Detailed Description
Embodiments of the present invention will be described in detail below with reference to examples, but those skilled in the art will appreciate that the following examples are only illustrative of the present invention and should not be construed as limiting the scope of the present invention. The examples, in which specific conditions are not specified, were conducted under conventional conditions or conditions recommended by the manufacturer. The reagents or instruments used are not indicated by the manufacturer, and are all conventional products commercially available.
The low-pathogenicity avian influenza virus A/Chiken/Shanghai/F/98 strain (H9N2, abbreviated as F/98 strain) serving as an H9N2 subtype vaccine is selected in the embodiment of the invention, the strain is separated and purified by a livestock and poultry infectious disease focus open laboratory of Yangzhou university department of agriculture, is identified as the H9N2 subtype by the national influenza center, and has a whole gene sequence of AY253750-AY 253756.
8 plasmid virus rescue systems pHW2000 was offered by Robert Webster doctor of St.Jude Children research Hospital, USA.
Example 1: extraction of F/98-strain RNA
Inoculating F/98 strain to SPF chick embryo, collecting allantoic fluid 300ml, centrifuging at 6000rpm (30# rotor) for 15min, and collecting supernatant; 18000rpm was centrifuged at 4 ℃ for 1.5 hours, and the pellet was suspended with 40ml STE (10mM pH8.0Tris-HCl, 100mM NaCl, 5mM pH8.0 EDTA). Bedding with 10% sucrose, carefully adding the suspension, centrifuging at 18000rpm for 1.5h at 4 ℃ to remove protein, discarding the supernatant, suspending the precipitate with 30mL STE, centrifuging at 18000rpm for 1h at 4 ℃ to remove sucrose, suspending the precipitate with 7mL STE, and packaging into finger tubes with 450. mu.L each tube.
Using Shanghai bioengineering technology servicesRNA was extracted using an RNA extraction kit from Co., Ltd. Adding 300 mu L of virus allantoic fluid into 400 mu L of Trizol, and mixing well; adding 100. mu.L chloroform/isoamyl alcohol (24: 1), shaking for 30 seconds, and centrifuging at 12,000rpm for 5 minutes; transferring the supernatant into a sterile 1.5mL RNase-free centrifuge tube, adding 150 mu L of absolute ethyl alcohol, and uniformly mixing; placing in MNIQ-10 column, placing for 2 minutes at room temperature, and centrifuging for 1 minute at 8,000 rpm; discarding the waste liquid, adding 450 mu LSolution RPE into the column, 10,000rpm, and centrifuging for 30 seconds; repeating the previous step once; discarding the waste liquid, 10,000rpm, centrifuging for 15 seconds; transferring the column into a sterile, RNase-free centrifuge tube, and adding 50. mu.L DEPC-H to the center of the column2O, standing at 55-80 ℃ for 2 minutes at 10,000rpm, centrifuging for 1 minute, and collecting the solution in the tube to obtain the RNA sample.
Example 2 amplification, cloning and sequencing of 8 genes of F/98 Strain
Primers were designed to amplify 8 gene sequences of F/98 strain and sequenced.
The primer sequences for amplifying 8 internal genes of the F/98 strain are as follows:
Bm-HA-1 5’-TATTCGTCTCAGGGAGCAAAAGCAGGGG-3’,
Bm-HA-2 5-ATATCGTCTCGTATTAGTAGAAACAAGGGTGTTTT-3’。
Bm-NA-1 5’-TATTCGTCTCAGGGAGCAAAAGCAGGAGT-3’;
Bm-NA-2 5’-ATATCGTCTCGTATTAGTAGAAACAAGGAGTTTTTT-3’,
Bm-PB1-1 5’-TATTCGTCTCAGGGAGCGAAAGCAGGCA-3’;
Bm-PB1-2 5’-ATATCGTCTCGTATTAGTAGAAACAAGGCATTT-3’,
Bm-PA-1 5’-TATTCGTCTCAGGGAGCGAAAGCAGGTACTGAT-3’;
Bm-PA-2 5’-ATATCGTCTCGTATTAGTAGAAACAAGGTACTTTT-3’,
Bm-NP-1 5’-TATTCGTCTCAGGGAGCA AAAGCAGGGTAGATAATC-3’;
Bm-NP-2 5’-ATATCGTCTCGTATTAGTAGAAACAAGGGTATTTTTC-3’;
Bm-PB2-1 5’-TATTCGTCTCAGGGAGCGAAAGCAGGTC-3’;
Bm-PB2-2 5’-ATATCGTCTCGTATTAGTAGAAACAAGGTCGTTT-3’,
Bm-M-1 5’-TATTCGTCTCAGGGAGCAAAAGCAGGTAG-3’;
Bm-M-2 5’-ATATCGTCTCGTATTAGTAGAAACAAGGTAGTT TTT-3’,
Bm-NS-1 5’-TATTCGTCTCAGGGAGCAAAAGCAGGGTG-3’;
Bm-NS-2 5’-ATATCGTCTCGTATTAGTAGAAACAAGGGTGTTTT-3’。
the general primer is as follows: 12uni5 '-AGCAAAAGCAGG-3'
In order to facilitate the cloning of the above 8 gene fragments into a transcription/expression vector (BsmBI enzyme cutting sites are arranged on the transcription/expression vector), when primers of PCR amplified gene fragments are designed, the cloned enzyme cutting sites BsmBI sites are added at the 5' ends of the upstream and downstream primers, the BsmBI sites are abbreviated as Bm, and the underlined parts are recognition sites of corresponding enzymes. In addition, 12nt, which is present at the 5' -end of all the fragment cDNAs, was designed as a universal primer (12uni) for Reverse Transcription (RT) and used for reverse transcription. All primers were synthesized by Takara Shuzo (Dalian) Co., Ltd.
