CN107164350B - A kind of pyrazinamide hydrolase and its coding gene and application - Google Patents
A kind of pyrazinamide hydrolase and its coding gene and application Download PDFInfo
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- CN107164350B CN107164350B CN201710492190.7A CN201710492190A CN107164350B CN 107164350 B CN107164350 B CN 107164350B CN 201710492190 A CN201710492190 A CN 201710492190A CN 107164350 B CN107164350 B CN 107164350B
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- pyrazinamide
- hydrolase
- solution
- seq
- enzyme
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- 108090000623 proteins and genes Proteins 0.000 title claims abstract description 48
- IPEHBUMCGVEMRF-UHFFFAOYSA-N pyrazinecarboxamide Chemical compound NC(=O)C1=CN=CC=N1 IPEHBUMCGVEMRF-UHFFFAOYSA-N 0.000 claims abstract description 42
- 239000002773 nucleotide Substances 0.000 claims abstract description 10
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- 125000003275 alpha amino acid group Chemical group 0.000 claims abstract 3
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- NIPZZXUFJPQHNH-UHFFFAOYSA-N pyrazine-2-carboxylic acid Chemical compound OC(=O)C1=CN=CC=N1 NIPZZXUFJPQHNH-UHFFFAOYSA-N 0.000 claims description 13
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- BRPMXFSTKXXNHF-IUCAKERBSA-N (2s)-1-[2-[[(2s)-pyrrolidine-2-carbonyl]amino]acetyl]pyrrolidine-2-carboxylic acid Chemical compound OC(=O)[C@@H]1CCCN1C(=O)CNC(=O)[C@H]1NCCC1 BRPMXFSTKXXNHF-IUCAKERBSA-N 0.000 description 1
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Abstract
本发明公开了一种吡嗪酰胺水解酶及其编码基因和应用,该水解酶具有SEQ ID NO.1所示的氨基酸序列,编码基因为具有SEQ ID NO.2所示的核苷酸序列的DNA分子。本发明所述的吡嗪酰胺酶具有高酶活、pH耐受性好等优点,并为吡嗪酰胺与吡嗪酰胺酶联用治疗体内产生吡嗪酰胺耐药性的病人提供了治疗方向。The present invention discloses a pyrazinamide hydrolase, its encoding gene and its application. The hydrolase has the amino acid sequence shown in SEQ ID NO.1, and the encoding gene has the nucleotide sequence shown in SEQ ID NO.2. DNA molecule. The pyrazinamide enzyme of the present invention has the advantages of high enzyme activity, good pH tolerance, etc., and provides a therapeutic direction for the combined use of pyrazinamide and pyrazinamide enzyme in treating patients with pyrazinamide drug resistance in vivo.
Description
技术领域technical field
本发明属于生物技术领域,具体而言,涉及一种吡嗪酰胺水解酶及其编码基因和应用。The invention belongs to the field of biotechnology, and in particular relates to a pyrazinamide hydrolase, its coding gene and application.
背景技术Background technique
吡嗪酰胺是世界卫生组织推荐用于治疗结核病的一线药物之一。该药物本身没有抗菌活性,而是在病原菌体内被水解成吡嗪酸,从而在酸性pH环境中持续杀死存在于人群中结核杆菌的能力,可将治疗时间由9-12个月缩短至6个月。尽管吡嗪酰胺在治疗结核病方面的重要性已经被人们认可,但其作用机制可能是所有抗结核药物中最不了解的。Pyrazinamide is one of the first-line drugs recommended by the World Health Organization for the treatment of tuberculosis. The drug itself has no antibacterial activity, but is hydrolyzed into pyrazinoic acid in the pathogenic bacteria, so that it can continuously kill Mycobacterium tuberculosis existing in the crowd in an acidic pH environment, which can shorten the treatment time from 9-12 months to 6 months. months. Despite the recognized importance of pyrazinamide in the treatment of tuberculosis, its mechanism of action is perhaps the least understood of all anti-TB drugs.
目前,越来越多的耐药结核菌株的出现已经对吡嗪酰胺的抗菌活性构成主要挑战,吡嗪酰胺是没有显著抗菌活性的前体药物,被代谢为其活性形式——吡嗪酸,通过由吡嗪酰胺水解酶基因编码的水解酶活性水解生成吡嗪酸,用于杀死结核分枝杆菌。吡嗪酰胺水解酶中的突变是目前结核分枝杆菌中吡嗪酰胺抗性的主要机制。吡嗪酰胺水解酶已经在许多微生物中发现,例如大肠杆菌,酿酒酵母。该酶可将吡嗪酰胺转化为吡嗪酰酸。人们研究了某些细菌吡嗪酰胺水解酶的生物化学特征,并且已经很好地表征了结核分枝杆菌吡嗪酰胺水解酶MtPncA,但是在假诺卡氏菌(Pseudonocardia carboxydivorans)中吡嗪酰胺水解酶没并没有得到表征。Currently, the emergence of more and more drug-resistant tuberculosis strains has posed a major challenge to the antibacterial activity of pyrazinamide, a prodrug with no significant antibacterial activity that is metabolized to its active form, pyrazinic acid, It is hydrolyzed by the hydrolase activity encoded by the pyrazinamide hydrolase gene to produce pyrazinoic acid, which is used to kill Mycobacterium tuberculosis. Mutations in pyrazinamide hydrolase are currently the main mechanism of pyrazinamide resistance in Mycobacterium tuberculosis. Pyrazinamide hydrolase has been found in many microorganisms, such as Escherichia coli, Saccharomyces cerevisiae. This enzyme converts pyrazinamide to pyrazinoyl acid. The biochemical characterization of certain bacterial pyrazinamide hydrolases has been studied and the Mycobacterium tuberculosis pyrazinamide hydrolase MtPncA has been well characterized, but pyrazinamide hydrolysis in Pseudonocardia carboxydivorans The enzyme has not been characterized.
发明内容Contents of the invention
本发明人在Pseudonocardia carboxydivorans中发现了一个开放阅读框架(ORF),与MtPncA具有62%的序列同源性。发明人克隆并表达了该基因,意外发现其是一种活性较高的吡嗪酰胺水解酶,特别适合治疗已产生吡嗪酰胺耐药性的患结核病的人群。The present inventors discovered an open reading frame (ORF) in Pseudonocardia carboxydivorans, which has 62% sequence homology to MtPncA. The inventor cloned and expressed the gene, and unexpectedly found that it is a highly active pyrazinamide hydrolase, which is especially suitable for treating tuberculosis patients who have developed resistance to pyrazinamide.
