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CN111592595A - Neutralizing antibody against novel coronavirus SARS-Cov-2 and application thereof - Google Patents

Neutralizing antibody against novel coronavirus SARS-Cov-2 and application thereof Download PDF

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CN111592595A
CN111592595A CN202010342471.6A CN202010342471A CN111592595A CN 111592595 A CN111592595 A CN 111592595A CN 202010342471 A CN202010342471 A CN 202010342471A CN 111592595 A CN111592595 A CN 111592595A
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高威
刘晓宇
高芳
苟黎明
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Abstract

本发明涉及抗新型冠状病毒SARS‑Cov‑2的中和性抗体及其应用。该抗体至少具有重链CDR1、重链CDR2、重链CDR3、轻链CDR1、轻链CDR2、轻链CDR3之一。该抗体可用于制备检测、预防、治疗COVID‑19的诊断试剂或诊断试剂盒、药物或药物组合物。本发明以噬菌体展示技术靶向SARS‑Cov‑2‑RBD与SARS‑Cov‑1‑RBD进行差异性抗体筛选,获得了抗新型冠状病毒SARS‑Cov‑2的中和性抗体,能够阻断SARS‑Cov‑2‑RBD与ACE2阳性细胞的结合,对SARS‑Cov‑2伪病毒具有显著的病毒中和作用,为COVID‑19的预防和治疗提供了有效的备选抗体药物。

Figure 202010342471

The present invention relates to a neutralizing antibody against novel coronavirus SARS-Cov-2 and its application. The antibody has at least one of heavy chain CDR1, heavy chain CDR2, heavy chain CDR3, light chain CDR1, light chain CDR2, and light chain CDR3. The antibody can be used to prepare diagnostic reagents or diagnostic kits, medicines or pharmaceutical compositions for detecting, preventing and treating COVID-19. The present invention uses phage display technology to target SARS-Cov-2-RBD and SARS-Cov-1-RBD for differential antibody screening, and obtains neutralizing antibodies against the new coronavirus SARS-Cov-2, which can block SARS The combination of ‑Cov‑2‑RBD and ACE2 positive cells has a significant virus neutralization effect on the SARS‑Cov‑2 pseudovirus, providing an effective alternative antibody drug for the prevention and treatment of COVID‑19.

Figure 202010342471

Description

抗新型冠状病毒SARS-Cov-2的中和性抗体及其应用Neutralizing antibody against novel coronavirus SARS-Cov-2 and its application

技术领域technical field

本发明涉及一种抗新型冠状病毒SARS-Cov-2的中和性抗体及其应用,属于生物医药技术领域。The invention relates to a neutralizing antibody against novel coronavirus SARS-Cov-2 and its application, belonging to the technical field of biomedicine.

背景技术Background technique

2019新型冠状病毒肺炎(COVID-19)由新型冠状病毒(Severe Acute RespiratorySyndrome Coronavirus 2,SARS-CoV-2)感染导致,目前全球已经有超过200万人感染,致死率超过6%(https://covid19.who.int/),是危害人类健康的重大传染性疾病。SARS-CoV-2为正链单股RNA病毒,属于β型冠状病毒[1],与SARS-Cov-1的核酸同源性为79.5%[2],其天然宿主尚不清楚。 SARS-CoV-2和SARS-Cov-1均通过结合宿主细胞膜上血管紧张素转换酶2(ACE2)感染宿主细胞[3]The 2019 novel coronavirus pneumonia (COVID-19) is caused by the infection of the new coronavirus (Severe Acute Respiratory Syndrome Coronavirus 2, SARS-CoV-2). Currently, more than 2 million people have been infected worldwide, and the fatality rate exceeds 6% ( https:// covid19.who.int/ ), is a major infectious disease that endangers human health. SARS-CoV-2 is a positive-strand single-stranded RNA virus, belonging to beta coronavirus [1] , and its nucleic acid homology with SARS-Cov-1 is 79.5% [2] , and its natural host is unknown. Both SARS-CoV-2 and SARS-Cov-1 infect host cells by binding to angiotensin-converting enzyme 2 (ACE2) on the host cell membrane [3] .

ACE2属于血管紧张素转换酶,底物为I型和II型血管紧张素。生理状态下,ACE2通过水解底物来抵抗由ACE1引起的血管收缩效应。SARS-Cov-2 通过病毒外壳上的Spike糖蛋白S1亚基的受体识别结构域(receptor binding domain,RBD)与ACE2结合,进而入侵宿主细胞[4]ACE2 is an angiotensin-converting enzyme, and its substrates are type I and type II angiotensin. Under physiological conditions, ACE2 resists the vasoconstrictive effect caused by ACE1 by hydrolyzing the substrate. SARS-Cov-2 binds to ACE2 through the receptor binding domain (RBD) of Spike glycoprotein S1 subunit on the virus coat, and then invades host cells [4] .

SARS-Cov-2-RBD与ACE2复合物的蛋白质结构目前已经解析,和 SARS-Cov-1相比,两种RBD均以相同的角度与ACE2结合,通过17个氨基酸残基与ACE2的20个氨基酸残基形成相互作用[3,5]。两种RBD与ACE2接触界面的细微差别导致了SARS-Cov-1和SARS-Cov-2与ACE2亲和力的差别,这可能会对后续研究有利。The protein structure of the complex of SARS-Cov-2-RBD and ACE2 has been analyzed. Compared with SARS-Cov-1, both RBDs bind to ACE2 at the same angle, through 17 amino acid residues and 20 of ACE2. Amino acid residues form interactions [3,5] . Subtle differences in the contact interface of the two RBDs with ACE2 lead to differences in the affinity of SARS-Cov-1 and SARS-Cov-2 for ACE2, which may be beneficial for follow-up studies.

目前,尚无SARS-CoV-2病毒特异性的疫苗和中和性抗体用于临床治疗。因此,通过筛选获得具有中和作用的人源单克隆抗体,是预防和治疗 COVID-19的迫切需要。Currently, there are no SARS-CoV-2 virus-specific vaccines and neutralizing antibodies for clinical treatment. Therefore, obtaining neutralizing human monoclonal antibodies through screening is an urgent need for the prevention and treatment of COVID-19.

