Disclosure of Invention
In the invention, a novel label-free polypeptide molecular probe is designed by fully utilizing the characteristic that the stability and the quantum yield of the double-arsenic dye-four-cysteine label compound are extremely dependent on the space conformation of the four-cysteine label, and a simple and sensitive method for measuring the enzyme activity is further developed.
Before the present compounds, compositions, proteins, peptides, etc., and methods are described, it is to be understood that these embodiments are not limited to the particular methodology, protocols, and reagents described, as these may vary. It is also to be understood that the terminology used herein is for the purpose of describing particular embodiments only, and is not intended to limit the scope of the present embodiments or the claims.
In order to achieve the above purpose of the present invention, the following technical solutions are adopted:
a polypeptide probe selected from the group consisting of a combination of:
X1-Y1-CC;
wherein, X1Is a polypeptide with dimerization capacity;
Y1selected from the sequence of the enzyme cleavage site of the enzyme to be detected.
Wherein, X1The dimer formed by the fragmentation can form spontaneously, or can form under other helper proteins or helper conditions (e.g., X)1Some amino acid residues of the peptide segment are modified or the peptide segment is in a hydrophobic environment), preferably the dimer is formed spontaneously.
The probe contains at least three different functional regions, CC, two cysteines, which are binding sites for the diarsenic dye, for reading the activity of the enzyme to be detected. (spontaneous) dimerization between the polypeptide probes when not cleaved by the enzyme to be detected brings the two cysteine-cysteine bigements into close spatial proximity to each other, and thus can bind to the diarsenic dye to emit strong fluorescence; in contrast, enzymatic cleavage of the enzyme to be detected dissociates the cysteine-cysteine bi-mer from the polypeptide, and although the cleaved polypeptide still dimerizes, it lacks a site for anchoring a diarsenic dye, which is therefore unable to emit light. Therefore, the activity of the enzyme to be detected can be quantitatively determined by measuring the change in fluorescence before and after cleavage.
By altering Y1The sequence of the polypeptide fragment, theoretically, the probe provided by the invention can detect the activity of all enzymes with the capability of cutting the peptide fragment.
Preferably, the polypeptide probe as described above, said X1Is selected from D configuration amino acid.
Since amino acids are naturally selected to be in the L-form during the biological evolution process, enzymes in organisms cannot recognize and cleave D-form amino acids. This design prevents X1Non-specific cleavage of the segment by other proteases may also be effective in extending the half-life of the polypeptide probes provided by the present invention.
X1The amino acids in D configuration and L configuration in the segment can be arranged in a crossed way, for example, a D configuration and an L configuration are alternatively connected, and the functions can also be realized; most preferably, X1The amino acid sequences of (a) are all selected from the D configuration amino acids.
Preferably, the polypeptide probe as described above, said X1Is a leucine zipper, or a polypeptide comprising a leucine zipper structure.
A leucine zipper comprises multiple leucine residues, usually occurring once every seven amino acid residues, forming an amphipathic α -helix, with a hydrophobic region on only one side, which provides a dimerizing domain, allowing the motif to pull like a "zipper".
In addition, according to the teachings of the present invention, X1The fragment polypeptides can be designed based on the protein segments responsible for dimerization among protein dimers commonly found in organisms, such as receptor tyrosine kinases, certain nuclear receptor proteins, 14-3-3 proteins, kinesins, Factor XI, Factor XIII, Toll-like receptors, fibrinogen, β gamma subunit dimers of G protein, and the like, which are easy for those skilled in the art.
Preferably, X1The segment polypeptide can be selected from the following amino acid sequences:
QLEDKVEELLSKNYHLENEVARLKKLVG;
KLEALEGKLEAEGKGKLEAUGICLEALE;
GEIAALKQEIAALKKENAALKWEIAALKQGYY;
ASIARLEEKVKTLKAQNYELASTANMLREQVAQLGAP;
ASAAELEERVKTLKAEIYELQSEANMLREQIAQLGAP;
ASAAELEERVKTLKAEIYELQSEANMLREQGAP;
ASAAELEERVKTLKAEIYELQSEGAP;
ESKVSSLESKVSSLESKVSSLESKVSSLESKVSSLESKVSS。
more preferably, the amino acid sequences are all amino acids in D configuration.
Preferably, the polypeptide probe is an N-terminal acetylated polypeptide probe;
and/or;
the C end of the polypeptide probe is subjected to amidation modification.
Modification of both ends of the polypeptide probe can play a role in increasing the stability of the probe.
