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Releases: mojaie/MolecularGraph.jl

v0.17.3

26 Jan 14:53
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MolecularGraph v0.17.3

Diff since v0.17.2

  • Fixed mincycles (#119)
  • Fixed package compiler scripts

Merged pull requests:

  • CompatHelper: bump compat for MakieCore to 0.9, (keep existing compat) (#120) (@github-actions[bot])

Closed issues:

  • Some oxygens appear to be SP3 hybridized and aromatic at the same time (#100)
  • Breaking changes in version 0.16.0 (#105)
  • Modeling and application of high quantities organic molecules. (#118)

v0.17.2

19 Nov 14:56
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MolecularGraph v0.17.2

Diff since v0.17.1

  • Fixed rem_vertex (#114)
  • The default destination path of the compiled package is now /usr/local/moleculargraphjl
  • The behavior of stereocenters with an unnecessarily high number of wedges has been clarified.
  • Fixed serialization of molecules with invalid stereochemistry.

Merged pull requests:

  • Fix + test to rem_vertex (#114) (@pw0908)
  • CompatHelper: bump compat for Colors to 0.13, (keep existing compat) (#116) (@github-actions[bot])
  • CompatHelper: bump compat for GeometryBasics to 0.5, (keep existing compat) (#117) (@github-actions[bot])

Closed issues:

  • Bug with rem_vertex! with next-to-edge atoms (#113)
  • Bond length (#115)

v0.17.1

21 Jul 01:54
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MolecularGraph v0.17.1

Diff since v0.17.0

  • The library builder (built with PackageCompiler) is now Julia v1.11 compatible.
  • Fixed inappropriate size of atom indices and highlights when exporting very large PNG structure images.

v0.17.0

18 Jul 14:40
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MolecularGraph v0.17.0

Diff since v0.16.1

  • Improved valence and aromaticity determination algorithms
  • Improved molecule metadata access (e.g. SD 8000 FIle option block)

Merged pull requests:

  • CompatHelper: bump compat for MakieCore to 0.8, (keep existing compat) (#108) (@github-actions[bot])
  • Create NEWS.md (#109) (@timholy)

Closed issues:

  • API changes in v0.15.0 (#98)

v0.16.1

08 Apr 11:21
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MolecularGraph v0.16.1

Diff since v0.16.0

  • Fixed wrong stereochemistry of SMILES molecules
  • SDFile reader error logs can be stored in gprops instead of standard output

v0.16.0

10 Jan 13:08
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MolecularGraph v0.16.0

Diff since v0.15.2

Breaking changes

  • html_fixed_size and html_grid now takes MolGraph objects, not SVG.
  • Some molecule parameter methods for 2D drawing (e. g. is_atom_visible, double_bond_style) are no longer exposed.
  • Added Cairo.jl to the dependencies

v0.15.2

13 Dec 00:05
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MolecularGraph v0.15.2

Diff since v0.15.1

Merged pull requests:

  • CompatHelper: add new compat entry for Statistics at version 1, (keep existing compat) (#103) (@github-actions[bot])
  • CompatHelper: bump compat for MakieCore to 0.7, (keep existing compat) (#104) (@github-actions[bot])

Closed issues:

  • Coulomb matrices calculation (#99)
  • Merging edgemincyclebasis into Graphs.jl (#101)
  • Will has_exact_match care about trivial hydrogens or chiral centers? (#102)

v0.15.1

03 Jul 07:24
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MolecularGraph v0.15.1

Diff since v0.15.0

v0.15.0

29 Jun 00:57
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MolecularGraph v0.15.0

Diff since v0.14.3

Closed issues:

  • coordgen does not work with Julia 1.9 (#93)

Merged pull requests:

  • CompatHelper: add new compat entry for DelimitedFiles at version 1, (keep existing compat) (#94) (@github-actions[bot])
  • Support sdf and mol generation from inchi string (#95) (@hhaensel)

v0.14.3

17 May 10:17
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MolecularGraph v0.14.3

Diff since v0.14.2

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