因此,本发明的主要目的在于提供一种新的吡嗪酰胺水解酶及其编码基因和应用。为了实现本发明的目的,发明人通过大量试验研究并不懈努力,最终获得了如下技术方案:Therefore, the main purpose of the present invention is to provide a new pyrazinamide hydrolase and its coding gene and application. In order to achieve the purpose of the present invention, the inventor has made unremitting efforts through a large number of experimental studies, and finally obtained the following technical solutions:
一种吡嗪酰胺水解酶,该水解酶具有SEQ ID NO.1所示的氨基酸序列;或该水解酶是在SEQ ID NO.1所示的氨基酸序列基础上缺失、替换、插入或/和添加一个至几个氨基酸的保守性突变而获得的具有水解吡嗪酰胺活性的保守性变异体。A pyrazinamide hydrolase, the hydrolase has the amino acid sequence shown in SEQ ID NO.1; or the hydrolase is deleted, replaced, inserted or/and added on the basis of the amino acid sequence shown in SEQ ID NO.1 A conservative variant with the activity of hydrolyzing pyrazinamide obtained by conservative mutation of one to several amino acids.
需要说明的是,本发明所提供的吡嗪酰胺水解酶属于半胱氨酸水解酶超家族中的一员。SEQ ID NO.1所示的氨基酸序列由191个氨基酸残基组成。It should be noted that the pyrazinamide hydrolase provided by the present invention is a member of the cysteine hydrolase superfamily. The amino acid sequence shown in SEQ ID NO.1 consists of 191 amino acid residues.
为了使上述蛋白质便于纯化,可在上述的氨基酸序列组成的蛋白质的氨基末端或羧基末端连接上如表1所示的标签。In order to facilitate the purification of the above-mentioned protein, the tags shown in Table 1 can be attached to the amino-terminus or carboxy-terminus of the protein composed of the above-mentioned amino acid sequence.
表1标签的序列Table 1 Sequence of tags
上述吡嗪酰胺水解酶蛋白质可以人工合成,也可先合成其编码基因,再进行生物表达得到。上述中的蛋白质的编码基因还可通过将SEQ ID NO.1所示的氨基酸序列中,缺失、置换、插入或添加一个至几个并保持原有酶活性,或者连上表1所示的标签的编码序列得到。The above-mentioned pyrazinamide hydrolase protein can be synthesized artificially, or its coding gene can be firstly synthesized and then biologically expressed. The protein-encoding gene mentioned above can also be deleted, substituted, inserted or added one to several in the amino acid sequence shown in SEQ ID NO. The coding sequence was obtained.
本发明还提供了一种吡嗪酰胺水解酶的编码基因,该基因编码:The present invention also provides a gene encoding pyrazinamide hydrolase, which encodes:
(a)具有SEQ ID NO.1所示的氨基酸序列的蛋白质;或(a) a protein having the amino acid sequence shown in SEQ ID NO.1; or
(b)具有衍生自缺失、置换、插入或添加一个至几个氨基酸的SEQ ID NO.1所示的氨基酸序列并具有吡嗪酰胺水解酶活性的蛋白质。(b) A protein having the amino acid sequence shown in SEQ ID NO. 1 derived from deletion, substitution, insertion or addition of one to several amino acids and having pyrazinamide hydrolase activity.
进一步地,所述吡嗪酰胺水解酶的编码基因为(i)、(ii)或(iii)的DNA分子:Further, the coding gene of the pyrazinamide hydrolase is the DNA molecule of (i), (ii) or (iii):
(i)具有SEQ ID NO.2所示的核苷酸序列的DNA分子;(i) DNA molecule with the nucleotide sequence shown in SEQ ID NO.2;
(ii)在严格条件下与(i)所述的核苷酸序列杂交且编码具有水解吡嗪酰胺活性的蛋白质的DNA分子;(ii) a DNA molecule that hybridizes to the nucleotide sequence described in (i) under stringent conditions and encodes a protein with pyrazinamide hydrolysis activity;
(iii)与(i)或(ii)所述DNA分子的核苷酸序列具有90%以上同源性的核苷酸序列的DNA分子。(iii) A DNA molecule having a nucleotide sequence that is 90% or more homologous to the nucleotide sequence of the DNA molecule described in (i) or (ii).
进一步,所述严格条件为钠离子浓度为50-300mM的溶液中,反应温度为50-68℃。Further, the stringent conditions are that the reaction temperature is 50-68° C. in a solution with a sodium ion concentration of 50-300 mM.
例如:在进行分子杂交的过程中,可以为在6×SSC、质量分数为0.5%的SDS的溶液中,在65℃下杂交,然后用2×SSC,质量分数为0.1%的SDS和1×SSC、质量分数为0.1%的SDS各洗膜一次。其中SDS的中文名称为十二烷基硫酸钠,1×SSC包括0.15mol/L NaCl和0.015mol/L柠檬酸;SDS以及不同浓度倍数的SSC均为本领域的常用试剂。For example: in the process of molecular hybridization, it can be hybridized at 65°C in a solution of 6×SSC and 0.5% SDS by mass fraction, and then use 2×SSC, 0.1% SDS by mass fraction and 1× The membrane was washed once with SSC and 0.1% SDS respectively. The Chinese name of SDS is sodium dodecyl sulfate, and 1×SSC includes 0.15mol/L NaCl and 0.015mol/L citric acid; SDS and SSC with different concentration multiples are commonly used reagents in this field.
含有上述任一所述编码基因的重组载体、表达盒、转基因细胞系或重组菌也属于本发明的保护范围。Recombinant vectors, expression cassettes, transgenic cell lines or recombinant bacteria containing any of the above-mentioned coding genes also belong to the protection scope of the present invention.
