TAGTGAAGCCACAGATGTAN 22 ...N 42 M 2 TGCCTACTGCCTCGGACTTCAAGGGGCTACTTTAGGAGCAATTATCTTGTTTACTAAAACTGAATACCTTGCTATCTCTTTGATACATTTTTACAAAGCTGAATTAAAATGGTATAAAT-3';
其中,in,
g)N1...N21为上述靶序列的shRNAmiR靶序列,N22...N42为上述靶序列的shRNAmiR靶序列的反向互补序列;g) N1 ... N21 are the shRNAmiR target sequences of the above target sequences, and N22...N42 are the reverse complementary sequences of the shRNAmiR target sequences of the above target sequences;
h)当使用上述shRNAmiR组成型表达框架构建的质粒需要表达多个基因的shRNAmiR时,则每个基因分别对应一个shRNAmiR表达框架,然后无缝连接起来;H) when the plasmid constructed using the above-mentioned shRNAmiR constitutive expression framework needs to express the shRNAmiR of multiple genes, then each gene corresponds to a shRNAmiR expression framework, and then seamlessly connected;
i)当上述shRNAmiR组成型表达框架需要带不同抗性基因时,所述shRNAmiR组成型表达框架中只有抗性基因序列不同,其它序列均保持一样;i) When the above-mentioned shRNAmiR constitutive expression framework needs to carry different resistance genes, only the resistance gene sequences in the shRNAmiR constitutive expression framework are different, and other sequences remain the same;
j)N表示A或T或G或C碱基,M碱基表示A或C碱基;j) N represents A or T or G or C base, and M base represents A or C base;
k)若N1为G碱基,则M1为A碱基;否则M1为C碱基;k) if N 1 is a G base, then M 1 is an A base; otherwise, M 1 is a C base;
l)M1碱基与M2碱基互补。 1 ) The M1 base is complementary to the M2 base.
(3)shRNA诱导型表达框架的序列组成为:(3) The sequence composition of the shRNA-inducible expression framework is:
5’-GAGGGCCTATTTCCCATGATTCCTTCATATTTGCATATACGATACAAGGCTGTTAGAGAGATAATTGGAATTAATTTGACTGTAAACACAAAGATATTAGTACAAAATACGTGACGTAGAAAGTAATAATTTCTTGGGTAGTTTGCAGTTTTAAAATTATGTTTTAAAATGGACTATCATATGCTTACCGTAACTTGAAAGTATTTCGATTTCTTGGCTTTATATATCTTGTGGAAAGGACtttaccactccctatcagtgatagagaaaagtgaaagtcgagtttaccactccctatcagtgatagagaaaagtgaaagtcgagtttaccactccctatcagtgatagagaaaagtgaaagtcgagtttaccactccctatcagtgatagagaaaagtgaaagtcgagtttaccactccctatcagtgatagagaaaagtgaaagtcgagtttaccactccctatcagtgatagagaaaagtgaaagtcgagtttaccactccctatcagtgatagagaaaagtgaaagtcgagctcggtacccgggtcgaggtaggcgtgtacggtgggaggcctatataagcagagctcgtttagtgaaccgtcagatcgcctggagacgccatccacgctgttttgacctccatagaagacaccgggaccgatccagcctgctagcgccacc(SEQ ID NO.88)N1...N21TTCAAGAGAN22...N42TTTTTT-3’;5'-(SEQ ID NO. 88) N 1 ... N 21 TTCAAGAGAN 22 ... N 42 TTTTTT-3';
其中,in,
e)N1...N21为上述对应靶序列的shRNA靶序列,N22...N42为上述对应靶序列的shRNA靶序列和/或小核酸分子的反向互补序列;e) N1... N21 are the shRNA target sequences corresponding to the above target sequences, and N22 ... N42 are the shRNA target sequences corresponding to the above target sequences and/or the reverse complementary sequences of the small nucleic acid molecules;
f)当使用上述shRNA组成型表达框架构建的质粒需要表达多个基因的shRNA时,则每个基因分别对应一个shRNA表达框架,然后无缝连接起来;f) when the plasmid constructed using the above-mentioned shRNA constitutive expression framework needs to express the shRNA of multiple genes, then each gene corresponds to an shRNA expression framework, which is then seamlessly connected;
g)当上述shRNA组成型表达框架需要带不同抗性基因时,所述shRNA组成型表达框架中只有抗性基因序列不同,其它序列均保持一样;g) When the above-mentioned shRNA constitutive expression framework needs to carry different resistance genes, only the resistance gene sequences in the shRNA constitutive expression framework are different, and other sequences remain the same;
h)N表示A或T或G或C碱基。h) N represents A or T or G or C base.
(4)shRNAmiR诱导型表达框架的序列组成如shRNAmiR组成型表达框架的序列组成所示。(4) The sequence composition of the shRNAmiR-inducible expression framework is shown in the sequence composition of the shRNAmiR constitutive expression framework.
上述方法构建的Cas9(D10A)质粒图谱如图1所示,AAVS1安全位点的sgRNA质粒图谱如图2-3所示,B2M基因的sgRNA质粒图谱如图4-7所示,CIITA基因的sgRNA质粒图谱如图8-11所示,构建的AAVS1KI质粒图谱(组成型和诱导型)如图12-15所示,B2M KI质粒图谱如图16所示,CIITA KI质粒图谱如图17所示。The Cas9 (D10A) plasmid map constructed by the above method is shown in Figure 1, the sgRNA plasmid map of the AAVS1 safety site is shown in Figure 2-3, the sgRNA plasmid map of the B2M gene is shown in Figure 4-7, and the sgRNA of the CIITA gene is shown in Figure 4-7. The plasmid map is shown in Figure 8-11, the constructed AAVS1KI plasmid map (constitutive and inducible) is shown in Figure 12-15, the B2M KI plasmid map is shown in Figure 16, and the CIITA KI plasmid map is shown in Figure 17.
构建干细胞载体Construction of stem cell vectors
本发明技术方案中,在构建的干细胞载体基因组中敲入的安全位点包括AAVS1安全位点、eGSH安全位点、H11安全位点。In the technical solution of the present invention, the safety sites knocked into in the constructed stem cell vector genome include the AAVS1 safety site, the eGSH safety site, and the H11 safety site.
AAVS1基因敲入的单细胞克隆操作包括以下步骤:The single-cell cloning operation for AAVS1 gene knock-in includes the following steps:
a)电转程序:a) Electric transfer procedure:
供体细胞准备:人多能干细胞Donor Cell Preparation: Human Pluripotent Stem Cells
试剂盒:Human Stem CellKit 1Kit: Human
仪器:电转仪Instrument: Electroporator
培养基:BioCISOMedium: BioCISO
诱导质粒:上述实施例构建的相应质粒。Induction plasmid: the corresponding plasmid constructed in the above example.
b)电转后的人多能干细胞进行含G418和puro的双抗生素培养基进行筛选。b) The electrotransformed human pluripotent stem cells were screened in double antibiotic medium containing G418 and puro.
c)进行单细胞克隆筛选及培养,获得单细胞克隆株。c) Screening and culturing single-cell clones to obtain single-cell clones.
d)将获得的单细胞克隆株进行培养。d) Culturing the obtained single-cell clone.
其中,单细胞克隆株培养试剂包括:Among them, the single-cell clone culture reagents include:
培养基为:BioCISO培养基、300μg/ml G418和0.5μg/ml puro。培养基需提前置于室温,避光条件放置30~60分钟,直至恢复到室温,但不可以置于37℃进行预热,以避免生物分子活性降低。The media were: BioCISO medium, 300 μg/ml G418 and 0.5 μg/ml puro. The medium should be placed at room temperature in advance, and placed in the dark for 30 to 60 minutes until it returns to room temperature, but it should not be preheated at 37°C to avoid the reduction of biomolecular activity.
基质胶:hESC级Matrigel。传代或复苏细胞前,将Matrigel工作液加入细胞培养瓶皿中并摇匀,确保Matrigel完全没过培养瓶皿底部,且在使用前任意一处Matrigel都不能干掉。为保证细胞能够更好的贴壁和存活,Matrigel放入37℃培养箱包被时间:1:100 XMatrigel不能低于0.5小时;1:200X Matrigel不能低于2小时。Matrigel: hESC grade Matrigel. Before passaging or resuscitating cells, add the Matrigel working solution to the cell culture flask and shake well to ensure that the Matrigel completely covers the bottom of the culture flask and that the Matrigel cannot be dried anywhere before use. In order to ensure better adherence and survival of cells, Matrigel should be placed in a 37°C incubator for wrapping time: 1:100X Matrigel should not be less than 0.5 hours; 1:200X Matrigel should not be less than 2 hours.
消化液:使用DPBS溶解EDTA至终浓度为0.5mM,pH7.4。所述EDTA不能使用水稀释,否则细胞会因渗透压降低而死亡。Digestion solution: dissolve EDTA in DPBS to a final concentration of 0.5mM, pH 7.4. The EDTA cannot be diluted with water, otherwise the cells will die due to reduced osmotic pressure.
冻存液:60%BioCISO、30%ESCs级FBS和10%DMSO。Freezing medium: 60% BioCISO, 30% ESCs-grade FBS and 10% DMSO.
单细胞克隆株培养步骤采用本领域常规维持传代培养过程。The single-cell clone culture step adopts the routine maintenance subculture process in the art.
其中,传代最佳时刻为细胞整体汇合度达到80%~90%。Among them, the best time for passage is when the overall confluence of cells reaches 80% to 90%.
传代最佳比例为1:4~1:7,传代后次日最佳汇合度应维持在20%~30%。The optimal ratio of passage is 1:4 to 1:7, and the optimal confluency the next day after passage should be maintained at 20% to 30%.
