TMFC toolbox - a new SPM toolbox for whole-brain task-modulated functional connectivity (TMFC) analysis with user-friendly graphical interface.
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Updated
Oct 2, 2024 - MATLAB
TMFC toolbox - a new SPM toolbox for whole-brain task-modulated functional connectivity (TMFC) analysis with user-friendly graphical interface.
Python library for analysis of neuroanatomical data.
[WIP] Fast core functions for navis re-implemented in Cython.
Code base for our paper "Connectivity-Inspired Network for Context-Aware Recognition" (ECCV 2024, Human-inspired Computer Vision workshop)
A prediction-based extension of network-based statistics.
Repository for Masharipov, Knyazeva, Korotkov, Cherednichenko & Kireev: "Comparison of whole-brain task-modulated functional connectivity methods for fMRI task connectomics"
TMFC toolbox - a new SPM toolbox for whole-brain task-modulated functional connectivity (TMFC) analysis with user-friendly graphical interface.
A unified framework for skeletonization, morphological analysis, and connectivity analysis.
A performant, powerful query framework to search for network motifs
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
Tools to work with the FlyWire connectome. Fully interoperable with navis.
Supplemental source code for Nern et al. 2024: "Connectome-driven neural inventory of a complete visual system"
Zebrafish Hindbrain Connectome
Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
Supporting Files of paper titled "Dynamic Simulation of Parkinson's Disease and ALS Propagation in the Brain: A Reaction-Diffusion on Brain Networks Approach"
Create indexes of simple shapes and find all indexed elements that intersect with a query region.
Methods for estimating time-varying functional connectivity (TVFC)
Efficient meta learning of synaptic plasticity from experimental data using artificial neural network models
Simulate the C. Elegans worm brain in your browser and interact with the worm as it moves around.
LaTeX code for my PhD thesis.
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