本发明提供一种重组载体,包括上述的吡嗪酰胺水解酶的编码基因。所述重组载体为将上述编码基因插入出发载体(例如:pET28a)的多克隆位点得到的重组表达载体。可用现有的表达载体构建含有所述基因的重组表达载体。使用所述基因构建重组表达载体时,在其转录起始核苷酸前可加上任何一种增强型启动子或组成型启动子,它们可单独使用或与其它的启动子结合使用;此外,使用本发明的基因构建重组表达载体时,还可使用增强子,包括翻译增强子或转录增强子,这些增强子区域可以是ATG起始密码子或邻接区域起始密码子等,但必需与编码序列的阅读框相同,以保证整个序列的正确翻译。所述翻译控制信号和起始密码子的来源是广泛的,可以是天然的,也可以是合成的。翻译起始区域可以来自转录起始区域或结构基因。The present invention provides a recombinant vector, including the gene encoding the above-mentioned pyrazinamide hydrolase. The recombinant vector is a recombinant expression vector obtained by inserting the above coding gene into the multiple cloning site of the departure vector (for example: pET28a). An existing expression vector can be used to construct a recombinant expression vector containing the gene. When using the gene to construct a recombinant expression vector, any enhanced promoter or constitutive promoter can be added before its transcription initiation nucleotide, and they can be used alone or in combination with other promoters; in addition, When using the gene of the present invention to construct a recombinant expression vector, enhancers can also be used, including translation enhancers or transcription enhancers, and these enhancer regions can be ATG start codons or adjacent region start codons, etc., but must be consistent with the coding The reading frames of the sequences are identical to ensure correct translation of the entire sequence. The sources of the translation control signals and initiation codons are extensive and can be natural or synthetic. The translation initiation region can be from a transcription initiation region or a structural gene.
本发明还提供一种转化体,包含上述的重组载体。转化体可以为重组菌,例如,将上述任一所述编码基因插入出发载体(例如:pET28a载体)的多克隆位点得到的重组表达载体转化至大肠杆菌BL21(DE3),得到重组菌。The present invention also provides a transformant comprising the above-mentioned recombinant vector. The transformant can be a recombinant bacterium. For example, the recombinant expression vector obtained by inserting any of the above-mentioned coding genes into the multiple cloning site of the starting vector (for example: pET28a vector) is transformed into Escherichia coli BL21 (DE3) to obtain a recombinant bacterium.
本发明还提供一种引物对,用于扩增上述的吡嗪酰胺水解酶的编码基因全长及其任意片段。例如:引物对的序列如SEQ ID NO.3和SEQ ID NO.4所示。The present invention also provides a pair of primers for amplifying the full length of the gene encoding pyrazinamide hydrolase and any fragment thereof. For example: the sequences of the primer pair are shown in SEQ ID NO.3 and SEQ ID NO.4.
上述所述蛋白质、上述所述编码基因、上述所述重组表达载体、所述表达盒、转基因细胞系或重组菌中任一种在降解吡嗪酰胺和烟酰胺中的应用也属于本发明的保护范围。The application of any of the above-mentioned proteins, the above-mentioned coding genes, the above-mentioned recombinant expression vectors, the above-mentioned expression cassettes, transgenic cell lines or recombinant bacteria in the degradation of pyrazinamide and nicotinamide also belongs to the protection of the present invention scope.
另外,本发明还可以将吡嗪酰胺与吡嗪酰胺水解酶联合用于治疗结核病,特别是对于已产生吡嗪酰胺耐药性的患结核病的人群。因此,本发明还提供一种治疗结核病的药物组合物,该药物组合物包含上述的吡嗪酰胺水解酶。进一步优选地,该药物组合物除含有上述的吡嗪酰胺水解酶外,还包含吡嗪酰胺。In addition, the present invention can also combine pyrazinamide and pyrazinamide hydrolase to treat tuberculosis, especially for tuberculosis patients who have developed resistance to pyrazinamide. Therefore, the present invention also provides a pharmaceutical composition for treating tuberculosis, which comprises the above-mentioned pyrazinamide hydrolase. Further preferably, the pharmaceutical composition also contains pyrazinamide in addition to the above-mentioned pyrazinamide hydrolase.
一种上述的吡嗪酰胺水解酶在水解酰胺键中的应用。例如:用于水解吡嗪酰胺,烟酰胺等。在具体应用的过程中,可以采用下面的方法:以吡嗪酰胺,烟酰胺为底物,在中性pH8.5条件,利用吡嗪酰胺水解酶对吡嗪酰胺,烟酰胺进行酶解。所述的降解条件包括:反应体系的温度35-50℃,优选为45℃,反应体系的pH值为7.5-9.0,优选为8.5。A use of the above-mentioned pyrazinamide hydrolase in hydrolyzing amide bonds. For example: for the hydrolysis of pyrazinamide, nicotinamide, etc. In the process of specific application, the following method can be adopted: pyrazinamide and nicotinamide are used as substrates, and pyrazinamide and nicotinamide are enzymatically hydrolyzed by pyrazinamide hydrolase under the condition of neutral pH 8.5. The degradation conditions include: the temperature of the reaction system is 35-50°C, preferably 45°C, and the pH of the reaction system is 7.5-9.0, preferably 8.5.
本发明还提供一种生产吡嗪酰胺水解酶的方法,该方法包括培养上述述的转化体并由培养产物中收集吡嗪酰胺水解酶。收集的吡嗪酰胺水解酶可以进一步进行纯化。The present invention also provides a method for producing pyrazinamide hydrolase, the method comprising culturing the above-mentioned transformant and collecting the pyrazinamide hydrolase from the culture product. The collected pyrazinamide hydrolase can be further purified.
本发明的有益效果是:The beneficial effects of the present invention are:
本发明所述的蛋白具有水解吡嗪酰胺的活性,属于一种酰胺水解酶。并且该蛋白与其他已表征的吡嗪酰胺水解酶的氨基酸序列相比,相似性不大于65%,属于半胱氨酸水解酶超家族中一员。本发明所述吡嗪酰胺水解酶最适天然底物为烟酰胺,且具有在中性及偏碱性pH条件下活性高的特性。本发明对吡嗪酰胺(PZA)也有很好的酶活,实验表明:本发明所述吡嗪酰胺水解酶,以PZA为底物,在45℃、pH为8.5的条件下具有最高的酶活性,为17.20U/mg蛋白,一个酶活单位为每分钟生成1μmol产物所需的酶量;该酶在35-50℃温度范围内,酶活均较高;在pH 6.5至pH 10.0的pH值范围内,酶活均较高。该酶在pH7.5-10.0的条件下保持12h,依然有80%以上的酶活性,具有很好的pH耐受性。The protein of the invention has the activity of hydrolyzing pyrazinamide and belongs to amidohydrolase. And compared with the amino acid sequence of other characterized pyrazinamide hydrolase, the similarity of the protein is not more than 65%, and it belongs to a member of cysteine hydrolase superfamily. The optimum natural substrate of the pyrazinamide hydrolase in the present invention is nicotinamide, and has the characteristic of high activity under neutral and partial alkaline pH conditions. The present invention also has good enzymatic activity on pyrazinamide (PZA), and experiments show that the pyrazinamide hydrolase of the present invention uses PZA as a substrate and has the highest enzymatic activity at 45°C and pH 8.5 , is 17.20U/mg protein, and one unit of enzyme activity is the amount of enzyme required to generate 1 μmol of product per minute; the enzyme has high enzyme activity in the temperature range of 35-50°C; at pH 6.5 to pH 10.0 Within the range, the enzyme activity was high. The enzyme is maintained at pH 7.5-10.0 for 12 hours, still has more than 80% of the enzyme activity, and has good pH tolerance.