本发明中的具体传代操作步骤如下:The concrete passage steps in the present invention are as follows:
a)弃去包被好的细胞培养瓶皿中的Matrigel,加入适量所述培养基放入37℃、5%CO2培养箱中孵育;a) Discard the Matrigel in the coated cell culture flask, add an appropriate amount of the medium and incubate in a 37°C, 5% CO 2 incubator;
b)待细胞符合所述传代要求,弃去培养基上清,加入适量的0.5mM EDTA消化液到细胞瓶皿中;b) When the cells meet the passage requirements, discard the medium supernatant, and add an appropriate amount of 0.5mM EDTA digestion solution to the cell flask dish;
c)将细胞放入37℃、5%CO2培养箱中孵育5~10分钟(消化至镜下观察到大部分细胞收缩变圆但还未漂浮即可),吹打细胞使其从壁上脱离,将细胞悬液吸到离心管内,200g离心5分钟;c) Put the cells into a 37°C, 5% CO 2 incubator and incubate for 5-10 minutes (digested until most of the cells are shrunk and rounded but have not floated under the microscope), and the cells are detached from the wall by pipetting , suck the cell suspension into a centrifuge tube and centrifuge at 200g for 5 minutes;
d)离心后,弃去上清,用培养基重悬细胞,反复吹打细胞至混匀,然后将细胞转移至包被有Matrigel的瓶皿中,摇匀,镜下观察无异常后,摇匀置于37℃、5%CO2培养箱中进行培养;d) After centrifugation, discard the supernatant, resuspend the cells with medium, pipetting the cells repeatedly to mix, then transfer the cells to a Matrigel-coated bottle, shake well, and shake well after observing no abnormality under the microscope Culture in a 37°C, 5% CO2 incubator;
e)次日观察细胞贴壁存活状态,吸掉培养基,每天按时换液。e) Observe the cell adherent survival state the next day, aspirate the medium, and change the medium on time every day.
基因敲入检测方法:Gene knock-in detection method:
1.单细胞克隆AAVS1基因敲入检测。1. Single-cell clone AAVS1 gene knock-in detection.
(1)AAVS1基因敲入检测说明。(1) Description of AAVS1 gene knock-in detection.
检测原理:Detection principle:
PCR检测经过基因敲入处理的细胞,测试该细胞是否为纯合子。由于两个Donor片段只有抗性基因的序列具有差异性,因此要判断该细胞是否为纯合子(两条染色体分别敲入不同抗性基因的Donor片段),就需要检测该细胞的基因组是否含有两种抗性基因的Donor片段,只有双敲入的细胞才有可能是正确的纯合子。Knock-in treated cells are tested for homozygosity by PCR. Since the two Donor fragments only have differences in the sequence of the resistance gene, to determine whether the cell is homozygous (two chromosomes knock-in the Donor fragments of different resistance genes respectively), it is necessary to detect whether the genome of the cell contains two genes. The Donor fragment of the resistance gene, only double knock-in cells may be correct homozygous.
检测方法:Detection method:
在Donor质粒(KI质粒)内部(非重组臂部分)设计一条引物,然后在细胞的基因组(非重组臂部分)设计另一条引物。如果Donor片段在基因组能够正确插入,就会有目的条带出现,否则无目的条带出现。One primer was designed inside the Donor plasmid (KI plasmid) (non-recombination arm part), and then another primer was designed in the genome of the cell (non-recombination arm part). If the Donor fragment can be inserted correctly in the genome, there will be a target band, otherwise no target band will appear.
其中,上述引物的具体序列及扩增条件如下表所示。The specific sequences and amplification conditions of the above primers are shown in the following table.
表5 AAVS1基因敲入检测引物的具体序列及扩增条件Table 5 Specific sequences and amplification conditions of AAVS1 gene knock-in detection primers
(2)B2M和CIITA基因敲入检测说明。(2) Description of B2M and CIITA gene knock-in detection.
B2M和CIITA基因3’UTR处第二核酸分子敲入的检测方法与AAVS1的检测原理相同,采用的PCR检测条件如表6和7所示:The detection method of the second nucleic acid molecule knock-in at the 3'UTR of B2M and CIITA genes is the same as that of AAVS1. The PCR detection conditions used are shown in Tables 6 and 7:
表6 B2M基因敲入检测引物的具体序列及扩增条件Table 6 Specific sequences and amplification conditions of B2M gene knock-in detection primers
表7 CIITA基因敲入检测引物的具体序列及扩增条件Table 7 Specific sequences and amplification conditions of CIITA gene knock-in detection primers
利用本领域常规技术将选取的质粒敲入干细胞载体基因组:The selected plasmid is knocked into the stem cell vector genome using conventional techniques in the art:
按照下述表8和表9中的分组,分别将CD47抑制因子的序列、免疫兼容分子的序列、shRNA/miRNA加工复合体基因的序列、抗干扰素效应分子的序列、外泌体加工合成基因采用本领域常规技术敲入到所述干细胞载体安全位点中,获得不同类型的组成型干细胞表达载体和诱导型干细胞表达载体,以检测其表达可行性。According to the following groups in Table 8 and Table 9, the sequences of CD47 inhibitors, immune-compatible molecules, shRNA/miRNA processing complex genes, anti-interferon effector molecules, and exosome processing synthesis genes were respectively Knock into the safe site of the stem cell vector using conventional techniques in the art to obtain different types of constitutive stem cell expression vectors and inducible stem cell expression vectors to test their expression feasibility.
表8 组成型敲入表达实验分组Table 8 Groups of constitutive knock-in expression experiments
其中,“+”号表示基因或核酸序列的敲入,“-”号表示基因敲除。Among them, the "+" sign indicates the knock-in of a gene or nucleic acid sequence, and the "-" sign indicates the gene knock-out.
总体原则:靶向抑制因子的shRNA(或shRNA-miR)放入对应质粒的shRNA(或shRNA-miR)表达框架2内,其余抑制因子的shRNA(或shRNA-miR)放入对应质粒的shRNA(或shRNA-miR)表达框架1内,基因序列放入MCS内。General principle: The shRNA (or shRNA-miR) targeting the inhibitor is placed in the shRNA (or shRNA-miR)
B2M-3’UTR-miRNA-locus或CIITA-3’UTR-miRNA-locus即第二核酸分子(SEQ IDNO.9),分别敲入B2M和CIITA基因的3’UTR区域。B2M-3'UTR-miRNA-locus or CIITA-3'UTR-miRNA-locus, the second nucleic acid molecule (SEQ ID NO. 9), was knocked into the 3'UTR region of the B2M and CIITA genes, respectively.
B2M/CIITA-3’UTR-shRNA为小核酸分子的shRNA表达框架,也即第一核酸分子,特异性靶向B2M基因和CIITA基因3’UTR区域第二核酸分子的转录产物,敲入位点为基因组安全位点AAVS1。B2M/CIITA-3'UTR-shRNA is the shRNA expression framework of small nucleic acid molecules, that is, the first nucleic acid molecule, which specifically targets the transcription product of the second nucleic acid molecule in the 3'UTR region of the B2M gene and CIITA gene, and the knock-in site AAVS1 is the genomic safety site.
B2M/CIITA-3’UTR-shRNA-miR为小核酸分子的shRNA-miR表达框架,也即第一核酸分子,靶向B2M基因和CIITA基因3’UTR区域第二核酸分子的转录产物,敲入位点为基因组安全位点AAVS1。B2M/CIITA-3'UTR-shRNA-miR is the shRNA-miR expression framework of small nucleic acid molecules, that is, the first nucleic acid molecule, targeting the transcription product of the second nucleic acid molecule in the 3'UTR region of the B2M gene and CIITA gene, knock-in The site is the genomic safety site AAVS1.
若表达框或者MCS需要插入多个片段,可先使用EMCV IRESwt(SEQ ID NO.101)连接起来,然后插入。If the expression cassette or MCS needs to insert multiple fragments, it can be connected with EMCV IRESwt (SEQ ID NO. 101) first, and then inserted.
基因敲入的sgRNA质粒为:sgRNA clone B2M-1、sgRNA clone B2M-2,、sgRNAclone CIITA-1和sgRNA clone CIITA-2。The sgRNA plasmids for gene knock-in are: sgRNA clone B2M-1, sgRNA clone B2M-2, sgRNAclone CIITA-1 and sgRNA clone CIITA-2.
基因敲除使用的sgRNA质粒为:sgRNA clone B2M-3、sgRNA clone B2M-4、sgRNAclone CIITA-3、sgRNA clone CIITA-4。The sgRNA plasmids used for gene knockout are: sgRNA clone B2M-3, sgRNA clone B2M-4, sgRNAclone CIITA-3, sgRNA clone CIITA-4.
(1)Aa1分组:(1) Aa1 grouping:
AAVS1 KI Vector(shRNA,组成型)质粒的shRNA表达框架2放入靶向CD47的shRNA序列。The
(2)Aa2分组:(2) Aa2 grouping:
AAVS1 KI Vector(shRNA,组成型)质粒的shRNA表达框架2放入靶向CD47的shRNA序列,shRNA表达框架1放入其余的shRNA序列(包括B2M/CIITA-3’UTR-shRNA的靶序列),MCS放入基因序列。The
B2M KI Vector放入B2M-3’UTR-miRNA-locus。The B2M KI Vector was placed into the B2M-3'UTR-miRNA-locus.
CIITA KI Vector放入CIITA-3’UTR-miRNA-locus。CIITA KI Vector was put into CIITA-3'UTR-miRNA-locus.
(3)Aa3分组:(3) Aa3 grouping:
AAVS1 KI Vector(shRNA,组成型)质粒的shRNA表达框架2放入靶向CD47的shRNA序列,shRNA表达框架1放入其余的shRNA靶序列,敲除B2M和CIITA,MCS放入基因序列。The
(4)Aa4分组:(4) Aa4 grouping:
AAVS1 KI Vector(shRNA,组成型)质粒的shRNA表达框架2放入靶向CD47的shRNA序列,shRNA表达框架1放入其余的shRNA靶序列,MCS放入基因序列。The
(5)Ab1分组:(5) Ab1 grouping:
AAVS1 KI Vector(shRNA-miR,组成型)质粒的shRNA-miR表达框架2放入靶向CD47的shRNA-miR序列。The shRNA-
(6)Ab2分组:(6) Ab2 grouping:
AAVS1 KI Vector(shRNA-miR,组成型)质粒的shRNA-miR表达框架2放入靶向CD47的shRNA-miR序列,shRNA-miR表达框架1放入其余的shRNA-miR靶序列(包括B2M/CIITA-3’UTR-shRNA-miR的靶序列),MCS放入基因序列。The shRNA-
B2M KI Vector放入B2M-3’UTR-miRNA-locus。The B2M KI Vector was placed into the B2M-3'UTR-miRNA-locus.
CIITA KI Vector放入CIITA-3’UTR-miRNA-locus。CIITA KI Vector was put into CIITA-3'UTR-miRNA-locus.
