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2020 – today
- 2024
[j56]Madhumita Sushil
, Travis Zack, Divneet Mandair, Zhiwei Zheng, Ahmed Wali, Yan-Ning Yu, Yuwei Quan, Dmytro Lituiev, Atul J. Butte:
A comparative study of large language model-based zero-shot inference and task-specific supervised classification of breast cancer pathology reports. J. Am. Medical Informatics Assoc. 31(10): 2315-2327 (2024)- [j55]Nikita Mehandru, Brenda Y. Miao, Eduardo Rodriguez Almaraz, Madhumita Sushil, Atul J. Butte, Ahmed M. Alaa:
Evaluating large language models as agents in the clinic. npj Digit. Medicine 7(1) (2024) - [i14]Yu-Ning Huang, Michael I. Love, Cynthia Flaire Ronkowski, Dhrithi Deshpande, Lynn M. Schriml, Annie Wong-Beringer, Barend Mons, Russell Corbett-Detig, Christopher I Hunter, Jason H. Moore, Lana X. Garmire, T. B. K. Reddy, Winston A. Hide, Atul J. Butte, Mark D. Robinson, Serghei Mangul:
Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies. CoRR abs/2401.02965 (2024) - [i13]Madhumita Sushil, Travis Zack, Divneet Mandair, Zhiwei Zheng, Ahmed Wali, Yan-Ning Yu, Yuwei Quan, Atul J. Butte:
A comparative study of zero-shot inference with large language models and supervised modeling in breast cancer pathology classification. CoRR abs/2401.13887 (2024) - [i12]Brenda Y. Miao, Christopher Y. K. Williams, Ebenezer Chinedu-Eneh, Travis Zack, Emily Alsentzer, Atul J. Butte, Irene Y. Chen:
Identifying Reasons for Contraceptive Switching from Real-World Data Using Large Language Models. CoRR abs/2402.03597 (2024) - [i11]Brenda Y. Miao, Irene Y. Chen, Christopher YK Williams, Jaysón M. Davidson, Augusto Garcia-Agundez, Harry Sun, Travis Zack, Atul J. Butte, Madhumita Sushil:
Updating the Minimum Information about CLinical Artificial Intelligence (MI-CLAIM) checklist for generative modeling research. CoRR abs/2403.02558 (2024) - [i10]Shenghuan Sun, Gregory M. Goldgof, Alexander Schubert, Zhiqing Sun, Thomas Hartvigsen, Atul J. Butte, Ahmed M. Alaa:
Dr-LLaVA: Visual Instruction Tuning with Symbolic Clinical Grounding. CoRR abs/2405.19567 (2024) - 2023
- [j54]Michelle Wang, Madhumita Sushil, Brenda Y. Miao, Atul J. Butte:
Bottom-up and top-down paradigms of artificial intelligence research approaches to healthcare data science using growing real-world big data. J. Am. Medical Informatics Assoc. 30(7): 1323-1332 (2023) - [c39]Shenghuan Sun, Gregory M. Goldgof, Atul J. Butte, Ahmed M. Alaa:
Aligning Synthetic Medical Images with Clinical Knowledge using Human Feedback. NeurIPS 2023 - [i9]Madhumita Sushil, Atul J. Butte, Ewoud Schuit, Maarten van Smeden, Artuur M. Leeuwenberg:
Cross-institution text mining to uncover clinical associations: a case study relating social factors and code status in intensive care medicine. CoRR abs/2301.06570 (2023) - [i8]Shenghuan Sun, Travis Zack, Christopher Y. K. Williams, Atul J. Butte, Madhumita Sushil:
Revealing the impact of social circumstances on the selection of cancer therapy through natural language processing of social work notes. CoRR abs/2306.09877 (2023) - [i7]Shenghuan Sun, Gregory M. Goldgof, Atul J. Butte, Ahmed M. Alaa:
Aligning Synthetic Medical Images with Clinical Knowledge using Human Feedback. CoRR abs/2306.12438 (2023) - [i6]Madhumita Sushil, Vanessa E. Kennedy, Brenda Y. Miao, Divneet Mandair, Travis Zack, Atul J. Butte:
Extracting detailed oncologic history and treatment plan from medical oncology notes with large language models. CoRR abs/2308.03853 (2023) - [i5]Nikita Mehandru, Brenda Y. Miao, Eduardo Rodriguez Almaraz, Madhumita Sushil, Atul J. Butte, Ahmed M. Alaa:
Large Language Models as Agents in the Clinic. CoRR abs/2309.10895 (2023) - 2022
- [j53]J. Russell Huie, Rohit Vashisht, Anoop Galivanche, Constance Hadjadj, Saam Morshed, Atul J. Butte, Adam R. Ferguson, Conor O'Neill:
Toward a causal model of chronic back pain: Challenges and opportunities. Frontiers Comput. Neurosci. 16 (2022) - [j52]Charlotte A. Nelson, Riley Bove, Atul J. Butte, Sergio E. Baranzini:
Embedding electronic health records onto a knowledge network recognizes prodromal features of multiple sclerosis and predicts diagnosis. J. Am. Medical Informatics Assoc. 29(3): 424-434 (2022) - [j51]Daniel R. Wong, Jay Conrad, Noah R. Johnson, Jacob Ayers, Annelies Laeremans, Joanne C. Lee, Jisoo Lee, Stanley B. Prusiner, Sourav Bandyopadhyay, Atul J. Butte, Nick A. Paras, Michael J. Keiser:
Trans-channel fluorescence learning improves high-content screening for Alzheimer's disease therapeutics. Nat. Mach. Intell. 4(6): 583-595 (2022) - [c38]Jaysón M. Davidson, Rohit Davidson, Ayan Patel, Atul J. Butte:
Understanding the Impact of Demographics and Socioeconomic Parameters on Treatment Selection and Utilization in Type 2 Diabetes. AMIA 2022 - [c37]Lakshmi Radhakrishnan, Gundolf Schenk, Kathlene Muenzen, Boris Oskotsky, Sharat Israni, Atul J. Butte:
Deidentifying a Corpus of 100 Million Clinical Text Documents for Information Extraction: Lessons Learned. AMIA 2022 - [c36]Madhumita Sushil, Dana Ludwig, Atul J. Butte, Vivek A. Rudrapatna:
Training a Transferrable Clinical Language Model from 75 million Notes. AMIA 2022 - [i4]Madhumita Sushil, Dana Ludwig, Atul J. Butte, Vivek A. Rudrapatna:
Developing a general-purpose clinical language inference model from a large corpus of clinical notes. CoRR abs/2210.06566 (2022) - [i3]Shenghuan Sun, Travis Zack, Madhumita Sushil, Atul J. Butte:
Topic Modeling on Clinical Social Work Notes for Exploring Social Determinants of Health Factors. CoRR abs/2212.01462 (2022) - 2021
- [j50]Xinran Liu, James Anstey, Ron C. Li, Chethan Sarabu, Reiri Sono, Atul J. Butte:
Rethinking PICO in the Machine Learning Era: ML-PICO. Appl. Clin. Inform. 12(02): 407-416 (2021) - [j49]Subha Madhavan, Lisa Bastarache, Jeffrey S. Brown, Atul J. Butte, David A. Dorr, Peter J. Embí, Charles P. Friedman, Kevin B. Johnson, Jason H. Moore, Isaac S. Kohane, Philip R. O. Payne, Jessica D. Tenenbaum, Mark G. Weiner, Adam B. Wilcox, Lucila Ohno-Machado:
Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: a perspective from 15 academic medical centers. J. Am. Medical Informatics Assoc. 28(2): 393-401 (2021) - [c35]Douglas Arneson, Rohit Vashisht, Vivek A. Rudrapatna, Atul J. Butte:
A Generalizable Framework for Cost-Effectiveness Analysis of Antihypertensive Drugs Leveraging Real-World Evidence. AMIA 2021 - [c34]Atul J. Butte, Christopher A. Longhurst, Amy Abernethy, Gretchen P. Jackson, Philip R. O. Payne:
Use of Healthcare Information Technology and Data Platforms to Inform Pandemic Response: Perspectives at the Intersection of Academic Healthcare Provider Organizations and Industry Partners. AMIA 2021 - [c33]Navchetan Kaur, Boris Oskotsky, Atul J. Butte, Zicheng Hu:
Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients. AMIA 2021 - 2020
