CN114480494B - Protein probes and their use in detecting BACE1 activity - Google Patents
Protein probes and their use in detecting BACE1 activity Download PDFInfo
- Publication number
- CN114480494B CN114480494B CN202210124739.8A CN202210124739A CN114480494B CN 114480494 B CN114480494 B CN 114480494B CN 202210124739 A CN202210124739 A CN 202210124739A CN 114480494 B CN114480494 B CN 114480494B
- Authority
- CN
- China
- Prior art keywords
- bace1
- mcherry
- nucleotide sequence
- seq
- protein
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Active
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/85—Vectors or expression systems specially adapted for eukaryotic hosts for animal cells
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/43504—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from invertebrates
- C07K14/43595—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from invertebrates from coelenteratae, e.g. medusae
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/34—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving hydrolase
- C12Q1/37—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving hydrolase involving peptidase or proteinase
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
- G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
- G01N21/64—Fluorescence; Phosphorescence
- G01N21/6428—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes"
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2319/00—Fusion polypeptide
- C07K2319/01—Fusion polypeptide containing a localisation/targetting motif
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2800/00—Nucleic acids vectors
- C12N2800/10—Plasmid DNA
- C12N2800/106—Plasmid DNA for vertebrates
- C12N2800/107—Plasmid DNA for vertebrates for mammalian
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
- G01N2333/90—Enzymes; Proenzymes
- G01N2333/914—Hydrolases (3)
- G01N2333/948—Hydrolases (3) acting on peptide bonds (3.4)
- G01N2333/95—Proteinases, i.e. endopeptidases (3.4.21-3.4.99)
- G01N2333/964—Proteinases, i.e. endopeptidases (3.4.21-3.4.99) derived from animal tissue
- G01N2333/96425—Proteinases, i.e. endopeptidases (3.4.21-3.4.99) derived from animal tissue from mammals
- G01N2333/96427—Proteinases, i.e. endopeptidases (3.4.21-3.4.99) derived from animal tissue from mammals in general
- G01N2333/9643—Proteinases, i.e. endopeptidases (3.4.21-3.4.99) derived from animal tissue from mammals in general with EC number
- G01N2333/96472—Aspartic endopeptidases (3.4.23)
Landscapes
- Health & Medical Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Genetics & Genomics (AREA)
- Zoology (AREA)
- Engineering & Computer Science (AREA)
- Wood Science & Technology (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- Biophysics (AREA)
- General Engineering & Computer Science (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Immunology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Microbiology (AREA)
- Biomedical Technology (AREA)
- Analytical Chemistry (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Pathology (AREA)
- Optics & Photonics (AREA)
- Plant Pathology (AREA)
- Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
- General Physics & Mathematics (AREA)
- Tropical Medicine & Parasitology (AREA)
- Toxicology (AREA)
- Gastroenterology & Hepatology (AREA)
- Medicinal Chemistry (AREA)
- Peptides Or Proteins (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
本发明涉及生物医药领域,尤其涉及蛋白探针以及其在检测BACE1活性中的应用。本发明提供了表达载体,上述表达载体包括编码如下蛋白片段的基因,上述蛋白片段包括:mCherry‑N片段,mCherry‑C片段,VAMP7,BACE1识别多肽。本发明提供了一种直观,动态,简便,可操作性强,可在生理条件下实施,可用于检测活细胞中BACE1活性的荧光蛋白探针。The present invention relates to the field of biomedicine, and in particular to a protein probe and its application in detecting BACE1 activity. The present invention provides an expression vector, the expression vector includes a gene encoding the following protein fragments, the protein fragments include: mCherry-N fragment, mCherry-C fragment, VAMP7, BACE1 recognition polypeptide. The present invention provides a fluorescent protein probe that is intuitive, dynamic, simple, highly operable, can be implemented under physiological conditions, and can be used to detect BACE1 activity in living cells.
Description
技术领域Technical Field
本发明涉及生物医药领域,尤其涉及蛋白探针以及其在检测BACE1活性中的应用。The present invention relates to the field of biomedicine, and in particular to a protein probe and an application thereof in detecting BACE1 activity.
背景技术Background technique
β分泌酶(BACE1)是一种天冬氨酸蛋白酶,主要表达在内体上,在阿尔兹海默病(AD)的发病机制中起关键作用。Vassar等人发现BACE1通过介导淀粉样蛋白前体蛋白(APP)在β位点的酶切,促进生成了包含99个氨基酸残基的C末端片段(β-CTF)。随后,β-CTF经过γ分泌酶的进一步酶切形成并释放淀粉样蛋白β(Aβ)。Aβ易在脑组织中积聚,导致聚集物和不溶性纤维的产生,成为AD发生的重要原因。总的来说,BACE1是Aβ形成过程中的关键酶,与AD的发生发展有着密切的联系。因此,BACE1可以作为AD药物开发的重要靶点,而开发用于活细胞BACE1活性测定的高选择性和灵敏度的强大工具对于AD特异性药物的筛选是至关重要的。β-Secretase (BACE1) is an aspartic protease that is mainly expressed on endosomes and plays a key role in the pathogenesis of Alzheimer's disease (AD). Vassar et al. found that BACE1 promotes the generation of a C-terminal fragment (β-CTF) containing 99 amino acid residues by mediating the cleavage of amyloid precursor protein (APP) at the β site. Subsequently, β-CTF is further cleaved by γ-secretase to form and release amyloid β (Aβ). Aβ easily accumulates in brain tissue, leading to the production of aggregates and insoluble fibers, becoming an important cause of AD. In general, BACE1 is a key enzyme in the formation of Aβ and is closely related to the occurrence and development of AD. Therefore, BACE1 can be used as an important target for AD drug development, and the development of a powerful tool with high selectivity and sensitivity for measuring BACE1 activity in living cells is crucial for the screening of AD-specific drugs.
目前对BACE1活性的检测大多数依赖化学合成的肽底物,比如Sigma-Aldrich公司在售BACE1活性检测试剂盒,但该试剂盒需要首先将细胞裂解,使用蛋白裂解液进行检测,无法还原真实的生理环境。在现有技术中,BACE1活性检测的探针合成复杂,数据处理繁琐,仪器要求高,可操作性低。Currently, most detection of BACE1 activity relies on chemically synthesized peptide substrates, such as the BACE1 activity detection kit sold by Sigma-Aldrich, but the kit requires cells to be lysed first and then tested using protein lysate, which cannot restore the real physiological environment. In the existing technology, the synthesis of probes for BACE1 activity detection is complex, data processing is cumbersome, instrument requirements are high, and operability is low.
因此,提供蛋白探针以及其在检测BACE1活性中的应用具有重要的现实意义。Therefore, providing a protein probe and its application in detecting BACE1 activity has important practical significance.
发明内容Summary of the invention
有鉴于此,本发明提供了蛋白探针以及其在检测BACE1活性中的应用。本发明的目的是开发一种直观,动态,简便,可操作性强,可在生理条件下实施,可用于检测活细胞中BACE1活性的荧光探针。In view of this, the present invention provides a protein probe and its application in detecting BACE1 activity. The purpose of the present invention is to develop a fluorescent probe that is intuitive, dynamic, simple, highly operable, can be implemented under physiological conditions, and can be used to detect BACE1 activity in living cells.
为了实现上述发明目的,本发明提供以下技术方案:In order to achieve the above-mentioned invention object, the present invention provides the following technical solutions:
本发明提供了表达载体,上述表达载体包括编码如下蛋白片段的基因,上述蛋白片段包括:The present invention provides an expression vector, wherein the expression vector comprises a gene encoding the following protein fragments, wherein the protein fragments comprise:
mCherry-N片段;mCherry-N fragment;
mCherry-C片段;mCherry-C fragment;
VAMP7;VAMP7;
BACE1识别多肽。BACE1 recognizes peptides.
在本发明的一些具体实施方案中,所述mCherry-N片段为mCherry氨基酸序列的1-132,所述mCherry-C片段为mCherry氨基酸序列的142-236。In some specific embodiments of the present invention, the mCherry-N fragment is 1-132 of the mCherry amino acid sequence, and the mCherry-C fragment is 142-236 of the mCherry amino acid sequence.
在本发明的一些实施方案中,133-141,133-140,134-140代表不同长度的上述的所述BACE1识别多肽,依次包括如下氨基酸序列:EVNLDAEFR,EVNLDAEF,VNLDAEF。In some embodiments of the present invention, 133-141, 133-140, 134-140 represent the above-mentioned BACE1 recognition polypeptides of different lengths, which include the following amino acid sequences in sequence: EVNLDAEFR, EVNLDAEF, VNLDAEF.