发明内容SUMMARY OF THE INVENTION

本发明的主要目的是:克服现有技术存在的问题,提供一种抗新型冠状病毒SARS-Cov-2的中和性抗体,具有针对新型冠状病毒SARS-Cov-2的高效抗病毒能力。同时,还提供该抗体的应用。The main purpose of the present invention is to overcome the problems existing in the prior art, and to provide a neutralizing antibody against the novel coronavirus SARS-Cov-2, which has high-efficiency antiviral ability against the novel coronavirus SARS-Cov-2. At the same time, the application of the antibody is also provided.

本发明解决其技术问题的技术方案如下:The technical scheme that the present invention solves its technical problem is as follows:

一种抗新型冠状病毒SARS-Cov-2的中和性抗体,所述抗体包括重链和轻链,其特征是,所述抗体至少具有以下技术特征之一:A neutralizing antibody against the novel coronavirus SARS-Cov-2, the antibody comprises a heavy chain and a light chain, wherein the antibody has at least one of the following technical characteristics:

i、所述重链包括重链CDR1,其氨基酸序列为:GFTFSSYA;i, the heavy chain includes the heavy chain CDR1, and its amino acid sequence is: GFTFSSYA;

ii、所述重链包括重链CDR2,其氨基酸序列为:SIASSGYYTD;ii, the heavy chain includes the heavy chain CDR2, and its amino acid sequence is: SIASSGYYTD;

iii、所述重链包括重链CDR3,其氨基酸序列为:KDADS;iii, the heavy chain includes heavy chain CDR3, and its amino acid sequence is: KDADS;

iv、所述轻链包括轻链CDR1,其氨基酸序列为:ISSYL;iv, the light chain includes light chain CDR1, and its amino acid sequence is: ISSYL;

v、所述轻链包括轻链CDR2,其氨基酸序列为:AASYL;v, the light chain includes the light chain CDR2, and its amino acid sequence is: AASYL;

vi、所述轻链包括轻链CDR3,其氨基酸序列为:AYSAPS。vi. The light chain includes light chain CDR3, and its amino acid sequence is: AYSAPS.

优选地,所述抗体至少具有以下技术特征之一:Preferably, the antibody has at least one of the following technical characteristics:

i、所述重链包括重链CDR1,其氨基酸序列为:GFTFSSYA;所述重链包括重链CDR2,其氨基酸序列为:SIASSGYYTD;所述重链还包括重链CDR3,其氨基酸序列为:KDADS;i. The heavy chain includes heavy chain CDR1, whose amino acid sequence is: GFTFSSYA; the heavy chain includes heavy chain CDR2, whose amino acid sequence is: SIASSGYYTD; the heavy chain also includes heavy chain CDR3, whose amino acid sequence is: KDADS ;

ii、所述轻链包括轻链CDR1,其氨基酸序列为:ISSYL;所述轻链包括轻链CDR2,其氨基酸序列为:AASYL;所述轻链还包括轻链CDR3,其氨基酸序列为:AYSAPS。ii, the light chain includes light chain CDR1, and its amino acid sequence is: ISSYL; the light chain includes light chain CDR2, and its amino acid sequence is: AASYL; the light chain also includes light chain CDR3, and its amino acid sequence is: AYSAPS .

优选地,所述抗体的氨基酸序列如SEQ ID NO:2所示。Preferably, the amino acid sequence of the antibody is shown in SEQ ID NO:2.

优选地,所述抗体为VH单域结构抗体、Fab片段、Fab′片段、 F(ab)′2片段、单链可变区片段scFv、二硫化合物稳定的可变区片段dsFv、 IgG分子、或双特异性抗体。Preferably, the antibody is a VH single-domain structure antibody, Fab fragment, Fab' fragment, F(ab)' 2 fragment, single-chain variable fragment scFv, disulfide stabilized variable fragment dsFv, IgG molecule, or bispecific antibodies.

优选地,所述抗体具有标记,所述标记包括荧光标记、酶标记、以及放射性标记。Preferably, the antibody has a label including fluorescent labels, enzymatic labels, and radioactive labels.

本发明还提供:The present invention also provides:

编码前文所述抗新型冠状病毒SARS-Cov-2的中和性抗体的核酸。Nucleic acid encoding the neutralizing antibody against the novel coronavirus SARS-Cov-2 described above.

优选地,所述核酸的序列如SEQ ID NO:1所示。Preferably, the sequence of the nucleic acid is shown in SEQ ID NO:1.

本发明还提供:The present invention also provides:

前文所述抗新型冠状病毒SARS-Cov-2的中和性抗体用于制备诊断试剂或诊断试剂盒、药物或药物组合物的用途。Use of the aforementioned neutralizing antibody against novel coronavirus SARS-Cov-2 for preparing diagnostic reagents or diagnostic kits, medicines or pharmaceutical compositions.

前文所述核酸用于制备抗新型冠状病毒SARS-Cov-2的中和性抗体、药物或药物组合物的用途。Use of the aforementioned nucleic acid for preparing neutralizing antibodies, drugs or pharmaceutical compositions against novel coronavirus SARS-Cov-2.

其中,所述药物或药物组合物具有针对新型冠状病毒SARS-Cov-2的中和性抗病毒作用。Wherein, the medicine or pharmaceutical composition has a neutralizing antiviral effect against the novel coronavirus SARS-Cov-2.

本发明利用噬菌体展示技术,通过靶向SARS-Cov-2-RBD与 SARS-Cov-1-RBD进行差异性抗体筛选,获得了抗新型冠状病毒SARS-Cov-2 的中和性抗体,该抗体能够阻断SARS-Cov-2-RBD与ACE2阳性细胞的结合,对SARS-Cov-2伪病毒具有显著的病毒中和作用,为COVID-19的预防和治疗提供了有效的备选抗体药物,具有潜在的临床应用前景。The present invention utilizes phage display technology to screen differential antibodies by targeting SARS-Cov-2-RBD and SARS-Cov-1-RBD to obtain neutralizing antibodies against the new coronavirus SARS-Cov-2. It can block the combination of SARS-Cov-2-RBD and ACE2 positive cells, has a significant virus neutralization effect on SARS-Cov-2 pseudovirus, and provides an effective alternative antibody drug for the prevention and treatment of COVID-19, Has potential clinical application prospects.