Reverse transcription F/98 strain whole genome (25. mu.l reaction system):
15 μ L of the F/98 strain genomic RNA extracted above is taken respectively, 1 μ L of 50 pmol/L12 nt primer is added for denaturation at 70 ℃ for 5min, the mixture is immediately placed at 0 ℃, and then the following reagents are added in sequence:
acting at 42 deg.C for 1 hr, and using immediately or placing at-20 deg.C for use.
Polymerase Chain Reaction (PCR) amplified full-length fragments of 8 genes (50 μ L reaction):
take 10. mu.L of the above RT product (cDNA) to 0.5mL PCR reaction tube, wherein the PB2 fragment was amplified using primers: Bm-PB2-1, Bm-PB 2-2; primers were used for amplification of PB1 fragment: Bm-PB1-1, Bm-PB 1-2; primers were used for amplification of PA fragments: Bm-PA-1, Bm-PA-2; primers were used for amplification of HA fragments: Bm-HA-1, Bm-HA-2; primers were used for amplification of NP fragments: Bm-NP-1, Bm-NP-2; primers were used for amplification of NA fragments: Bm-NA-1, Bm-NA-2; primers were used for amplification of M fragments: Bm-M-1, Bm-M-2; primers were used for amplification of NS fragments: Bm-NS-1, Bm-NS-2; the following reagents were added in sequence:
transient centrifugation, pre-denaturation at 94 ℃ for 5min, and addition of 0.5. mu.L (2.5U) of Expand High Fidelity polymerase at 75-80 ℃. 30 cycles of 94 ℃ for 40s, 58 ℃ for 35s and 72 ℃ for 2 min. Finally, extension was carried out at 72 ℃ for 7 minutes and run at 4 ℃ for 10 min. Taking 5 mu L of PCR product, and carrying out electrophoresis identification by using 0.8% agarose gel. The electrophoretic identification result is shown in FIG. 2.
Cloning, identification and sequencing of the PCR products:
and (3) carrying out electrophoretic identification on the PCR product, carrying out electrophoresis on the rest product, cutting Gel containing target fragments, recovering by using an agarose Gel DNA Extraction Kit, connecting with pGEM-T easy vector, transforming to escherichia coli JM109 competent cells, carrying out enzyme digestion identification on the escherichia coli JM109 competent cells, and simultaneously carrying out sequencing on the PCR product and the product connected with the T vector by bio-engineering (Shanghai) corporation.
RT-PCR amplified fragments were spliced into the full sequence of each gene using DNASTAR 11.0 software, with EditSeq editing sequences, Clustal method in MegAlign. The whole gene sequence of the F/98 strain is registered in GenBank with the registration numbers AY253750-AY 253756.
Example 3 construction of transcription/expression vector plasmid for the 8 genes of strain F/98:
in 8 plasmid transcription/expression vector pHW2000, F/98 strain 8 internal gene (PB2, PB1, PA, HA, NP, M, NS, NA) cDNAs were inserted to form 8 reassortant plasmids: pHW202-PB2, pHW202-PB1, pHW203-PA, pHW204-HA, pHW205-NP, pHW206-NA, pHW207-M, and pHW 208-NS.
The correct sequence was selected for cloning into the 8 plasmid transcription/expression vector pHW2000 by sequence analysis. First, 6 internal genes of F/98 strain, NA gene of D3 strain and 8 plasmid transcription/expression vector pHW2000 were digested with BsmBI, which was digested in the following manner (40. mu.L), and 5. mu.L of plasmid DNA (0.3. mu.g/. mu.L) was taken. The reaction is carried out for 4 hours at 55 ℃.
The enzyme digestion fragment and the vector are respectively subjected to gel electrophoresis and recovery, then are connected by T4DNA ligase, are transformed into escherichia coli JM109 competent cells, colonies are selected for amplification culture, plasmids are extracted in small quantity, corresponding plasmids with standard sizes in an 8 plasmid system are used as a reference, gel electrophoresis is carried out, and the fragments with consistent sizes are preliminarily identified as positive clones, and are frozen and stored at the temperature of minus 20 ℃.
EXAMPLE 4 construction of transcription/expression vector plasmid for PB2 Point mutation Gene
Using pHW202-PB2 of F/98 strain as a template to design a PCR primer pair pHW-PB2-185-1, and pHW-PB2-185-2 to mutate 554 site nucleotide to A on PB2 gene, so that 185 site amino acid of PB2 gene is mutated from I to K (I185K); the primer pairs are as follows:
pHW-PB2-185-1:CAGAATCGCAATTGACAAAAACAAA
pHW-PB2-185-2:TCAATTGCGATTCTGATGTCAATA
the following reagents were added in sequence:
transient centrifugation, pre-denaturation at 94 ℃ for 5min, and addition of 0.5. mu.L (2.5U) of Expand High Fidelity polymerase at 75-80 ℃. 30 cycles of 94 ℃ for 40s, 58 ℃ for 35s and 72 ℃ for 2 min. Finally, extension was carried out at 72 ℃ for 10 minutes and run at 4 ℃ for 10 min.