在本发明的一些实施方案中,上述BACE1识别多肽包括:133-141EVNLDAEFR。In some embodiments of the present invention, the above-mentioned BACE1 recognition polypeptide includes: 133-141EVNLDAEFR.
在本发明的一些实施方案中,编码上述133-141(EVNLDAEFR)识别多肽具有:In some embodiments of the present invention, the polypeptide encoding the above 133-141 (EVNLDAEFR) recognition polypeptide has:
(16)、如SEQ ID NO:16所示的核苷酸序列;或(16), the nucleotide sequence shown in SEQ ID NO: 16; or
(17)、与(16)所示的核苷酸序列编码相同蛋白质,但因遗传密码的简并性而与(16)所示的核苷酸序列不同的核苷酸序列;或(17) a nucleotide sequence that encodes the same protein as the nucleotide sequence shown in (16) but is different from the nucleotide sequence shown in (16) due to the degeneracy of the genetic code; or
(18)、与(16)或(17)所示的核苷酸序列经取代、缺失或添加一个或多个核苷酸序列获得的核苷酸序列,且与(16)或(17)所示的核苷酸序列功能相同或相似的核苷酸序列。(18) A nucleotide sequence obtained by replacing, deleting or adding one or more nucleotide sequences to the nucleotide sequence shown in (16) or (17), and a nucleotide sequence that has the same or similar function as the nucleotide sequence shown in (16) or (17).
在本发明的一些实施方案中,上述BACE1识别多肽包括:133-140EVNLDAEF。In some embodiments of the present invention, the above-mentioned BACE1 recognition polypeptide includes: 133-140EVNLDAEF.
在本发明的一些实施方案中,编码上述133-140(EVNLDAEF)识别多肽具有:In some embodiments of the present invention, the polypeptide encoding the above 133-140 (EVNLDAEF) recognition polypeptide has:
(19)、如SEQ ID NO:17所示的核苷酸序列;或(19), the nucleotide sequence shown in SEQ ID NO: 17; or
(20)、与(19)所示的核苷酸序列编码相同蛋白质,但因遗传密码的简并性而与(19)所示的核苷酸序列不同的核苷酸序列;或(20) A nucleotide sequence that encodes the same protein as the nucleotide sequence shown in (19) but is different from the nucleotide sequence shown in (19) due to the degeneracy of the genetic code; or
(21)、与(19)或(20)所示的核苷酸序列经取代、缺失或添加一个或多个核苷酸序列获得的核苷酸序列,且与(19)或(20)所示的核苷酸序列功能相同或相似的核苷酸序列。(21) A nucleotide sequence obtained by replacing, deleting or adding one or more nucleotide sequences to the nucleotide sequence shown in (19) or (20), and a nucleotide sequence having the same or similar function as the nucleotide sequence shown in (19) or (20).
在本发明的一些实施方案中,上述BACE1识别多肽包括:134-140VNLDAEF。In some embodiments of the present invention, the above-mentioned BACE1 recognition polypeptide includes: 134-140VNLDAEF.
在本发明的一些实施方案中,编码上述134-140(VNLDAEF)识别多肽具有:In some embodiments of the present invention, the polypeptide encoding the above 134-140 (VNLDAEF) recognition polypeptide has:
(22)、如SEQ ID NO:18所示的核苷酸序列;或(22), the nucleotide sequence shown in SEQ ID NO: 18; or
(23)、与(22)所示的核苷酸序列编码相同蛋白质,但因遗传密码的简并性而与(22)所示的核苷酸序列不同的核苷酸序列;或(23) a nucleotide sequence that encodes the same protein as the nucleotide sequence shown in (22) but is different from the nucleotide sequence shown in (22) due to the degeneracy of the genetic code; or
(24)、与(22)或(23)所示的核苷酸序列经取代、缺失或添加一个或多个核苷酸序列获得的核苷酸序列,且与(22)或(23)所示的核苷酸序列功能相同或相似的核苷酸序列。(24) A nucleotide sequence obtained by replacing, deleting or adding one or more nucleotide sequences to the nucleotide sequence shown in (22) or (23), and a nucleotide sequence that has the same or similar function as the nucleotide sequence shown in (22) or (23).
在本发明的一些实施方案中,上述表达载体中上述mCherry-N端即为mCherry氨基酸序列的1-132,mCherry-C端即为mCherry氨基酸序列的142-236。In some embodiments of the present invention, the mCherry-N-terminus in the expression vector is 1-132 of the mCherry amino acid sequence, and the mCherry-C-terminus is 142-236 of the mCherry amino acid sequence.
在本发明的一些实施方案中,上述表达载体中编码上述mCherry-N片段的核酸具有:In some embodiments of the present invention, the nucleic acid encoding the mCherry-N fragment in the expression vector has:
(1)、如SEQ ID NO:13所示的核苷酸序列;或(1), the nucleotide sequence shown in SEQ ID NO: 13; or
(2)、与(1)所示的核苷酸序列编码相同蛋白质,但因遗传密码的简并性而与(1)所示的核苷酸序列不同的核苷酸序列;或(2) a nucleotide sequence that encodes the same protein as the nucleotide sequence shown in (1) but is different from the nucleotide sequence shown in (1) due to the degeneracy of the genetic code; or
(3)、与(1)或(2)所示的核苷酸序列经取代、缺失或添加一个或多个核苷酸序列获得的核苷酸序列,且与(1)或(2)所示的核苷酸序列功能相同或相似的核苷酸序列;和/或(3) a nucleotide sequence obtained by replacing, deleting or adding one or more nucleotide sequences to the nucleotide sequence shown in (1) or (2), and having the same or similar functions as the nucleotide sequence shown in (1) or (2); and/or
编码上述mCherry-C片段的核酸具有:The nucleic acid encoding the above mCherry-C fragment has:
(4)、如SEQ ID NO:14所示的核苷酸序列;或(4) the nucleotide sequence shown in SEQ ID NO: 14; or
(5)、与(4)所示的核苷酸序列编码相同蛋白质,但因遗传密码的简并性而与(4)所示的核苷酸序列不同的核苷酸序列;或(5) a nucleotide sequence that encodes the same protein as the nucleotide sequence shown in (4) but is different from the nucleotide sequence shown in (4) due to the degeneracy of the genetic code; or
(6)、与(4)或(5)所示的核苷酸序列经取代、缺失或添加一个或多个核苷酸序列获得的核苷酸序列,且与(4)或(5)所示的核苷酸序列功能相同或相似的核苷酸序列;和/或(6) a nucleotide sequence obtained by replacing, deleting or adding one or more nucleotide sequences to the nucleotide sequence shown in (4) or (5), and a nucleotide sequence having the same or similar function as the nucleotide sequence shown in (4) or (5); and/or
编码上述VAMP7的核酸具有:The nucleic acid encoding the above VAMP7 has:
(7)、如SEQ ID NO:15所示的核苷酸序列;或(7) the nucleotide sequence shown in SEQ ID NO: 15; or
(8)、与(7)所示的核苷酸序列编码相同蛋白质,但因遗传密码的简并性而与(7)所示的核苷酸序列不同的核苷酸序列;或(8) a nucleotide sequence that encodes the same protein as the nucleotide sequence shown in (7) but is different from the nucleotide sequence shown in (7) due to the degeneracy of the genetic code; or
(9)、与(7)或(8)所示的核苷酸序列经取代、缺失或添加一个或多个核苷酸序列获得的核苷酸序列,且与(7)或(8)所示的核苷酸序列功能相同或相似的核苷酸序列;和/或(9) a nucleotide sequence obtained by replacing, deleting or adding one or more nucleotide sequences to the nucleotide sequence shown in (7) or (8), and a nucleotide sequence having the same or similar function as the nucleotide sequence shown in (7) or (8); and/or
上述BACE1识别多肽具有:The above-mentioned BACE1 recognition polypeptide has:
(10)、如SEQ ID NO:10、如SEQ ID NO:11和/或如SEQ ID NO:12所示的氨基酸序列;或(10), the amino acid sequence shown in SEQ ID NO: 10, SEQ ID NO: 11 and/or SEQ ID NO: 12; or
(11)、如(10)所示的氨基酸序列经取代、缺失或添加一个或多个氨基获得的氨基酸序列,且与(10)所示的氨基酸序列功能相同或相似的氨基酸序列;或(11) an amino acid sequence obtained by replacing, deleting or adding one or more amino groups of the amino acid sequence shown in (10), and having the same or similar function as the amino acid sequence shown in (10); or
(12)、与(10)或(11)所示的氨基酸序列至少有80%同一性的氨基酸序列;(12) an amino acid sequence that is at least 80% identical to the amino acid sequence of (10) or (11);
编码所述BACE1识别多肽的核酸具有:The nucleic acid encoding the BACE1 recognition polypeptide has:
(13)、如SEQ ID NO:16、SEQ ID NO:17或SEQ ID NO:18所示的核苷酸序列;或(13), the nucleotide sequence shown in SEQ ID NO: 16, SEQ ID NO: 17 or SEQ ID NO: 18; or
(14)、与(13)所示的核苷酸序列编码相同蛋白质,但因遗传密码的简并性而与(13)所示的核苷酸序列不同的核苷酸序列;或(14) a nucleotide sequence that encodes the same protein as the nucleotide sequence shown in (13) but is different from the nucleotide sequence shown in (13) due to the degeneracy of the genetic code; or
(15)、与(13)或(14)所示的核苷酸序列经取代、缺失或添加一个或多个核苷酸序列获得的核苷酸序列,且与(13)或(14)所示的核苷酸序列功能相同或相似的核苷酸序列。(15) A nucleotide sequence obtained by replacing, deleting or adding one or more nucleotide sequences to the nucleotide sequence shown in (13) or (14), and a nucleotide sequence having the same or similar function as the nucleotide sequence shown in (13) or (14).