附图说明Description of drawings

图1为本发明实施例1中ELISA检测富集噬菌体对抗原蛋白的结合情况图。Fig. 1 is a graph showing the binding of the enriched phage to the antigenic protein by ELISA in Example 1 of the present invention.

图2为本发明实施例2中噬菌体对SARS-Cov-2-RBD蛋白的特异性结合检测(ELISA)图。Fig. 2 is the specific binding detection (ELISA) diagram of phage to SARS-Cov-2-RBD protein in Example 2 of the present invention.

图3、图4分别为本发明实施例3的表达载体示意图。FIG. 3 and FIG. 4 are schematic diagrams of the expression vector of Example 3 of the present invention, respectively.

图5为本发明实施例3的SDS-PAGE结果图。FIG. 5 is a graph showing the results of SDS-PAGE in Example 3 of the present invention.

图6为本发明实施例4的亲和力分析结果图。FIG. 6 is a graph showing the results of affinity analysis in Example 4 of the present invention.

图7为本发明实施例5的抗体阻断效应分析图。FIG. 7 is an analysis diagram of the antibody blocking effect of Example 5 of the present invention.

图8为本发明实施例6的抗体抗伪病毒中和效应评估图。FIG. 8 is a graph showing the evaluation of the anti-pseudovirus neutralization effect of the antibody of Example 6 of the present invention.

具体实施方式Detailed ways

下面结合实施例对本发明作进一步详细描述。但是本发明不限于所给出的例子。所用方法如无特别说明均为常规方法,所用试剂和材料如无特别说明均为市售品。The present invention will be described in further detail below in conjunction with the embodiments. However, the invention is not limited to the examples given. The methods used are conventional methods unless otherwise specified, and the reagents and materials used are commercially available unless otherwise specified.

实施例1、筛选靶向SARS-Cov-2-RBD的全人源抗体Example 1. Screening of fully human antibodies targeting SARS-Cov-2-RBD

采用噬菌体展示技术,以SARS-Cov-2-RBD-his蛋白为阳性抗原,以SARS-Cov-1-RBD-hFc为阴性抗原,在Tomlinson I&J噬菌体文库(Genservice Ltd.,Cambridge,UK,文库大小为1.47x108)中进行差异筛选。Using phage display technology, the SARS-Cov-2-RBD-his protein was used as the positive antigen, and the SARS-Cov-1-RBD-hFc was used as the negative antigen. Differential screening was performed in 1.47x10 8 ).

分别使用50μg/ml SARS-Cov-2-RBD his抗原和SARS-Cov-1-RBD hFc抗原于4℃包被免疫板过夜;用含有5%脱脂奶粉,0.1%Tween-20的PBS溶液室温封闭免疫板1小时;噬菌体文库以1012pfu与10%脱脂奶粉PBS溶液1:1 混合后室温孵育2小时,加入封闭好的SARS-Cov-1-RBD hFc抗原免疫板中 (100μl/孔),室温孵育1小时,进行阴性抗原预吸附;预吸附后上清转移至加入封闭好的SARS-Cov-2-RBD his抗原免疫板中(100μl/孔),室温孵育1小时。用0.1%Tween-20的PBS溶液洗涤免疫板20次;100μl 100mM Triethylamine室温洗脱30分钟;洗脱的噬菌体感染对数生长期的TG1细胞,扩增和回收后用于下一轮淘选。淘选后ELISA分析阳性噬菌体富集情况。Immunoplates were coated with 50 μg/ml SARS-Cov-2-RBD his antigen and SARS-Cov-1-RBD hFc antigen at 4°C overnight; blocked with PBS solution containing 5% nonfat dry milk and 0.1% Tween-20 at room temperature Immune plate for 1 hour; phage library was mixed 1:1 with 10 % skimmed milk powder in PBS, incubated at room temperature for 2 hours, added to the blocked SARS-Cov-1-RBD hFc antigen immune plate (100 μl/well), Incubate at room temperature for 1 hour to perform pre-adsorption of negative antigens; after pre-adsorption, the supernatant is transferred to the blocked SARS-Cov-2-RBD his antigen immune plate (100 μl/well), and incubated at room temperature for 1 hour. The immune plate was washed 20 times with 0.1% Tween-20 in PBS; 100 μl of 100 mM Triethylamine was eluted at room temperature for 30 minutes; the eluted phages were infected with TG1 cells in logarithmic growth phase, amplified and recovered for the next round of panning. The enrichment of positive phages was analyzed by ELISA after panning.

ELISA检测的具体过程为:以5μg/ml的SARS-Cov-2-RBD his抗原和阴性对照蛋白GPC5 his分别于4℃包被免疫板过夜;用含有3%脱脂奶粉,0.1% Tween-20的PBS溶液室温封闭免疫板1小时;将每一轮富集的噬菌体扩增并回收,以1:1比例与6%脱脂奶粉PBS室温孵育2小时,加入封闭好的免疫板中(100μl/孔),室温孵育1小时;用0.1%Tween-20的PBS溶液洗涤免疫板5次;将HRP/Anti-M13 Monoclonal conjugate以1:4000比例与含5%脱脂奶粉,0.05%Tween-20的PBS溶液混合,加入洗涤好的免疫板中(50μl/孔),室温孵育1小时;用0.05%Tween-20的PBS溶液洗涤免疫板5次;将TMB 显色液加入免疫板中(100μl/孔),室温显色3分钟后,加入0.5M硫酸终止显色(100μl/孔);用酶联免疫检测仪在450nm波长下检测吸光值,并分析每轮扩增后噬菌体的亲和力。The specific process of ELISA detection is as follows: with 5 μg/ml of SARS-Cov-2-RBD his antigen and negative control protein GPC5 his respectively at 4 ° C to coat the immune plate overnight; with 3% skimmed milk powder, 0.1% Tween-20 The immune plate was blocked with PBS solution for 1 hour at room temperature; the enriched phages in each round were amplified and recovered, incubated at room temperature with 6% nonfat dry milk PBS at a ratio of 1:1 for 2 hours, and added to the blocked immune plate (100 μl/well) , incubate for 1 hour at room temperature; wash the immunoplate 5 times with 0.1% Tween-20 in PBS; mix HRP/Anti-M13 Monoclonal conjugate with 5% nonfat dry milk, 0.05% Tween-20 in PBS at a ratio of 1:4000 , add it to the washed immune plate (50 μl/well), incubate at room temperature for 1 hour; wash the immune plate 5 times with 0.05% Tween-20 in PBS; add TMB chromogenic solution to the immune plate (100 μl/well) at room temperature After 3 minutes of color development, 0.5M sulfuric acid was added to stop the color development (100 μl/well); the absorbance was detected with an enzyme-linked immunosorbent assay at a wavelength of 450 nm, and the affinity of the phage after each round of amplification was analyzed.

