simplified code in application_prediction.get_weighted_ligand_target_links #13
Triggered via pull request
February 18, 2025 15:56
Status
Failure
Total duration
1h 27m 25s
Artifacts
5
Annotations
51 errors and 50 warnings
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ubuntu-latest (oldrel-1)
Can't combine `..1$weight` <double[,22]> and `..3$weight` <double[,12]>.
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ubuntu-latest (oldrel-1)
cannot read from connection
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ubuntu-latest (oldrel-1)
cannot read from connection
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ubuntu-latest (oldrel-1)
cannot read from connection
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ubuntu-latest (oldrel-1)
cannot read from connection
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ubuntu-latest (oldrel-1)
cannot read from connection
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ubuntu-latest (oldrel-1)
trying to use CRAN without setting a mirror
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ubuntu-latest (oldrel-1)
cannot read from connection
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ubuntu-latest (oldrel-1)
there is no package called ‘nsga2R’
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ubuntu-latest (oldrel-1)
Can't combine `..1$weight` <double[,31]> and `..2$weight` <double[,42]>.
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macos-latest (release)
Can't combine `..1$weight` <double[,22]> and `..3$weight` <double[,12]>.
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macos-latest (release)
Can't combine `..1$weight` <double[,63]> and `..2$weight` <double[,53]>.
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macos-latest (release)
The total size of the 19 globals exported for future expression (‘FUN()’) is 2.81 GiB.. This exceeds the maximum allowed size of 500.00 MiB (option 'future.globals.maxSize'). The three largest globals are ‘FUN’ (2.54 GiB of class ‘function’), ‘raw_umi’ (272.22 MiB of class ‘S4’) and ‘model_pars_fit’ (1.72 MiB of class ‘list’)
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macos-latest (release)
Can't combine `..1$weight` <double[,19]> and `..2$weight` <double[,17]>.
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macos-latest (release)
there is no package called ‘DiagrammeRsvg’
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macos-latest (release)
trying to use CRAN without setting a mirror
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macos-latest (release)
Can't select columns that don't exist.
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macos-latest (release)
there is no package called ‘nsga2R’
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macos-latest (release)
cannot read from connection
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macos-latest (release)
Can't combine `..1$weight` <double[,31]> and `..2$weight` <double[,42]>.
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macos-latest (release)
No such keg: /opt/homebrew/Cellar/pkg-config@0.29.2
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windows-latest (release)
cannot read from connection
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windows-latest (release)
cannot read from connection
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windows-latest (release)
cannot read from connection
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windows-latest (release)
cannot read from connection
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windows-latest (release)
cannot read from connection
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windows-latest (release)
cannot read from connection
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windows-latest (release)
trying to use CRAN without setting a mirror
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windows-latest (release)
cannot read from connection
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windows-latest (release)
there is no package called 'nsga2R'
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windows-latest (release)
cannot read from connection
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ubuntu-latest (release)
Can't combine `..1$weight` <double[,22]> and `..3$weight` <double[,12]>.
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ubuntu-latest (release)
cannot read from connection
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ubuntu-latest (release)
Can't combine `..1$weight` <double[,63]> and `..2$weight` <double[,53]>.
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ubuntu-latest (release)
cannot read from connection
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ubuntu-latest (release)
cannot read from connection
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ubuntu-latest (release)
trying to use CRAN without setting a mirror
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ubuntu-latest (release)
cannot read from connection
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ubuntu-latest (release)
there is no package called ‘nsga2R’
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ubuntu-latest (release)
Can't combine `..1$weight` <double[,31]> and `..2$weight` <double[,42]>.
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ubuntu-latest (release)
cannot read from connection
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ubuntu-latest (devel)
cannot read from connection
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ubuntu-latest (devel)
cannot read from connection
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ubuntu-latest (devel)
Can't combine `..1$weight` <double[,63]> and `..2$weight` <double[,53]>.
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ubuntu-latest (devel)
Can't combine `..1$weight` <double[,19]> and `..2$weight` <double[,17]>.
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ubuntu-latest (devel)
there is no package called ‘DiagrammeRsvg’
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ubuntu-latest (devel)
trying to use CRAN without setting a mirror
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ubuntu-latest (devel)
Can't select columns that don't exist.
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ubuntu-latest (devel)
there is no package called ‘nsga2R’
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ubuntu-latest (devel)
Can't combine `..1$weight` <double[,31]> and `..2$weight` <double[,42]>.
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ubuntu-latest (devel)
Can't combine `..1$weight` <double[,59]> and `..2$weight` <double[,43]>.