本发明还提供了引物及其组合,以上述表达载体为扩增的目的片段。The present invention also provides primers and combinations thereof, using the above expression vector as the target fragment to be amplified.
在本发明的一些实施方案中,上述引物具有:In some embodiments of the present invention, the above primers have:
(25)如SEQ ID NO:1~9任意所示的核苷酸序列;(25) a nucleotide sequence as shown in any of SEQ ID NOs: 1 to 9;
(26)与(25)所示的核苷酸序列编码相同蛋白质,但因遗传密码的简并性而与(25)所示的核苷酸序列不同的核苷酸序列;或(26) a nucleotide sequence that encodes the same protein as the nucleotide sequence shown in (25) but is different from the nucleotide sequence shown in (25) due to the degeneracy of the genetic code; or
(27)与(25)或(26)所示的核苷酸序列经取代、缺失或添加一个或多个核苷酸序列获得的核苷酸序列,且与(25)或(26)所示的核苷酸序列功能相同或相似的核苷酸序列。(27) A nucleotide sequence obtained by replacing, deleting or adding one or more nucleotide sequences to the nucleotide sequence shown in (25) or (26), and a nucleotide sequence that has the same or similar function as the nucleotide sequence shown in (25) or (26).
本发明还提供了宿主细胞,转化和/或转染上述表达载体。The present invention also provides a host cell for transforming and/or transfecting the above expression vector.
本发明还提供了蛋白探针,经上述表达载体和/或上述宿主细胞直接或间接制得。The present invention also provides a protein probe, which is directly or indirectly produced via the above expression vector and/or the above host cell.
在本发明的一些实施方案中,上述蛋白探针中使用VAMP7将探针定位至内体上,VAMP7是一种定位在内体膜上的蛋白。从cDNA文库中使用PCR技术扩增出VAMP7,将VAMP7克隆进入pcDNA3.1-mCherry-BACE1-sub中,并且放置于mCherry-BACE1-sub的前端,使其表达出VAMP7-mCherry-BACE1-sub融合蛋白。使该探针定位至内体,从而提高其对BACE1活性检测的敏感性。In some embodiments of the present invention, VAMP7 is used in the above protein probe to locate the probe on the endosome. VAMP7 is a protein located on the endosomal membrane. VAMP7 is amplified from the cDNA library using PCR technology, cloned into pcDNA3.1-mCherry-BACE1-sub, and placed at the front end of mCherry-BACE1-sub to express VAMP7-mCherry-BACE1-sub fusion protein. The probe is located in the endosome, thereby improving its sensitivity to BACE1 activity detection.
在本发明的一些实施方案中,上述蛋白探针的构建首先因VAMP7的定位序列在其N端,故将其接入探针蛋白的N端,以达到将荧光蛋白定位至内体的目的,且VAMP7在胞质侧有187个氨基酸残基,而腔内侧仅有11个氨基酸残基,可以令mCherry-BACE1-sub与大量表达在内体膜上的BACE1有更多的空间结合机会,增大酶切效率。In some embodiments of the present invention, the above-mentioned protein probe is constructed by first connecting the localization sequence of VAMP7 to the N-terminus of the probe protein to achieve the purpose of localizing the fluorescent protein to the endosome, and VAMP7 has 187 amino acid residues on the cytoplasmic side and only 11 amino acid residues on the lumenal side, which can allow mCherry-BACE1-sub to have more spatial binding opportunities with BACE1 expressed in large quantities on the endosomal membrane, thereby increasing the efficiency of enzyme cleavage.
在本发明的一些实施方案中,上述蛋白探针通过VAMP7定位在内体上,增加与BACE1结合的可能性。EVNLDAEF是APPswe(APPswe是APP的一种致病突变型,该突变可以更容易被BACE1酶切)中一段可以被BACE1识别并酶切的多肽,当BACE1识别到EVNLDAEF时,便可以发挥酶切作用,将mCherry剪成两段蛋白,从而失去荧光。通过光学系统,比如荧光显微镜,可以检测到这种荧光的变化,从而对BACE1活性进行评估。In some embodiments of the present invention, the above-mentioned protein probe is positioned on the endosome through VAMP7, increasing the possibility of binding to BACE1. EVNLDAEF is a polypeptide in APPswe (APPswe is a pathogenic mutant of APP, which can be more easily cleaved by BACE1) that can be recognized and cleaved by BACE1. When BACE1 recognizes EVNLDAEF, it can play an enzymatic role and cut mCherry into two protein segments, thereby losing fluorescence. This change in fluorescence can be detected by an optical system, such as a fluorescence microscope, to evaluate the activity of BACE1.
在本发明的一些实施方案中,上述蛋白探针中如图3所示可以看到替换入的多肽在mCherry突出的位置,更加方便BACE1的识别酶切。In some embodiments of the present invention, as shown in FIG. 3 , the replaced polypeptide in the above protein probe is located at the position where mCherry is prominent, which makes it more convenient for BACE1 to recognize and cleave the protein probe.
在本发明的一些实施方案中,也可以将上述蛋白探针构建至病毒载体之中,构建稳定表达探针的细胞系,此细胞系可以作为筛选BACE1特异性药物的工具细胞,用来建立大规模高通量药物筛选的方案。In some embodiments of the present invention, the above protein probe can also be constructed into a viral vector to construct a cell line that stably expresses the probe. This cell line can be used as a tool cell for screening BACE1-specific drugs and for establishing a large-scale high-throughput drug screening program.
本发明还提供了检测产品,包括上述蛋白探针以及可接受的助剂。The present invention also provides a detection product, comprising the above protein probe and an acceptable auxiliary agent.
在本发明的一些实施方案中,上述检测产品不包括蛋白裂解液。In some embodiments of the present invention, the above-mentioned detection product does not include protein lysate.
本发明还提供了上述表达载体、上述宿主细胞、上述蛋白探针和/或上述检测产品在制备检测BACE1活性的试剂盒中的应用。The present invention also provides the use of the above expression vector, the above host cell, the above protein probe and/or the above detection product in preparing a kit for detecting BACE1 activity.
本发明还提供了上述表达载体、上述宿主细胞、上述蛋白探针和/或上述检测产品在制备检测和/或诊断阿尔兹海默症的试剂盒中的应用。The present invention also provides the use of the above-mentioned expression vector, the above-mentioned host cell, the above-mentioned protein probe and/or the above-mentioned detection product in the preparation of a kit for detecting and/or diagnosing Alzheimer's disease.
本发明还提供了上述表达载体、上述宿主细胞、上述蛋白探针和/或上述检测产品在筛选预防和/或治疗阿尔兹海默症的药物中的应用。The present invention also provides the use of the above expression vector, the above host cell, the above protein probe and/or the above detection product in screening drugs for preventing and/or treating Alzheimer's disease.
本发明提供了表达载体,上述表达载体包括编码如下蛋白片段的基因,上述蛋白片段包括:mCherry-N片段;mCherry-C片段;VAMP7;BACE1识别多肽。The present invention provides an expression vector, which includes genes encoding the following protein fragments, and the protein fragments include: mCherry-N fragment; mCherry-C fragment; VAMP7; and BACE1 recognition polypeptide.