结果如图1所示,在四轮富集后,富集的噬菌体群对SARS-Cov-2-RBD-his 抗原的亲和力显著升高。The results are shown in Figure 1. After four rounds of enrichment, the affinity of the enriched phage population for the SARS-Cov-2-RBD-his antigen was significantly increased.

在第四轮富集的噬菌体群中随机挑取单克隆,检测它们对 SARS-Cov-2-RBD-his的结合特性。结果发现有1条抗体序列(4A3)发生了显著富集。Single clones were randomly picked from the fourth round of enriched phage population and tested for their binding properties to SARS-Cov-2-RBD-his. It was found that one antibody sequence (4A3) was significantly enriched.

经测序鉴定,该抗体的DNA序列如SEQ ID NO:1所示,氨基酸序列如 SEQ ID NO:2所示。After sequencing, the DNA sequence of the antibody is shown in SEQ ID NO: 1, and the amino acid sequence is shown in SEQ ID NO: 2.

SEQ ID NO:1:SEQ ID NO: 1:

gaggtgcagctgttggagtctgggggaggcttggtacagcctggggggtccctgagactctcctgt gcagcctctggattcacctttagcagctatgccatgagctgggtccgccaggctccagggaagggg ctggagtgggtctcatctattgcttcttctggttattatacagattacgcagactccgtgaagggc cggttcaccatctccagagacaattccaagaacacgctgtatctgcaaatgaacagcctgagagcc gaggacacggccgtatattactgtgcgaaagatgctgattcttttgactactggggccagggaacc ctggtcaccgtctcgagcggtggaggcggttcaggcggaggtggcagcggcggtggcgggtcggac atccagatgacccagtctccatcctccctgtctgcatctgtaggagacagagtcaccatcacttgc cgggcaagtcagagcattagcagctatttaaattggtatcagcagaaaccagggaaagcccctaag ctcctgatctatgctgcatcctatttgcaaagtggggtcccatcaaggttcagtggcagtggatct gggacagatttcactctcaccatcagcagtctgcaacctgaagattttgcaacttactactgtcaa caggcttattctgctccttctacgttcggccaagggaccaaggtggaaatcaaa。gaggtgcagctgttggagtctgggggaggcttggtacagcctggggggtccctgagactctcctgt gcagcctctggattcacctttagcagctatgccatgagctgggtccgccaggctccagggaagggg ctggagtgggtctcatctattgcttcttctggttattatacagattacgcagactccgtgaagggc cggttcaccatctccagagacaattccaagaacacgctgtatctgcaaatgaacagcctgagagcc gaggacacggccgtatattactgtgcgaaagatgctgattcttttgactactggggccagggaacc ctggtcaccgtctcgagcggtggaggcggttcaggcggaggtggcagcggcggtggcgggtcggac atccagatgacccagtctccatcctccctgtctgcatctgtaggagacagagtcaccatcacttgc cgggcaagtcagagcattagcagctatttaaattggtatcagcagaaaccagggaaagcccctaag ctcctgatctatgctgcatcctatttgcaaagtggggtcccatcaaggttcagtggcagtggatct gggacagatttcactctcaccatcagcagtctgcaacctgaagattttgcaacttactactgtcaa caggcttattctgctccttctacgttcggccaagggaccaaggtggaaatcaaa。

SEQ ID NO:2:SEQ ID NO: 2:

EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSSIASSGYYTDYADSVKG RFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDADSFDYWGQGTLVTVSSGGGGSGGGGSGGGGSD IQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASYLQSGVPSRFSGSGS GTDFTLTISSLQPEDFATYYCQQAYSAPSTFGQGTKVEIK。EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSSIASSGYYTDYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDADSFDYWGQGTLVTVSSGGGGSGGGGSGGGGSDIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASYLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQAYSAPSTFGQGTK.

该氨基酸序列中,包含的CDR区域如下:氨基酸残基26-33(即GFTFSSYA) 为重链CDR1,氨基酸残基50-59(即SIASSGYYTD)为重链CDR2,氨基酸残基98-102(即KDADS)为重链CDR3;氨基酸残基160-164(即ISSYL) 为轻链CDR1,氨基酸残基181-185(即AASYL)为轻链CDR2,氨基酸残基 222-227(即AYSAPS)为轻链CDR3。In this amino acid sequence, the included CDR regions are as follows: amino acid residues 26-33 (ie GFTFSSYA) are heavy chain CDR1, amino acid residues 50-59 (ie SIASSGYYTD) are heavy chain CDR2, amino acid residues 98-102 (ie KDADS) ) is heavy chain CDR3; amino acid residues 160-164 (ie ISSYL) are light chain CDR1, amino acid residues 181-185 (ie AASYL) are light chain CDR2, amino acid residues 222-227 (ie AYSAPS) are light chain CDR3 .