- [j48]Beau Norgeot, Kathleen Muenzen, Thomas A. Peterson, Xuancheng Fan, Benjamin S. Glicksberg, Gundolf Schenk, Eugenia Rutenberg, Boris Oskotsky, Marina Sirota, Jinoos Yazdany, Gabriela Schmajuk, Dana Ludwig, Theodore C. Goldstein, Atul J. Butte:
Protected Health Information filter (Philter): accurately and securely de-identifying free-text clinical notes. npj Digit. Medicine 3 (2020) - [j47]Nisarg A. Patel, Atul J. Butte:
Characteristics and challenges of the clinical pipeline of digital therapeutics. npj Digit. Medicine 3 (2020)
2010 – 2019
- 2019
- [j46]Zicheng Hu, Benjamin S. Glicksberg, Atul J. Butte:
Robust prediction of clinical outcomes using cytometry data. Bioinform. 35(7): 1197-1203 (2019) - [j45]Benjamin S. Glicksberg, Boris Oskotsky, Phyllis M. Thangaraj, Nicholas Giangreco, Marcus A. Badgeley, Kipp W. Johnson, Debajyoti Datta, Vivek A. Rudrapatna, Nadav Rappoport, Mark M. Shervey, Riccardo Miotto, Theodore C. Goldstein, Eugenia Rutenberg, Remi Frazier, Nelson Lee, Sharat Israni, Rick Larsen, Bethany Percha, Li Li, Joel T. Dudley, Nicholas P. Tatonetti, Atul J. Butte:
PatientExploreR: an extensible application for dynamic visualization of patient clinical history from electronic health records in the OMOP common data model. Bioinform. 35(21): 4515-4518 (2019) - [c32]Yves A. Lussier, Atul J. Butte, Haiquan Li, Rong Chen, Jason H. Moore:
Translational informatics of population Health: How large biomolecular and clinical datasets unite. PSB 2019: 455 - 2018
- [j44]Alvin Rajkomar, Eyal Oren, Kai Chen, Andrew M. Dai, Nissan Hajaj, Michaela Hardt, Peter J. Liu, Xiaobing Liu, Jake Marcus, Mimi Sun, Patrik Sundberg, Hector Yee, Kun Zhang, Yi Zhang, Gerardo Flores, Gavin E. Duggan, Jamie Irvine, Quoc Le, Kurt Litsch, Alexander Mossin, Justin Tansuwan, De Wang, James Wexler, Jimbo Wilson, Dana Ludwig, Samuel L. Volchenboum, Katherine Chou, Michael Pearson, Srinivasan Madabushi, Nigam H. Shah, Atul J. Butte, Michael D. Howell, Claire Cui, Gregory S. Corrado, Jeffrey Dean:
Scalable and accurate deep learning with electronic health records. npj Digit. Medicine 1 (2018) - [i2]Alvin Rajkomar, Eyal Oren, Kai Chen, Andrew M. Dai, Nissan Hajaj, Peter J. Liu, Xiaobing Liu, Mimi Sun, Patrik Sundberg, Hector Yee, Kun Zhang, Gavin E. Duggan, Gerardo Flores, Michaela Hardt, Jamie Irvine, Quoc V. Le, Kurt Litsch, Jake Marcus, Alexander Mossin, Justin Tansuwan, De Wang, James Wexler, Jimbo Wilson, Dana Ludwig, Samuel L. Volchenboum, Katherine Chou, Michael Pearson, Srinivasan Madabushi, Nigam H. Shah, Atul J. Butte, Michael D. Howell, Claire Cui, Greg Corrado, Jeff Dean:
Scalable and accurate deep learning for electronic health records. CoRR abs/1801.07860 (2018) - [i1]Beau Norgeot, Dmytro Lituiev, Benjamin S. Glicksberg, Atul J. Butte:
Time Aggregation and Model Interpretation for Deep Multivariate Longitudinal Patient Outcome Forecasting Systems in Chronic Ambulatory Care. CoRR abs/1811.12589 (2018) - 2017
- [c31]Jieming Chen, Sanchita Bhattacharya, Marina Sirota, Minnie M. Sarwal, Atul J. Butte:
Ethnic and gender disparity in organ transplant clinical trials and electronic health records. CRI 2017 - 2016
- [j43]Jiao Li, Si Zheng, Bin Chen, Atul J. Butte, S. Joshua Swamidass, Zhiyong Lu:
A survey of current trends in computational drug repositioning. Briefings Bioinform. 17(1): 2-12 (2016) - [j42]Nophar Geifman, Sanchita Bhattacharya, Atul J. Butte:
Immune modulators in disease: integrating knowledge from the biomedical literature and gene expression. J. Am. Medical Informatics Assoc. 23(3): 617-626 (2016) - [j41]Steven C. Bagley, Marina Sirota, Richard O. Chen, Atul J. Butte, Russ B. Altman:
Constraints on Biological Mechanism from Disease Comorbidity Using Electronic Medical Records and Database of Genetic Variants. PLoS Comput. Biol. 12(4) (2016) - [c30]Nophar Geifman, Atul J. Butte:
Do Cancer Clinical Trial Populations Truly Represent Cancer Patients? A Comparison of Open Clinical Trials to the Cancer Genome Atlas. PSB 2016: 309-320 - 2015
- [c29]Atul J. Butte, Nigam Shah, Nicholas P. Tatonetti, Hua Xu, Ping Zhang:
Recent Advances in Computational Drug Repositioning. AMIA 2015 - [c28]Dexter Hadley, James Pan, Osama M. El-Sayed, Jihad Al-Jabban, Imad Al-Jabban, Tej Azad, Shuaib Raza, Mohamed Hadied, Bin Chen, Hyojung Paik, Sanchita Bhattacharya, Marina Sirota, Atul J. Butte:
Human Computation of Big Data in Biomedicine: Making STAR annotations for large scale functional characterization of disease. AMIA 2015 - [c27]Patrick J. Dunn, Elizabeth Thomson, John Campbell, Thomas Smith, Vincent Desborough, Jeffrey A. Wiser, Henry Schaefer, Sanchita Bhattacharya, Atul J. Butte, Sandra Andorf, Mazen Nasrallah:
ImmPort: Shared research data for bioinformatics and immunology. BIBM 2015: 607-610 - [c26]Menghua Wu, Marina Sirota, Atul J. Butte, Bin Chen:
Characteristics of Drug Combination Therapy in Oncology by Analyzing Clinical Trial Data on Clinicaltrials.Gov. Pacific Symposium on Biocomputing 2015: 68-79 - [c25]Hua Fan-Minogue, Bin Chen, Weronika Sikora-Wohlfeld, Marina Sirota, Atul J. Butte:
A Systematic Assessment of Linking Gene Expression with Genetic Variants for Prioritizing Candidate Targets. Pacific Symposium on Biocomputing 2015: 383-394 - 2014
- [c24]Luke Yancy Jr., Atul J. Butte:
Investigating the Genetic Architecture of Pulmonary Arterial Hypertension Shared with Other Diseases. AMIA 2014 - [c23]Sandra Andorf, Jennifer B. Bollyky, Patrick J. Dunn, Jeffrey A. Wiser, Sanchita Bhattacharya, Atul J. Butte:
Towards the characterization of normal peripheral immune cells with data from ImmPort. BCB 2014: 749-750 - [c22]Ravi D. Shankar, Sandra Andorf, Sanchita Bhattacharya, Jeffrey A. Wiser, Atul J. Butte:
RImmPort: enabling ready-for-analysis immunology research data. BCB 2014: 751 - [c21]S. Joshua Swamidass, Zhiyong Lu, Pankaj Agarwal, Atul J. Butte:
Session Introduction. Pacific Symposium on Biocomputing 2014: 110-113 - 2013
- [j40]Raymond K. Auerbach, Bin Chen, Atul J. Butte:
Relating genes to function: identifying enriched transcription factors using the ENCODE ChIP-Seq significance tool. Bioinform. 29(15): 1922-1924 (2013) - [j39]Atul J. Butte, Lucila Ohno-Machado:
Making it personal: translational bioinformatics. J. Am. Medical Informatics Assoc. 20(4): 595-596 (2013) - [c20]Atul J. Butte:
Translating a trillion points of data into therapies, diagnostics, and new insights into disease. DTMBIO 2013: 1-2 - [c19]Atul J. Butte, Doheon Lee, Hua Xu, Min Song:
DTMBIO 2013: international workshop on data and text mining in biomedical informatics. CIKM 2013: 2555-2556 - [c18]Zhiyong Lu, Pankaj Agarwal, Atul J. Butte:
Session Introduction. Pacific Symposium on Biocomputing 2013: 1-4 - [c17]Li Li, David Ruau, Rong Chen, Susan C. Weber, Atul J. Butte:
Systematic Identification of Risk Factors for Alzheimer's Disease Through Shared Genetic Architecture and Electronic Medical Records. Pacific Symposium on Biocomputing 2013: 224-235 - [e1]Atul J. Butte, Doheon Kim, Min Song, Hua Xu:
Proceeding of the 7rd International Workshop on Data and Text Mining in Bioinformatics, DTMBIO 2013, San Francisco, CA, USA, November 1, 2013. ACM 2013, ISBN 978-1-4503-2419-9 [contents] - 2012
- [j38]Chirag J. Patel, Rong Chen, Atul J. Butte:
Data-driven integration of epidemiological and toxicological data to select candidate interacting genes and environmental factors in association with disease. Bioinform. 28(12): 121-126 (2012) - [j37]Alexander A. Morgan, Vasilios J. Pyrgos, Kari C. Nadeau, Peter R. Williamson, Atul J. Butte:
Multiplex meta-analysis of RNA expression to identify genes with variants associated with immune dysfunction. J. Am. Medical Informatics Assoc. 19(2): 284-288 (2012) - [j36]Alexander A. Morgan, Rong Chen, Atul J. Butte:
Clinical utility of sequence-based genotype compared with that derivable from genotyping arrays. J. Am. Medical Informatics Assoc. 19(e1) (2012) - [j35]Purvesh Khatri, Marina Sirota, Atul J. Butte:
Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges. PLoS Comput. Biol. 8(2) (2012) - [j34]David Ruau, Joel Dudley, Rong Chen, Nicholas G. Phillips, Gary E. Swan, Laura Lazzeroni, J. David Clark, Atul J. Butte, Martin S. Angst:
Integrative Approach to Pain Genetics Identifies Pain Sensitivity Loci across Diseases. PLoS Comput. Biol. 8(6) (2012) - 2011
- [j33]Joel Dudley, Tarangini Deshpande, Atul J. Butte:
Exploiting drug-disease relationships for computational drug repositioning. Briefings Bioinform. 12(4): 303-311 (2011) - [j32]Jesse M. Engreitz, Rong Chen, Alexander A. Morgan, Joel Dudley, Rohan Mallelwar, Atul J. Butte:
ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression. Bioinform. 27(23): 3317-3318 (2011) - [j31]Atul J. Butte, Nigam H. Shah:
Computationally translating molecular discoveries into tools for medicine: translational bioinformatics articles now featured in JAMIA. J. Am. Medical Informatics Assoc. 18(4): 352-353 (2011) - [j30]Indra Neil Sarkar, Atul J. Butte, Yves A. Lussier, Peter Tarczy-Hornoch, Lucila Ohno-Machado:
Translational bioinformatics: linking knowledge across biological and clinical realms. J. Am. Medical Informatics Assoc. 18(4): 354-357 (2011) - [j29]David Ruau, Michael Mbagwu, Joel T. Dudley, Vijay Krishnan, Atul J. Butte:
Comparison of automated and human assignment of MeSH terms on publicly-available molecular datasets. J. Biomed. Informatics 44(Supplement-1): S39-S43 (2011) - [c16]Rong Chen, Atul J. Butte:
The Reference Human Genome Demonstrates High Risk of Type 1 Diabetes and Other Disorders. Pacific Symposium on Biocomputing 2011: 231-242 - [c15]Joel Dudley, Rong Chen, Atul J. Butte:
Matching Cancer Genomes to Established Cell Lines for Personalized Oncology. Pacific Symposium on Biocomputing 2011: 243-252 - 2010
- [j28]Jesse M. Engreitz, Alexander A. Morgan, Joel Dudley, Rong Chen, Rahul Thathoo, Russ B. Altman, Atul J. Butte:
Content-based microarray search using differential expression profiles. BMC Bioinform. 11: 603 (2010) - [j27]David P. Chen, Joel Dudley, Atul J. Butte:
Latent physiological factors of complex human diseases revealed by independent component analysis of clinarrays. BMC Bioinform. 11(S-9): S4 (2010) - [j26]Alexander A. Morgan, Purvesh Khatri, Richard Hayden Jones, Minnie M. Sarwal, Atul J. Butte:
