Hamid-Reza Rezaei

Wild boar (Sus scrofa) are widely distributed throughout the Old World. Most studies have focused on Europe and East Asia with the genetic diversity of West Asia being less well studied. In particular, the genetic variability and genetic structure of the Iranian populations are not yet known; gaps which prevent scientists from resolving the genetic relationships of the Eurasian wild boar. This paper is the first attempt to provide information about genetic relationships among modern Iranian populations of the Eurasian wild boar (S. scrofa) by sequencing 572 bp of the mitochondrial (mt) DNA control region. As a result of this investigation, it was discovered that Iran contains not only Middle Eastern haplotypes, but also shares haplotypes with Europe and East Asia. The Italian clade, which is endemic in Italy, is not identified in Iran, while all other clades, including Asiatic, European, Near East 1, and Near East 2 are found based on the phylogenetic tree and median-joining network. The results of this study illustrate that north west of Iran (specifically Southwest Caspian Sea) is the contact zone between the Asian (Near Eastern and Far Eastern), and the European clades. In light of the fact that the domestication of pigs occurs in Anatolia, this finding is important.

ABSTRACT The population genetics of the Afghan Pika (Ochotona rufescens) was studied in Northern Khorasan Province, Iran. For prediction of the genetic differentiation of four populations, the DNA of mitochondrial cytochrome b of 32 individuals from four areas was sequenced and a Bayesian analysis based on the HKY model was constructed. In total, 15 polymorphic sites, 1125 conserved sites (98.7%) and 14 different haplotypes were found. The phylogenetic tree resulting from the Bayesian analysis and network analysis showed that all samples were clustered in two major groups and the haplotypes of the four populations did not separate geographically. An analysis of molecular variance (AMOVA) indicated that a large majority of the genetic variance was due to the variance within populations. The results of fixation indices showed significant genetic structure among populations in both methods. The pairwise F-st revealed that two northern populations have a significant genetic differentiation from two southern populations, but no significance pairwise F-st value was demonstrated between the closed populations. Nei's genetic distances between closed populations were not significant, while significant values occurred between distant populations. It seems that there is not a major discontinuity between populations of Afghan Pika based on cyt-b mitochondrial gene. However, phylogenetic analysis did not separate populations and a large majority of the genetic variance was found within populations. However, AMOVA analysis showed a significant level of genetic structure among populations (p<0.001) and between groups (p<0.5). It seems that these results suggest shallow genetic differentiation between populations of different geographic groups.

ABSTRACT Wolves have the ability to live in different habitats. However, in recent years, in many areas wolf populations have drastically declined and some of them have disappeared. A major concern in the management of wolf populations is the hybridization between wolves and dogs. In some regions, in order to generate strong breeds of guard dogs, wolves and dogs are intentionally hybridized. In this study, gene flow between wolves and dogs in Iran was examined, using a combination of uniparental markers: the mitochondrial DNA control region and four Y chromosome microsatellites. The species of origin of each haplotype was attributed by phylogenetic analyses. A very limited number of haplotypes was shared, suggesting limited gene flow between wolves and dogs in Iran. However, possible factors promoting hybridization are still present in the country and should not be neglected in the future management of the wild species.