此外,该抗体形式可选自VH单域结构抗体、Fab片段、Fab′片段、 F(ab)′2片段、单链可变区片段(scFv)、二硫化合物稳定的可变区片段(dsFv)、 IgG分子、或双特异性抗体。该抗体可选择具有标记,标记包括荧光标记、酶标记、以及放射性标记。In addition, the antibody format can be selected from VH single domain structure antibodies, Fab fragments, Fab' fragments, F(ab)' 2 fragments, single chain variable region fragments (scFv), disulfide stabilized variable region fragments (dsFv) ), IgG molecules, or bispecific antibodies. The antibody can optionally be labeled, including fluorescent labels, enzymatic labels, and radioactive labels.

实施例2、抗体的抗原特异性分析Example 2. Antigen specificity analysis of antibodies

本实施例采用ELISA检测实施例1的4A3噬菌体与SARS-Cov-2-RBD蛋白的结合情况。In this example, ELISA was used to detect the binding of the 4A3 phage of Example 1 to the SARS-Cov-2-RBD protein.

具体过程为:分别使用5μg/ml的SARS-Cov-1-RBD-hFc和 SARS-Cov-2-RBD-hFc于4℃包被免疫板过夜;用含有3%脱脂奶粉,0.05% Tween-20的PBS溶液室温封闭免疫板1小时;将4A3的噬菌体加入封闭好的免疫板中(50μl/孔),室温孵育1小时;用0.05%Tween-20的PBS溶液洗涤免疫板3次(340ul/孔);将HRP/Anti-M13 Monoclonal conjugate以1:4000比例与含5%脱脂奶粉,0.05%Tween-20的PBS溶液混合,加入洗涤好的免疫板中(50μl/孔),室温孵育1小时;用0.05%Tween-20的PBS溶液洗涤免疫板5次;将TMB显色液加入免疫板中(100μl/孔),室温显色3分钟后,加入0.5M硫酸终止显色(100μl/孔);用酶联免疫检测仪在450nm波长下检测吸光值。The specific process is as follows: use 5 μg/ml SARS-Cov-1-RBD-hFc and SARS-Cov-2-RBD-hFc to coat the immune plate overnight at 4°C; The PBS solution of 0.05% Tween-20 was used to block the immune plate for 1 hour at room temperature; the phage of 4A3 was added to the blocked immune plate (50 μl/well), and incubated at room temperature for 1 hour; the immune plate was washed 3 times with 0.05% Tween-20 in PBS (340 μl/well). ); Mix HRP/Anti-M13 Monoclonal conjugate with PBS solution containing 5% nonfat milk powder and 0.05% Tween-20 at a ratio of 1:4000, add it to the washed immune plate (50μl/well), and incubate at room temperature for 1 hour; Wash the immune plate 5 times with 0.05% Tween-20 in PBS; add TMB color development solution to the immune plate (100 μl/well), and after 3 minutes of color development at room temperature, add 0.5M sulfuric acid to stop the color development (100 μl/well); Absorbance values were detected at 450 nm wavelength with an enzyme-linked immunosorbent assay.

如图2所示,结果显示4A3抗体特异性识别SARS-Cov-2-RBD-hFc蛋白,但不识别SARS-Cov-1-RBD-hFc蛋白。As shown in Figure 2, the results showed that the 4A3 antibody specifically recognized the SARS-Cov-2-RBD-hFc protein, but not the SARS-Cov-1-RBD-hFc protein.

实施例3、抗体的表达与纯化Example 3. Expression and purification of antibodies

分别将4A3 scFv序列的重链可变区序列和轻链可变区序列插入 pFUSE-CHIg-HG1和pFUSE2-CLIg-hk载体(Invivogen,San Diego,CA),构建成人IgG1表达质粒,如图3、图4所示。上述质粒在293T细胞中共转染后收集上清,并用protein A-Agarose分离柱进行纯化,SDS-PAGE检测抗体的纯度,如图5所示。The heavy chain variable region sequence and light chain variable region sequence of the 4A3 scFv sequence were inserted into the pFUSE-CHIg-HG1 and pFUSE2-CLIg-hk vectors (Invivogen, San Diego, CA), respectively, to construct an adult IgG1 expression plasmid, as shown in Figure 3 , as shown in Figure 4. The above plasmids were co-transfected in 293T cells, and the supernatant was collected and purified by protein A-Agarose separation column. The purity of the antibody was detected by SDS-PAGE, as shown in Figure 5.

具体过程为:分别将4A3 scFv序列的重链可变区序列和轻链可变区序列插入pFUSE-CHIg-HG1和pFUSE2-CLIg-hk(Invivogen,San Diego,CA),构建成人IgG表达质粒。用添加10%胎牛血清、100U/ml青霉素、0.1mg/ml链霉素的DMEM培养基在细胞培养皿中种5百万个HEK293T细胞,置于5%CO2,37℃培养箱中培养。当细胞密度到达60-80%时,利用PEI将5μg pFUSE-4A3 VH和5μg pFUSE-4A3 VL质粒共转染入HEK293T细胞;收集上清。The specific process is as follows: insert the heavy chain variable region sequence and light chain variable region sequence of the 4A3 scFv sequence into pFUSE-CHIg-HG1 and pFUSE2-CLIg-hk (Invivogen, San Diego, CA), respectively, to construct an adult IgG expression plasmid. 5 million HEK293T cells were seeded in a cell culture dish with DMEM medium supplemented with 10% fetal bovine serum, 100 U/ml penicillin, and 0.1 mg/ml streptomycin, and cultured in a 5% CO2, 37°C incubator. When the cell density reached 60-80%, 5 μg pFUSE-4A3 VH and 5 μg pFUSE-4A3 VL plasmids were co-transfected into HEK293T cells using PEI; the supernatant was collected.

将收集的上清液在3500rpm、4℃条件下离心20分钟,并用0.45μm的微孔滤膜抽滤,进一步去除碎片;将上清液通过Protein A-Agarose(GE Healthcare, Piscataway,NJ)亲和柱分离纯化4A3 IgG重组蛋白。通过BCA法测定蛋白浓度,并将3μg 4A3 IgG重组蛋白进行聚丙烯酰胺凝胶电泳,得到4A3 IgG重组蛋白的条带。The collected supernatant was centrifuged at 3500 rpm and 4 °C for 20 minutes, and filtered with a 0.45 μm microporous filter to further remove debris; and column separation and purification of 4A3 IgG recombinant protein. The protein concentration was determined by BCA method, and 3 μg of 4A3 IgG recombinant protein was subjected to polyacrylamide gel electrophoresis to obtain a band of 4A3 IgG recombinant protein.