Taking the PCR product, identifying by 1% agarose gel electrophoresis, and recovering the gel. Homologous recombination was performed according to the instructions of the Novozam homologous recombination kit. Firstly, the following reagents are sequentially added under the ice bath condition according to the following system:
the recombinant plasmid is transformed into competent cells of Escherichia coli JM109, colonies are selected for amplification culture, and a small amount of the plasmid is extracted, amplified by PCR and sequenced (figure 3), so that the plasmid is identified as a positive clone and frozen at-20 ℃.
Example 5 rescue and identification of PB2 Point mutant avian influenza Virus
Preparation of plasmids for transfection and cells for transfection:
plasmids from strain F/98: pHW202-PB1, pHW203-PA, pHW205-NP, pHW207-M, pHW208-NS and PB2 gene plasmid pHW-PB2-185 containing point mutation respectively are enlarged and cultured, plasmid is extracted by a small plasmid-upgrading kit of QIAGEN company, and the content and purity are measured, and high-purity plasmid is prepared for transfection. The 293T cells with good growth status were digested and counted as 106Cell concentrations per well were plated in 24-well cell culture plates overnight.
Virus rescue:
8 plasmids from F/98 strain: pHW201-PB2, pHW202-PB1, pHW203-PA, pHW205-NP and pHW207-M, pHW208-NS are respectively mixed with plasmids pHW-PB2-185 and pHW-PB2-355 containing PB2 point mutation according to the ratio of 1: 1. Transfection according to QIAGEN transfection reagent protocol: the mixed plasmid and transfection reagent are added into 293T cells, and the cells are placed in a medium containing 5% CO2Culturing in an incubator at 37 ℃ for 24h, scraping transfected cells, and inoculating SPF (specific pathogen free) chick embryos of 10 days old; after culturing for 48h, harvesting allantoic fluid, continuously inoculating SPF chick embryos of 10 days old, observing death and lesion conditions of the chick embryos every day, collecting allantoic fluid of the chick embryos at proper time for virus identification, wherein the rescued virus is called rFPB2-1185 for short, and rFPB2-R355K strain avian influenza virus.
Virus identification:
hemagglutination tests for avian influenza virus were performed according to the OIE standard: the allantoic fluid hemagglutination titer of the inoculated first-generation 10-day-old SPF chick embryo reaches 28(ii) a Diluting allantoic fluid of first-generation 10-day-old SPF chick embryo by 103~105The maximum blood coagulation titer is 2 after the 10-day-old SPF chick embryos are inoculated in a sterile way and subcultured11。
Sequence identification: the genes PB2 and HA of rFPB2-I185K and rFPB2-R355K strain avian influenza virus obtained by RT-PCR method were identified by Biotechnology engineering (Shanghai) GmbH, and the method is shown in example 2. As a result, 7 genes other than the PB2 gene were F/98-related genes, K was found at position 185 of the PB2 gene of rFPB2-1185K strain, and K was found at position 355 of the PB2 gene of rFPB2-R355K strain.
Example 6 stability assay of mutations in the PB2 Gene of rFPB2-I185K and rFPB2-R355K strains of avian influenza Virus in SPF chick embryos
The stability of the rFPB2-1185K and rFPB2-R355K strains of avian influenza virus in SPF chick embryo passage is tested, and F/98 strains are used as controls:
allantoic fluid of first-generation 10-day-old SPF chick embryos inoculated with transfected 293T cells and having HA hemagglutination titer of 28(ii) a Continuously transferring allantoic fluid of first generation 10 day-old SPF chick embryo for 20 generations, and diluting allantoic fluid of previous generation for 10 generations each time5The HA titer is 8-10 in 1-15 generations and reaches 2 in the allantoic fluid of chick embryo in the 20 th generation11(1: 2048) (Table 1).
The PB2 genes of the F/98 strain, the rFPB2-I185K and the rFPB2-R355K strains of the avian influenza virus of the 20 th generation in SPF chick embryos are obtained by an RT-PCR method and are sequenced by a company Limited in Biotechnology engineering (Shanghai), and the result proves that the 554 th nucleotide of the PB2 gene of the F/98 strain is still T and the 1064 th nucleotide is G; the 554 th nucleotide of PB2 gene of rFPB2-I185K is A, and the 1064 th nucleotide of PB2 gene of rFPB2-R355K strain avian influenza virus is A. The results show that the mutation of rFPB2-I185K and rFPB2-R355K strain avian influenza virus is not changed after passage.