Preferably, the polypeptide probe as described above, said X1And said Y1Also comprises a Linker1 and/or the Y1The connector 2 is also arranged between the CC and the shell;
preferably, the number of the amino acids of the Linker1 is 1-30, and more preferably 1-5;
preferably, the number of the amino acids of the Linker2 is 1-30, and more preferably 1-5.
The number of amino acids of Linker1 and Linker2 can be 1,2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30.
Linker1 and Linker2 can also be selected from (GGGGS) n, (GGGS) n, (GGS) n, or Gn, where n can be 1,2, 3, 4, 5, or 6.
Preferably, the polypeptide probe as described above, said Y1Is DEVD.
DEVD is the cleavage site for cysteine protease-3 (Caspase3) and cysteine protease-7 (Caspase 7).
Preferably, the polypeptide probe as described above, said X1The amino acid sequence of (a) is asaaealervkttlkaeiyelrskanmlreqiaqlgap in D configuration.
This sequence is a leucine zipper structure in the D configuration.
Preferably, the amino acid sequence of the Linker2 is G, as in the polypeptide probe described above.
A polypeptide probe for detecting the enzymatic activity of Caspase3 or Caspase7, the sequence of which is asaaelervkttlkaeiyelrkasmlreqiaqlgapDADGCC; wherein the asaaelervkktlkaeiyelrskanmlreqiqlgap is an amino acid with D configuration.
Preferably, the N-terminal and C-terminal of asaaelervktlktlkaeiyelrkaslmrelqiaqlgapDADGCC are acetylated and amidated, respectively.
A diagnostic kit comprises the polypeptide probe, the diarsenic dye, a buffer solution 1 used when a to-be-detected enzyme cuts the polypeptide probe to obtain an enzyme cutting product, and a buffer solution 2 used when the diarsenic dye marks the enzyme cutting product;
preferably, the buffer 1 contains a reducing agent for avoiding disulfide bonds, and more preferably, the reducing agent is selected from dithiothreitol and/or tris (2-carbonylethyl) phosphate;
preferably, the buffer 2 contains an eluent for avoiding the binding of the single CC fragment to the diarsenic dye, and more preferably, the eluent is selected from 2, 3-dimercapto-1-propanol and/or 1, 2-ethanedithiol.
Preferably, the double arsenic dye is selected from the group consisting of ReAsH-EDT2、FlAsH-EDT2One or more of F2FlAsH or F4 FlAsH.
Preferably, the diagnostic kit as described above, wherein when the reducing agent is selected from dithiothreitol, the concentration of the reducing agent is 0.5 to 2 mM.
Preferably, the diagnostic kit as described above, wherein when the eluent is selected from 2, 3-dimercapto-1-propanol, the concentration of the eluent is 0.03 to 0.10 mM.
Detection of Y with the polypeptide probe or the diagnostic kit1The activity of the corresponding enzyme;
preferably, the detection is performed in a cell lysate or in a somatic cell;
more preferably, the cell is any one selected from the group consisting of HeLa cell, NIH/3T3 cell, C6 cell, MCF7 cell, human HCE cell, Jurkat T cell, Huh-7 cell, DU145 cell, U-937 cell and HepG2 cell.
Use of a polypeptide probe as described above or a diagnostic kit as described above for detecting the activity of a specific enzyme in a single cell.
Use of a polypeptide probe as described above or a diagnostic kit as described above for detecting cystatin-3 and/or cystatin-7 activity.
Use of a polypeptide probe as described above or a diagnostic kit as described above for detecting apoptosis.
Preferably, the apoptosis can be naturally occurring programmed cell death, disease-induced apoptosis or environmental-induced apoptosis, such as measurement of apoptosis induced by ultraviolet radiation, hydrogen peroxide, dexamethasone, tumor necrosis factor, and the like.
Use of a polypeptide probe as described above or a diagnostic kit as described above for the preparation and/or evaluation of a medicament for the treatment of an apoptosis-related disease;
preferably, for use as described above, the apoptosis-related disease is a tumor, an autoimmune disease or a neurodegenerative disease;
more preferably, for use as described above, the tumor comprises: leukemia, lymphoma, head and neck squamous cell carcinoma, lung cancer, esophageal cancer, liver cancer, colorectal cancer, breast cancer, ovarian cancer, cervical cancer, renal cell carcinoma, and melanoma;
more preferably, the autoimmune disease comprises: systemic lupus erythematosus, autoimmune lymphoproliferative syndrome, rheumatoid arthritis, thyroiditis;
more preferably, the neurodegenerative disease includes: alzheimer's disease, Huntington's disease, Parkinson's disease, stroke, and amyotrophic lateral sclerosis.