本发明的有益效果包括:The beneficial effects of the present invention include:
(1)与已有的检测试剂相比,本发明中的探针不必使用蛋白裂解液,可以在活细胞中进行检测,更能真实的反应BACE1在细胞内的活性。(1) Compared with existing detection reagents, the probe of the present invention does not need to use protein lysis buffer and can be detected in living cells, which can more truly reflect the activity of BACE1 in cells.
(2)与一些化合物探针相比,本发明中的蛋白探针可以固定表达在BACE1所在的内体上,可以更加直接准确的检测BACE1活性。(2) Compared with some compound probes, the protein probe in the present invention can be fixedly expressed on the endosome where BACE1 is located, and can detect BACE1 activity more directly and accurately.
(3)化学小分子的光稳定性不佳,容易发生荧光淬灭;且由于化学小分子的pH稳定性不佳,一些小分子探针容易发生水解,从而产生非特异性信号,而本发明的蛋白探针本质上是一种蛋白,其稳定性更强,避免了非特异性信号的干扰。而mCherry的pKa<4.5,在内体的酸性环境(4.5<pH<6.5)中仍然具有稳定的荧光。(3) Small chemical molecules have poor photostability and are prone to fluorescence quenching; and due to the poor pH stability of small chemical molecules, some small molecule probes are prone to hydrolysis, thereby generating nonspecific signals. The protein probe of the present invention is essentially a protein with stronger stability, thus avoiding the interference of nonspecific signals. The pKa of mCherry is <4.5, and it still has stable fluorescence in the acidic environment of the endosome (4.5 < pH < 6.5).
(4)由于本发明的蛋白探针是细胞表达的,有利于进行一些动态的持续性的实验研究。(4) Since the protein probe of the present invention is expressed by cells, it is conducive to conducting some dynamic and continuous experimental studies.
(5)相比较于利用FRET荧光对的探针检测时需要FRET荧光显微镜而言,本发明的蛋白探针仅需mCherry的红色荧光通道,在普通荧光显微镜下即可实现检测,对检测设备要求低,操作简便直接,数据处理方便。(5) Compared with the detection of probes using FRET fluorescence pairs, which requires a FRET fluorescence microscope, the protein probe of the present invention only requires the red fluorescence channel of mCherry and can be detected under an ordinary fluorescence microscope. It has low requirements for detection equipment, is simple and direct to operate, and is convenient for data processing.
(6)本发明的蛋白探针可以用于构建稳定表达的细胞系,作为BACE1特异性药物筛选的工具细胞。(6) The protein probe of the present invention can be used to construct a stable expression cell line as a tool cell for BACE1-specific drug screening.
附图说明BRIEF DESCRIPTION OF THE DRAWINGS
为了更清楚地说明本发明实施例或现有技术中的技术方案,下面将对实施例或现有技术描述中所需要使用的附图作简单地介绍。In order to more clearly illustrate the embodiments of the present invention or the technical solutions in the prior art, the drawings required for use in the embodiments or the description of the prior art are briefly introduced below.
图1示VAMP7-mCherry-BACE1-sub蛋白探针的结构图;Figure 1 shows the structure of the VAMP7-mCherry-BACE1-sub protein probe;
图2示VAMP7-mCherry-BACE1-sub蛋白探针的原理图;FIG2 shows a schematic diagram of the VAMP7-mCherry-BACE1-sub protein probe;
图3示BACE1识别多肽EVNLDAEF替换进入mCherry的位置示意图;FIG3 is a schematic diagram showing the position of BACE1 recognition peptide EVNLDAEF replaced into mCherry;
图4示VAMP7-mCherry-BACE1-sub蛋白探针的表达质粒结构图;FIG4 shows the structure of the expression plasmid of VAMP7-mCherry-BACE1-sub protein probe;
图5示HEK293T细胞中共转探针VAMP7-mCherry-BACE1-sub和Rab5a-Q79L的共定位confocal图;FIG5 shows the co-localization confocal image of co-transfected probes VAMP7-mCherry-BACE1-sub and Rab5a-Q79L in HEK293T cells;
图6示分别在HEK293T细胞中转染探针VAMP7-mCherry-BACE1-sub-(133-141),VAMP7-mCherry-BACE1-sub-(133-140),VAMP7-mCherry-BACE1-sub-(134-140)后加入BACE1抑制剂verubecestat的confocal成像和统计图;FIG6 shows confocal imaging and statistical graphs of HEK293T cells transfected with probes VAMP7-mCherry-BACE1-sub-(133-141), VAMP7-mCherry-BACE1-sub-(133-140), and VAMP7-mCherry-BACE1-sub-(134-140) and then adding the BACE1 inhibitor verubecestat;
其中:133-141,133-140,134-140代表不同长度的BACE1识别多肽:EV NLDAEFR,EVNLDAEF,VNLDAEF;Among them: 133-141, 133-140, 134-140 represent BACE1 recognition peptides of different lengths: EV NLDAEFR, EVNLDAEF, VNLDAEF;
图7示不同代数的HEK293T细胞中表达探针的confocal成像与统计图;FIG7 shows confocal imaging and statistical graphs of probe expression in HEK293T cells of different generations;
图8示探针VAMP7-mCherry-BACE1-sub-(133-140)的稳转细胞系中加入verubecestat和过表达BACE1的激光共聚焦显微图和统计图;FIG8 shows laser confocal micrographs and statistical graphs of the stably transfected cell lines containing the probe VAMP7-mCherry-BACE1-sub-(133-140) and the addition of verubecestat and overexpression of BACE1;
图9示在HEK293T细胞中分别表达探针133-141,133-140,134-139,134-140,134-141与135-140后,加入verubecestat的激光共聚焦显微图、荧光强度图及灵敏度图。FIG. 9 shows laser confocal microscopy images, fluorescence intensity images and sensitivity images of HEK293T cells expressing probes 133-141, 133-140, 134-139, 134-140, 134-141 and 135-140, respectively, and then adding verubecestat.
具体实施方式Detailed ways
本发明公开了蛋白探针以及其在检测BACE1活性中的应用。The invention discloses a protein probe and application thereof in detecting BACE1 activity.
应该理解,表述“……中的一种或多种”单独地包括每个在所述表述后叙述的物体以及所述叙述的物体中的两者或更多者的各种不同组合,除非从上下文和用法中另有理解。与三个或更多个叙述的物体相结合的表述“和/或”应该被理解为具有相同的含义,除非从上下文另有理解。It should be understood that the expression "one or more of..." includes individually each of the objects recited after the expression and various different combinations of two or more of the recited objects, unless otherwise understood from the context and usage. The expression "and/or" in combination with three or more recited objects should be understood to have the same meaning, unless otherwise understood from the context.
术语“包括”、“具有”或“含有”,包括其语法同义语的使用,通常应该被理解为开放性和非限制性的,例如不排除其他未叙述的要素或步骤,除非另有具体陈述或从上下文另有理解。The use of the terms "comprising", "having" or "containing", including their grammatical synonyms, should generally be understood as open and non-restrictive, for example not excluding other unrecited elements or steps, unless otherwise specifically stated or otherwise understood from the context.
应该理解,只要本发明仍可操作,步骤的顺序或执行某些行动的顺序并不重要。此外,两个或更多个步骤或行动可以同时进行。It should be understood that the order of steps or the order in which certain actions are performed is not important as long as the present invention remains operable. In addition, two or more steps or actions may be performed simultaneously.
本文中的任何和所有实例或示例性语言如“例如”或“包括”的使用,仅仅打算更好地说明本发明,并且除非提出权利要求,否则不对本发明的范围构成限制。本说明书中的任何语言都不应解释为指示任何未要求保护的要素对于本发明的实践是必不可少的。The use of any and all examples or exemplary language, such as "for example" or "including", herein is intended only to better illustrate the invention and does not limit the scope of the invention unless otherwise claimed. No language in this specification should be construed as indicating that any non-claimed element is essential to the practice of the invention.