TABLE 1 HA Titers of rFPB2-I185K and rFPB2-R355K avian influenza Virus passaged in SPF chick embryos (2)n)
Example 7F/98 and rFPB2-I185K and rFPB2-R355K avian influenza Virus half the infection in chick Embryos (EID)50Replication titer) assay
Allantoic fluids of test viruses (F/98 and rFPB2-1185K) were made 10 separately with tetra-resistant PBS-1~10-20Multiple ofAnd (4) specific dilution. 5 SPF chick embryos of 10 days old are inoculated per dilution, 0.2mL per chick, and incubated at 37 ℃. The dead embryos within 24h are discarded, and allantoic fluid of dead and non-dead chick embryos is aseptically harvested for 24h to 120 h. Detecting the hemagglutination titer (HA) of allantoic fluid of virus subjected to chick embryo half infection quantity measurement, wherein the HA titer of each virus is more than or equal to 23The test was judged to be positive (Table 2), and calculated according to the Reed-Muench formula. The results showed that EID of rFPB2-1185K strain50Is 10-16.6250.2mL, and the EID of the parental virus F/98 strain50Is 10-6.670.2mL, EID of mutant rFPB2-I185K compared to parental virus F/9850Is improved by 9X 109Multiple (P < 0.001). The result shows that the I185K amino acid in the PB2 gene can obviously improve the replication titer of the H9N2 influenza virus in chick embryo allantoic fluid through two amino acid point mutations on PB 2.
Table 2: rFPB2-I185K and rFPB2-R355K avian influenza virus EID50Detecting dilution
While specific embodiments of the invention have been described in detail, those skilled in the art will understand that. Various modifications and alterations of those details may be made in light of the overall teachings of the disclosure, and are within the scope of the invention. The full scope of the invention is given by the appended patent claims and any equivalents thereof.
Sequence listing
<110> Yangzhou university
<120> recombinant H9N2 avian influenza virus strain, preparation method thereof, avian influenza vaccine and application thereof
<160> 21
<170> SIPOSequenceListing 1.0
<210> 1
<211> 2341
<212> DNA
<213> PB2-185 mutant Gene (PB2-185)
<400> 1
agcgaaagca ggtcaaatat attcagtatg gagagaataa aagaattaag agatctaatg 60
tcgcaatccc gcacccgcga gatactaaca aaaaccactg tggaccatat ggccataatc 120
aagaagtaca catcaggaag acaagagaag aaccctgctc tcagaatgaa atggatgatg 180
gctatgaaat atccaatcac agcagacaag agaataatgg agatgattcc cgaaaggaat 240
gagcaagggc aaacgctttg gagcaagaca aatgatgctg gatcggacag ggtgatggtg 300
tctcccctag ctgtaacttg gtggaacagg aatgggccaa caacaagtac agtccattac 360
ccaaaggttt acaaaacata ctttgagaag gttgagaggt taaagcatgg aacctttggt 420
cccgttcact tccgaaatca agttaaaata cgccgccggg ttgatataaa cccgggtcat 480
gcagatctca gtgctaaaga agcacaagat gttatcatgg aggtcgtttt cccaaatgaa 540
gtgggagcta gaaaattgac atcagaatcg caattgacaa aaacaaaaga gaagaaagaa 600
gagctccagg attgtaagat tgctccttta atggtggcat acatgttgga aagagaactg 660
gtccggaaaa ccagattcct accggtagca ggtggaacaa gcagtgtata cattgaagta 720
ttgcatttga ctcaagggac ctgctgggaa cagatgtaca ctccaggcgg agaagtgaga 780
aatgatgatg ttgaccagag tttgatcatt gctgccagaa atattgttag gagatcaacg 840
gtgtcagcag atccattggc atcactatta gagatgtgcc acagcacaca aattggtggg 900
ataaggatgg tggacatcct taggcaaaat ccaactgagg aacaagctgt ggatatatgc 960
aaagcagcaa tgggattgag gatcagttca tcttttagct ttggaggatt cactttcaaa 1020
agaacaagtg ggtcatctgt caagaaggaa gaggaagtgc ttacgggcaa cctccaaaca 1080