A method of diagnosing an apoptosis-related disease, comprising:
and contacting the cell lysate or tissue lysate of the main body to be diagnosed with the polypeptide probe or the components in the diagnosis kit, and diagnosing the main body according to the signal value obtained by the reaction.
Preferably, the method for diagnosing apoptosis-related diseases as described above, wherein the signal value is a fluorescence signal value generated by the reaction of the polypeptide probe with a diarsenic dye.
Preferably, the subject is an animal, more preferably a mammal, more preferably a primate, more preferably a human, in the method for diagnosing a disease associated with apoptosis as described above.
Preferably, the method for diagnosing apoptosis-related diseases as described above, wherein the apoptosis-related diseases are tumors, autoimmune diseases or neurodegenerative diseases;
more preferably, the tumor comprises: leukemia, lymphoma, head and neck squamous cell carcinoma, lung cancer, esophageal cancer, liver cancer, colorectal cancer, breast cancer, ovarian cancer, cervical cancer, renal cell carcinoma, and melanoma;
more preferably, the autoimmune disease comprises: systemic lupus erythematosus, autoimmune lymphoproliferative syndrome, rheumatoid arthritis, thyroiditis;
more preferably, the neurodegenerative disease comprises: alzheimer's disease, Huntington's disease, Parkinson's disease, stroke, and amyotrophic lateral sclerosis.
Compared with the prior art, the invention has the beneficial effects that:
1) the polypeptide molecular probe has no any mark, has better biocompatibility with the enzyme to be detected, and can improve the cutting efficiency;
2) in the whole detection reaction process of the kit provided by the invention, separation and cleaning steps are not required, and the operation is simple and convenient;
3) the detection mode has flexibility, and the probe can be marked by double arsenic dyes with different excitation and emission wavelengths, so that the apoptosis level can be measured in various ways;
4) the polypeptide probes specifically provided by the invention for determining Caspase3 and Caspase7 are composed of amino acids, and the apoptosis condition of a single cell can be determined by transferring DNA (deoxyribonucleic acid) encoding the polypeptide probes into the cell.
Examples
1. Design of novel label-free polypeptide molecular probe
The designed polypeptide molecular probe is named as Jun-CCC, the sequence of the polypeptide molecular probe is asaaeelervkttlkaeiyelrskanmlreqiqlgapDVDGCC, and the N end and the C end of the probe are respectively acetylated and amidated to improve the stability of the probe. The probe comprises three different functional regions, wherein the asaaelervkktlkaeiyelrskmlreqiaqlgap is a dimerization functional region which is completely composed of D-type amino acids in order to prevent the polypeptide probe from being subjected to non-specific cleavage by other proteases; DEVD is a specific cleavage sequence for cysteine protease-3 and is composed of L-type amino acids; the amino acid G behind the amino acid G is linker, so as to increase the flexibility of the reaction of CC and the double arsenic dye; CC is a site that binds to a bisarsenic dye and is used to read the activity of cystatin-3. When the polypeptide probe is not cut by cysteine protease-3, the self-dimerization between the polypeptide probes can make two cysteine-cysteine bigemins close to each other in space, so that the two cysteine-cysteine bigemins can be combined with a double arsenic dye to emit stronger fluorescence; in contrast, cleavage by cysteine proteinase-3 dissociates the cysteine-cysteine bi-mer from the polypeptide, and although the cleaved polypeptide still dimerizes, it lacks a site for anchoring a bisarsenic dye, which is therefore unable to emit light. Therefore, by measuring the change in fluorescence before and after cleavage, the activity of cystatin-3 can be quantitatively measured, and the apoptosis process can be measured.
