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@pepkit

Portable Encapsulated Projects

Standardized sample metadata structure for biological research

Pinned

  1. peppy peppy Public

    Project metadata manager for PEPs in Python

    Python 37 13

  2. looper looper Public

    A job submitter for Portable Encapsulated Projects

    Python 20 7

  3. geofetch geofetch Public

    Builds a PEP from SRA or GEO accessions

    Python 43 5

  4. pepr pepr Public

    Project metadata manager for PEPs in R

    R 4 1

  5. pepspec pepspec Public

    Documentation for PEP specification and all PEPkit software

    HTML 10 4

  6. pephub pephub Public

    A web API and database for biological sample metadata

    TypeScript 12 2

Repositories

Showing 10 of 43 repositories
  • hello_looper Public

    A Hello World! example repository for looper

    pepkit/hello_looper’s past year of commit activity
    Python 0 5 4 0 Updated Aug 26, 2024
  • pepspec Public

    Documentation for PEP specification and all PEPkit software

    pepkit/pepspec’s past year of commit activity
    HTML 10 4 6 1 Updated Aug 26, 2024
  • pephub Public

    A web API and database for biological sample metadata

    pepkit/pephub’s past year of commit activity
    TypeScript 12 BSD-2-Clause 2 47 (1 issue needs help) 1 Updated Aug 26, 2024
  • looper Public

    A job submitter for Portable Encapsulated Projects

    pepkit/looper’s past year of commit activity
    Python 20 BSD-2-Clause 7 18 2 Updated Aug 26, 2024
  • pipestat Public

    Pipeline results reporting package

    pepkit/pipestat’s past year of commit activity
    Python 4 BSD-2-Clause 2 6 0 Updated Aug 26, 2024
  • pephubclient Public

    A tool to provide Python and CLI interface and Python API for PEPhub.

    pepkit/pephubclient’s past year of commit activity
    Python 3 BSD-2-Clause 0 7 (2 issues need help) 0 Updated Aug 21, 2024
  • geopephub Public

    Automatic uploader of GEO metadata to PEPhub.

    pepkit/geopephub’s past year of commit activity
    Python 0 BSD-2-Clause 0 4 (1 issue needs help) 1 Updated Aug 21, 2024
  • pepr Public

    Project metadata manager for PEPs in R

    pepkit/pepr’s past year of commit activity
    R 4 1 2 1 Updated Aug 5, 2024
  • peppy Public

    Project metadata manager for PEPs in Python

    pepkit/peppy’s past year of commit activity
    Python 37 BSD-2-Clause 13 28 (1 issue needs help) 1 Updated Jul 25, 2024
  • pepdbagent Public

    Database for storing sample metadata

    pepkit/pepdbagent’s past year of commit activity
    Python 2 BSD-2-Clause 1 8 (1 issue needs help) 0 Updated Jul 25, 2024
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