附图说明Description of drawings
图1为PncA-Pse蛋白纯化前后的SDS-PAGE电泳图。Figure 1 is the SDS-PAGE electrophoresis before and after purification of PncA-Pse protein.
图2为吡嗪酰胺水解酶的活性随温度的变化的结果。Figure 2 is the result of the activity of pyrazinamide hydrolase as a function of temperature.
图3为吡嗪酰胺水解酶的活性随pH的变化的结果。Fig. 3 is the result of the change of the activity of pyrazinamide hydrolase with pH.
具体实施方式Detailed ways
以下结合附图对本发明的原理和特征进行描述,所举实例只用于解释本发明,并非用于限定本发明的范围。The principles and features of the present invention are described below in conjunction with the accompanying drawings, and the examples given are only used to explain the present invention, and are not intended to limit the scope of the present invention.
下述实施例中所使用的实验方法如无特殊说明,均为常规方法。The experimental methods used in the following examples are conventional methods unless otherwise specified.
下述实施例中所用的材料、试剂等,如无特殊说明,均可从商业途径得到。The materials and reagents used in the following examples can be obtained from commercial sources unless otherwise specified.
实施例1、蛋白及基因的制备与功能Embodiment 1, preparation and function of protein and gene
1、Pseudonocardia carboxydivorans总DNA的提取:1. Extraction of total DNA of Pseudonocardia carboxydivorans:
采用Pseudonocardia carboxydivorans取其新鲜湿菌体20克,悬于10毫升50mMTris缓冲液中(pH8.0),加入少量溶菌酶和8毫升0.25mM EDTA(pH8.0),混匀后37℃放置20min;之后加入2毫升质量分数为10%的SDS,55℃放置5min,分别用等体积酚、氯仿各抽提一次;取最后一次的上清溶液,加入2倍体积无水乙醇,回收DNA,分别用70%无水乙醇洗2次;沉淀真空干燥,溶于0.5毫升TE缓冲液(pH8.0,10mM Tris,1mM EDTA)。Take 20 grams of fresh wet cells from Pseudonocardia carboxydivorans, suspend in 10 ml of 50 mM Tris buffer (pH 8.0), add a small amount of lysozyme and 8 ml of 0.25 mM EDTA (pH 8.0), mix and place at 37 ° C for 20 min; Then add 2 ml of SDS with a mass fraction of 10%, place at 55°C for 5 min, and extract once with equal volumes of phenol and chloroform respectively; take the last supernatant solution, add 2 times the volume of absolute ethanol, recover DNA, and use Washed twice with 70% absolute ethanol; the precipitate was vacuum-dried and dissolved in 0.5 ml TE buffer (pH 8.0, 10 mM Tris, 1 mM EDTA).
2、合成SEQ ID NO.2所示的核苷酸序列2. Synthesize the nucleotide sequence shown in SEQ ID NO.2
根据SEQ ID NO.2所示的核苷酸序列设计引物对如下:According to the nucleotide sequence shown in SEQ ID NO.2, the primer pair is designed as follows:
正向引物:5′-CGCGGATCCATGGCACGAGCGTTGATCGTCGTC-3′,如SEQ ID NO.3所示;Forward primer: 5′-CGC GGATCC ATGGCACGAGCGTTGATCGTCGTC-3′, as shown in SEQ ID NO.3;
反向引物:5′-GGGTTCGAATCAGGCGGTGCGGAGCTCCACGC-3′,如SEQ ID NO.4所示;Reverse primer: 5'-GGG TTCGAA TCAGGCGGTGCGGAGCTCCACGC-3', as shown in SEQ ID NO.4;
正向引物的下划线部分为BamHI的酶切位点,反向引物的下划线部分为HindШ酶切位点。The underlined part of the forward primer is the restriction site of BamHI, and the underlined part of the reverse primer is the restriction site of HindШ.
以Pseudonocardia carboxydivorans总DNA为模板,用设计的引物对进行PCR扩增。Using the total DNA of Pseudonocardia carboxydivorans as a template, PCR amplification was performed with the designed primer pairs.
PCR反应体系:PCR reaction system:
PCR反应条件:95℃预变性5min,然后95℃变性30s,55℃退火30s,72℃延伸30s,30个循环,最后72℃延伸10min。PCR reaction conditions: pre-denaturation at 95°C for 5 minutes, then denaturation at 95°C for 30s, annealing at 55°C for 30s, extension at 72°C for 30s, 30 cycles, and finally extension at 72°C for 10 minutes.
PCR产物用质量分数为0.7%的琼脂糖凝胶电泳检测产量和特异性,并用DNA纯化试剂盒(超薄离心柱型,天根公司生产)纯化。将纯化的PCR产物进行测序,结果表明PCR产物的序列包括SEQ ID NO.2所示1-576位,并将其命名为PncA-Pse DNA片段。The yield and specificity of the PCR product were detected by agarose gel electrophoresis with a mass fraction of 0.7%, and purified with a DNA purification kit (ultra-thin spin column type, produced by Tiangen Company). The purified PCR product was sequenced, and the result showed that the sequence of the PCR product included positions 1-576 shown in SEQ ID NO.2, and it was named as PncA-Pse DNA fragment.
3、重组表达载体的构建3. Construction of recombinant expression vector
1)将上述测序正确的PCR产物或人工合成的片段用BamHI和HindШ双酶切,琼脂糖电泳回收酶切产物。1) Digest the above-mentioned PCR products or artificially synthesized fragments with correct sequencing with BamHI and HindШ, and recover the digested products by agarose electrophoresis.