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ubuntu-latest (oldrel-1)
Cache not found for keys: Ubuntu 24.04.1 LTS-R version 4.3.3 (2024-02-29)-1-9bac9a04c222493e507269644e3d74c1b83a7a80aac3d10f9e363bf69a2a0f3d, Ubuntu 24.04.1 LTS-R version 4.3.3 (2024-02-29)-1-
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ubuntu-latest (oldrel-1)
'::' or ':::' imports not declared from:
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ubuntu-latest (oldrel-1)
get_expressed_genes:
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ubuntu-latest (oldrel-1)
Missing link or links in documentation object 'get_ligand_target_links_oi.Rd':
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ubuntu-latest (oldrel-1)
Functions or methods with usage in documentation object 'get_optimized_parameters_nsga2r' but not in code:
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ubuntu-latest (oldrel-1)
Docum
10000
ented arguments not in \usage in documentation object 'get_lfc_celltype':
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ubuntu-latest (oldrel-1)
LazyData DB of 5.8 MB without LazyDataCompression set
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ubuntu-latest (oldrel-1)
Files in the 'vignettes' directory but no files in 'inst/doc':
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ubuntu-latest (oldrel-1)
Directory 'inst/doc' does not exist.
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macos-latest (release)
Cache not found for keys: macOS Sonoma 14.7.2-R version 4.4.2 (2024-10-31)-1-4ddb6a128ff975a0429bc094b00f63d1ba42e26c4465f20331cb43d1922e7075, macOS Sonoma 14.7.2-R version 4.4.2 (2024-10-31)-1-
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macos-latest (release)
'::' or ':::' imports not declared from:
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macos-latest (release)
get_expressed_genes:
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macos-latest (release)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
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macos-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
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macos-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
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macos-latest (release)
LazyData DB of 5.8 MB without LazyDataCompression set
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macos-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
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macos-latest (release)
Directory 'inst/doc' does not exist.
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macos-latest (release)
the standard deviation is zero
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macos-latest (release)
pkgconf 2.3.0_1 is already installed and up-to-date.
To reinstall 2.3.0_1, run:
brew reinstall pkgconf
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macos-latest (release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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windows-latest (release)
Cache not found for keys: Windows Server 2022 x64 (build 20348)-R version 4.4.2 (2024-10-31 ucrt)-1-1c5ab0cdc8f59b68998c5fd48e0bc07910dc0077305dc0f7d51cda4633caf6b6, Windows Server 2022 x64 (build 20348)-R version 4.4.2 (2024-10-31 ucrt)-1-
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windows-latest (release)
'::' or ':::' imports not declared from:
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windows-latest (release)
get_expressed_genes:
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windows-latest (release)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
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windows-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
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windows-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
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windows-latest (release)
LazyData DB of 5.5 MB without LazyDataCompression set
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windows-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
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windows-latest (release)
Directory 'inst/doc' does not exist.
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ubuntu-latest (release)
Cache not found for keys: Ubuntu 24.04.1 LTS-R version 4.4.2 (2024-10-31)-1-e0c77669f940c5bdc8b7d9ba272d2becb469d6c95a1d236c18bc485f7a940381, Ubuntu 24.04.1 LTS-R version 4.4.2 (2024-10-31)-1-
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ubuntu-latest (release)
'::' or ':::' imports not declared from:
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ubuntu-latest (release)
get_expressed_genes:
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ubuntu-latest (release)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
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ubuntu-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
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ubuntu-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
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ubuntu-latest (release)
LazyData DB of 5.5 MB without LazyDataCompression set
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ubuntu-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
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ubuntu-latest (release)
Directory 'inst/doc' does not exist.
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ubuntu-latest (release)
the standard deviation is zero
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ubuntu-latest (devel)
Cache not found for keys: Ubuntu 24.04.1 LTS-R version 4.5.0 (ge:16; iid:2fdf6c18-697a-4ba7-b8ef-11c0d92f1327)-1-c5caa5c781a9878f05dbae2d06c87a2831faefab626af6887ca69e2a0af2ad6a, Ubuntu 24.04.1 LTS-R version 4.5.0 (ge:16; iid:2fdf6c18-697a-4ba7-b8ef-11c0d92f1327)-1-
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ubuntu-latest (devel)
'::' or ':::' imports not declared from:
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ubuntu-latest (devel)
get_expressed_genes:
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ubuntu-latest (devel)
Missing link(s) in Rd file 'get_ligand_target_links_oi.Rd':
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ubuntu-latest (devel)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
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ubuntu-latest (devel)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
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ubuntu-latest (devel)
LazyData DB of 5.5 MB without LazyDataCompression set
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ubuntu-latest (devel)
Files in the 'vignettes' directory but no files in 'inst/doc':
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ubuntu-latest (devel)
Directory 'inst/doc' does not exist.
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ubuntu-latest (devel)
the standard deviation is zero
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Artifacts
Produced during runtime
| Name | Size | |
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Linux-X64-rdevel-2-results
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47.4 MB |
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Linux-X64-roldrel-1-4-results
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43.5 MB |
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Linux-X64-rrelease-3-results
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43.2 MB |
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Windows-X64-rrelease-1-results
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43.2 MB |
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macOS-ARM64-rrelease-0-results
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43.5 MB |
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