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sra

Here are 2 public repositories matching this topic...

nf-core / fetchngs

Pipeline to fetch metadata and raw FastQ files from public databases

workflow pipeline nextflow download geo fastq synapse sra ena nf-core ddbj

Updated Nov 4, 2024
Nextflow

MaxGreil / sradcqc

Proof of concept of a SRA to trimmed FASTQ (including quality control) pipeline with Nextflow

docker bioinformatics quality-control pipeline nextflow fastq sra sra-toolkit bbmap

Updated Jan 17, 2022
Nextflow

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