(7)Ab3分组:(7) Ab3 grouping:
AAVS1 KI Vector(shRNA-miR,组成型)质粒的shRNA-miR表达框架2放入靶向CD47的shRNA-miR序列,shRNA-miR表达框架1放入其余的shRNA-miR靶序列,敲除B2M和CIITA,MCS放入基因序列。The shRNA-
(8)Ab4分组:(8) Ab4 grouping:
AAVS1 KI Vector(shRNA-miR,组成型)质粒的shRNA-miR表达框架2放入靶向CD47的shRNA-miR序列,shRNA-miR表达框架1放入其余的shRNA-miR靶序列,MCS放入基因序列。The shRNA-
表9 诱导型敲入表达实验分组Table 9 Groups of inducible knock-in expression experiments
其中,“+”号表示基因或核酸序列的敲入,“-”号表示基因敲除。Among them, the "+" sign indicates the knock-in of a gene or nucleic acid sequence, and the "-" sign indicates the gene knock-out.
总体原则如上述组成型敲入表达实验分组所示。The general principle is shown in the above grouping of constitutive knock-in expression experiments.
(1)B1分组:(1) Group B1:
AAVS1 KI Vector(shRNA,诱导型)质粒的shRNA表达框架2放入靶向CD47的shRNA序列,shRNA表达框架1放入其余的shRNA靶序列(包括B2M/CIITA-3’UTR-shRNA的靶序列),MCS放入基因序列。加入Tet-Off系统诱导系统。The
B2M KI Vector放入B2M-3’UTR-miRNA-locus。The B2M KI Vector was placed into the B2M-3'UTR-miRNA-locus.
CIITA KI Vector放入CIITA-3’UTR-miRNA-locus。CIITA KI Vector was put into CIITA-3'UTR-miRNA-locus.
(2)B2分组:(2) Group B2:
AAVS1 KI Vector(shRNA-miR,诱导型)质粒的shRNA-miR表达框架2放入靶向CD47的shRNA-miR序列,shRNA-miR表达框架1放入其余的shRNA-miR靶序列(包括B2M/CIITA-3’UTR-shRNA-miR的靶序列),MCS放入基因序列。加入Tet-Off系统诱导系统。The shRNA-
B2M KI Vector放入B2M-3’UTR-miRNA-locus。The B2M KI Vector was placed into the B2M-3'UTR-miRNA-locus.
CIITA KI Vector放入CIITA-3’UTR-miRNA-locus。CIITA KI Vector was put into CIITA-3'UTR-miRNA-locus.
(3)B3分组:(3) Group B3:
AAVS1 KI Vector(shRNA,诱导型)质粒的shRNA表达框架2放入靶向CD47的shRNA序列,shRNA表达框架1放入其余的shRNA靶序列(包括B2M/CIITA-3’UTR-shRNA的靶序列),MCS放入基因序列。加入Tet-Off系统诱导系统。The
(4)B4分组:(4) Group B4:
AAVS1 KI Vector(shRNA-miR,诱导型)质粒的shRNA-miR表达框架2放入靶向CD47的shRNA-miR序列,shRNA-miR表达框架1放入其余的shRNA-miR靶序列(包括B2M/CIITA-3’UTR-shRNA-miR的靶序列),MCS放入基因序列。加入Tet-Off系统诱导系统。The shRNA-
其中,上述组成型和诱导型敲入在进行免疫兼容改造的时候,可以先在hPSCs上进行进行改造,改造完成后再分化成多能干细胞的衍生物进行运用;也可以在hPSCs分化成多能干细胞的衍生物后再进行免疫兼容改造。Among them, the above-mentioned constitutive and inducible knock-in can be transformed into hPSCs first, and then differentiated into derivatives of pluripotent stem cells for use when undergoing immune-compatible transformation; Derivatives of stem cells are then immunocompatibly engineered.
本发明中的Tet-Off系统具体为:The Tet-Off system in the present invention is specifically:
在没有四环素存在时,tTA蛋白持续作用在tet启动子上,使基因持续表达。在需要转基因保持在一个持续表达状态下,该系统是非常有用。加入四环素时,四环素可使tTA蛋白的结构变化,使其不能与启动子结合,从而使其驱动的基因表达水平下降。为了使该系统保持“关闭”状态,必须连续添加四环素。In the absence of tetracycline, the tTA protein continues to act on the tet promoter, allowing the gene to continue to be expressed. This system is very useful where transgenes need to be maintained in a state of continuous expression. When tetracycline is added, tetracycline can change the structure of the tTA protein so that it cannot bind to the promoter, thereby reducing the level of gene expression it drives. To keep this system "off", tetracycline must be added continuously.
Tet-Off系统以及一种或多种免疫兼容分子的序列敲入多能干细胞的基因组安全位点处,通过四环素的添加与否精准开启或关闭免疫兼容分子的表达,从而可逆调控多能干细胞或其衍生物中主要组织相容性复合体相关基因的表达。The Tet-Off system and the sequence of one or more immune-compatible molecules are knocked into the genome safety site of pluripotent stem cells, and the expression of immune-compatible molecules can be accurately turned on or off by the addition of tetracycline, thereby reversibly regulating pluripotent stem cells or Expression of major histocompatibility complex-related genes in its derivatives.
表达靶向CD47抑制因子的多能干细胞或其衍生物对CD47的抑制效果检测:Detection of CD47 inhibitory effect of pluripotent stem cells or their derivatives expressing targeted CD47 inhibitors:
将表8和表9各实验组方案敲入iPSCs、MSCs、NSCs、EBs细胞的基因组安全位点,37℃,0.5%CO2培养箱培养,收集培养基上清,含有敲入外泌体加工合成基因序列的细胞利用外泌体提取试剂盒(BestBio,lot#BB-3901)提取培养上清中的外泌体。培养上清37℃条件下3000g离心15min,收集上清后在37℃条件下10000g离心20min,收集上清,按4:1比例加入提取液A,上下颠倒1min,37℃过夜。4℃条件下10000g离心60min,收集沉淀即可。The protocols of each experimental group in Table 8 and Table 9 were knocked into the genomic safety sites of iPSCs, MSCs, NSCs, and EBs cells, cultured at 37°C in a 0.5% CO 2 incubator, and the supernatant of the medium was collected, containing the knock-in exosome processing. Cells with synthetic gene sequences were used to extract exosomes from the culture supernatant using an exosome extraction kit (BestBio, lot #BB-3901). The culture supernatant was centrifuged at 3000g for 15min at 37°C. After collecting the supernatant, centrifuged at 10,000g for 20min at 37°C to collect the supernatant, add extract A at a ratio of 4:1, invert upside down for 1min, and overnight at 37°C. Centrifuge at 10,000g for 60min at 4°C to collect the precipitate.
再利用流式细胞计量测定法对多能干细胞表达的CD47抑制因子的阻断效果进行测试。在CHO细胞的培养基中添加含CD47抑制因子的外泌体,并对表达CD47的CHO细胞进行培养72h。消化成单个细胞并用PBS洗涤细胞2次后,将FITC标记的CD47抗体融合蛋白加入到试管中,37℃温育30分钟。使用流式细胞仪进行流式细胞计量分析。根据染色的平均荧光强度(MFI),即可测量出多能干细胞表达的CD47抑制因子抑制CHO细胞表达CD47的效果。The blocking effect of CD47 inhibitor expressed by pluripotent stem cells was then tested by flow cytometry. The exosomes containing CD47 inhibitor were added to the medium of CHO cells, and the CHO cells expressing CD47 were cultured for 72 h. After being digested into single cells and washed twice with PBS, the FITC-labeled CD47 antibody fusion protein was added to the test tube and incubated at 37°C for 30 minutes. Flow cytometric analysis was performed using a flow cytometer. According to the mean fluorescence intensity (MFI) of staining, the effect of CD47 inhibitor expressed by pluripotent stem cells in inhibiting the expression of CD47 by CHO cells can be measured.
N(对照)组是指没有添加CD47抑制因子或含CD47抑制因子的外泌体进行培养的表达CD47的CHO细胞。The N (control) group refers to CD47-expressing CHO cells cultured without the addition of CD47 inhibitor or CD47 inhibitor-containing exosomes.
各实验组的检测结果如表10所示。The test results of each experimental group are shown in Table 10.
表10 流式细胞计量检测表达CD47的细胞的CD47表达结果Table 10 CD47 expression results of CD47-expressing cells detected by flow cytometry
独立样本T检验(*p<0.01)。Independent sample t-test (*p<0.01).
从上表可以看出,本发明的多能干细胞或其衍生物所表达的被外泌体包裹的CD47抑制因子能有效抑制靶细胞的CD47表达。而且其抑制程度在各组中表达相对恒定,所以多能干细胞衍生物所表达的CD47抑制因子不受细胞分化形态及其他外源基因(免疫兼容改造)所影响。It can be seen from the above table that the CD47 inhibitory factor encapsulated by exosomes expressed by the pluripotent stem cells or their derivatives of the present invention can effectively inhibit the CD47 expression of the target cells. Moreover, the degree of inhibition was relatively constant in each group, so the CD47 inhibitor expressed by pluripotent stem cell derivatives was not affected by cell differentiation morphology and other exogenous genes (immunocompatible transformation).
表达靶向CD47抑制因子的多能干细胞或其衍生物的抗肿瘤效果检测:Detection of anti-tumor effects of pluripotent stem cells or their derivatives expressing targeted CD47 inhibitors:
将表8和表9各实验组方案敲入iPSCs、MSCs、NSCs、EBs细胞的基因组安全位点,得到得到表达CD47抑制因子细胞。使用LDH(乳酸脱氢酶)释放法检测其抗肿瘤效果。The protocols of each experimental group in Table 8 and Table 9 were knocked into the genomic safety sites of iPSCs, MSCs, NSCs, and EBs cells to obtain cells expressing CD47 inhibitory factors. The antitumor effect was detected by LDH (lactate dehydrogenase) release assay.
检测原理:Detection principle:
NK细胞会攻击肿瘤细胞造成肿瘤细胞死亡,而无法表达CD47抑制因子的多能干细胞的培养基上清培育的肿瘤细胞是不会被NK细胞所识别,会发生免疫逃逸。由于NK细胞在杀伤靶细胞时,CD107a分子会被转运到细胞膜表面,NK细胞膜表面CD107a自然表达频率很低,仅为1.2%~5.8%,因此,只有CD107a分子阳性表达的NK细胞才为具有杀伤活性的NK细胞。所以,通过检测NK细胞表面CD107a分子,可以得到NK细胞杀伤肿瘤细胞的能力。NK cells will attack tumor cells and cause tumor cell death, while tumor cells cultured on the culture supernatant of pluripotent stem cells that cannot express CD47 inhibitory factors will not be recognized by NK cells, and immune escape will occur. Since CD 107a molecules are transported to the cell membrane surface when NK cells kill target cells, the natural expression frequency of CD 107a on the NK cell membrane surface is very low, only 1.2% to 5.8%. Therefore, only NK cells with positive expression of CD 107a molecules can NK cells with killing activity. Therefore, by detecting the CD 107a molecule on the surface of NK cells, the ability of NK cells to kill tumor cells can be obtained.