实施例4、抗体亲和力分析Example 4. Antibody affinity analysis

利用SPR实验,测定4A3与SARS-Cov-2-RBD his蛋白的亲和力。Using SPR experiment, the affinity of 4A3 and SARS-Cov-2-RBD his protein was determined.

4A3抗体亲和力分析由南京金斯瑞公司完成,表面等离子共振分析(SPR) 是用Biacore T200,GR18010468(GE Healthcare)进行的。具体步骤如下:4A3 antibody affinity analysis was performed by Nanjing GenScript, and surface plasmon resonance analysis (SPR) was performed with Biacore T200, GR18010468 (GE Healthcare). Specific steps are as follows:

首先,将抗体4A3固定在Series S Sensor Chip Protein A芯片(GE Healthcare)上,然后将浓度梯度为1.25nM-40nM的SARS-Cov-2-RBD蛋白分别注入芯片,分析在恒温25℃进行,使用的缓冲液是HBS-EP+:10mM HEPES,150mM NaCl,3mM EDTA,0.05%P20,pH 7.4(Lot.No.30393)(GE Healthcare);流速为 10μl/min。结合曲线如图6所示。图中5条曲线的抗体浓度由上到下分别为40、 20、10、5、2.5、1.25nM,不同浓度的曲线组成图示的动力学曲线。结合动力学常数的计算是利用Biacore T200 Evaluation software version 3.1软件进行的。结果表明,4A3抗体与SARS-Cov-2-RBD his蛋白的亲和力检测结果为 ka=1.91E+06,kd=1.90E-03,KD为3.62nM。First, the antibody 4A3 was immobilized on the Series S Sensor Chip Protein A chip (GE Healthcare), and then the SARS-Cov-2-RBD protein with a concentration gradient of 1.25nM-40nM was injected into the chip, and the analysis was performed at a constant temperature of 25°C using The buffer was HBS-EP+: 10 mM HEPES, 150 mM NaCl, 3 mM EDTA, 0.05% P20, pH 7.4 (Lot. No. 30393) (GE Healthcare); flow rate was 10 μl/min. The binding curves are shown in Figure 6. The antibody concentrations of the five curves in the figure from top to bottom are 40, 20, 10, 5, 2.5, and 1.25 nM, respectively, and the curves of different concentrations constitute the kinetic curves shown in the figure. Calculation of binding kinetic constants was performed using Biacore T200 Evaluation software version 3.1 software. The results showed that the affinity test results of 4A3 antibody and SARS-Cov-2-RBD his protein were ka=1.91E+06, kd=1.90E-03, and KD was 3.62nM.

实施例5、抗体对SARS-Cov-2-RBD与ACE2-CHO细胞结合的阻断Example 5. Blockade of the binding of antibodies to SARS-Cov-2-RBD and ACE2-CHO cells

提前将4A3IgG,对照IgG,M396抗体(此为SARS-Cov-1中和性抗体) 与SARS-Cov-2-RBD-hFc蛋白室温预孵育1小时后,将106个ACE2-CHO细胞加入到混合体系中,冰上孵育1小时。PBS洗涤细胞,1:200加入Goat anti-human PE,冰上孵育1小时。PBS洗涤细胞,BD FACSCalibur上机检测 SARS-Cov-2-RBD-hFc与ACE2-CHO细胞结合情况。After pre-incubating 4A3IgG, control IgG, M396 antibody (this is SARS-Cov-1 neutralizing antibody) with SARS-Cov-2-RBD-hFc protein for 1 hour at room temperature, 10 6 ACE2-CHO cells were added to Mix the system and incubate on ice for 1 hour. Cells were washed with PBS, added with Goat anti-human PE at 1:200, and incubated on ice for 1 hour. The cells were washed with PBS, and the BD FACSCalibur was used to detect the binding of SARS-Cov-2-RBD-hFc to ACE2-CHO cells.

结果如图7所示,4A3抗体与SARS-Cov-2-RBD蛋白孵育后,能够显著抑制SARS-Cov-2-RBD与ACE2-CHO细胞的结合,而SARS-Cov-1-RBD中和性抗体M396不能阻断SARS-Cov-2-RBD与ACE2-CHO细胞的结合The results are shown in Figure 7. After incubation with SARS-Cov-2-RBD protein, 4A3 antibody can significantly inhibit the binding of SARS-Cov-2-RBD to ACE2-CHO cells, while SARS-Cov-1-RBD neutralizes the Antibody M396 cannot block the binding of SARS-Cov-2-RBD to ACE2-CHO cells

实施例6、病毒中和实验Example 6. Virus neutralization experiment

在慢病毒包装系统中将VSV-G蛋白基因置换为SARS-Cov-2 spike基因,与pLVX-EGFP-Luciferase报告基因共转染293T细胞(即以伪病毒转染),收取48小时病毒上清,1:1稀释后待用。将ACE2-CHO细胞按104/孔接种于 96孔板中培养过夜。预先将梯度稀释的抗体与病毒上清37℃共孵育1小时后,加入到ACE2-CHO细胞培养板中。48小时后,检测Luciferase活性。The VSV-G protein gene was replaced with the SARS-Cov-2 spike gene in the lentiviral packaging system, and 293T cells were co-transfected with the pLVX-EGFP-Luciferase reporter gene (ie, pseudovirus transfection), and the virus supernatant was collected for 48 hours. , 1:1 diluted for use. ACE2-CHO cells were seeded at 10 4 /well in a 96-well plate and cultured overnight. After pre-incubating the serially diluted antibody and virus supernatant at 37°C for 1 hour, it was added to the ACE2-CHO cell culture plate. After 48 hours, Luciferase activity was detected.

如图8所示,结果表明4A3抗体能够显著抑制伪病毒对ACE2-CHO细胞的感染,IC50为0.28μg/ml。As shown in Figure 8, the results showed that the 4A3 antibody could significantly inhibit the infection of ACE2-CHO cells by pseudovirus with an IC 50 of 0.28 μg/ml.