此外,用以界定本发明的数值范围与参数皆是约略的数值,此处已尽可能精确地呈现具体实施例中的相关数值。然而,任何数值本质上不可避免地含有因个别测试方法所致的标准偏差。因此,除非另有明确的说明,应当理解本公开所用的所有范围、数量、数值与百分比均经过“约”的修饰。在此处,“约”通常是指实际数值在一特定数值或范围的正负10%、5%、1%或0.5%之内。In addition, the numerical ranges and parameters used to define the present invention are approximate values, and the relevant values in the specific embodiments have been presented as accurately as possible. However, any numerical value inherently inevitably contains standard deviations due to individual test methods. Therefore, unless otherwise expressly stated, it should be understood that all ranges, quantities, values and percentages used in this disclosure are modified by "about". Here, "about" generally means that the actual value is within plus or minus 10%, 5%, 1% or 0.5% of a specific value or range.
本发明荧光蛋白探针构建、多肽识别序列优化及活性检测试验中,所用原料及试剂均可由市场购得。In the fluorescent protein probe construction, polypeptide recognition sequence optimization and activity detection test of the present invention, the raw materials and reagents used can be purchased from the market.
下面结合实施例,进一步阐述本发明:The present invention will be further described below in conjunction with embodiments:
实施例1荧光蛋白探针构建至pcDNA3.1Example 1 Construction of fluorescent protein probe into pcDNA3.1
本实施实例将荧光蛋白探针构建至pcDNA3.1中,并使构建得到的探针在HEK293T细胞中表达。In this embodiment, a fluorescent protein probe is constructed into pcDNA3.1, and the constructed probe is expressed in HEK293T cells.
如图4所示是构建得到的质粒结构图,下面对操作步骤具体说明:FIG4 is a diagram of the constructed plasmid structure, and the following is a detailed description of the operation steps:
使用PCR方法从mCherry-C1的质粒中扩增得到mCherry-N和mCherry-C,使用引物:mCherry-N and mCherry-C were amplified from the mCherry-C1 plasmid using PCR using primers:
mCherry-N-for:5’-CTTGGTACCGAGCTCGGATCCATGGTGAGCAAGGGCGAGGAGGAT-3’(BamHI)(如SEQ ID NO:1所示);mCherry-N-for: 5'-CTTGGTACCGAGCTCGGATCCATGGTGAGCAAGGGCGAGGAGGAT-3'(BamHI) (as shown in SEQ ID NO: 1);
mCherry-N-rev:5’-GGTGCCGCGCAGCTT-3’(如SEQ ID NO:2所示);mCherry-N-rev: 5'-GGTGCCGCGCAGCTT-3' (as shown in SEQ ID NO: 2);
mCherry-C-for:5’-AAGCTGCGCGGCACCGAAGTGAATCTGGATGCAGAATTCCGACAGAAGAAGACCATGGGCTGGGAG-3’(如SEQ ID NO:3所示);mCherry-C-for: 5'-AAGCTGCGCGGCACCGAAGTGAATCTGGATGCAGAATTCCGACAGAAGAAGACCATGGGCTGGGAG-3' (as shown in SEQ ID NO: 3);
mCherry-N-rev:5’-CCACACTGGACTAGTGGATCCCTACTTGTACAGCTCGTCCATGCCGCC-3’(BamHI)(如SEQ ID NO:4所示)。mCherry-N-rev: 5’-CCACACTGGACTAGTGGATCCCTACTTGTACAGCTCGTCCATGCCGCC-3’(BamHI) (as shown in SEQ ID NO: 4).
其中mCherry-C-for中包含BACE1可以识别并酶切的多肽所对应的碱基序列(5’-GAAGTGAATCTGGATGCAGAATTCCGA-3’)(如SEQ ID NO:5所示)。Among them, mCherry-C-for contains the base sequence corresponding to the polypeptide that can be recognized and cleaved by BACE1 (5'-GAAGTGAATCTGGATGCAGAATTCCGA-3') (as shown in SEQ ID NO: 5).
随后使用PCR融合蛋白程序将mCherry-N和mCherry-C融合成mCherry-BACE1-sub,使用BamHI单酶切pcDNA3.1后通过同源重组方法将mCherry-BACE1-sub克隆进pcDNA3.1,构建pcDNA3.1-mCherry-BACE1-sub。Subsequently, mCherry-N and mCherry-C were fused into mCherry-BACE1-sub using the PCR fusion protein program. After pcDNA3.1 was digested with BamHI, mCherry-BACE1-sub was cloned into pcDNA3.1 by homologous recombination to construct pcDNA3.1-mCherry-BACE1-sub.
提取HEK293T细胞中的mRNA,反转录成cDNA,建立cDNA文库。使用PCR方法从cDNA文库中扩增VAMP7,使用引物:Extract mRNA from HEK293T cells, reverse transcribe into cDNA, and establish a cDNA library. Use PCR to amplify VAMP7 from the cDNA library, using primers:
VAMP7-for:5’-TTTAAACTTAAGCTTGGTACCATGGCGATTCTTTTTGCTGTTGTT-3’(KpnI)(如SEQ ID NO:6所示);VAMP7-for: 5'-TTTAAACTTAAGCTTGGTACCATGGCGATTCTTTTTGCTGTTGTT-3'(KpnI) (as shown in SEQ ID NO:6);
VAMP7-rev:5’-CATGGATCCGAGCTCGGTACCTTTCTTCACACAGCTTGGCCATGT-3’(KpnI)(如SEQ ID NO:7所示)。VAMP7-rev:5’-CATGGATCCGAGCTCGGTACCTTTCTTCACACAGCTTGGCCATGT-3’(KpnI) (as shown in SEQ ID NO:7).
使用KpnI单酶切pcDNA3.1-mCherry-BACE1-sub后通过同源重组方法将VAMP7克隆进pcDNA3.1-mCherry-BACE1-sub,构建VAMP7-mCherry-BACE1-sub-133-141。133-141是指BACE1底物的九个氨基酸序列在mCherry的133a.a.-141a.a.的位置替换掉原始序列。After single digestion of pcDNA3.1-mCherry-BACE1-sub with KpnI, VAMP7 was cloned into pcDNA3.1-mCherry-BACE1-sub by homologous recombination to construct VAMP7-mCherry-BACE1-sub-133-141. 133-141 refers to the nine amino acid sequence of the BACE1 substrate replacing the original sequence at the position of 133a.a.-141a.a. of mCherry.
进一步地,可以通过点突变的方法构建VAMP7-mCherry-BACE1-sub-133-140,VAMP7-mCherry-BACE1-sub-134-140等不同BACE1底物长度的探针。Furthermore, probes with different BACE1 substrate lengths such as VAMP7-mCherry-BACE1-sub-133-140 and VAMP7-mCherry-BACE1-sub-134-140 can be constructed by point mutation.
如图5所示是将质粒VAMP7-mCherry-BACE1-sub与Rab5a-Q79L共转染入HEK293T细胞中,可以明显的看到VAMP7-mCherry-BACE1-sub蛋白可以在HEK293T细胞中表达,并且与内体有着良好的共定位,为探针的高灵敏度提供了基础。As shown in Figure 5, the plasmids VAMP7-mCherry-BACE1-sub and Rab5a-Q79L were co-transfected into HEK293T cells. It can be clearly seen that the VAMP7-mCherry-BACE1-sub protein can be expressed in HEK293T cells and has a good co-localization with the endosome, providing a basis for the high sensitivity of the probe.
实施例2 BACE1识别的多肽序列优化筛选Example 2 Optimization and screening of peptide sequences recognized by BACE1
在该探针构建的过程中,针对BACE1识别的多肽序列进行了优化筛选:During the construction of the probe, the peptide sequence recognized by BACE1 was optimized and screened:
对最初的133-141:EVNLDAEFR进行缩短,构建了133-140:EVNLDAEF,134-139:VNLDAE,134-140:VNLDAEF,134-141:VNLDAEFR,135-140:NLDAEF。随后对共6种探针进行荧光强度和灵敏度检测:The original 133-141:EVNLDAEFR was shortened to construct 133-140:EVNLDAEF, 134-139:VNLDAE, 134-140:VNLDAEF, 134-141:VNLDAEFR, 135-140:NLDAEF. Then the fluorescence intensity and sensitivity of the six probes were tested:
结果如图9和表1所示,图9中左图为荧光强度的共聚焦图像,图9右上图为六种探针的基础荧光强度,图9右下图为六种探针的灵敏度。综合来看,133-140和134-140灵敏度有所提升,荧光强度也有提升,故而筛选出三种多肽序列。The results are shown in Figure 9 and Table 1. The left figure in Figure 9 is a confocal image of fluorescence intensity, the upper right figure in Figure 9 is the basic fluorescence intensity of the six probes, and the lower right figure in Figure 9 is the sensitivity of the six probes. Overall, the sensitivity of 133-140 and 134-140 has improved, and the fluorescence intensity has also improved, so three peptide sequences were screened.