具体检测步骤如下:The specific detection steps are as follows:
(a)效应细胞的准备:(a) Preparation of effector cells:
使用MagniSortTM Human NK cell Enrichment Kit(InvitrogenTM,货号:8804-6819-74)试剂盒分选分离出NK细胞。将分离出的NK细胞重悬在含10%FBS的RPMI1640培养基中,通过台盼蓝染色计数细胞,并浓缩至1×107细胞/mL。NK cells were isolated by sorting using the MagniSort ™ Human NK cell Enrichment Kit (Invitrogen ™ , Cat. No. 8804-6819-74). The isolated NK cells were resuspended in RPMI1640 medium containing 10% FBS, cells were counted by trypan blue staining, and concentrated to 1 x 107 cells/mL.
(b)靶细胞的准备:(b) Preparation of target cells:
靶细胞为肿瘤细胞(NIC肺癌细胞),将NIC肺癌细胞消化重悬,通过台盼蓝染色计数细胞,配成1×107细胞/mL的细胞悬液。The target cells were tumor cells (NIC lung cancer cells), NIC lung cancer cells were digested and resuspended, cells were counted by trypan blue staining, and a cell suspension of 1×10 7 cells/mL was prepared.
(c)将NK细胞(效应细胞)和靶细胞(E)以一定比例混合(E/NK=10:1、25:1、50:1,E/NK为靶细胞与效应细胞NK的比),置于96孔板中,在37℃,5%CO2培养孵育4h,最大释放组加入100μL 1%NP-40(最大释放组以0.1%NP-40代替效应细胞),不加靶细胞。自然释放组加入100μL 0.9%生理盐水,不加靶细胞。在500rpm条件下离心5min,取上清液100μL于另一96孔板中,加底物液100μL,室温作用10min后加0.1mol/L柠檬酸25μL/孔终止酶促反应,用酶联检测仪在570nm波长下测定各孔的光密度。(c) Mix NK cells (effector cells) and target cells (E) in a certain ratio (E/NK=10:1, 25:1, 50:1, E/NK is the ratio of target cells to effector cells NK) , placed in a 96-well plate, incubated at 37°C, 5% CO 2 for 4 h, 100 μL of 1% NP-40 was added to the maximum release group (0.1% NP-40 was used instead of effector cells in the maximum release group), and no target cells were added. In the natural release group, 100 μL of 0.9% saline was added, but no target cells were added. Centrifuge at 500 rpm for 5 min, take 100 μL of supernatant to another 96-well plate, add 100 μL of substrate solution, add 0.1 mol/L citric acid 25 μL/well for 10 min at room temperature to stop the enzymatic reaction, and use an enzyme-linked detector to stop the enzymatic reaction. The optical density of each well was measured at a wavelength of 570 nm.
(d)结果计算:(d) Result calculation:
根据公式:According to the formula:
得到表达靶向CD47抑制因子的多能干细胞或其衍生物对NK细胞杀伤肿瘤细胞的影响。The effects of pluripotent stem cells or their derivatives expressing targeting CD47 inhibitory factors on NK cells killing tumor cells were obtained.
各实验组的检测结果如表11所示。The test results of each experimental group are shown in Table 11.
表11 各实验组表达的CD47抑制因子对NK细胞杀伤肿瘤细胞的影响Table 11 Effects of CD47 inhibitory factors expressed in each experimental group on NK cells killing tumor cells
其中,N(对照)组是指未用表达CD47抑制因子的多能干细胞的培养基上清处理的NK细胞。独立样本T检验(*p<0.01)。Here, the N (control) group refers to NK cells not treated with the supernatant of the medium of CD47 inhibitor-expressing pluripotent stem cells. Independent sample t-test (*p<0.01).
通过以上实验,可以证明本发明制备的多能干细胞或其衍生物所表达的被外泌体包裹的CD47抑制因子起到抗肿瘤作用。Through the above experiments, it can be proved that the CD47 inhibitory factor encapsulated by exosomes expressed by the pluripotent stem cells or derivatives thereof prepared by the present invention has an anti-tumor effect.
表达靶向CD47抑制因子的多能干细胞在多种肿瘤治疗中进行应用:Pluripotent stem cells expressing inhibitors targeting CD47 are used in a variety of tumor treatments:
选择B2M和CIITA基因敲除方案组(Aa3、Ab3)的免疫兼容细胞(MSCs)中进行测试。Select B2M and CIITA gene knockout protocol groups (Aa3, Ab3) immune-compatible cells (MSCs) for testing.
在人源化NSG小鼠肿瘤模型中,注射各组实验细胞,观察其对NIC肺癌,MM骨髓瘤,SCC胃癌的治疗的效果。为避免免疫兼容问题,所使用的免疫细胞与hPSCs源衍生物均来源于同一人的。In the humanized NSG mouse tumor model, experimental cells of each group were injected to observe the therapeutic effect on NIC lung cancer, MM myeloma, and SCC gastric cancer. To avoid immunocompatibility issues, the immune cells and hPSCs-derived derivatives used were all derived from the same human.
具体步骤包括:Specific steps include:
在人源化NSG小鼠(The Jackson Laboratory(JAX))中,对其右腋下皮下注射5×106肿瘤(NIC肺癌,MM骨髓瘤,SCC胃癌)细胞,待肿瘤长到60mm3大小时,进行尾静脉注射200uL PBS(含人免疫细胞和106的表达被外泌体包裹的CD47抑制因子的多能干细胞衍生物)进行肿瘤治疗,其中只注射含人免疫细胞的组作为对照组。20天后处死小鼠,然后比较各组之间肿瘤大小,并进行差异性统计分析。In humanized NSG mice (The Jackson Laboratory (JAX)), 5×10 6 tumor (NIC lung cancer, MM myeloma, SCC gastric cancer) cells were subcutaneously injected into the right axilla, and when the tumor grew to a size of 60 mm 3 , 200uL PBS (containing human immune cells and 10 6 pluripotent stem cell derivatives expressing exosome-encapsulated CD47 inhibitory factor) was injected into the tail vein for tumor treatment, in which only the group containing human immune cells was injected as a control group. After 20 days, the mice were sacrificed, and then the tumor size between the groups was compared and the statistical analysis of differences was performed.
结果如表12所示。The results are shown in Table 12.
表12 各实验组多能干细胞或其衍生物对多种肿瘤的抗肿瘤效果Table 12 Anti-tumor effects of pluripotent stem cells or their derivatives on various tumors in each experimental group
独立样本T检验(*p<0.01)。Independent sample t-test (*p<0.01).
通过以上实验,可以证明本发明制备的表达CD47抑制因子的干细胞或其衍生物能有效阻断CD47而起到抗肿瘤作用。Through the above experiments, it can be proved that the CD47 inhibitory factor-expressing stem cells or their derivatives prepared by the present invention can effectively block CD47 and play an anti-tumor effect.
表达靶向CD47抑制因子的多能干细胞的免疫兼容性测试:Immune Compatibility Testing of Pluripotent Stem Cells Expressing Targeted CD47 Inhibitors:
利用MSCs的低免疫源性的特点,在人源化NSG小鼠肿瘤模型中,对其进行注射能够表达CD47抑制因子(靶向CD47的shRNA)的hPSCs源免疫兼容MSCs,观察其肿瘤(MM黑色素瘤)治疗的效果。其中,所使用的免疫细胞与hPSCs源MSCs来源于为非同一人。Taking advantage of the low immunogenicity of MSCs, in a humanized NSG mouse tumor model, they were injected with hPSCs-derived immune-compatible MSCs capable of expressing CD47 inhibitor (shRNA targeting CD47), and their tumors (MM melanin) were observed. tumor) treatment effect. Among them, the used immune cells and hPSCs-derived MSCs are not from the same person.
对照组为未注射MSCs细胞的NSG小鼠肿瘤模型;The control group was the NSG mouse tumor model without MSCs injection;
加Dox组为:从注射表达抑制因子的细胞开始,持续在小鼠饮食中添加0.5mg/mL的Dox饲养小鼠,直至试验结束。Add Dox group: starting from the injection of cells expressing inhibitory factors, continue to add 0.5 mg/mL Dox to the mouse diet to feed the mice until the end of the experiment.
结果如表13所示。The results are shown in Table 13.
表13 免疫兼容分子诱导型表达组的可逆性表达测试结果Table 13 The reversible expression test results of the immune-compatible molecule-inducible expression group
独立样本T检验(*p<0.01)。Independent sample t-test (*p<0.01).
以上实验表明:仅表达抑制因子的MSCs(组2),具有低免疫源性,可以在异体内存在一定时间,所以其能够发挥一定的肿瘤治疗效果,而进行免疫兼容改造的(组3-7,包括组成型和可逆诱导型免疫兼容),其免疫兼容效果更佳,比没有经免疫兼容改造的MSCs在体内存在时间更长(或能做到长期共存),其发挥肿瘤治疗效果更佳,而组4为B2M和CIITA基因敲除组,其完全消除HLA-I和HLA-II类分子产生的影响,因此其肿瘤治疗效果最佳。但由于其组成型免疫兼容改造(基因敲入/敲除),无法在移植物产生变异或不需要时进行清除,从而有组6-9方案设定。组8-9中在进行注射表达抑制因子细胞进入小鼠的同时,对小鼠使用Dox诱导剂(一直使用),注射表达抑制因子细胞的小鼠的免疫兼容效果将被消除,其在体内存在时间与未经免疫兼容改造的MSCs相当,其肿瘤治疗效果也与未经免疫兼容改造的MSCs相当。The above experiments show that: MSCs expressing only inhibitory factors (group 2) have low immunogenicity and can exist in the allogene for a certain period of time, so they can exert a certain tumor therapeutic effect, while the immunocompatibility transformation (groups 3-7) , including constitutive and reversible inducible immune compatibility), its immune compatibility effect is better, and its existence in the body is longer than that of MSCs without immune compatibility modification (or can achieve long-term coexistence), and its tumor treatment effect is better, And
所述实施例为本发明较佳的实施方式,但本发明的实施方式并不受所述实施例的限制,其他的任何未背离本发明的精神实质与原理下所作的改变、修饰、替代、组合、简化,均应为等效的置换方式,都包含在本发明的保护范围之内。The described embodiments are preferred embodiments of the present invention, but the embodiments of the present invention are not limited by the described embodiments, and any other changes, modifications, substitutions, Combinations and simplifications should all be equivalent replacement modes, which are all included in the protection scope of the present invention.