本发明的各抗体能特异性结合/识别SARS-Cov-2-RBD his抗原,对 SARS-Cov-2-RBD his蛋白有较好的亲和力,能够有效抑制SARS-Cov-2入侵细胞,具有成为COVID-19预防和治疗药物的重要应用价值。Each antibody of the present invention can specifically bind/recognize SARS-Cov-2-RBD his antigen, has good affinity for SARS-Cov-2-RBD his protein, can effectively inhibit SARS-Cov-2 invading cells, and has the ability to become Important application value of COVID-19 prevention and treatment drugs.

除上述实施例外,本发明还可以有其他实施方式。凡采用等同替换或等效变换形成的技术方案,均落在本发明要求的保护范围。In addition to the above-described embodiments, the present invention may also have other embodiments. All technical solutions formed by equivalent replacement or equivalent transformation fall within the protection scope of the present invention.

参考文献references

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序列表sequence listing

<110> 南京医科大学<110> Nanjing Medical University

<120> 抗新型冠状病毒SARS-Cov-2的中和性抗体及其应用<120> Neutralizing antibody against novel coronavirus SARS-Cov-2 and its application

<160> 2<160> 2

<170> SIPOSequenceListing 1.0<170> SIPOSequenceListing 1.0

<210> 1<210> 1

<211> 714<211> 714

<212> DNA<212> DNA

<213> 人工序列(Artificial Sequence)<213> Artificial Sequence

<400> 1<400> 1

gaggtgcagc tgttggagtc tgggggaggc ttggtacagc ctggggggtc cctgagactc 60gaggtgcagc tgttggagtc tgggggaggc ttggtacagc ctggggggtc cctgagactc 60

tcctgtgcag cctctggatt cacctttagc agctatgcca tgagctgggt ccgccaggct 120tcctgtgcag cctctggatt cacctttagc agctatgcca tgagctgggt ccgccaggct 120

ccagggaagg ggctggagtg ggtctcatct attgcttctt ctggttatta tacagattac 180ccaggggaagg ggctggagtg ggtctcatct attgcttctt ctggttatta tacagattac 180

gcagactccg tgaagggccg gttcaccatc tccagagaca attccaagaa cacgctgtat 240gcagactccg tgaagggccg gttcaccatc tccagagaca attccaagaa cacgctgtat 240

ctgcaaatga acagcctgag agccgaggac acggccgtat attactgtgc gaaagatgct 300ctgcaaatga acagcctgag agccgaggac acggccgtat attactgtgc gaaagatgct 300

gattcttttg actactgggg ccagggaacc ctggtcaccg tctcgagcgg tggaggcggt 360gattcttttg actactgggg ccagggaacc ctggtcaccg tctcgagcgg tggaggcggt 360

tcaggcggag gtggcagcgg cggtggcggg tcggacatcc agatgaccca gtctccatcc 420tcaggcggag gtggcagcgg cggtggcggg tcggacatcc agatgaccca gtctccatcc 420

tccctgtctg catctgtagg agacagagtc accatcactt gccgggcaag tcagagcatt 480tccctgtctg catctgtagg agacagagtc accatcactt gccgggcaag tcagagcatt 480

agcagctatt taaattggta tcagcagaaa ccagggaaag cccctaagct cctgatctat 540agcagctatt taaattggta tcagcagaaa ccaggaaag cccctaagct cctgatctat 540

gctgcatcct atttgcaaag tggggtccca tcaaggttca gtggcagtgg atctgggaca 600gctgcatcct atttgcaaag tggggtccca tcaaggttca gtggcagtgg atctgggaca 600

gatttcactc tcaccatcag cagtctgcaa cctgaagatt ttgcaactta ctactgtcaa 660gatttcactc tcaccatcag cagtctgcaa cctgaagatt ttgcaactta ctactgtcaa 660

caggcttatt ctgctccttc tacgttcggc caagggacca aggtggaaat caaa 714caggcttatt ctgctccttc tacgttcggc caagggacca aggtggaaat caaa 714

<210> 2<210> 2

<211> 238<211> 238

<212> PRT<212> PRT

<213> 人工序列(Artificial Sequence)<213> Artificial Sequence

<400> 2<400> 2

Glu Val Gln Leu Leu Glu Ser Gly Gly Gly Leu Val Gln Pro Gly GlyGlu Val Gln Leu Leu Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly

1 5 10 151 5 10 15

Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser TyrSer Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr

20 25 30 20 25 30

Ala Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp ValAla Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val

35 40 45 35 40 45

Ser Ser Ile Ala Ser Ser Gly Tyr Tyr Thr Asp Tyr Ala Asp Ser ValSer Ser Ile Ala Ser Ser Gly Tyr Tyr Thr Asp Tyr Ala Asp Ser Val

50 55 60 50 55 60

Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu TyrLys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr

65 70 75 8065 70 75 80

Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr CysLeu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys

85 90 95 85 90 95

Ala Lys Asp Ala Asp Ser Phe Asp Tyr Trp Gly Gln Gly Thr Leu ValAla Lys Asp Ala Asp Ser Phe Asp Tyr Trp Gly Gln Gly Thr Leu Val

100 105 110 100 105 110

Thr Val Ser Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Gly GlyThr Val Ser Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Gly Gly

115 120 125 115 120 125

Gly Gly Ser Asp Ile Gln Met Thr Gln Ser Pro Ser Ser Leu Ser AlaGly Gly Ser Asp Ile Gln Met Thr Gln Ser Pro Ser Ser Leu Ser Ala

130 135 140 130 135 140

Ser Val Gly Asp Arg Val Thr Ile Thr Cys Arg Ala Ser Gln Ser IleSer Val Gly Asp Arg Val Thr Ile Thr Cys Arg Ala Ser Gln Ser Ile

145 150 155 160145 150 155 160

Ser Ser Tyr Leu Asn Trp Tyr Gln Gln Lys Pro Gly Lys Ala Pro LysSer Ser Tyr Leu Asn Trp Tyr Gln Gln Lys Pro Gly Lys Ala Pro Lys