表1Table 1
发现以下三种133-141:EVNLDAEFR,133-140:EVNLDAEF,134-140:VNLDAEF不同长度的多肽序列均可用于作为BACE1酶切的底物参与探针构建。It was found that the following three polypeptide sequences of different lengths, 133-141:EVNLDAEFR, 133-140:EVNLDAEF, and 134-140:VNLDAEF, can all be used as substrates for BACE1 cleavage and participate in probe construction.
如图6和表2所示,使用10μM的BACE1抑制剂verubecestat对VAMP7-mCherry-BACE1-sub-(133-141),VAMP7-mCherry-BACE1-sub-(133-140)和VAMP7-mCherry-BACE1-sub-(134-140)三种探针进行了检测,图6右侧分别统计了每个内体的平均荧光强度,每个细胞中内体的平均荧光强度,每个内体的总荧光强度以及每个细胞内所有内体的总荧光强度,当加入BACE1抑制剂verubecestat时,BACE1活性减弱,探针无法被切开,因此荧光强度增强。As shown in Figure 6 and Table 2, 10 μM of the BACE1 inhibitor verubecestat was used to detect the three probes VAMP7-mCherry-BACE1-sub-(133-141), VAMP7-mCherry-BACE1-sub-(133-140) and VAMP7-mCherry-BACE1-sub-(134-140). The right side of Figure 6 shows the average fluorescence intensity of each endosome, the average fluorescence intensity of the endosome in each cell, the total fluorescence intensity of each endosome and the total fluorescence intensity of all endosomes in each cell. When the BACE1 inhibitor verubecestat was added, the BACE1 activity was weakened and the probe could not be cleaved, so the fluorescence intensity was enhanced.
这证明以VAMP7-mCherry-BACE1-sub为基础构建的三种探针在检测BACE1活性方面具有实用性,并且由于序列不同,可能有助于筛选不同结合位点的BACE1药物。This demonstrates that the three probes constructed based on VAMP7-mCherry-BACE1-sub are practical in detecting BACE1 activity and may be helpful in screening BACE1 drugs with different binding sites due to their different sequences.
表2Table 2
使用ImageJ对激光共聚焦显微镜结果进行荧光强度分析,分别记录内体(图片中的点)的平均荧光强度和总荧光强度,以及每个细胞中内体的平均荧光强度和总荧光强度。数值报告为平均值(mean)+均值标准误差(SEM)。统计学显著性用学生t检验进行计算,p<0.05被认为具有统计学意义,以*按以下形式表示:*p<0.05,**p<0.01,***p<0.001。图中标尺为10μm。ImageJ was used to analyze the fluorescence intensity of the laser confocal microscopy results, and the average fluorescence intensity and total fluorescence intensity of the endosomes (dots in the picture) and the average fluorescence intensity and total fluorescence intensity of the endosomes in each cell were recorded. The values are reported as mean + standard error of the mean (SEM). Statistical significance was calculated using the Student's t-test, and p<0.05 was considered statistically significant, indicated by * in the following form: *p<0.05, **p<0.01, ***p<0.001. The scale bar in the figure is 10μm.
实施例3研究细胞衰老中BACE1活性的变换Example 3 Study on the changes of BACE1 activity during cell senescence
阿尔兹海默病(AD)是一种神经退行性疾病,AD的发生发展与年龄的增长密切相关。而BACE1与Aβ的积累有着直接的关系,并且在AD的发生发展中发挥着重要的作用。本实例的目的是应用本发明的探针研究细胞衰老中BACE1活性的变换。Alzheimer's disease (AD) is a neurodegenerative disease, and the development of AD is closely related to aging. BACE1 is directly related to the accumulation of Aβ and plays an important role in the development of AD. The purpose of this example is to use the probe of the present invention to study the changes in BACE1 activity during cell aging.
基于此目的,分别在19代和69代的HEK293T细胞中转染入mCherry-BACE1-sub,培养后进行confocal成像。结果如图7和表3所示,随着HEK293T代数的增加,探针荧光强度减弱,BACE1活性不断增强。因此,我们可以合理推测:BACE1活性增强,导致在脑组织中产生更多的Aβ积累,导致正常神经元的死亡,进而引发AD症状。这与前人在小鼠和人类脑组织中得到的结果是一致的,进一步证明了该探针的实用性。For this purpose, mCherry-BACE1-sub was transfected into HEK293T cells at the 19th and 69th generations, and confocal imaging was performed after culture. The results are shown in Figure 7 and Table 3. As the number of HEK293T generations increases, the fluorescence intensity of the probe decreases, and the activity of BACE1 continues to increase. Therefore, we can reasonably speculate that the enhanced activity of BACE1 leads to more Aβ accumulation in brain tissue, leading to the death of normal neurons, and then inducing AD symptoms. This is consistent with the results obtained by previous researchers in mouse and human brain tissues, further proving the practicality of the probe.
表3table 3
使用ImageJ对激光共聚焦显微镜结果进行荧光强度分析,统计每个细胞的平均荧光强度。数值报告为平均值(mean)+均值标准误差(SEM)。统计学显著性用学生t检验进行计算,p<0.05被认为具有统计学意义,以*按以下形式表示:*p<0.05,**p<0.01,***p<0.001。图中标尺为10μm。ImageJ was used to analyze the fluorescence intensity of the laser confocal microscopy results, and the average fluorescence intensity of each cell was calculated. The values were reported as mean + standard error of the mean (SEM). Statistical significance was calculated using the Student's t-test, and p<0.05 was considered statistically significant, indicated by * in the following form: *p<0.05, **p<0.01, ***p<0.001. The scale bar in the figure is 10 μm.
实施例4Example 4
将VAMP7-mCherry-BACE1-sub-(133-140)的基因序列通过同源重组的方式克隆进入pSin-EF2-EGFP-Pur慢病毒载体中,所用引物:The gene sequence of VAMP7-mCherry-BACE1-sub-(133-140) was cloned into the pSin-EF2-EGFP-Pur lentiviral vector by homologous recombination. The primers used were:
VAMP7-mCherry-BACE1-sub-133-140-Sin-for:5’-TTCTTCCATTTCAGGTGTCGTGAGGAATTCATGGCGATTCTTTTT-3’(EcoRI)(如SEQ ID NO:8所示)VAMP7-mCherry-BACE1-sub-133-140-Sin-for: 5'-TTCTTCCATTTCAGGTGTCGTGAGGAATTCATGGCGATTCTTTTT-3'(EcoRI) (as shown in SEQ ID NO: 8)
VAMP7-mCherry-BACE1-sub-133-140-Sin-rev:5’-GAATTGGCCGCCCTAGATGCATGCGGATCCCTACTTGTACAGCTC-3’(BamHI)(如SEQ ID NO:9所示),得到慢病毒骨架质粒。VAMP7-mCherry-BACE1-sub-133-140-Sin-rev: 5’-GAATTGGCCGCCCTAGATGCATGCGGATCCCTACTTGTACAGCTC-3’ (BamHI) (as shown in SEQ ID NO: 9), and obtained the lentiviral backbone plasmid.
随后将质粒pSin-EF2-VAMP7-mCherry-BACE1-sub-pur与包装质粒PAX2、PMD2.G按照2:2:1的质量比使用LentiFit转染入HEK293T细胞中以生产慢病毒。使用慢病毒对HEK293T细胞进行感染,并使用puromycin进行筛选,得到稳定表达VAMP7-mCherry-BACE1-sub-133-140探针的细胞系。Subsequently, the plasmid pSin-EF2-VAMP7-mCherry-BACE1-sub-pur and the packaging plasmids PAX2 and PMD2.G were transfected into HEK293T cells using LentiFit at a mass ratio of 2:2:1 to produce lentivirus. HEK293T cells were infected with lentivirus and screened with puromycin to obtain a cell line that stably expressed the VAMP7-mCherry-BACE1-sub-133-140 probe.