SEQUENCE LISTINGSEQUENCE LISTING
<110> 未来智人再生医学研究院(广州)有限公司<110> Future Homo sapiens Regenerative Medicine Research Institute (Guangzhou) Co., Ltd.
王淋立Wang Linli
<120> 一种表达靶向CD47抑制因子的多能干细胞及其衍生物与应用<120> A pluripotent stem cell expressing targeting CD47 inhibitor and its derivative and application
<130><130>
<160> 103<160> 103
<170> PatentIn version 3.5<170> PatentIn version 3.5
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<210> 40<210> 40
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 40<400> 40
gatgtggaac ccacagatac a 21gatgtggaac ccacagatac a 21
<210> 41<210> 41
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 41<400> 41
gtggaaccca cagatacaga g 21gtggaaccca cagatacaga g 21
<210> 42<210> 42
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 42<400> 42
gggtagcaac tgtcaccttg a 21gggtagcaac tgtcaccttg a 21
<210> 43<210> 43
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 43<400> 43
ggatttcgtg ttccagttta a 21ggatttcgtg ttccagttta a 21
<210> 44<210> 44
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 44<400> 44
gcatgtgcta cttcaccaac g 21gcatgtgcta cttcaccaac g 21
<210> 45<210> 45
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 45<400> 45
gctcacagtc atcaattata g 21gctcacagtc atcaattata g 21
<210> 46<210> 46
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 46<400> 46
gccctgaaga cagaatgttc c 21gccctgaaga cagaatgttc c 21
<210> 47<210> 47
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 47<400> 47
gcggaccatg tgtcaactta t 21gcggaccatg tgtcaactta t 21
<210> 48<210> 48
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 48<400> 48
gcctgatagg acccatattc c 21gcctgatagg acccatattc c 21
<210> 49<210> 49
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 49<400> 49
gcatccaata gacgtcattt g 21gcatccaata gacgtcattt g 21
<210> 50<210> 50
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 50<400> 50
gcgtcactgg cacagatata a 21gcgtcactgg cacagatata a 21
<210> 51<210> 51
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 51<400> 51
ggatggattt gattatgatc c 21ggatggattt gattatgatc c 21
<210> 52<210> 52
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 52<400> 52
ggaccttgga acaatggatt g 21ggaccttgga acaatggatt g 21
<210> 53<210> 53
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 53<400> 53
gctaattctt gctgaacttc t 21gctaattctt gctgaacttc t 21
<210> 54<210> 54
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 54<400> 54
gcagttctgt tgccactctc t 21gcagttctgt tgccactctc t 21
<210> 55<210> 55
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 55<400> 55
gggagagttc atccaggaaa t 21gggagagttc atccaggaaa t 21
<210> 56<210> 56
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 56<400> 56
ggagagttca tccaggaaat t 21ggagagttca tccaggaaat t 21
<210> 57<210> 57
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 57<400> 57
gggttggttt atccaggaat a 21gggttggttt atccaggaat a 21
<210> 58<210> 58
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 58<400> 58
ggatcagaag agaagccaac g 21ggatcagaag agaagccaac g 21
<210> 59<210> 59
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 59<400> 59
ggttcaccat ccaggtgttc a 21ggttcaccat ccaggtgttc a 21
<210> 60<210> 60
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 60<400> 60
ggaggaactt tgtgaacatt c 21ggaggaactt tgtgaacatt c 21
<210> 61<210> 61
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 61<400> 61
gctgtaagaa ggatgctttc a 21gctgtaagaa ggatgctttc a 21
<210> 62<210> 62
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 62<400> 62
gctgcaggca ggattgtttc a 21gctgcaggca ggattgtttc a 21
<210> 63<210> 63
<211> 19<211> 19
<212> DNA<212> DNA
<213> human<213> human
<400> 63<400> 63
gcctcgagtt tgagagcta 19gcctcgagtt tgagagcta 19
<210> 64<210> 64
<211> 19<211> 19
<212> DNA<212> DNA
<213> human<213> human
<400> 64<400> 64
agacattctg gatgagtta 19agacattctg gatgagtta 19
<210> 65<210> 65
<211> 19<211> 19
<212> DNA<212> DNA
<213> human<213> human
<400> 65<400> 65
gggtctgtta cccaaagaa 19gggtctgtta cccaaagaa 19
<210> 66<210> 66
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 66<400> 66
ggacactggt tcaacacctg t 21ggacactggt tcaacacctg t 21
<210> 67<210> 67
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 67<400> 67
ggttcaacac ctgtgacttc a 21ggttcaacac ctgtgacttc a 21
<210> 68<210> 68
<211> 21<211> 21
<212> DNA<212> DNA
<213> human<213> human
<400> 68<400> 68
acctgtgact tcatgtgtgc g 21acctgtgact tcatgtgtgc g 21
<210> 69<210> 69
<211> 1607<211> 1607
<212> DNA<212> DNA
<213> human<213> human
<400> 69<400> 69
atgaatactc tccctgaaca ttcatgtgac gtgttgatta tcggtagcgg cgcagccgga 60atgaatactc tccctgaaca ttcatgtgac gtgttgatta tcggtagcgg cgcagccgga 60
ctttcactgg cgctacgcct ggctgaccag catcaggtca tcgttctaag taaggccggt 120ctttcactgg cgctacgcct ggctgaccag catcaggtca tcgttctaag taaggccggt 120
aacgaggttc aacattttat gcccagggcg gtattgccgc cgtgtttgat aaactgacag 180aacgaggttc aacattttat gcccagggcg gtattgccgc cgtgtttgat aaactgacag 180
cattgactcg catgtggaag acacattgat tgccggggct ggtatttgcg atcgccatgc 240cattgactcg catgtggaag acacattgat tgccggggct ggtatttgcg atcgccatgc 240
agttgaattt gtcgccagca atgcacgatc ctgtgtgcaa tggctaatcg accagggggt 300agttgaattt gtcgccagca atgcacgatc ctgtgtgcaa tggctaatcg accagggggt 300
gttgtttgat acccacattc aaccgaatgg cgaagaaagt taccatctga cccgtgaagg 360gttgtttgat acccacattc aaccgaatgg cgaagaaagt taccatctga cccgtgaagg 360
tggacatagt caccgtcgta ttcttcatgc cgccgacgcc accggtagag aagtagaaac 420tggacatagt caccgtcgta ttcttcatgc cgccgacgcc accggtagag aagtagaaac 420
cacgctggtg agcaaggcgc tgaaccatcc gaatattcgc gtgctggagc gcagcaacgc 480cacgctggtg agcaaggcgc tgaaccatcc gaatattcgc gtgctggagc gcagcaacgc 480
ggttgatctg attgtttctg acaaaattgg cctgccgggc acgcgacggg ttgttggcgc 540ggttgatctg attgtttctg acaaaattgg cctgccgggc acgcgacggg ttgttggcgc 540
gtgggtatgg aaccgtaata aagaaacggt ggaaacctgc cacgcaaaag cggtggtgct 600gtgggtatgg aaccgtaata aagaaacggt ggaaacctgc cacgcaaaag cggtggtgct 600
ggcaaccggc ggtgcgtcga aggtttatca gtacaccacc aatccggata tttcttctgg 660ggcaaccggc ggtgcgtcga aggtttatca gtacaccacc aatccggata tttcttctgg 660
cgatggcatt gctatggcgt ggcgcgcagg ctgccggttg ccaatctcga tttaatcagt 720cgatggcatt gctatggcgt ggcgcgcagg ctgccggttg ccaatctcga tttaatcagt 720
tccaccctac cgcgctatat cacccacagg cacgcaattt cctgttaaca gaagcactgc 780tccaccctac cgcgctatat cacccacagg cacgcaattt cctgttaaca gaagcactgc 780
gcggcgaggc gcttatctca agcgcccgga tggtacgcgt ttatccgatt ttgatgagcg 840gcggcgaggc gcttatctca agcgcccgga tggtacgcgt ttatccgatt ttgatgagcg 840
cggcgaactg ccccgcgcga tattgtcgcc cgcgccattg accatgaaat gaaacgcctc 900cggcgaactg ccccgcgcga tattgtcgcc cgcgccattg accatgaaat gaaacgcctc 900
ggcgcagatt gtatgttcct tgatatcagc cataagcccg ccgattttat tcgccagcat 960ggcgcagatt gtatgttcct tgatatcagc cataagcccg ccgattttat tcgccagcat 960
ttcccgatga tttatgaaaa gctgctcggg ctgggattga tctcacacaa gaaccggtac 1020ttcccgatga tttatgaaaa gctgctcggg ctgggattga tctcacacaa gaaccggtac 1020
cgattgtgcc tgctgcacat tatacctgcg gtggtgtaat ggttgatgat catgggcgta 1080cgattgtgcc tgctgcacat tatacctgcg gtggtgtaat ggttgatgat catgggcgta 1080
cggacgtcga gggcttgtat gccattggcg aggtgagtta taccggctta cacggcgcta 1140cggacgtcga gggcttgtat gccattggcg aggtgagtta taccggctta cacggcgcta 1140
accgcatggc ctcgaattca ttgctggagt gtctggtcta tggctggtcg gcggcggaag 1200accgcatggc ctcgaattca ttgctggagt gtctggtcta tggctggtcg gcggcggaag 1200
atatcaccag acgtatgcct tatgcccacg acatcagtac gttaccgccg tgggatgaaa 1260atatcaccag acgtatgcct tatgcccacg acatcagtac gttaccgccg tgggatgaaa 1260