ctgaaaataa gagtacatga ggggtatgag gaattcacaa tggttgggcg gagagcaaca 1140
gctatcctga ggaaagcaac cagaaggctg attcagctga tagtaagtgg aagagatgaa 1200
caatcaatcg ctgaagcgat cattgtagca atggtgttct cacaggaaga ttgcatgata 1260
aaagcagtca gaggtgatct gaatttcgta aatagagcaa atcaaaggtt aaaccccatg 1320
catcaactcc ttaggcactt ccaaaaagat gcaaaggtgc tatttcagaa ctggggaatt 1380
gaacctattg acgatgtcat ggggatgatc ggactattac ctgacatgac tccaagcaca 1440
gaaatgtcac tgagaggagt aagagttagt aaaatggggg tggatgaata ttccagcact 1500
gagagagtgg ttgtaagtat tgaccgtttc ttaagggttc gagatcagcg ggggaacgta 1560
ctcttatccc ccgaagaggt cagcgaaaca caggggactg agaaattgac aataacatat 1620
tcatcaccaa tgatgtggga aatcaacggt cctgaatcag tgcttgttaa cacctatcaa 1680
tggatcatca gaaattggga aactgtgaag attcaatggt ctcaagaccc aacaatgctg 1740
tacaataaga tggagtttga accgttccaa tccttggtgc ctaaagctgc cagaggtcaa 1800
tacagtggat ttgtgagaac actattccaa cagatgcgtg acgtattggg aacatttgat 1860
actgtacaga taataaagct gctaccattt gcagcagccc caccggagca gagcagaatg 1920
cagttttctt ctctaactgt gaatgtgaga ggctcgggaa tgaggatact cgtaagggga 1980
aactcccccg tgttcaacta taataaggca accaaaaggc ttaccgttct tggaaaggat 2040
gcaggtgcat taacagaaga tccagatgag ggaacagcag gagtggaatc tgcagtactg 2100
aggggattcc taattctagg caaggaggac aaaaggtatg gaccagcatt gagcatcaat 2160
gaactgagca atcttgcgaa aggggagaaa gctaatgtgc ttatagggca aggagacgtg 2220
gtgttggtaa tgaaacggaa acgggactct agcatactta ctgacagcca gacagcgacc 2280
aaaaggattc ggatggccat caattagtgt cgaattgttt aaaaacgacc ttgtttctac 2340
t 2341
<210> 2
<211> 759
<212> PRT
<213> PB2-185 mutant protein (PB2-185)
<400> 2
Met Glu Arg Ile Lys Glu Leu Arg Asp Leu Met Ser Gln Ser Arg Thr
1 5 10 15
Arg Glu Ile Leu Thr Lys Thr Thr Val Asp His Met Ala Ile Ile Lys
20 25 30
Lys Tyr Thr Ser Gly Arg Gln Glu Lys Asn Pro Ala Leu Arg Met Lys
35 40 45
Trp Met Met Ala Met Lys Tyr Pro Ile Thr Ala Asp Lys Arg Ile Met
50 55 60
Glu Met Ile Pro Glu Arg Asn Glu Gln Gly Gln Thr Leu Trp Ser Lys
65 70 75 80
Thr Asn Asp Ala Gly Ser Asp Arg Val Met Val Ser Pro Leu Ala Val
85 90 95
Thr Trp Trp Asn Arg Asn Gly Pro Thr Thr Ser Thr Val His Tyr Pro
100 105 110
Lys Val Tyr Lys Thr Tyr Phe Glu Lys Val Glu Arg Leu Lys His Gly
115 120 125
Thr Phe Gly Pro Val His Phe Arg Asn Gln Val Lys Ile Arg Arg Arg
130 135 140
Val Asp Ile Asn Pro Gly His Ala Asp Leu Ser Ala Lys Glu Ala Gln
145 150 155 160
Asp Val Ile Met Glu Val Val Phe Pro Asn Glu Val Gly Ala Arg Lys
165 170 175
Leu Thr Ser Glu Ser Gln Leu Thr Lys Thr Lys Glu Lys Lys Glu Glu
180 185 190
Leu Gln Asp Cys Lys Ile Ala Pro Leu Met Val Ala Tyr Met Leu Glu
195 200 205
Arg Glu Leu Val Arg Lys Thr Arg Phe Leu Pro Val Ala Gly Gly Thr
210 215 220
Ser Ser Val Tyr Ile Glu Val Leu His Leu Thr Gln Gly Thr Cys Trp
225 230 235 240
Glu Gln Met Tyr Thr Pro Gly Gly Glu Val Arg Asn Asp Asp Val Asp
245 250 255
Gln Ser Leu Ile Ile Ala Ala Arg Asn Ile Val Arg Arg Ser Thr Val
260 265 270
Ser Ala Asp Pro Leu Ala Ser Leu Leu Glu Met Cys His Ser Thr Gln
275 280 285
Ile Gly Gly Ile Arg Met Val Asp Ile Leu Arg Gln Asn Pro Thr Glu
290 295 300
Glu Gln Ala Val Asp Ile Cys Lys Ala Ala Met Gly Leu Arg Ile Ser
305 310 315 320
Ser Ser Phe Ser Phe Gly Gly Phe Thr Phe Lys Arg Thr Ser Gly Ser
325 330 335
Ser Val Lys Lys Glu Glu Glu Val Leu Thr Gly Asn Leu Gln Thr Leu
340 345 350
Lys Ile Arg Val His Glu Gly Tyr Glu Glu Phe Thr Met Val Gly Arg
355 360 365
Arg Ala Thr Ala Ile Leu Arg Lys Ala Thr Arg Arg Leu Ile Gln Leu