2)将质粒pET28a(Cat.N0 69864-3,Novogen)用BamHI和HindШ双酶切,琼脂糖电泳回收酶切产物。2) Plasmid pET28a (Cat.N0 69864-3, Novogen) was double-digested with BamHI and HindШ, and the digested product was recovered by agarose electrophoresis.
3)将步骤1)的酶切产物和步骤2)的酶切产物进行连接,连接产物电击转化大肠杆菌DH5α后涂布于含有50μg/mL卡那霉素的LB平板,37℃过夜培养,将得到的转化子用上述的正向引物和反向引物进行菌落PCR,筛选到含有PncA-Pse基因的重组菌,提取重组菌的质粒,进行测序验证,结果表明,在pET28a的BamHI和HindШ酶切位点之间插入了PncA-Pse片段,该片段包括SEQ ID NO.2的自5′端起第1至576位的核苷酸,插入方向正确,将该重组质粒命名为(pET28a-PncA-Pse)。3) Ligate the digested product of step 1) and the digested product of step 2), transform the ligated product into Escherichia coli DH5α by electroporation, spread it on an LB plate containing 50 μg/mL kanamycin, and culture it overnight at 37°C. The obtained transformant was subjected to colony PCR with the above-mentioned forward primer and reverse primer, and the recombinant bacteria containing the PncA-Pse gene were screened, the plasmid of the recombinant bacteria was extracted, and the sequencing verification was carried out. A PncA-Pse fragment was inserted between the sites, and the fragment included nucleotides 1 to 576 from the 5' end of SEQ ID NO.2, and the insertion direction was correct. The recombinant plasmid was named (pET28a-PncA- Pse).
4、工程菌的制备4. Preparation of engineering bacteria
将质粒pET28a-PncA-Pse电击转化大肠杆菌Transetta(DE3)(Cat.N0CD801,全式金公司)后涂布于含有50μg/mL卡那霉素的LB平板,37℃过夜培养,得到含有pET28a-PncA-Pse质粒的工程菌,记作Transetta/pET28a-PncA-Pse。The plasmid pET28a-PncA-Pse was transformed into Escherichia coli Transetta (DE3) (Cat.NOCD801, Quanshijin Company) by electroporation, and spread on an LB plate containing 50 μg/mL kanamycin, and cultured overnight at 37°C to obtain pET28a- The engineering strain of PncA-Pse plasmid is recorded as Transetta/pET28a-PncA-Pse.
用pET28a代替pET28a-PncA-Pse,转化大肠杆菌Transetta(DE3),步骤同上,得到含有pET28a的重组菌,作为对照菌。将转入pET28a的阳性重组菌记作Transetta/pET28a。Replace pET28a-PncA-Pse with pET28a, transform Escherichia coli Transetta (DE3), and use the same procedure as above to obtain a recombinant bacterium containing pET28a as a control bacterium. The positive recombinant bacteria transformed into pET28a were recorded as Transetta/pET28a.
5、吡嗪酰胺水解酶的制备和纯化5. Preparation and purification of pyrazinamide hydrolase
His60Ni Superflow resin纯化柱购自TaKaRa公司,产品目录号为635660。His60Ni Superflow resin purification column was purchased from TaKaRa Company, the product catalog number is 635660.
GE HiTrap Desalting纯化柱购自GE Healthcare公司,产品目录号分别为17-1408-01。GE HiTrap Desalting purification columns were purchased from GE Healthcare, and the product catalog numbers were 17-1408-01.
将上述步骤4制备的Transetta/pET28a-PncA-Pse阳性重组菌培养于含有50μg/mL卡那霉素的LB培养基中,37℃培养3h;OD600=0.7时,加入IPTG至其在LB培养基中的终浓度0.2mM,转至18℃继续培养16h。Culture the Transetta/pET28a-PncA-Pse-positive recombinant bacteria prepared in step 4 above in LB medium containing 50 μg/mL kanamycin, and culture at 37°C for 3 hours; when OD 600 =0.7, add IPTG until it is cultured in LB The final concentration in the medium was 0.2mM, and the culture was continued at 18°C for 16h.
在3800rpm、15min条件下离心收集菌体,悬浮于PBS溶液(50mM Tris-HCl,pH8.0,0.5M NaCl,5mM咪唑)中,于冰浴中超声破碎(60w,10min;超声1s,停止2s),之后12000rpm离心10min除去细胞碎片,取上清液;将上清液过His60Ni Superflow resin纯化柱,用5mL超纯水冲洗,再用10mL溶液A(50mM Tris-HCl,pH8.0,0.5M NaCl,25mM咪唑)漂洗,最后用5mL溶液B(50mM Tris-HCl,pH8.0,0.5M NaCl,500mM咪唑)洗脱,收集洗脱液。然后将洗脱液用脱盐柱GE HiTrap Desalting进行脱盐处理,用溶液C(50mM Tris-HCl,pH 8.5)进行洗脱,得到PncA-Pse纯酶液。Collect the cells by centrifugation at 3800rpm for 15min, suspend in PBS solution (50mM Tris-HCl, pH8.0, 0.5M NaCl, 5mM imidazole), and sonicate in an ice bath (60w, 10min; sonicate for 1s, stop for 2s ), then centrifuge at 12000rpm for 10min to remove cell debris, and take the supernatant; pass the supernatant through a His60Ni Superflow resin purification column, rinse with 5mL ultrapure water, and then wash with 10mL solution A (50mM Tris-HCl, pH8.0, 0.5M NaCl, 25 mM imidazole), rinsed with 5 mL of solution B (50 mM Tris-HCl, pH 8.0, 0.5 M NaCl, 500 mM imidazole), and collected the eluate. Then the eluate was desalted with a desalting column GE HiTrap Desalting, and eluted with solution C (50 mM Tris-HCl, pH 8.5) to obtain a pure enzyme solution of PncA-Pse.
将步骤4制备的对照菌采用相同的步骤进行培养和纯化,得到的溶液作为对照酶液。The control bacteria prepared in step 4 were cultivated and purified in the same steps, and the obtained solution was used as the control enzyme solution.