gccgcgttga gaaccctgac gaacggtagt aattcagcat aactggcacg agctacgtct 1320gccgcgttga gaaccctgac gaacggtagt aattcagcat aactggcacg agctacgtct 1320
gtttatgtgg gattacgttg gcattgtgcg cacaacgaag cgcctggaac gcgccctgcg 1380gtttatgtgg gattacgttg gcattgtgcg cacaacgaag cgcctggaac gcgccctgcg 1380
gcggataacc atgctccaac aagaaataga cgaatattac gcccatttcc gcgtctcaaa 1440gcggataacc atgctccaac aagaaataga cgaatattac gcccatttcc gcgtctcaaa 1440
taatttgctg gagctgcgta atctggtaca ggttgccgag ttgattgttc gctgtgcaat 1500taatttgctg gagctgcgta atctggtaca ggttgccgag ttgattgttc gctgtgcaat 1500
gatgcgtaaa gagagtcggg gttgcatttc acgctggatt atccggaact gctcacccat 1560gatgcgtaaa gagagtcggg gttgcatttc acgctggatt atccggaact gctcacccat 1560
tccggtccgt cgatccttcc cccggcaatc attacataaa cagataa 1607tccggtccgt cgatccttcc cccggcaatc attacataaa cagataa 1607
<210> 70<210> 70
<211> 411<211> 411
<212> DNA<212> DNA
<213> human<213> human
<400> 70<400> 70
ggaagtggtg ccggcaccgg cggcatgtac gtgcgcttcg aggtgcccga ggacatgcag 60ggaagtggtg ccggcaccgg cggcatgtac gtgcgcttcg aggtgcccga ggacatgcag 60
aacgaggccc tgagcctgct ggaaaaagtg cgcgagagcg gcaaagtgaa gaagggcacc 120aacgaggccc tgagcctgct ggaaaaagtg cgcgagagcg gcaaagtgaa gaagggcacc 120
aacgaaacca ccaaggccgt ggaacggggc ctggccaagc tggtgtatat cgccgaggac 180aacgaaacca ccaaggccgt ggaacggggc ctggccaagc tggtgtatat cgccgaggac 180
gtggaccccc ccgagattgt ggcccatctg cccctgctgt gcgaagagaa gaacgtgccc 240gtggaccccc ccgagattgt ggcccatctg cccctgctgt gcgaagagaa gaacgtgccc 240
tacatctacg tgaagtccaa gaacgacctg ggcagagccg tgggcatcga ggtgccatgt 300tacatctacg tgaagtccaa gaacgacctg ggcagagccg tgggcatcga ggtgccatgt 300
gcctctgccg ccatcatcaa cgagggcgag ctgcggaaag aactgggcag cctggtggaa 360gcctctgccg ccatcatcaa cgagggcgag ctgcggaaag aactgggcag cctggtggaa 360
aagatcaagg gcctgcagaa gggttccggt ggatccggtt ccggacgggc t 411aagatcaagg gcctgcagaa gggttccggt ggatccggtt ccggacgggc t 411
<210> 71<210> 71
<211> 20<211> 20
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 71<400> 71
tataaggtgg tcccagctcg 20tataaggtgg tcccagctcg 20
<210> 72<210> 72
<211> 20<211> 20
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 72<400> 72
agggccggtt aatgtggctc 20agggccggtt aatgtggctc 20
<210> 73<210> 73
<211> 20<211> 20
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 73<400> 73
ctcctgttat attctagaac 20ctcctgttat attctagaac 20
<210> 74<210> 74
<211> 20<211> 20
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 74<400> 74
tttcagcatc aatgtaccct 20tttcagcatc aatgtaccct 20
<210> 75<210> 75
<211> 20<211> 20
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 75<400> 75
cgcgagcaca gctaaggcca 20cgcgagcaca gctaaggcca 20
<210> 76<210> 76
<211> 20<211> 20
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 76<400> 76
actctctctt tctggcctgg 20actctctctt tctggcctgg 20
<210> 77<210> 77
<211> 20<211> 20
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 77<400> 77
ggcactcaga agacactgat 20ggcactcaga agacactgat 20
<210> 78<210> 78
<211> 20<211> 20
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 78<400> 78
aaggtgtctg gtcggagagc 20aaggtgtctg gtcggagagc 20
<210> 79<210> 79
<211> 20<211> 20
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 79<400> 79
acccagcagg gcgtggagcc 20acccagcagg gcgtggagcc 20
<210> 80<210> 80
<211> 20<211> 20
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 80<400> 80
gtcagagccc caaggtaaaa 20gtcagagccc caaggtaaaa 20
<210> 81<210> 81
<211> 900<211> 900
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 81<400> 81
cctggacttc tccagtactt tctggctgga ttggtatctg aggctagtag gaagggcttg 60cctggacttc tccagtactt tctggctgga ttggtatctg aggctagtag gaagggcttg 60
ttcctgctgg gtagctctaa acaatgtatt catgggtagg aacagcagcc tattctgcca 120ttcctgctgg gtagctctaa acaatgtatt catgggtagg aacagcagcc tattctgcca 120
gccttatttc taaccatttt agacatttgt tagtacatgg tattttaaaa gtaaaactta 180gccttatttc taaccatttt agacatttgt tagtacatgg tattttaaaa gtaaaactta 180
atgtcttcct tttttttctc cactgtcttt ttcatagatc gagacatgta agcagcatca 240atgtcttcct ttttttttctc cactgtcttt ttcatagatc gagacatgta agcagcatca 240
tggaggtaag tttttgacct tgagaaaatg tttttgtttc actgtcctga ggactattta 300tggaggtaag tttttgacct tgagaaaatg ttttttgtttc actgtcctga ggactattta 300
tagacagctc taacatgata accctcacta tgtggagaac attgacagag taacatttta 360tagacagctc taacatgata accctcacta tgtggagaac attgacagag taacatttta 360
gcagggaaag aagaatccta cagggtcatg ttcccttctc ctgtggagtg gcatgaagaa 420gcagggaaag aagaatccta cagggtcatg ttcccttctc ctgtggagtg gcatgaagaa 420
ggtgtatggc cccaggtatg gccatattac tgaccctcta cagagagggc aaaggaactg 480ggtgtatggc cccaggtatg gccatattac tgaccctcta cagagagggc aaaggaactg 480
ccagtatggt attgcaggat aaaggcaggt ggttacccac attacctgca aggctttgat 540ccagtatggt attgcaggat aaaggcaggt ggttacccac attacctgca aggctttgat 540
ctttcttctg ccatttccac attggacatc tctgctgagg agagaaaatg aaccactctt 600ctttcttctg ccatttccac attggacatc tctgctgagg agagaaaatg aaccactctt 600
ttcctttgta taatgttgtt ttattcttca gacagaagag aggagttata cagctctgca 660ttcctttgta taatgttgtt ttattcttca gacagaagag aggagttata cagctctgca 660
gacatcccat tcctgtatgg ggactgtgtt tgcctcttag aggttcccag gccactagag 720gacatcccat tcctgtatgg ggactgtgtt tgcctcttag aggttcccag gccactagag 720
gagataaagg gaaacagatt gttataactt gatataatga tactataata gatgtaacta 780gagataaagg gaaacagatt gttataactt gatataatga tactataata gatgtaacta 780
caaggagctc cagaagcaag agagagggag gaacttggac ttctctgcat ctttagttgg 840caaggagctc cagaagcaag agagagggag gaacttggac ttctctgcat ctttagttgg 840
agtccaaagg cttttcaatg aaattctact gcccagggta cattgatgct gaaaccccat 900agtccaaagg cttttcaatg aaattctact gcccagggta cattgatgct gaaaccccat 900
<210> 82<210> 82
<211> 900<211> 900
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 82<400> 82
tcaaatctcc tgttatattc tagaacaggg aattgatttg ggagagcatc aggaaggtgg 60tcaaatctcc tgttatattc tagaacaggg aattgatttg ggagagcatc aggaaggtgg 60
atgatctgcc cagtcacact gttagtaaat tgtagagcca ggacctgaac tctaatatag 120atgatctgcc cagtcacact gttagtaaat tgtagagcca ggacctgaac tctaatatag 120
tcatgtgtta cttaatgacg gggacatgtt ctgagaaatg cttacacaaa cctaggtgtt 180tcatgtgtta cttaatgacg gggacatgtt ctgagaaatg cttacacaaa cctaggtgtt 180
gtagcctact acacgcatag gctacatggt atagcctatt gctcctagac tacaaacctg 240gtagcctact acacgcatag gctacatggt atagcctatt gctcctagac tacaaacctg 240
tacagcctgt tactgtactg aatactgtgg gcagttgtaa cacaatggta agtatttgtg 300tacagcctgt tactgtactg aatactgtgg gcagttgtaa cacaatggta agtatttgtg 300
tatctaaaca tagaagttgc agtaaaaata tgctatttta atcttatgag accactgtca 360tatctaaaca tagaagttgc agtaaaaata tgctatttta atcttatgag accactgtca 360
tatatacagt ccatcattga ccaaaacatc atatcagcat tttttcttct aagattttgg 420tatatacagt ccatcattga ccaaaacatc atatcagcat ttttttcttct aagattttgg 420
gagcaccaaa gggatacact aacaggatat actctttata atgggtttgg agaactgtct 480gagcaccaaa gggatacact aacaggatat actctttata atgggtttgg agaactgtct 480
gcagctactt cttttaaaaa ggtgatctac acagtagaaa ttagacaagt ttggtaatga 540gcagctactt cttttaaaaa ggtgatctac acagtagaaa ttagacaagt ttggtaatga 540
gatctgcaat ccaaataaaa taaattcatt gctaaccttt ttcttttctt ttcaggtttg 600gatctgcaat ccaaataaaa taaattcatt gctaaccttt ttcttttctt ttcaggtttg 600
aagatgccgc atttggattg gatgaattcc aaattctgct tgcttgcttt ttaatattga 660aagatgccgc atttggattg gatgaattcc aaattctgct tgcttgcttt ttaatattga 660
tatgcttata cacttacact ttatgcacaa aatgtagggt tataataatg ttaacatgga 720tatgcttata cacttacact ttatgcacaa aatgtagggt tataataatg ttaacatgga 720
catgatcttc tttataattc tactttgagt gctgtctcca tgtttgatgt atctgagcag 780catgatcttc tttataattc tactttgagt gctgtctcca tgtttgatgt atctgagcag 780