2. Performance measurement of novel probes
To show that the binding of the diarsenic dye to the probe depends on dimerization between the probes, we designed two probes Jun without dimerization ability simultaneouslyPCCC and CCC, where JunPThe sequence of CCC is asaaepeervktpkkaeiyeprskanmpreqiaqpgapdevdgcc, and the sequence of CCC is GCC, JunPCCC is a method in which all leucine residues in the dimerization domain of Jun-CCC are mutated to proline residues to lose the dimerization function, and CCC is a method in which the dimerization domain of Jun-CCC is deleted to make it impossible to dimerize. In addition, the N end and the C end of the two polypeptides are respectively subjected to acetylation modification and amidation modification. We determined Jun-CCC, JunPCCC and the binding capacity between CCC and a diarsenic dye. As shown in FIG. 1A, Jun-CCC can bind to a diarsenic dye, producing a strong fluorescent signal, in contrast to Jun which lacks dimerization capacityPCCC and CCC then only produce some background fluorescence signal, indicating that it is a dimerized probe and not a single probe that binds to the bis-arsenic dye. Furthermore, the binding between the Jun-CCC probe and the diarsenic dye was very rapid, reaching maximum fluorescence intensity in about ten minutes (FIG. 1B); furthermore, the binding between the Jun-CCC probe and the bisarsenic dye was relatively stable (equilibrium dissociation constant determined to be 3.17. + -. 0.39 micromoles per liter).
3. Quantitative determination of in vitro recombinant cysteine proteinase-3 by novel probe
To determine whether the probe Jun-CCC was cleaved by caspase-3, we added 0.1. mu.l of 1mM Jun-CCC per liter and 0.2. mu.l of caspase-3 to 10. mu.l of cleavage buffer (25mM HEPES,100mM NaCl,1mM EDTA, 10% sucrose, 0.1% CHAPS,1mM DTT, pH 7.4) and incubated at 37 ℃ for one hour. The mixture was then added to 40. mu.l of a solution containing 1. mu. mol per liter of FlAsH-EDT2In the bisarsenic dye-labeled buffer (100mM Tris · Cl,75mM NaCl,1mM EDTA,1mM DTT,0.05mM BAL, pH 7.4) and incubated at room temperature for 30 minutes in the absence of light. We measured the fluorescence levels before and after enzymatic digestion (fig. 2A). Cleavage of caspase-3 resulted in a 30-fold decrease in the fluorescence intensity of the Jun-CCC-bis-arsenic dye complex (FIG. 2B). Further, we determinedWhether the probe can specifically measure the activity of the cysteine protease-3 or not, the cleavage effect of trypsin, thrombin and ubiquitin-like protease 1 on Jun-CCC is measured in the same reaction system, and as can be seen from FIG. 2C, the trypsin, thrombin and ubiquitin-like protease 1 can not cleave Jun-CCC, so that the activity of the cysteine protease-3 can be specifically measured by the probe Jun-CCC. Further, we incubated the Jun-CCC probe with different concentrations of cystatin-3 and measured the decrease of fluorescence Δ F caused by each concentration of cystatin-3, the relationship between Δ F and cystatin-3 concentration is shown in fig. 2D, and the calculated minimum detection limit is 0.128 ng/ml, which is superior to most existing detection methods.
4. Novel probe for determination of apoptotic cells
Further, we used the probe Jun-CCC to measure staurosporine-induced apoptosis. We used RAW264.7 cells as a study model and induced apoptosis of RAW264.7 cells with 1 micromole per liter of staurosporine, while cells without any treatment were used as a control group. Apoptosis of cells was determined by immunoblotting and fluorescence based on the probe Jun-CCC. The appearance of the large subunit of cystatin-3 was clearly seen with the addition of staurosporine (FIG. 3A), indicating that cystatin-3 was successfully activated in the cell. Consistent with the immunoblotting results, the fluorescence signal was weaker in the staurosporine-treated cells than in the control group (FIG. 3B). Furthermore, the induction of apoptosis of RAW264.7 cells by staurosporine is time-dependent, and more cystatin-3 large subunit and weaker fluorescence signal appear with the increase of induction time. To further verify that the reduced fluorescence was due to cleavage of the probe Jun-CCC by activated caspase-3, we added the caspase-3 specific inhibitor Ac-DEVD-CHO to inhibit intracellular caspase-3 activity. As shown in FIGS. 3C and 3D, the addition of Ac-DEVD-CHO did not change the protein content of caspase-3, but resulted in a recovery of fluorescence, indicating that the decrease in fluorescence is due to cleavage of the probe Jun-CCC by caspase-3. Therefore, the probe Jun-CCC is effective for determining apoptosis.
Finally, it should be noted that: the above embodiments are only used to illustrate the technical solution of the present invention, and not to limit the same; while the invention has been described in detail and with reference to the foregoing embodiments, it will be understood by those skilled in the art that: the technical solutions described in the foregoing embodiments may still be modified, or some or all of the technical features may be equivalently replaced; and the modifications or the substitutions do not make the essence of the corresponding technical solutions depart from the scope of the technical solutions of the embodiments of the present invention.