SDS-PAGE电泳显示纯化的PncA-Pse蛋白的分子量约为23kDa,符合理论推断的23kDa。结果如图1所示,图1中,泳道M表示蛋白分子量标准(100,75,50,37,25kDa);泳道1表示大肠杆菌Transetta/pET28a-PncA-Pse破菌后的上清液;泳道2表示Ni-NTA柱纯化后的PncA-Pse蛋白;泳道3表示GE Desalting脱盐柱纯化后的PncA-Pse蛋白。可以看出已经获得了PncA-Pse蛋白。同时进行了对照组的实验,但对照菌并没有得到目的蛋白。SDS-PAGE electrophoresis showed that the molecular weight of the purified PncA-Pse protein was about 23kDa, which was in line with the theoretical deduction of 23kDa. The results are as shown in Figure 1, and in Figure 1, swimming lane M represents protein molecular weight standard (100,75,50,37,25kDa); Swimming lane 1 represents the supernatant after E. 2 represents PncA-Pse protein purified by Ni-NTA column; lane 3 represents PncA-Pse protein purified by GE Desalting column. It can be seen that the PncA-Pse protein has been obtained. At the same time, the experiment of the control group was carried out, but the control bacteria did not obtain the target protein.
实施例2、以吡嗪酰胺为底物验证蛋白功能Example 2. Using pyrazinamide as a substrate to verify protein function
酶活单位定义为1min内催化产生1μmol吡嗪酸所需的酶量。The enzyme activity unit is defined as the amount of enzyme required to catalyze the production of 1 μmol of pyrazinoic acid within 1 min.
(一)最适温度(1) Optimum temperature
用pH8.5的50mM Tris-HCl缓冲液稀释实施例1的步骤5中的PncA-Pse纯酶液,用稀释后的酶液进行酶活测定。将稀释后的酶液记作稀释酶液。The PncA-Pse pure enzyme solution in Step 5 of Example 1 was diluted with 50 mM Tris-HCl buffer solution of pH 8.5, and the enzyme activity was measured with the diluted enzyme solution. The diluted enzyme solution was recorded as the diluted enzyme solution.
溶液A组成:由50mM,pH8.5的50mM Tris-HCl缓冲液和吡嗪酰胺溶液组成;吡嗪酰胺在溶液A中的浓度为100μM。Composition of solution A: composed of 50 mM Tris-HCl buffer solution with pH 8.5 and pyrazinamide solution; the concentration of pyrazinamide in solution A is 100 μM.
实验组:活性测定反应体系为0.5mL,由0.475mL溶液A和0.025mL稀释酶液;反应体系的pH值为8.5;反应体系在特定温度范围(25-60℃)内温育10min后,加入0.05mL10%三氯乙酸终止反应,过0.22μm的有机滤膜,然后上样20μL于HPLC,检测产物吡嗪酸的量。液相条件:Experimental group: The activity measurement reaction system is 0.5mL, dilute the enzyme solution from 0.475mL solution A and 0.025mL; the pH value of the reaction system is 8.5; 0.05mL of 10% trichloroacetic acid was used to terminate the reaction, passed through a 0.22μm organic filter, and then 20μL of the sample was loaded on HPLC to detect the amount of pyrazinic acid. Liquid phase conditions:
C18色谱柱;C18 chromatographic column;
检测波长:268nm柱温:30℃Detection wavelength: 268nm Column temperature: 30°C
流速:0.5mL/minFlow rate: 0.5mL/min
流动相:甲醇:水(10:90)Mobile phase: methanol: water (10:90)
结果如图2A所示。图2A表明,吡嗪酰胺水解酶具有酰胺酶活性。在45℃条件下,吡嗪酰胺水解酶具有最高的酶活性;将此温度下的酶活反应体系吡嗪酸产物的峰面积作为相对活性100%,其他温度下酶活反应体系吡嗪酸产物的峰面积与此最高酶活体系吡嗪酸产物的峰面积的比值作为相对活性。在30-50℃条件下均具有50%以上的活性。The results are shown in Figure 2A. Figure 2A shows that pyrazinamide hydrolase has amidase activity. At 45°C, pyrazinamide hydrolase has the highest enzymatic activity; the peak area of the pyrazinoic acid product in the enzyme activity reaction system at this temperature is regarded as 100% of the relative activity, and the pyrazinoic acid product in the enzyme activity reaction system at other temperatures The ratio of the peak area of the highest enzyme activity system to the peak area of the pyrazinoic acid product was used as the relative activity. All have more than 50% activity at 30-50°C.
对照组:以对照菌Transetta/pET28a获得的蛋白(记作对照酶液)进行上述实验,结果不管在哪个温度条件下,对照酶液都没有水解吡嗪酰胺的活性。Control group: the above experiment was carried out with the protein obtained from the control bacteria Transetta/pET28a (referred to as the control enzyme solution). As a result, the control enzyme solution had no activity of hydrolyzing pyrazinamide no matter under which temperature conditions.
实验设3次重复,结果一致。The experiment was repeated 3 times and the results were consistent.
(二)最适pH(2) Optimum pH
如下各组中的稀释酶液均是用各组中的缓冲液稀释实施例1的步骤5中的PncA-Pse纯酶液得到的。The diluted enzyme solutions in the following groups were all obtained by diluting the PncA-Pse pure enzyme solution in Step 5 of Example 1 with the buffer solution in each group.
实验组:活性测定反应体系为0.5mL,分别由0.475mL溶液B(B1、B2、B3、B4、B5、B6、B7、B8或B9)和0.025mL稀释酶液组成;Experimental group: The activity assay reaction system is 0.5mL, which is composed of 0.475mL solution B (B1, B2, B3, B4, B5, B6, B7, B8 or B9) and 0.025mL diluted enzyme solution;
溶液B1的组成:50NaH2PO4-Na2HPO4缓冲液和吡嗪酰胺(PZA);吡嗪酰胺在溶液B1中的浓度为100μM;溶液B1的pH值为5.5。The composition of solution B1: 50NaH 2 PO 4 -Na 2 HPO 4 buffer solution and pyrazinamide (PZA); the concentration of pyrazinamide in solution B1 is 100 μM; the pH of solution B1 is 5.5.
溶液B2的组成:与溶液B1的组成相同,溶液B2的pH值为6.0。Composition of solution B2: the same composition as solution B1, the pH value of solution B2 is 6.0.
溶液B3的组成:与溶液B1的组成相同,溶液B3的pH值为6.5。Composition of solution B3: same composition as solution B1, pH of solution B3 is 6.5.