在该细胞系中加入verubecestat,另一方面使用瞬时转染的方法使该细胞系过表达BACE1,24h后进行激光共聚焦显微成像,并使用imageJ对荧光强度进行计算,结果见表4和图8。与图6相似,加入verubecestat后将导致该探针的荧光强度增加;而过表达BACE1之后,该细胞系中BACE1活性得到增强,使得探针被进一步酶切,导致荧光强度减弱。总之,图8中通过抑制和增强BACE1活性这两种方式验证了该细胞系对BACE1活性的灵敏性和实用性,为后续BACE1药物的筛选以及BACE1与AD进一步的相互关系的研究提供一个良好的工具。Verubecestat was added to the cell line, and on the other hand, the cell line was overexpressed with BACE1 by transient transfection. Laser confocal microscopy was performed 24 hours later, and the fluorescence intensity was calculated using imageJ. The results are shown in Table 4 and Figure 8. Similar to Figure 6, the addition of verubecestat will increase the fluorescence intensity of the probe; and after overexpressing BACE1, the BACE1 activity in the cell line is enhanced, causing the probe to be further cleaved, resulting in a decrease in fluorescence intensity. In short, Figure 8 verifies the sensitivity and practicality of the cell line to BACE1 activity by inhibiting and enhancing BACE1 activity, providing a good tool for subsequent screening of BACE1 drugs and further research on the relationship between BACE1 and AD.
表4Table 4
使用ImageJ对激光共聚焦显微镜结果进行荧光强度分析,统计内体(图中的点)的总荧光强度。数值报告为平均值(mean)+均值标准误差(SEM)。统计学显著性用学生t检验进行计算,p<0.05被认为具有统计学意义,以*按以下形式表示:*p<0.05,**p<0.01,***p<0.001。图中标尺为10μm。ImageJ was used to analyze the fluorescence intensity of the laser confocal microscopy results, and the total fluorescence intensity of the endosomes (dots in the figure) was counted. Values are reported as mean + standard error of the mean (SEM). Statistical significance was calculated using the Student's t-test, and p<0.05 was considered statistically significant, indicated by * in the following form: *p<0.05, **p<0.01, ***p<0.001. The scale bar in the figure is 10 μm.
以上所述仅是本发明的优选实施方式,应当指出,对于本技术领域的普通技术人员来说,在不脱离本发明原理的前提下,还可以做出若干改进和润饰,这些改进和润饰也应视为本发明的保护范围。The above is only a preferred embodiment of the present invention. It should be pointed out that for ordinary technicians in this technical field, several improvements and modifications can be made without departing from the principle of the present invention. These improvements and modifications should also be regarded as the scope of protection of the present invention.
序列表Sequence Listing
<110> 中国科学技术大学<110> University of Science and Technology of China
<120> 蛋白探针以及其在检测BACE1活性中的应用<120> Protein probe and its application in detecting BACE1 activity
<130> MP21037680<130> MP21037680
<160> 18<160> 18
<170> SIPOSequenceListing 1.0<170> SIPOSequenceListing 1.0
<210> 1<210> 1
<211> 45<211> 45
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 1<400> 1
cttggtaccg agctcggatc catggtgagc aagggcgagg aggat 45cttggtaccg agctcggatc catggtgagc aagggcgagg aggat 45
<210> 2<210> 2
<211> 15<211> 15
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 2<400> 2
ggtgccgcgc agctt 15ggtgccgcgc agctt 15
<210> 3<210> 3
<211> 66<211> 66
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 3<400> 3
aagctgcgcg gcaccgaagt gaatctggat gcagaattcc gacagaagaa gaccatgggc 60aagctgcgcg gcaccgaagt gaatctggat gcagaattcc gacagaagaa gaccatgggc 60
tgggag 66tgggag 66
<210> 4<210> 4
<211> 48<211> 48
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 4<400> 4
ccacactgga ctagtggatc cctacttgta cagctcgtcc atgccgcc 48ccacactgga ctagtggatc cctacttgta cagctcgtcc atgccgcc 48
<210> 5<210> 5
<211> 27<211> 27
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 5<400> 5
gaagtgaatc tggatgcaga attccga 27gaagtgaatc tggatgcaga attccga 27
<210> 6<210> 6
<211> 45<211> 45
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 6<400> 6
tttaaactta agcttggtac catggcgatt ctttttgctg ttgtt 45tttaaactta agcttggtac catggcgatt ctttttgctg ttgtt 45
<210> 7<210> 7
<211> 45<211> 45
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 7<400> 7
catggatccg agctcggtac ctttcttcac acagcttggc catgt 45catggatccg agctcggtac ctttcttcac acagcttggc catgt 45
<210> 8<210> 8
<211> 45<211> 45
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 8<400> 8
ttcttccatt tcaggtgtcg tgaggaattc atggcgattc ttttt 45ttcttccatt tcaggtgtcg tgaggaattc atggcgattc ttttt 45
<210> 9<210> 9
<211> 45<211> 45
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 9<400> 9
gaattggccg ccctagatgc atgcggatcc ctacttgtac agctc 45gaattggccg ccctagatgc atgcggatcc ctacttgtac agctc 45
<210> 10<210> 10
<211> 9<211> 9
<212> PRT<212> PRT
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 10<400> 10
Glu Val Asn Leu Asp Ala Glu Phe ArgGlu Val Asn Leu Asp Ala Glu Phe Arg
1 51 5
<210> 11<210> 11
<211> 8<211> 8
<212> PRT<212> PRT
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 11<400> 11
Glu Val Asn Leu Asp Ala Glu PheGlu Val Asn Leu Asp Ala Glu Phe
1 51 5
<210> 12<210> 12
<211> 7<211> 7
<212> PRT<212> PRT
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 12<400> 12
Val Asn Leu Asp Ala Glu PheVal Asn Leu Asp Ala Glu Phe
1 51 5
<210> 13<210> 13
<211> 396<211> 396
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 13<400> 13
atggtgagca agggcgagga ggataacatg gccatcatca aggagttcat gcgcttcaag 60atggtgagca agggcgagga ggataacatg gccatcatca aggagttcat gcgcttcaag 60
gtgcacatgg agggctccgt gaacggccac gagttcgaga tcgagggcga gggcgagggc 120gtgcacatgg agggctccgt gaacggccac gagttcgaga tcgagggcga gggcgagggc 120
cgcccctacg agggcaccca gaccgccaag ctgaaggtga ccaagggtgg ccccctgccc 180cgcccctacg agggcaccca gaccgccaag ctgaaggtga ccaagggtgg ccccctgccc 180
ttcgcctggg acatcctgtc ccctcagttc atgtacggct ccaaggccta cgtgaagcac 240ttcgcctggg acatcctgtc ccctcagttc atgtacggct ccaaggccta cgtgaagcac 240
cccgccgaca tccccgacta cttgaagctg tccttccccg agggcttcaa gtgggagcgc 300cccgccgaca tccccgacta cttgaagctg tccttccccg agggcttcaa gtgggagcgc 300
gtgatgaact tcgaggacgg cggcgtggtg accgtgaccc aggactcctc cctgcaggac 360gtgatgaact tcgaggacgg cggcgtggtg accgtgaccc aggactcctc cctgcaggac 360
ggcgagttca tctacaaggt gaagctgcgc ggcacc 396ggcgagttca tctacaaggt gaagctgcgc ggcacc 396
<210> 14<210> 14
<211> 285<211> 285
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 14<400> 14
cagaagaaga ccatgggctg ggaggcctcc tccgagcgga tgtaccccga ggacggcgcc 60cagaagaaga ccatgggctg ggaggcctcc tccgagcgga tgtaccccga ggacggcgcc 60
ctgaagggcg agatcaagca gaggctgaag ctgaaggacg gcggccacta cgacgctgag 120ctgaagggcg agatcaagca gaggctgaag ctgaaggacg gcggccacta cgacgctgag 120
gtcaagacca cctacaaggc caagaagccc gtgcagctgc ccggcgccta caacgtcaac 180gtcaagacca cctacaaggc caagaagccc gtgcagctgc ccggcgccta caacgtcaac 180
atcaagttgg acatcacctc ccacaacgag gactacacca tcgtggaaca gtacgaacgc 240atcaagttgg acatcacctc ccacaacgag gactacacca tcgtggaaca gtacgaacgc 240
gccgagggcc gccactccac cggcggcatg gacgagctgt acaag 285gccgagggcc gccactccac cggcggcatg gacgagctgt acaag 285
<210> 15<210> 15
<211> 660<211> 660
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 15<400> 15
atggcgattc tttttgctgt tgttgccagg gggaccacta tccttgccaa acatgcttgg 60atggcgattc tttttgctgt tgttgccagg gggaccacta tccttgccaa acatgcttgg 60
tgtggaggaa acttcctgga ggtgacagag cagattctgg ctaagatacc ttctgaaaat 120tgtggaggaa acttcctgga ggtgacagag cagattctgg ctaagatacc ttctgaaaat 120
aacaaactaa cgtactcaca tggcaattat ttgtttcatt acatctgcca agacaggatt 180aacaaactaa cgtactcaca tggcaattat ttgtttcatt acatctgcca agacaggatt 180
gtatatcttt gtatcactga tgatgatttt gaacgttccc gagcctttaa ttttctgaat 240gtatatcttt gtatcactga tgatgatttt gaacgttccc gagcctttaa ttttctgaat 240