370 375 380
Ile Val Ser Gly Arg Asp Glu Gln Ser Ile Ala Glu Ala Ile Ile Val
385 390 395 400
Ala Met Val Phe Ser Gln Glu Asp Cys Met Ile Lys Ala Val Arg Gly
405 410 415
Asp Leu Asn Phe Val Asn Arg Ala Asn Gln Arg Leu Asn Pro Met His
420 425 430
Gln Leu Leu Arg His Phe Gln Lys Asp Ala Lys Val Leu Phe Gln Asn
435 440 445
Trp Gly Ile Glu Pro Ile Asp Asp Val Met Gly Met Ile Gly Leu Leu
450 455 460
Pro Asp Met Thr Pro Ser Thr Glu Met Ser Leu Arg Gly Val Arg Val
465 470 475 480
Ser Lys Met Gly Val Asp Glu Tyr Ser Ser Thr Glu Arg Val Val Val
485 490 495
Ser Ile Asp Arg Phe Leu Arg Val Arg Asp Gln Arg Gly Asn Val Leu
500 505 510
Leu Ser Pro Glu Glu Val Ser Glu Thr Gln Gly Thr Glu Lys Leu Thr
515 520 525
Ile Thr Tyr Ser Ser Pro Met Met Trp Glu Ile Asn Gly Pro Glu Ser
530 535 540
Val Leu Val Asn Thr Tyr Gln Trp Ile Ile Arg Asn Trp Glu Thr Val
545 550 555 560
Lys Ile Gln Trp Ser Gln Asp Pro Thr Met Leu Tyr Asn Lys Met Glu
565 570 575
Phe Glu Pro Phe Gln Ser Leu Val Pro Lys Ala Ala Arg Gly Gln Tyr
580 585 590
Ser Gly Phe Val Arg Thr Leu Phe Gln Gln Met Arg Asp Val Leu Gly
595 600 605
Thr Phe Asp Thr Val Gln Ile Ile Lys Leu Leu Pro Phe Ala Ala Ala
610 615 620
Pro Pro Glu Gln Ser Arg Met Gln Phe Ser Ser Leu Thr Val Asn Val
625 630 635 640
Arg Gly Ser Gly Met Arg Ile Leu Val Arg Gly Asn Ser Pro Val Phe
645 650 655
Asn Tyr Asn Lys Ala Thr Lys Arg Leu Thr Val Leu Gly Lys Asp Ala
660 665 670
Gly Ala Leu Thr Glu Asp Pro Asp Glu Gly Thr Ala Gly Val Glu Ser
675 680 685
Ala Val Leu Arg Gly Phe Leu Ile Leu Gly Lys Glu Asp Lys Arg Tyr
690 695 700
Gly Pro Ala Leu Ser Ile Asn Glu Leu Ser Asn Leu Ala Lys Gly Glu
705 710 715 720
Lys Ala Asn Val Leu Ile Gly Gln Gly Asp Val Val Leu Val Met Lys
725 730 735
Arg Lys Arg Asp Ser Ser Ile Leu Thr Asp Ser Gln Thr Ala Thr Lys
740 745 750
Arg Ile Arg Met Ala Ile Asn
755
<210> 3
<211> 2341
<212> DNA
<213> PB2-355 mutant Gene (PB2-355)
<400> 3
agcgaaagca ggtcaaatat attcagtatg gagagaataa aagaattaag agatctaatg 60
tcgcaatccc gcacccgcga gatactaaca aaaaccactg tggaccatat ggccataatc 120
aagaagtaca catcaggaag acaagagaag aaccctgctc tcagaatgaa atggatgatg 180
gctatgaaat atccaatcac agcagacaag agaataatgg agatgattcc cgaaaggaat 240
gagcaagggc aaacgctttg gagcaagaca aatgatgctg gatcggacag ggtgatggtg 300
tctcccctag ctgtaacttg gtggaacagg aatgggccaa caacaagtac agtccattac 360
ccaaaggttt acaaaacata ctttgagaag gttgagaggt taaagcatgg aacctttggt 420
cccgttcact tccgaaatca agttaaaata cgccgccggg ttgatataaa cccgggtcat 480
gcagatctca gtgctaaaga agcacaagat gttatcatgg aggtcgtttt cccaaatgaa 540
gtgggagcta gaatattgac atcagaatcg caattgacaa taacaaaaga gaagaaagaa 600
gagctccagg attgtaagat tgctccttta atggtggcat acatgttgga aagagaactg 660
gtccggaaaa ccagattcct accggtagca ggtggaacaa gcagtgtata cattgaagta 720
ttgcatttga ctcaagggac ctgctgggaa cagatgtaca ctccaggcgg agaagtgaga 780
aatgatgatg ttgaccagag tttgatcatt gctgccagaa atattgttag gagatcaacg 840
gtgtcagcag atccattggc atcactatta gagatgtgcc acagcacaca aattggtggg 900
ataaggatgg tggacatcct taggcaaaat ccaactgagg aacaagctgt ggatatatgc 960
aaagcagcaa tgggattgag gatcagttca tcttttagct ttggaggatt cactttcaaa 1020
agaacaagtg ggtcatctgt caagaaggaa gaggaagtgc ttacgggcaa cctccaaaca 1080
ctgaaaataa aagtacatga ggggtatgag gaattcacaa tggttgggcg gagagcaaca 1140
gctatcctga ggaaagcaac cagaaggctg attcagctga tagtaagtgg aagagatgaa 1200
caatcaatcg ctgaagcgat cattgtagca atggtgttct cacaggaaga ttgcatgata 1260
