8000 Tags · mojaie/MolecularGraph.jl · GitHub
[go: up one dir, main page]

Skip to content

Tags: mojaie/MolecularGraph.jl

Tags

v0.17.3

Toggle v0.17.3's commit message
[Diff since v0.17.2](v0.17.2...v0.17.3)

- Fixed `mincycles` (#119)
- Fixed package compiler scripts

**Merged pull requests:**
- CompatHelper: bump compat for MakieCore to 0.9, (keep existing compat) (#120) (@github-actions[bot])

**Closed issues:**
- Some oxygens appear to be SP3 hybridized and aromatic at the same time (#100)
- Breaking changes in version 0.16.0 (#105)
- Modeling and application of high quantities organic molecules. (#118)

v0.17.2

Toggle v0.17.2's commit message
[Diff since v0.17.1](v0.17.1...v0.17.2)

- Fixed `rem_vertex` (#114)
- The default destination path of the compiled package is now `/usr/local/moleculargraphjl`
- The behavior of stereocenters with an unnecessarily high number of wedges has been clarified.
- Fixed serialization of molecules with invalid stereochemistry.

**Merged pull requests:**
- Fix + test to rem_vertex (#114) (@pw0908)
- CompatHelper: bump compat for Colors to 0.13, (keep existing compat) (#116) (@github-actions[bot])
- CompatHelper: bump compat for GeometryBasics to 0.5, (keep existing compat) (#117) (@github-actions[bot])

**Closed issues:**
- Bug with rem_vertex! with next-to-edge atoms (#113)
- Bond length (#115)

v0.17.1

Toggle v0.17.1's commit message
[Diff since v0.17.0](v0.17.0...v0.17.1)

- The library builder (built with PackageCompiler) is now Julia v1.11 compatible.
- Fixed inappropriate size of atom indices and highlights when exporting very large PNG structure images.

v0.17.0

Toggle v0.17.0's commit message
[Diff since v0.16.1](v0.16.1...v0.17.0)

- Improved valence and aromaticity determination algorithms
- Improved molecule metadata access (e.g. SDFIle option block)

**Merged pull requests:**
- CompatHelper: bump compat for MakieCore to 0.8, (keep existing compat) (#108) (@github-actions[bot])
- Create NEWS.md (#109) (@timholy)

**Closed issues:**
- API changes in v0.15.0 (#98)

v0.16.1

Toggle v0.16.1's commit message
[Diff since v0.16.0](v0.16.0...v0.16.1)

- Fixed wrong stereochemistry of SMILES molecules
- SDFile reader error logs can be stored in gprops instead of standard output

v0.16.0

Toggle v0.16.0's commit message
[Diff since v0.15.2](v0.15.2...v0.16.0)

- `html_fixed_size` and `html_grid` now takes MolGraph objects, not SVG.
- Some molecule parameter methods for 2D drawing (e. g. is_atom_visible, double_bond_style) are no longer exposed.
- Added Cairo.jl to the dependencies

v0.15.2

Toggle v0.15.2's commit message
[Diff since v0.15.1](v0.15.1...v0.15.2)

**Merged pull requests:**
- CompatHelper: add new compat entry for Statistics at version 1, (keep existing compat) (#103) (@github-actions[bot])
- CompatHelper: bump compat for MakieCore to 0.7, (keep existing compat) (#104) (@github-actions[bot])

**Closed issues:**
- Coulomb matrices calculation (#99)
- Merging edgemincyclebasis into Graphs.jl (#101)
- Will has_exact_match care about trivial hydrogens or chiral centers?  (#102)

v0.15.1

Toggle v0.15.1's commit message
[Diff since v0.15.0](v0.15.0...v0.15.1)

v0.15.0

Toggle v0.15.0's commit message
[Diff since v0.14.3](v0.14.3...v0.15.0)

**Closed issues:**
- coordgen does not work with Julia 1.9 (#93)

**Merged pull requests:**
- CompatHelper: add new compat entry for DelimitedFiles at version 1, (keep existing compat) (#94) (@github-actions[bot])
- Support sdf and mol generation from inchi string (#95) (@hhaensel)

v0.14.3

Toggle v0.14.3's commit message
[Diff since v0.14.2](v0.14.2...v0.14.3)

0