gagataaaga agaggttcca gactacttac ggttcaagag cacagacagc acttccatat 300gagataaaga agaggttcca gactacttac ggttcaagag cacagacagc acttccatat 300
gccatgaata gcgagttctc aagtgtctta gctgcacagc tgaagcatca ctctgagaat 360gccatgaata gcgagttctc aagtgtctta gctgcacagc tgaagcatca ctctgagaat 360
aagggcctag acaaagtgat ggagactcaa gcccaagtgg atgaactgaa aggaatcatg 420aagggcctag acaaagtgat ggagactcaa gcccaagtgg atgaactgaa aggaatcatg 420
gtcagaaaca tagatctggt agctcagcga ggagaaagat tggaattatt gattgacaaa 480gtcagaaaca tagatctggt agctcagcga ggagaaagat tggaattatt gattgacaaa 480
acagaaaatc ttgtggattc ttctgtcacc ttcaaaacta ccagcagaaa tcttgctcga 540acagaaaatc ttgtggattc ttctgtcacc ttcaaaacta ccagcagaaa tcttgctcga 540
gccatgtgta tgaagaacct caagctcact attatcatca tcatcgtatc aattgtgttc 600gccatgtgta tgaagaacct caagctcact attatcatca tcatcgtatc aattgtgttc 600
atctatatca ttgtttcacc tctctgtggt ggatttacat ggccaagctg tgtgaagaaa 660atctatatca ttgtttcacc tctctgtggt ggatttacat ggccaagctg tgtgaagaaa 660
<210> 16<210> 16
<211> 27<211> 27
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 16<400> 16
gaagtgaatc tggatgcaga attccga 27gaagtgaatc tggatgcaga attccga 27
<210> 17<210> 17
<211> 24<211> 24
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 17<400> 17
gaagtgaatc tggatgcaga attc 24gaagtgaatc tggatgcaga attc 24
<210> 18<210> 18
<211> 21<211> 21
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 18<400> 18
gtgaatctgg atgcagaatt c 21gtgaatctgg atgcagaatt c 21
Claims (9)
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202210124739.8A CN114480494B (en) | 2022-02-10 | 2022-02-10 | Protein probes and their use in detecting BACE1 activity |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202210124739.8A CN114480494B (en) | 2022-02-10 | 2022-02-10 | Protein probes and their use in detecting BACE1 activity |
Publications (2)
Publication Number | Publication Date |
---|---|
CN114480494A CN114480494A (en) | 2022-05-13 |
CN114480494B true CN114480494B (en) | 2024-07-05 |
Family
ID=81478850
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN202210124739.8A Active CN114480494B (en) | 2022-02-10 | 2022-02-10 | Protein probes and their use in detecting BACE1 activity |
Country Status (1)
Country | Link |
---|---|
CN (1) | CN114480494B (en) |
Families Citing this family (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN115947866B (en) * | 2022-09-28 | 2024-04-19 | 大连理工大学 | A FRET-based biological probe for detecting Paxillin protein activity in living cells and its recombinant plasmid |
Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN106811453A (en) * | 2017-01-05 | 2017-06-09 | 上海交通大学 | Afriocan agapanthus cathepsin B and its encoding gene and probe and application |
CN113929748A (en) * | 2020-07-13 | 2022-01-14 | 中国科学技术大学 | Kit for detecting BACE1 enzyme activity and its use |
Family Cites Families (9)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
KR100768381B1 (en) * | 1998-09-24 | 2007-10-18 | 파마시아 앤드 업존 캄파니 엘엘씨 | Alzheimer's Disease Secretase |
CN1252086C (en) * | 2004-05-26 | 2006-04-19 | 成都军区昆明总医院 | Polypeptide and use thereof |
CN102321600B (en) * | 2011-08-02 | 2013-04-10 | 北京理工大学 | Modified beta-secretase and application thereof |
CN102653771B (en) * | 2011-10-29 | 2014-10-29 | 上海师范大学 | Expression vector of fused protein of glutamine transporter 1 as well as construction method and application thereof |
EP2695893A1 (en) * | 2012-08-09 | 2014-02-12 | Helmholtz Zentrum München Deutsches Forschungszentrum für Gesundheit und Umwelt GmbH | Novel far red fluorescent protein |
CN106084057A (en) * | 2016-06-13 | 2016-11-09 | 东北师范大学 | The preparation of BACE1 shearing-type high-titer antibody and application |
CN111172295B (en) * | 2020-02-25 | 2022-07-05 | 西北农林科技大学 | A kind of method and special kit for detecting CNV marker of cattle VAMP7 gene |
CN113082209A (en) * | 2021-03-31 | 2021-07-09 | 中国科学技术大学 | CD4+Application of T cell-derived BACE1, EP2 and EP4 as Alzheimer disease treatment target |
CN114134129B (en) * | 2021-11-19 | 2022-11-29 | 上海生物芯片有限公司 | Mitochondrial localization polypeptide, localization system and application thereof |
-
2022
- 2022-02-10 CN CN202210124739.8A patent/CN114480494B/en active Active
Patent Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN106811453A (en) * | 2017-01-05 | 2017-06-09 | 上海交通大学 | Afriocan agapanthus cathepsin B and its encoding gene and probe and application |
CN113929748A (en) * | 2020-07-13 | 2022-01-14 | 中国科学技术大学 | Kit for detecting BACE1 enzyme activity and its use |
Also Published As
Publication number | Publication date |
---|---|
CN114480494A (en) | 2022-05-13 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
JP7671316B2 (en) | Multiple receptor-ligand interaction screening | |
CN115176155A (en) | Indicator compounds, devices including indicator compounds, and methods of making and using the same | |
CN101620233B (en) | A method for detection of protein interaction | |
CN109553687B (en) | Fluorescent probes based on G protein-coupled receptors | |
JPWO2010119721A1 (en) | Ultra-bright and stable artificial bioluminescent enzyme | |
US10982209B2 (en) | Read through of truncated proteins in premature termination codon diseases by suppressor tRNAs | |
CN104991072A (en) | Manufacturing method and application of insect in-vitro protein interaction detecting system | |
CN114480494B (en) | Protein probes and their use in detecting BACE1 activity | |
US11325952B2 (en) | Light-gated signaling modulation | |
Nakayama et al. | A nuclear targeting determinant for SATB1, a genome organizer in the T cell lineage | |
US20200400567A1 (en) | Fusion polypeptide | |
CN112813049B (en) | Fusion protein for live cell RNA marking and application | |
CN114072181A (en) | Monitoring gene therapy | |
WO2005024058A2 (en) | Compounds for the treatment of diseases involving cognitive impairment, such as alzheimer’s disease, and methods for identifying such compounds | |
CN114702570B (en) | aGPCR antagonists | |
CN113234719B (en) | Inheritable Fluorescent Probes for Detecting Mitochondrial Membrane Potential and Their Applications | |
JPWO2015025959A1 (en) | Polypeptide exhibiting fluorescence characteristics and use thereof | |
WO1999060122A1 (en) | Method for examining central nervous system diseases and method for screening remedies | |
Ho et al. | Single cell transcriptomic analysis of the adult mouse pituitary reveals a novel multi-hormone cell cluster and physiologic demand-induced lineage plasticity | |
CN101204585A (en) | A method for establishing an animal model of Parkinson's disease | |
EP3830580A1 (en) | Biosensors for detecting arrestin signaling | |
JP4570875B2 (en) | Tool for isolating viable C-KIT expressing cells | |
Gottschalk et al. | Detecting protein–protein interactions in living cells: development of a bioluminescence resonance energy transfer assay to evaluate the PSD-95/NMDA receptor interaction | |
CN114075554B (en) | NCre/CCre system, and construction method and application of Cre-GFP fusion protein | |
CN104662149B (en) | The method of preparation and reorganization human tyrosinase |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
PB01 | Publication | ||
PB01 | Publication | ||
SE01 | Entry into force of request for substantive examination | ||
SE01 | Entry into force of request for substantive examination | ||
GR01 | Patent grant | ||
GR01 | Patent grant |