溶液B4的组成:与溶液B1的组成相同,溶液B4的pH值为7.0。Composition of solution B4: the same composition as solution B1, the pH value of solution B4 is 7.0.
溶液B5的组成:与溶液B1的组成相同,溶液B5的pH值为7.5。Composition of solution B5: the same composition as solution B1, and the pH value of solution B5 is 7.5.
溶液B6的组成:与溶液B1的组成相同,不同的是将50mM NaH2PO4-Na2HPO4缓冲液替换为50mM Tris-HCl缓冲液。溶液B6的pH值为7.5。Composition of solution B6: the same composition as solution B1, except that 50 mM NaH 2 PO 4 -Na 2 HPO 4 buffer was replaced by 50 mM Tris-HCl buffer. Solution B6 has a pH of 7.5.
溶液B7的组成:与溶液B1的组成相同,不同的是将50mM NaH2PO4-Na2HPO4缓冲液替换为50mM Tris-HCl缓冲液。溶液B7的pH值为8.0。Composition of solution B7: the same composition as solution B1, except that 50 mM NaH 2 PO 4 —Na 2 HPO 4 buffer was replaced by 50 mM Tris-HCl buffer. Solution B7 had a pH of 8.0.
溶液B8的组成:与溶液B1的组成相同,不同的是将50mM NaH2PO4-Na2HPO4缓冲液替换为50mM Tris-HCl缓冲液。溶液B8的pH值为8.5。Composition of solution B8: the same composition as solution B1, except that 50 mM NaH 2 PO 4 —Na 2 HPO 4 buffer was replaced by 50 mM Tris-HCl buffer. Solution B8 had a pH of 8.5.
溶液B9的组成:与溶液B1的组成相同,不同的是将50mM NaH2PO4-Na2HPO4缓冲液替换为50mM Tris-HCl缓冲液。溶液B9的pH值为9.0。Composition of solution B9: the same composition as solution B1, except that 50 mM NaH 2 PO 4 -Na 2 HPO 4 buffer was replaced by 50 mM Tris-HCl buffer. Solution B9 had a pH of 9.0.
溶液B10的组成:与溶液B1的组成相同,不同的是将50mM NaH2PO4-Na2HPO4缓冲液替换为50mM glycine-NaOH缓冲液。溶液B10的pH值为9.0。Composition of solution B10: the same composition as solution B1, except that 50 mM NaH 2 PO 4 -Na 2 HPO 4 buffer was replaced by 50 mM glycine-NaOH buffer. Solution B10 had a pH of 9.0.
溶液B11的组成:与溶液B1的组成相同,不同的是将50mM NaH2PO4-Na2HPO4缓冲液替换为50mM glycine-NaOH缓冲液。与溶液B11的pH值为9.5。Composition of solution B11: the same composition as solution B1, except that 50 mM NaH 2 PO 4 -Na 2 HPO 4 buffer was replaced by 50 mM glycine-NaOH buffer. with solution B11 having a pH of 9.5.
溶液B12的组成:与溶液B1的组成相同,不同的是将50mM NaH2PO4-Na2HPO4缓冲液替换为50mM glycine-NaOH缓冲液。溶液B12的pH值为10.0。Composition of solution B12: the same composition as solution B1, except that 50 mM NaH 2 PO 4 -Na 2 HPO 4 buffer was replaced by 50 mM glycine-NaOH buffer. Solution B12 had a pH of 10.0.
溶液B13的组成:与溶液B1的组成相同,不同的是将50mM NaH2PO4-Na2HPO4缓冲液替换为50mM glycine-NaOH缓冲液。溶液B13的pH值为10.5。Composition of solution B13: the same composition as solution B1, except that 50 mM NaH 2 PO 4 -Na 2 HPO 4 buffer was replaced by 50 mM glycine-NaOH buffer. Solution B13 had a pH of 10.5.
溶液B13的组成:与溶液B1的组成相同,不同的是将50mM NaH2PO4-Na2HPO4缓冲液替换为50mM glycine-NaOH缓冲液。溶液B13的pH值为11.0。Composition of solution B13: the same composition as solution B1, except that 50 mM NaH 2 PO 4 -Na 2 HPO 4 buffer was replaced by 50 mM glycine-NaOH buffer. Solution B13 had a pH of 11.0.
将反应体系在45℃,温育10min后,加入0.05mL10%三氯乙酸终止反应,过0.22μm的有机滤膜,然后上样20μL于HPLC,在268nm处检测产物吡嗪酸的量。After incubating the reaction system at 45°C for 10 min, 0.05 mL of 10% trichloroacetic acid was added to terminate the reaction, passed through a 0.22 μm organic filter, and then 20 μL of the sample was loaded on HPLC, and the amount of the product pyrazinic acid was detected at 268 nm.
实验设三次重复。The experiment was repeated three times.
结果如图3A所示。The results are shown in Figure 3A.
吡嗪酰胺水解酶在pH为6.5至10.0之间的条件下均具有不错的吡嗪酰胺水解酶的活性,即可以降解吡嗪酰胺。The pyrazinamide hydrolase has good pyrazinamide hydrolase activity under the condition of pH between 6.5 and 10.0, that is, it can degrade pyrazinamide.
表明吡嗪酰胺水解酶在pH8.5条件下具有最高酶活性。以此最高酶活反应体系吡嗪酸产物的峰面积作为相对活性100%,其他pH下酶活反应体系吡嗪酸产物的峰面积与此最高酶活体系吡嗪酸产物的峰面积的比值作为相对活性。It shows that pyrazinamide hydrolase has the highest enzyme activity at pH8.5. The peak area of the pyrazinoic acid product in this highest enzyme activity reaction system is regarded as relative activity 100%, and the ratio of the peak area of the enzyme activity reaction system pyrazinoic acid product to the peak area of this highest enzyme activity system pyrazinoic acid product under other pH is taken as relative activity.
对照组:以对照菌Transetta/pET28a获得的蛋白(记作对照酶液)进行上述实验,结果不管在哪个pH条件下,对照酶液都没有降解吡嗪酰胺的活性。Control group: the above experiment was carried out with the protein obtained from the control bacteria Transetta/pET28a (referred to as the control enzyme solution). As a result, the control enzyme solution had no activity of degrading pyrazinamide no matter under which pH conditions.
实验设3次重复,结果一致。The experiment was repeated 3 times and the results were consistent.