165 170 175 165 170 175

Leu Leu Ile Tyr Ala Ala Ser Tyr Leu Gln Ser Gly Val Pro Ser ArgLeu Leu Ile Tyr Ala Ala Ser Tyr Leu Gln Ser Gly Val Pro Ser Arg

180 185 190 180 185 190

Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr Ile Ser SerPhe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr Ile Ser Ser

195 200 205 195 200 205

Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln Ala Tyr SerLeu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln Ala Tyr Ser

210 215 220 210 215 220

Ala Pro Ser Thr Phe Gly Gln Gly Thr Lys Val Glu Ile LysAla Pro Ser Thr Phe Gly Gln Gly Thr Lys Val Glu Ile Lys

225 230 235225 230 235

Claims (10)

1.一种抗新型冠状病毒SARS-Cov-2的中和性抗体,所述抗体包括重链和轻链,其特征是,所述抗体至少具有以下技术特征之一:1. a kind of neutralizing antibody against novel coronavirus SARS-Cov-2, described antibody comprises heavy chain and light chain, it is characterized in that, described antibody has at least one of following technical characteristics: i、所述重链包括重链CDR1,其氨基酸序列为:GFTFSSYA;i, the heavy chain includes the heavy chain CDR1, and its amino acid sequence is: GFTFSSYA; ii、所述重链包括重链CDR2,其氨基酸序列为:SIASSGYYTD;ii, the heavy chain includes the heavy chain CDR2, and its amino acid sequence is: SIASSGYYTD; iii、所述重链包括重链CDR3,其氨基酸序列为:KDADS;iii, the heavy chain includes heavy chain CDR3, and its amino acid sequence is: KDADS; iv、所述轻链包括轻链CDR1,其氨基酸序列为:ISSYL;iv, the light chain includes light chain CDR1, and its amino acid sequence is: ISSYL; v、所述轻链包括轻链CDR2,其氨基酸序列为:AASYL;v, the light chain includes the light chain CDR2, and its amino acid sequence is: AASYL; vi、所述轻链包括轻链CDR3,其氨基酸序列为:AYSAPS。vi. The light chain includes light chain CDR3, and its amino acid sequence is: AYSAPS. 2.根据权利要求1所述的中和性抗体,其特征是,所述抗体至少具有以下技术特征之一:2. The neutralizing antibody according to claim 1, wherein the antibody has at least one of the following technical characteristics: i、所述重链包括重链CDR1,其氨基酸序列为:GFTFSSYA;所述重链包括重链CDR2,其氨基酸序列为:SIASSGYYTD;所述重链还包括重链CDR3,其氨基酸序列为:KDADS;i. The heavy chain includes heavy chain CDR1, whose amino acid sequence is: GFTFSSYA; the heavy chain includes heavy chain CDR2, whose amino acid sequence is: SIASSGYYTD; the heavy chain also includes heavy chain CDR3, whose amino acid sequence is: KDADS ; ii、所述轻链包括轻链CDR1,其氨基酸序列为:ISSYL;所述轻链包括轻链CDR2,其氨基酸序列为:AASYL;所述轻链还包括轻链CDR3,其氨基酸序列为:AYSAPS。ii, the light chain includes light chain CDR1, and its amino acid sequence is: ISSYL; the light chain includes light chain CDR2, and its amino acid sequence is: AASYL; the light chain also includes light chain CDR3, and its amino acid sequence is: AYSAPS . 3.根据权利要求1所述的中和性抗体,其特征是,所述抗体的氨基酸序列如SEQ ID NO:2所示。3. The neutralizing antibody according to claim 1, wherein the amino acid sequence of the antibody is shown in SEQ ID NO:2. 4.根据权利要求1所述的中和性抗体,其特征是,所述抗体为VH单域结构抗体、Fab片段、Fab′片段、F(ab)′2片段、单链可变区片段scFv、二硫化合物稳定的可变区片段dsFv、IgG分子、或双特异性抗体。4. The neutralizing antibody according to claim 1, wherein the antibody is a VH single-domain structure antibody, Fab fragment, Fab' fragment, F(ab)' 2 fragment, single-chain variable region fragment scFv , a disulfide stabilized variable region fragment dsFv, an IgG molecule, or a bispecific antibody. 5.根据权利要求1所述的中和性抗体,其特征是,所述抗体具有标记,所述标记包括荧光标记、酶标记、以及放射性标记。5 . The neutralizing antibody according to claim 1 , wherein the antibody has a label, and the label includes a fluorescent label, an enzymatic label, and a radioactive label. 6 . 6.编码权利要求1至5任一项所述抗新型冠状病毒SARS-Cov-2的中和性抗体的核酸。6. The nucleic acid encoding the neutralizing antibody of the anti-novel coronavirus SARS-Cov-2 according to any one of claims 1 to 5. 7.根据权利要求6所述的核酸,其特征是,所述核酸的序列如SEQ ID NO:1所示。7. The nucleic acid according to claim 6, wherein the sequence of the nucleic acid is shown in SEQ ID NO:1. 8.权利要求1至5任一项所述抗新型冠状病毒SARS-Cov-2的中和性抗体用于制备诊断试剂或诊断试剂盒、药物或药物组合物的用途。8. Use of the neutralizing antibody against the novel coronavirus SARS-Cov-2 described in any one of claims 1 to 5 for the preparation of diagnostic reagents or diagnostic kits, medicines or pharmaceutical compositions. 9.权利要求6或7所述核酸用于制备抗新型冠状病毒SARS-Cov-2的中和性抗体、药物或药物组合物的用途。9. the purposes of the nucleic acid described in claim 6 or 7 for preparing the neutralizing antibody, medicine or pharmaceutical composition of anti-novel coronavirus SARS-Cov-2. 10.根据权利要求8或9所述的用途,其特征是,所述药物或药物组合物具有针对新型冠状病毒SARS-Cov-2的中和性抗病毒作用。10. The use according to claim 8 or 9, wherein the medicine or the pharmaceutical composition has a neutralizing antiviral effect against the novel coronavirus SARS-Cov-2.
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