gttgctccac aggtagctct aggagggctg gcaacttaga ggtggggagc agagaattct 840gttgctccac aggtagctct aggagggctg gcaacttaga ggtggggagc agagaattct 840
cttatccaac atcaacatct tggtcagatt tgaactcttc aatctcttgc actcaaagct 900cttatccaac atcaacatct tggtcagatt tgaactcttc aatctcttgc actcaaagct 900
<210> 83<210> 83
<211> 900<211> 900
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 83<400> 83
cttgacaagt ctcctgctcc tcactatgaa gatcactgtc ccccagccct gtgctccccg 60cttgacaagt ctcctgctcc tcactatgaa gatcactgtc ccccagccct gtgctccccg 60
cactgtgctg cacgtccacc tccattccac tgcccctccc atccccccat cttgatagca 120cactgtgctg cacgtccacc tccattccac tgcccctccc atccccccat cttgatagca 120
cccttcccag gtgtcaagct gcccctccta gagtgtcctg cctaaacccc ctctcctggc 180cccttcccag gtgtcaagct gcccctccta gagtgtcctg cctaaacccc ctctcctggc 180
tcctcccgct acagcatgtt ctctgaggac actaaccacg ctggaccttg aactgggtac 240tcctcccgct acagcatgtt ctctgaggac actaaccacg ctggaccttg aactgggtac 240
ttgtggacac agctcttctc caggctgtat cccatgagcc tcagcatcct ggcacccggc 300ttgtggacac agctcttctc caggctgtat cccatgagcc tcagcatcct ggcacccggc 300
ccctgctggt tcagggttgg cccctgcccg gctgcggaat gaaccacatc ttgctctgct 360ccctgctggt tcagggttgg cccctgcccg gctgcggaat gaaccacatc ttgctctgct 360
gacagacaca ggcccggctc caggctcctt tagcgcccag ttgggtggat gcctggtggc 420gacagacaca ggcccggctc caggctcctt tagcgcccag ttgggtggat gcctggtggc 420
agctgcggtc cacccaggag ccccgaggcc ttctctgaag gacattgcgg acagccacgg 480agctgcggtc cacccaggag ccccgaggcc ttctctgaag gacattgcgg acagccacgg 480
ccaggccaga gggagtgaca gaggcagccc cattctgcct gcccaggccc ctgccaccct 540ccaggccaga gggagtgaca gaggcagccc cattctgcct gcccaggccc ctgccaccct 540
ggggagaaag tacttctttt tttttatttt tagacagagt ctcactgttg cccaggctgg 600ggggagaaag tacttctttt tttttatttt tagacagagt ctcactgttg cccaggctgg 600
cgtgcagtgg tgcgatctgg gttcactgca acctccgcct cttgggttca agcgattctt 660cgtgcagtgg tgcgatctgg gttcactgca acctccgcct cttgggttca agcgattctt 660
ctgcttcagc ctcccgagta gctgggacta caggcaccca ccatcatgtc tggctaattt 720ctgcttcagc ctcccgagta gctgggacta caggcaccca ccatcatgtc tggctaattt 720
ttcattttta gtagagacag ggttttgcca tgttggccag gctggtctca aactcttgac 780ttcattttta gtagagacag ggttttgcca tgttggccag gctggtctca aactcttgac 780
ctcaggtgat ccacccacct cagcctccca aagtgctggg attacaagcg tgagccactg 840ctcaggtgat ccacccacct cagcctccca aagtgctggg attacaagcg tgagccactg 840
caccgggcca cagagaaagt acttctccac cctgctctcc gaccagacac cttgacaggg 900caccgggcca cagagaaagt acttctccac cctgctctcc gaccagacac cttgacaggg 900
<210> 84<210> 84
<211> 900<211> 900
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 84<400> 84
cacaccgggc actcagaaga cactgatggg caacccccag cctgctaatt ccccagattg 60cacaccgggc actcagaaga cactgatggg caacccccag cctgctaatt ccccagattg 60
caacaggctg ggcttcagtg gcagctgctt ttgtctatgg gactcaatgc actgacattg 120caacaggctg ggcttcagtg gcagctgctt ttgtctatgg gactcaatgc actgacattg 120
ttggccaaag ccaaagctag gcctggccag atgcaccagc ccttagcagg gaaacagcta 180ttggccaaag ccaaagctag gcctggccag atgcaccagc ccttagcagg gaaacagcta 180
atgggacact aatggggcgg tgagagggga acagactgga agcacagctt catttcctgt 240atgggacact aatggggcgg tgagagggga acagactgga agcacagctt catttcctgt 240
gtcttttttc actacattat aaatgtctct ttaatgtcac aggcaggtcc agggtttgag 300gtctttttttc actacattat aaatgtctct ttaatgtcac aggcaggtcc agggtttgag 300
ttcataccct gttaccattt tggggtaccc actgctctgg ttatctaata tgtaacaagc 360ttcataccct gttaccattt tggggtaccc actgctctgg ttatctaata tgtaacaagc 360
caccccaaat catagtggct taaaacaaca ctcacattta ttctgctcac atatctgtca 420caccccaaat catagtggct taaaacaaca ctcacattta ttctgctcac atatctgtca 420
tttgagcagg gctcagcggg gacagctcct tctgtcctac tctgtgtcag gtggggcagc 480tttgagcagg gctcagcggg gacagctcct tctgtcctac tctgtgtcag gtggggcagc 480
ttgagggttg ggctggtgtc acctgaagac tcattcttct gtacgtctga caggcaatgc 540ttgagggttg ggctggtgtc acctgaagac tcattcttct gtacgtctga caggcaatgc 540
tggctgttgg ctgggggcct cagtgccact acggaatagt tggctaggac ccctccatgt 600tggctgttgg ctgggggcct cagtgccact acggaatagt tggctaggac ccctccatgt 600
gggctagttg ggcttcctca tagtatggtg gctgggttgg agggtgtccc aaaaagaaag 660gggctagttg ggcttcctca tagtatggtg gctgggttgg agggtgtccc aaaaagaaag 660
gaggggatag agagagacca cttttcataa cctagcctta gaagtcacac agtattactt 720gaggggatag agagagacca cttttcataa cctagcctta gaagtcacac agtattactt 720
ctgctacata tatatgtttt aagaggcagg gtctcactct gtcgcccagt ctggaatgca 780ctgctacata tatatgtttt aagaggcagg gtctcactct gtcgcccagt ctggaatgca 780
gtggtatgat cacggctcac tgcagcctca acctcctggg ctaagtgatc ctcccacctc 840gtggtatgat cacggctcac tgcagcctca acctcctggg ctaagtgatc ctcccacctc 840
agcctcccga atagctggga ctacaggtgt gagtcaccaa gcccagttaa tctttagttt 900agcctcccga atagctggga ctacaggtgt gagtcaccaa gcccagttaa tctttagttt 900
<210> 85<210> 85
<211> 804<211> 804
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 85<400> 85
tgctttctct gacctgcatt ctctcccctg ggcctgtgcc gctttctgtc tgcagcttgt 60tgctttctct gacctgcatt ctctcccctg ggcctgtgcc gctttctgtc tgcagcttgt 60
ggcctgggtc acctctacgg ctggcccaga tccttccctg ccgcctcctt caggttccgt 120ggcctgggtc acctctacgg ctggcccaga tccttccctg ccgcctcctt caggttccgt 120
cttcctccac tccctcttcc ccttgctctc tgctgtgttg ctgcccaagg atgctctttc 180cttcctccac tccctcttcc ccttgctctc tgctgtgttg ctgcccaagg atgctctttc 180
cggagcactt ccttctcggc gctgcaccac gtgatgtcct ctgagcggat cctccccgtg 240cggagcactt ccttctcggc gctgcaccac gtgatgtcct ctgagcggat cctccccgtg 240
tctgggtcct ctccgggcat ctctcctccc tcacccaacc ccatgccgtc ttcactcgct 300tctgggtcct ctccgggcat ctctcctccc tcacccaacc ccatgccgtc ttcactcgct 300
gggttccctt ttccttctcc ttctggggcc tgtgccatct ctcgtttctt aggatggcct 360gggttccctt ttccttctcc ttctggggcc tgtgccatct ctcgtttctt aggatggcct 360
tctccgacgg atgtctccct tgcgtcccgc ctccccttct tgtaggcctg catcatcacc 420tctccgacgg atgtctccct tgcgtcccgc ctccccttct tgtaggcctg catcatcacc 420
gtttttctgg acaaccccaa agtaccccgt ctccctggct ttagccacct ctccatcctc 480gtttttctgg acaaccccaa agtaccccgt ctccctggct ttagccacct ctccatcctc 480
ttgctttctt tgcctggaca ccccgttctc ctgtggattc gggtcacctc tcactccttt 540ttgctttctt tgcctggaca ccccgttctc ctgtggattc gggtcacctc tcactccttt 540
catttgggca gctcccctac cccccttacc tctctagtct gtgctagctc ttccagcccc 600catttgggca gctcccctac cccccttacc tctctagtct gtgctagctc ttccagcccc 600
ctgtcatggc atcttccagg ggtccgagag ctcagctagt cttcttcctc caacccgggc 660ctgtcatggc atcttccagg ggtccgagag ctcagctagt cttcttcctc caacccgggc 660
ccctatgtcc acttcaggac agcatgtttg ctgcctccag ggatcctgtg tccccgagct 720ccctatgtcc acttcaggac agcatgtttg ctgcctccag ggatcctgtg tccccgagct 720
gggaccacct tatattccca gggccggtta atgtggctct ggttctgggt acttttatct 780gggaccacct tatattccca gggccggtta atgtggctct ggttctgggt acttttatct 780
gtcccctcca ccccacagtg gggc 804gtcccctcca ccccacagtg gggc 804
<210> 86<210> 86
<211> 837<211> 837
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 86<400> 86
actagggaca ggattggtga cagaaaagcc ccatccttag gcctcctcct tcctagtctc 60actagggaca ggattggtga cagaaaagcc ccatccttag gcctcctcct tcctagtctc 60
ctgatattgg gtctaacccc cacctcctgt taggcagatt ccttatctgg tgacacaccc 120ctgatattgg gtctaacccc cacctcctgt taggcagatt ccttatctgg tgacacaccc 120
ccatttcctg gagccatctc tctccttgcc agaacctcta aggtttgctt acgatggagc 180ccatttcctg gagccatctc tctccttgcc agaacctcta aggtttgctt acgatggagc 180
cagagaggat cctgggaggg agagcttggc agggggtggg agggaagggg gggatgcgtg 240cagagaggat cctgggaggg agagcttggc agggggtggg agggaagggg gggatgcgtg 240
acctgcccgg ttctcagtgg ccaccctgcg ctaccctctc ccagaacctg agctgctctg 300acctgcccgg ttctcagtgg ccaccctgcg ctaccctctc ccagaacctg agctgctctg 300