(三)酶热稳定性(3) Enzyme thermostability
用pH8.5的50mM Tris-HCl缓冲液稀释实施例1的步骤5中的PncA-Pse纯酶液,用稀释后的酶液以吡嗪酰胺为底物进行酶活测定。将稀释后的酶液记作稀释酶液。The PncA-Pse pure enzyme solution in Step 5 of Example 1 was diluted with 50 mM Tris-HCl buffer solution of pH 8.5, and the enzyme activity was measured with the diluted enzyme solution using pyrazinamide as a substrate. The diluted enzyme solution was recorded as the diluted enzyme solution.
将稀释酶液在37℃水浴放置孵育,每隔5分钟取样,测定酶的残余活性。结果显示,酶在37℃10min任可以保持50%残余酶活。本发明测定了PncA-Pse在37℃的热稳定性。The diluted enzyme solution was incubated in a 37°C water bath, and samples were taken every 5 minutes to determine the residual activity of the enzyme. The results showed that the enzyme could maintain 50% residual enzyme activity at 37°C for 10 minutes. The present invention measures the thermal stability of PncA-Pse at 37°C.
结果如图2B所示。The results are shown in Figure 2B.
(四)pH耐受性(4) pH tolerance
将稀释酶液分别在pH 7.0、7.5、8.0、8.5、9.0、9.5.10.0、10.5、11.0条件下放置12h后,以吡嗪酰胺为底物测定残余酶活。结果显示pH 7.5-10.0条件下仍然具有60%以上的相对酶活。说明该酶具有良好的pH耐受性。After the diluted enzyme solution was placed at pH 7.0, 7.5, 8.0, 8.5, 9.0, 9.5, 10.0, 10.5, and 11.0 for 12 hours, the remaining enzyme activity was determined using pyrazinamide as a substrate. The results show that the relative enzyme activity still has more than 60% under the condition of pH 7.5-10.0. It shows that the enzyme has good pH tolerance.
结果如图3B所示。The results are shown in Figure 3B.
(五)底物特异性(5) Substrate specificity
将稀释酶液分别在相同浓度(摩尔浓度为100μM)的不同底物条件下进行酶活测定,底物分别为吡嗪酰胺、烟酰胺、异烟酰胺、丙酰胺、异丁酰胺、苯甲酰胺。The enzyme activity of the diluted enzyme solution was determined under the conditions of different substrates at the same concentration (100 μM molar concentration), and the substrates were pyrazinamide, nicotinamide, isonicotinamide, propionamide, isobutyramide, and benzamide .
以不同酰胺底物测得酶活,仅吡嗪酰胺与烟酰胺测出酶活,其中对烟酰胺的酶活最高,为36.25U/mg,对吡嗪酰胺的酶活为17.20U/mg。因此,该吡嗪酰胺水解酶对吡嗪酰胺、烟酰胺具有很强的底物特异性,并对这两种杂环酰胺类底物具有较高的催化活性。Enzyme activity was measured with different amide substrates, only pyrazinamide and nicotinamide were tested for enzyme activity, and the enzyme activity for nicotinamide was the highest at 36.25U/mg, and the enzyme activity for pyrazinamide was 17.20U/mg. Therefore, the pyrazinamide hydrolase has strong substrate specificity for pyrazinamide and nicotinamide, and has high catalytic activity for these two heterocyclic amides substrates.
以上所述仅为本发明的较佳实施例,并不用以限制本发明,凡在本发明的精神和原则之内,所作的任何修改、等同替换、改进等,均应包含在本发明的保护范围之内。The above descriptions are only preferred embodiments of the present invention, and are not intended to limit the present invention. Any modifications, equivalent replacements, improvements, etc. made within the spirit and principles of the present invention shall be included in the protection of the present invention. within range.
SEQUENCE LISTINGSEQUENCE LISTING
<110> 湖北大学<110> Hubei University
<120> 一种吡嗪酰胺水解酶与其编码基因和应用<120> A kind of pyrazinamide hydrolase and its coding gene and application
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<170> PatentIn version 3.5<170> PatentIn version 3.5
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Pro Gly Ala Ser Phe His Pro Ala Leu Asp Val Ala Pro Ile Glu CysPro Gly Ala Ser Phe His Pro Ala Leu Asp Val Ala Pro Ile Glu Cys
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Val Leu Leu His His Cys Ala Gly Val Ala Pro Glu Thr Thr Glu ArgVal Leu Leu His His Cys Ala Gly Val Ala Pro Glu Thr Thr Glu Arg
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gcggtggccg gcggggccgc cgtggccgcc gggatcgggc cgctcgcgac cggtggccgc 120gcggtggccg gcggggccgc cgtggccgcc gggatcgggc cgctcgcgac cggtggccgc 120
gacgggcggg tctacgacca cgtcgtcgcc acccgggacg tgcacgtgga cccggggccg 180gacgggcggg tctacgacca cgtcgtcgcc acccgggacg tgcacgtgga cccggggccg 180
cacttctccg acaccccgga cttcgtcgac tcctggccgc cgcactgccg cgcggggacg 240cacttctccg acaccccgga cttcgtcgac tcctggccgc cgcactgccg cgcggggacg 240
ccgggcgcgt cgttccaccc ggcactggac gtggcgccga tcgagtgcgt cttcgacaag 300ccgggcgcgt cgttccacccc ggcactggac gtggcgccga tcgagtgcgt cttcgacaag 300
ggcgcctaca ccagcgccta ctccgggttc gagggcgcga gcgcgaacga gtcgggcgcc 360ggcgcctaca ccagcgccta ctccgggttc gagggcgcga gcgcgaacga gtcgggcgcc 360
ccgctgggcg actggctcac cgagcacggg gtgaccgagg tcgacgtcgt cggcctggcg 420ccgctgggcg actggctcac cgagcacggg gtgaccgagg tcgacgtcgt cggcctggcg 420
accgaccact gcgtccgggc gaccgcgctc gacgcggccc ggctcgggct ggcgacgacg 480accgaccact gcgtccgggc gaccgcgctc gacgcggccc ggctcgggct ggcgacgacg 480
gtgctgctgc accactgcgc cggggtggca ccggagacga cggagcgggc gctcgccgcg 540gtgctgctgc accactgcgc cggggtggca ccggagacga cggagcgggc gctcgccgcg 540
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