Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
-
Updated
May 8, 2023 - R
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
marker-based purification of cell types from single-cell RNA-seq datasets
A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing
Accurate and fast cell marker gene identification with COSG
Marker gene profile estimation method used in NeuroExpresso manuscript
Processing NEON soil microbe marker gene sequence data into ASV tables.
A tool for identifying phylogenetic marker genes in Nucleocytoviricota (giant viruses) and generating concatenated alignments.
Interactive visualization of marker genes and clustering in Slide-seq and single cell RNAseq data.
MiCV is a python dash-based web-application that enables researchers to upload raw scRNA-seq data and perform filtering, analysis, and manual annotation.
Compare several feature selection methods in scRNA-seq analysis
A library for differential expression and gene set enrichment analysis based on hydra and pydantic.
The goal of LRcell is to identify specific sub-cell types that drives the changes observed in a bulk RNA-seq differential gene expression experiment. To achieve this, LRcell utilizes sets of cell marker genes acquired from single-cell RNA-sequencing (scRNA-seq) as indicators for various cell types in the tissue of interest. Next, for each cell t…
Software suite for marker gene identification and cell type integration from single cell RNA-sequencing data
Permutation testing in single cell analysis
A hybrid approach to find spatially relevant marker genes in image based spatial transcriptomics data
MICTI- Marker gene Identification for Cell Type Identity
neonMicrobe: Processing NEON soil microbe marker gene sequence data into ASV tables, duplicated from https://github.com/claraqin/neonMicrobe
Performing scRNA-Seq analysis using OpenAI API calls
Add a description, image, and links to the marker-genes topic page so that developers can more easily learn about it.
To associate your repository with the marker-genes topic, visit your repo's landing page and select "manage topics."