aaagcagtca gaggtgatct gaatttcgta aatagagcaa atcaaaggtt aaaccccatg 1320
catcaactcc ttaggcactt ccaaaaagat gcaaaggtgc tatttcagaa ctggggaatt 1380
gaacctattg acgatgtcat ggggatgatc ggactattac ctgacatgac tccaagcaca 1440
gaaatgtcac tgagaggagt aagagttagt aaaatggggg tggatgaata ttccagcact 1500
gagagagtgg ttgtaagtat tgaccgtttc ttaagggttc gagatcagcg ggggaacgta 1560
ctcttatccc ccgaagaggt cagcgaaaca caggggactg agaaattgac aataacatat 1620
tcatcaccaa tgatgtggga aatcaacggt cctgaatcag tgcttgttaa cacctatcaa 1680
tggatcatca gaaattggga aactgtgaag attcaatggt ctcaagaccc aacaatgctg 1740
tacaataaga tggagtttga accgttccaa tccttggtgc ctaaagctgc cagaggtcaa 1800
tacagtggat ttgtgagaac actattccaa cagatgcgtg acgtattggg aacatttgat 1860
actgtacaga taataaagct gctaccattt gcagcagccc caccggagca gagcagaatg 1920
cagttttctt ctctaactgt gaatgtgaga ggctcgggaa tgaggatact cgtaagggga 1980
aactcccccg tgttcaacta taataaggca accaaaaggc ttaccgttct tggaaaggat 2040
gcaggtgcat taacagaaga tccagatgag ggaacagcag gagtggaatc tgcagtactg 2100
aggggattcc taattctagg caaggaggac aaaaggtatg gaccagcatt gagcatcaat 2160
gaactgagca atcttgcgaa aggggagaaa gctaatgtgc ttatagggca aggagacgtg 2220
gtgttggtaa tgaaacggaa acgggactct agcatactta ctgacagcca gacagcgacc 2280
aaaaggattc ggatggccat caattagtgt cgaattgttt aaaaacgacc ttgtttctac 2340
t 2341
<210> 5
<211> 759
<212> PRT
<213> PB2-355 mutant protein (PB2-355)
<400> 5
Met Glu Arg Ile Lys Glu Leu Arg Asp Leu Met Ser Gln Ser Arg Thr
1 5 10 15
Arg Glu Ile Leu Thr Lys Thr Thr Val Asp His Met Ala Ile Ile Lys
20 25 30
Lys Tyr Thr Ser Gly Arg Gln Glu Lys Asn Pro Ala Leu Arg Met Lys
35 40 45
Trp Met Met Ala Met Lys Tyr Pro Ile Thr Ala Asp Lys Arg Ile Met
50 55 60
Glu Met Ile Pro Glu Arg Asn Glu Gln Gly Gln Thr Leu Trp Ser Lys
65 70 75 80
Thr Asn Asp Ala Gly Ser Asp Arg Val Met Val Ser Pro Leu Ala Val
85 90 95
Thr Trp Trp Asn Arg Asn Gly Pro Thr Thr Ser Thr Val His Tyr Pro
100 105 110
Lys Val Tyr Lys Thr Tyr Phe Glu Lys Val Glu Arg Leu Lys His Gly
115 120 125
Thr Phe Gly Pro Val His Phe Arg Asn Gln Val Lys Ile Arg Arg Arg
130 135 140
Val Asp Ile Asn Pro Gly His Ala Asp Leu Ser Ala Lys Glu Ala Gln
145 150 155 160
Asp Val Ile Met Glu Val Val Phe Pro Asn Glu Val Gly Ala Arg Ile
165 170 175
Leu Thr Ser Glu Ser Gln Leu Thr Ile Thr Lys Glu Lys Lys Glu Glu
180 185 190
Leu Gln Asp Cys Lys Ile Ala Pro Leu Met Val Ala Tyr Met Leu Glu
195 200 205
Arg Glu Leu Val Arg Lys Thr Arg Phe Leu Pro Val Ala Gly Gly Thr
210 215 220
Ser Ser Val Tyr Ile Glu Val Leu His Leu Thr Gln Gly Thr Cys Trp
225 230 235 240
Glu Gln Met Tyr Thr Pro Gly Gly Glu Val Arg Asn Asp Asp Val Asp
245 250 255
Gln Ser Leu Ile Ile Ala Ala Arg Asn Ile Val Arg Arg Ser Thr Val
260 265 270
Ser Ala Asp Pro Leu Ala Ser Leu Leu Glu Met Cys His Ser Thr Gln
275 280 285
Ile Gly Gly Ile Arg Met Val Asp Ile Leu Arg Gln Asn Pro Thr Glu
290 295 300
Glu Gln Ala Val Asp Ile Cys Lys Ala Ala Met Gly Leu Arg Ile Ser
305 310 315 320
Ser Ser Phe Ser Phe Gly Gly Phe Thr Phe Lys Arg Thr Ser Gly Ser
325 330 335
Ser Val Lys Lys Glu Glu Glu Val Leu Thr Gly Asn Leu Gln Thr Leu
340 345 350
Lys Ile Lys Val His Glu Gly Tyr Glu Glu Phe Thr Met Val Gly Arg
355 360 365
Arg Ala Thr Ala Ile Leu Arg Lys Ala Thr Arg Arg Leu Ile Gln Leu
370 375 380
Ile Val Ser Gly Arg Asp Glu Gln Ser Ile Ala Glu Ala Ile Ile Val
385 390 395 400
Ala Met Val Phe Ser Gln Glu Asp Cys Met Ile Lys Ala Val Arg Gly
405 410 415
Asp Leu Asn Phe Val Asn Arg Ala Asn Gln Arg Leu Asn Pro Met His
