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@DataBiosphere

Data Biosphere

We are creating a vibrant ecosystem of interoperable modules and data environments for the biomedical community.

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  1. toil toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    Python 909 241

  2. dsub dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    Python 266 45

  3. terra-ui terra-ui Public

    Web user interface for the Terra platform

    TypeScript 53 21

  4. leonardo leonardo Public

    Notebook service

    Scala 44 21

  5. terra-docker terra-docker Public

    Jupyter Notebook 27 34

  6. job-manager job-manager Public

    Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

    TypeScript 26 5

Repositories

Showing 10 of 160 repositories
  • findable-ui Public
    DataBiosphere/findable-ui’s past year of commit activity
    TypeScript 1 Apache-2.0 0 24 0 Updated Mar 14, 2025
  • terra-ui Public

    Web user interface for the Terra platform

    DataBiosphere/terra-ui’s past year of commit activity
    TypeScript 53 BSD-3-Clause 21 145 10 Updated Mar 14, 2025
  • azul Public

    Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP

    DataBiosphere/azul’s past year of commit activity
    Python 8 Apache-2.0 2 661 17 Updated M 8000 ar 14, 2025
  • terra-docker Public
    DataBiosphere/terra-docker’s past year of commit activity
    Jupyter Notebook 27 BSD-3-Clause 34 21 8 Updated Mar 14, 2025
  • job-manager Public

    Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

    DataBiosphere/job-manager’s past year of commit activity
    TypeScript 26 BSD-3-Clause 5 104 30 Updated Mar 13, 2025
  • duos-ui Public

    Broad Institute Data Use Oversight System

    DataBiosphere/duos-ui’s past year of commit activity
    JavaScript 9 BSD-3-Clause 4 0 2 Updated Mar 13, 2025
  • jade-data-repo Public

    The Terra Data Repository built by the Jade team.

    DataBiosphere/jade-data-repo’s past year of commit activity
    Java 13 BSD-3-Clause 5 0 2 Updated Mar 13, 2025
  • toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    DataBiosphere/toil’s past year of commit activity
    Python 909 Apache-2.0 241 389 (1 issue needs help) 14 Updated Mar 13, 2025
  • jade-data-repo-ui Public

    UI for the Jade Data Repo

    DataBiosphere/jade-data-repo-ui’s past year of commit activity
    TypeScript 4 BSD-3-Clause 1 0 2 Updated Mar 13, 2025
  • data-browser Public
    DataBiosphere/data-browser’s past year of commit activity
    Jupyter Notebook 11 Apache-2.0 4 95 1 Updated Mar 13, 2025
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