Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

Program for estimating dN/dS in overlapping genes (OLGs)

Pronunced /'baze/ - is a tool which allows to integrate non-ubiquitous genes in comparative genomics analyses for selection.

MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis

[CRBHits](https://github.com/kullrich/CRBHits) is a reimplementation of the Conditional Reciprocal Best Hit algorithm [crb-blast](https://github.com/cboursnell/crb-blast) in R.

EDEN: evolutionary dynamics within environments

the user interface for EDEN - Evolutionary Dynamics within Environments