acgcggccgt ctggtgcgtt tcactgatcc tggtgctgca gcttccttac acttcccaag 360acgcggccgt ctggtgcgtt tcactgatcc tggtgctgca gcttccttac acttcccaag 360
aggagaagca gtttggaaaa acaaaatcag aataagttgg tcctgagttc taactttggc 420aggagaagca gtttggaaaa acaaaatcag aataagttgg tcctgagttc taactttggc 420
tcttcacctt tctagtcccc aatttatatt gttcctccgt gcgtcagttt tacctgtgag 480tcttcacctt tctagtcccc aatttattatt gttcctccgt gcgtcagttt tacctgtgag 480
ataaggccag tagccagccc cgtcctggca gggctgtggt gaggaggggg gtgtccgtgt 540ataaggccag tagccagccc cgtcctggca gggctgtggt gaggaggggg gtgtccgtgt 540
ggaaaactcc ctttgtgaga atggtgcgtc ctaggtgttc accaggtcgt ggccgcctct 600ggaaaactcc ctttgtgaga atggtgcgtc ctaggtgttc accaggtcgt ggccgcctct 600
actccctttc tctttctcca tccttctttc cttaaagagt ccccagtgct atctgggaca 660actccctttc tctttctcca tccttctttc cttaaagagt ccccagtgct atctgggaca 660
tattcctccg cccagagcag ggtcccgctt ccctaaggcc ctgctctggg cttctgggtt 720tattcctccg cccagagcag ggtcccgctt ccctaaggcc ctgctctggg cttctgggtt 720
tgagtccttg gcaagcccag gagaggcgct caggcttccc tgtccccctt cctcgtccac 780tgagtccttg gcaagcccag gagaggcgct caggcttccc tgtccccctt cctcgtccac 780
catctcatgc ccctggctct cctgcccctt ccctacaggg gttcctggct ctgctct 837catctcatgc ccctggctct cctgcccctt ccctacaggg gttcctggct ctgctct 837
<210> 87<210> 87
<211> 253<211> 253
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 87<400> 87
gagggcctat ttcccatgat tccttcatat ttgcatatac gatacaaggc tgttagagag 60gagggcctat ttcccatgat tccttcatat ttgcatatac gatacaaggc tgttagagag 60
ataattggaa ttaatttgac tgtaaacaca aagatattag tacaaaatac gtgacgtaga 120ataattggaa ttaatttgac tgtaaacaca aagatattag tacaaaatac gtgacgtaga 120
aagtaataat ttcttgggta gtttgcagtt ttaaaattat gttttaaaat ggactatcat 180aagtaataat ttcttgggta gtttgcagtt ttaaaattat gttttaaaat ggactatcat 180
atgcttaccg taacttgaaa gtatttcgat ttcttggctt tatatatctt gtggaaagga 240atgcttaccg taacttgaaa gtatttcgat ttcttggctt tatatatctt gtggaaagga 240
cgctagcgcc acc 253cgctagcgcc acc 253
<210> 88<210> 88
<211> 686<211> 686
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 88<400> 88
gagggcctat ttcccatgat tccttcatat ttgcatatac gatacaaggc tgttagagag 60gagggcctat ttcccatgat tccttcatat ttgcatatac gatacaaggc tgttagagag 60
ataattggaa ttaatttgac tgtaaacaca aagatattag tacaaaatac gtgacgtaga 120ataattggaa ttaatttgac tgtaaacaca aagatattag tacaaaatac gtgacgtaga 120
aagtaataat ttcttgggta gtttgcagtt ttaaaattat gttttaaaat ggactatcat 180aagtaataat ttcttgggta gtttgcagtt ttaaaattat gttttaaaat ggactatcat 180
atgcttaccg taacttgaaa gtatttcgat ttcttggctt tatatatctt gtggaaagga 240atgcttaccg taacttgaaa gtatttcgat ttcttggctt tatatatctt gtggaaagga 240
ctttaccact ccctatcagt gatagagaaa agtgaaagtc gagtttacca ctccctatca 300ctttaccact ccctatcagt gatagagaaa agtgaaagtc gagtttacca ctccctatca 300
gtgatagaga aaagtgaaag tcgagtttac cactccctat cagtgataga gaaaagtgaa 360gtgatagaga aaagtgaaag tcgagtttac cactccctat cagtgataga gaaaagtgaa 360
agtcgagttt accactccct atcagtgata gagaaaagtg aaagtcgagt ttaccactcc 420agtcgagttt accactccct atcagtgata gagaaaagtg aaagtcgagt ttaccactcc 420
ctatcagtga tagagaaaag tgaaagtcga gtttaccact ccctatcagt gatagagaaa 480ctatcagtga tagagaaaag tgaaagtcga gtttaccact ccctatcagt gatagagaaa 480
agtgaaagtc gagtttacca ctccctatca gtgatagaga aaagtgaaag tcgagctcgg 540agtgaaagtc gagtttacca ctccctatca gtgatagaga aaagtgaaag tcgagctcgg 540
tacccgggtc gaggtaggcg tgtacggtgg gaggcctata taagcagagc tcgtttagtg 600tacccgggtc gaggtaggcg tgtacggtgg gaggcctata taagcagagc tcgtttagtg 600
aaccgtcaga tcgcctggag acgccatcca cgctgttttg acctccatag aagacaccgg 660aaccgtcaga tcgcctggag acgccatcca cgctgttttg acctccatag aagacaccgg 660
gaccgatcca gcctgctagc gccacc 686gaccgatcca gcctgctagc gccacc 686
<210> 89<210> 89
<211> 22<211> 22
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 89<400> 89
ccatagctca gtctggtcta tc 22ccatagctca gtctggtcta tc 22
<210> 90<210> 90
<211> 22<211> 22
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 90<400> 90
ctcttcgtcc agatcatcct ga 22ctcttcgtcc agatcatcct ga 22
<210> 91<210> 91
<211> 22<211> 22
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 91<400> 91
ccatagctca gtctggtcta tc 22ccatagctca gtctggtcta tc 22
<210> 92<210> 92
<211> 20<211> 20
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 92<400> 92
cacaccttgc cgatgtcgag 20cacaccttgc cgatgtcgag 20
<210> 93<210> 93
<211> 24<211> 24
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 93<400> 93
gcactgaacg aacatctcaa gaag 24gcactgaacg aacatctcaa gaag 24
<210> 94<210> 94
<211> 22<211> 22
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 94<400> 94
ctcttcgtcc agatcatcct ga 22ctcttcgtcc agatcatcct ga 22
<210> 95<210> 95
<211> 24<211> 24
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 95<400> 95
gcactgaacg aacatctcaa gaag 24gcactgaacg aacatctcaa gaag 24
<210> 96<210> 96
<211> 20<211> 20
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 96<400> 96
cacaccttgc cgatgtcgag 20cacaccttgc cgatgtcgag 20
<210> 97<210> 97
<211> 22<211> 22
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 97<400> 97
tgctccgggt ttgtctcaga tg 22tgctccgggt ttgtctcaga tg 22
<210> 98<210> 98
<211> 22<211> 22
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 98<400> 98
ctcttcgtcc agatcatcct ga 22ctcttcgtcc agatcatcct ga 22
<210> 99<210> 99
<211> 22<211> 22
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 99<400> 99
tgctccgggt ttgtctcaga tg 22tgctccgggt ttgtctcaga tg 22
<210> 100<210> 100
<211> 20<211> 20
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 100<400> 100
cacaccttgc cgatgtcgag 20cacaccttgc cgatgtcgag 20
<210> 101<210> 101
<211> 590<211> 590
<212> DNA<212> DNA
<213> 人工序列<213> Artificial sequences
<400> 101<400> 101
cccctctccc tccccccccc ctaacgttac tggccgaagc cgcttggaat aaggccggtg 60cccctctccc tccccccccc ctaacgttac tggccgaagc cgcttggaat aaggccggtg 60
tgcgtttgtc tatatgttat tttccaccat attgccgtct tttggcaatg tgagggcccg 120tgcgtttgtc tatatgttat tttccaccat attgccgtct tttggcaatg tgagggcccg 120
gaaacctggc cctgtcttct tgacgagcat tcctaggggt ctttcccctc tcgccaaagg 180gaaacctggc cctgtcttct tgacgagcat tcctaggggt ctttcccctc tcgccaaagg 180
aatgcaaggt ctgttgaatg tcgtgaagga agcagttcct ctggaagctt cttgaagaca 240aatgcaaggt ctgttgaatg tcgtgaagga agcagttcct ctggaagctt cttgaagaca 240
aacaacgtct gtagcgaccc tttgcaggca gcggaacccc ccacctggcg acaggtgcct 300aacaacgtct gtagcgaccc tttgcaggca gcggaacccc ccacctggcg acaggtgcct 300
ctgcggccaa aagccacgtg tataagatac acctgcaaag gcggcacaac cccagtgcca 360ctgcggccaa aagccacgtg tataagatac acctgcaaag gcggcacaac cccagtgcca 360
cgttgtgagt tggatagttg tggaaagagt caaatggctc tcctcaagcg tattcaacaa 420cgttgtgagt tggatagttg tggaaagagt caaatggctc tcctcaagcg tattcaacaa 420
ggggctgaag gatgcccaga aggtacccca ttgtatggga tctgatctgg ggcctcggtg 480ggggctgaag gatgcccaga aggtacccca ttgtatggga tctgatctgg ggcctcggtg 480
cacatgcttt acatgtgttt agtcgaggtt aaaaaaacgt ctaggccccc cgaaccacgg 540cacatgcttt acatgtgttt agtcgaggtt aaaaaaacgt ctaggccccc cgaaccacgg 540
ggacgtggtt ttcctttgaa aaacacgatg ataatatggc cacaaccatg 590ggacgtggtt ttcctttgaa aaacacgatg ataatatggc cacaaccatg 590
<210> 102<210> 102
<211> 21<211> 21
<212> DNA<212> DNA
<213> Caenorhabditis elegans<213> Caenorhabditis elegans
<400> 102<400> 102
ttgtactaca caaaagtact g 21ttgtactaca caaaagtact g 21
<210> 103<210> 103
<211> 24<211> 24
<212> DNA<212> DNA
<213> Caenorhabditis elegans<213> Caenorhabditis elegans
<400> 103<400> 103
tcacaacctc ctagaaagag taga 24tcacaacctc ctagaaagag taga 24
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