This repository provides minimal working examples for the looper pipeline submission engine.
This repository contains examples
/minimal
- A basic example pipeline and project./intermediate
- An intermediate example pipeline and project with a couple extra options./advanced
- A more advanced example, showcasing the capabilities of Looper./pephub
- Example of how to point looper to PEPhub./pipestat
- Example of a pipeline that uses pipestat for recording results./csv
- How to use a pipeline with a CSV sample table (no YAML config)
Each example contains:
- A looper config file (
.looper.yaml
). - Sample data plus metadata in PEP format (or pointer to PEPhub).
- A looper-compatible pipeline.
Explanation and results of running the above examples can be found at Looper: Hello World