420 425 430
Gln Leu Leu Arg His Phe Gln Lys Asp Ala Lys Val Leu Phe Gln Asn
435 440 445
Trp Gly Ile Glu Pro Ile Asp Asp Val Met Gly Met Ile Gly Leu Leu
450 455 460
Pro Asp Met Thr Pro Ser Thr Glu Met Ser Leu Arg Gly Val Arg Val
465 470 475 480
Ser Lys Met Gly Val Asp Glu Tyr Ser Ser Thr Glu Arg Val Val Val
485 490 495
Ser Ile Asp Arg Phe Leu Arg Val Arg Asp Gln Arg Gly Asn Val Leu
500 505 510
Leu Ser Pro Glu Glu Val Ser Glu Thr Gln Gly Thr Glu Lys Leu Thr
515 520 525
Ile Thr Tyr Ser Ser Pro Met Met Trp Glu Ile Asn Gly Pro Glu Ser
530 535 540
Val Leu Val Asn Thr Tyr Gln Trp Ile Ile Arg Asn Trp Glu Thr Val
545 550 555 560
Lys Ile Gln Trp Ser Gln Asp Pro Thr Met Leu Tyr Asn Lys Met Glu
565 570 575
Phe Glu Pro Phe Gln Ser Leu Val Pro Lys Ala Ala Arg Gly Gln Tyr
580 585 590
Ser Gly Phe Val Arg Thr Leu Phe Gln Gln Met Arg Asp Val Leu Gly
595 600 605
Thr Phe Asp Thr Val Gln Ile Ile Lys Leu Leu Pro Phe Ala Ala Ala
610 615 620
Pro Pro Glu Gln Ser Arg Met Gln Phe Ser Ser Leu Thr Val Asn Val
625 630 635 640
Arg Gly Ser Gly Met Arg Ile Leu Val Arg Gly Asn Ser Pro Val Phe
645 650 655
Asn Tyr Asn Lys Ala Thr Lys Arg Leu Thr Val Leu Gly Lys Asp Ala
660 665 670
Gly Ala Leu Thr Glu Asp Pro Asp Glu Gly Thr Ala Gly Val Glu Ser
675 680 685
Ala Val Leu Arg Gly Phe Leu Ile Leu Gly Lys Glu Asp Lys Arg Tyr
690 695 700
Gly Pro Ala Leu Ser Ile Asn Glu Leu Ser Asn Leu Ala Lys Gly Glu
705 710 715 720
Lys Ala Asn Val Leu Ile Gly Gln Gly Asp Val Val Leu Val Met Lys
725 730 735
Arg Lys Arg Asp Ser Ser Ile Leu Thr Asp Ser Gln Thr Ala Thr Lys
740 745 750
Arg Ile Arg Met Ala Ile Asn
755
<210> 5
<211> 28
<212> DNA
<213> upstream primer (Bm-HA-1)
<400> 5
tattcgtctc agggagcaaa agcagggg 28
<210> 6
<211> 35
<212> DNA
<213> downstream primer (Bm-HA-2)
<400> 6
atatcgtctc gtattagtag aaacaagggt gtttt 35
<210> 7
<211> 29
<212> DNA
<213> upstream primer (Bm-NA-1)
<400> 7
tattcgtctc agggagcaaa agcaggagt 29
<210> 8
<211> 36
<212> DNA
<213> downstream primer (Bm-NA-2)
<400> 8
atatcgtctc gtattagtag aaacaaggag tttttt 36
<210> 9
<211> 28
<212> DNA
<213> upstream primer (Bm-PB1-1)
<400> 9
tattcgtctc agggagcgaa agcaggca 28
<210> 10
<211> 35
<212> DNA
<213> downstream primer (Bm-PA-2)
<400> 10
atatcgtctc gtattagtag aaacaaggta ctttt 35
<210> 11
<211> 36
<212> DNA
<213> upstream primer (Bm-NP-1)
<400> 11
tattcgtctc agggagcaaa agcagggtag ataatc 36
<210> 12
<211> 37
<212> DNA
<213> downstream primer (Bm-NP-2)
<400> 12
atatcgtctc gtattagtag aaacaagggt atttttc 37
<210> 13
<211> 28
<212> DNA
<213> upstream primer (Bm-PB2-1)
<400> 13
tattcgtctc agggagcgaa agcaggtc 28
<210> 14
<211> 34
<212> DNA
<213> downstream primer (Bm-PB2-2)
<400> 14
atatcgtctc gtattagtag aaacaaggtc gttt 34
<210> 15
<211> 29
<212> DNA
<213> upstream primer (Bm-M-1)
<400> 15
tattcgtctc agggagcaaa agcaggtag 29
<210> 16
<211> 36
<212> DNA
<213> downstream primer (Bm-M-2)
<400> 16
atatcgtctc gtattagtag aaacaaggta gttttt 36
<210> 17
<211> 29
<212> DNA
<213> upstream primer (Bm-NS-1)
<400> 17
tattcgtctc agggagcaaa agcagggtg 29
<210> 18
<211> 35
<212> DNA
<213> downstream primer (Bm-NS-2)
<400> 18
atatcgtctc gtattagtag aaacaagggt gtttt 35
<210> 19
<211> 12
<212> DNA
<213> random primer (12nt)
<400> 19
agcaaaagca gg 12
<210> 20
<211> 25
<212> DNA
<213> upstream primer (pHW-PB2-185-1)
<400> 20
cagaatcgca attgacaaaa acaaa 25
<210> 21
<211> 24
<212> DNA
<213> downstream primer (pHW-PB2-185-2)
<400> 21
tcaattgcga ttctgatgtc aata 24