Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches
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Dec 13, 2024 - R
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derfinder
Here are 16 public repositories matching this topic...
R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
count gene r human rstats bioconductor rnaseq deseq2 illumina exon junction derfinder annotation-agnostic recount
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Dec 12, 2024 - R
Generate HTML report for a set of genomic regions or DESeq2/edgeR results
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Jan 14, 2025 - R
BioC2020 workshop: Human RNA-seq data from recount2 and related packages
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Dec 10, 2024 - HTML
Public repo for the recount Bioconductor workflow that is visible at http://bioconductor.org/help/workflows/
count gene r human rstats bioconductor rnaseq deseq2 illumina exon junction derfinder annotation-agnostic recount
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Dec 10, 2024 - TeX
Supplementary code for the paper: Incomplete annotation has a disproportionate impact on our understanding of Mendelian and complex neurogenetic disorders
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Sep 4, 2021 - R
Plotting functions for derfinder results
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Dec 12, 2024 - R
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10BC0
div class="d-flex flex-justify-between flex-items-start flex-wrap gap-2 my-3">
Package for the recount workshop for BioC2017
count gene r human rstats bioconductor rnaseq deseq2 illumina exon junction derfinder annotation-agnostic recount
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Aug 23, 2019 - HTML
Optimising the Definitions of Expressed Regions
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Apr 23, 2021 - R
Example data used by the derfinder and derfinderData Bioconductor packages
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Dec 12, 2024 - R
Build and access GenomicState objects for use with derfinder tools from sources like Gencode
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Dec 12, 2024 - R
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