Comparison of multiplex meta analysis techniques for understanding the acute rejection of solid organ transplants. BMC Bioinform. 11(S-9): S6 (2010) - [j25]Nicholas P. Tatonetti, Joel Dudley, Hersh Sagreiya, Atul J. Butte, Russ B. Altman:
An integrative method for scoring candidate genes from association studies: application to warfarin dosing. BMC Bioinform. 11(S-9): S9 (2010) - [j24]Yves A. Lussier, Atul J. Butte, Lawrence Hunter:
Current methodologies for translational bioinformatics. J. Biomed. Informatics 43(3): 355-357 (2010) - [j23]David P. Chen, Alexander A. Morgan, Atul J. Butte:
Validating pathophysiological models of aging using clinical electronic medical records. J. Biomed. Informatics 43(3): 358-364 (2010) - [j22]Silpa Suthram, Joel Dudley, Annie P. Chiang, Rong Chen, Trevor Hastie, Atul J. Butte:
Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets. PLoS Comput. Biol. 6(2) (2010) - [j21]Rong Chen, Tara K. Sigdel, Li Li, Neeraja Kambham, Joel Dudley, Szu-chuan Hsieh, R. Bryan Klassen, Amery Chen, Tuyen Caohuu, Alexander A. Morgan, Hannah A. Valantine, Kiran K. Khush, Minnie M. Sarwal, Atul J. Butte:
Differentially Expressed RNA from Public Microarray Data Identifies Serum Protein Biomarkers for Cross-Organ Transplant Rejection and Other Conditions. PLoS Comput. Biol. 6(9) (2010) - [c14]Sanchita Bhattacharya, Shai Shen-Orr, Holden T. Maecker, Laura Lazzeroni, Gary E. Swan, J. David Clark, Martin S. Angst, Atul J. Butte, Mark M. Davis:
Immunological response in normal healthy twins across age. BCB 2010: 657
2000 – 2009
- 2009
- [j20]Marc A. Schaub, Irene M. Kaplow, Marina Sirota, Chuong B. Do, Atul J. Butte, Serafim Batzoglou:
A Classifier-based approach to identify genetic similarities between diseases. Bioinform. 25(12) (2009) - [j19]Atul J. Butte, Indra Neil Sarkar, Marco Ramoni, Yves A. Lussier, Olga G. Troyanskaya:
Selected proceedings of the First Summit on Translational Bioinformatics 2008. BMC Bioinform. 10(S-2) (2009) - [j18]Yueyi I. Liu, Paul H. Wise, Atul J. Butte:
The "etiome": identification and clustering of human disease etiological factors. BMC Bioinform. 10(S-2) (2009) - [j17]Nigam H. Shah, Clément Jonquet, Annie P. Chiang, Atul J. Butte, Rong Chen, Mark A. Musen:
Ontology-driven indexing of public datasets for translational bioinformatics. BMC Bioinform. 10(S-2) (2009) - [j16]Adam D. Grossman, Mitchell J. Cohen, Geoffrey T. Manley, Atul J. Butte:
Infection in the intensive care unit alters physiological networks. BMC Bioinform. 10(S-9): 4 (2009) - [j15]Sangeeta B. English, Shou-Ching Shih, Marco Ramoni, Lois E. Smith, Atul J. Butte:
Use of Bayesian networks to probabilistically model and improve the likelihood of validation of microarray findings by RT-PCR. J. Biomed. Informatics 42(2): 287-295 (2009) - [j14]Joel Dudley, Atul J. Butte:
A Quick Guide for Developing Effective Bioinformatics Programming Skills. PLoS Comput. Biol. 5(12) (2009) - [c13]Joel Dudley, Atul J. Butte:
Identification of Discriminating Biomarkers for Human Disease Using Integrative Network Biology. Pacific Symposium on Biocomputing 2009: 27-38 - [c12]Shai Shen-Orr, Ofir Goldberger, Yael Garten, Yael Rosenberg-Hasson, Patricia A. Lovelace, David L. Hirschberg, Russ B. Altman, Mark M. Davis, Atul J. Butte:
Towards a Cytokine-Cell Interaction Knowledgebase of the Adaptive Immune System. Pacific Symposium on Biocomputing 2009: 439-450 - [c11]Yves A. Lussier, Younghee Lee, Predrag Radivojac, Yanay Ofran, Atul J. Butte, Maricel G. Kann:
Session Introduction. Pacific Symposium on Biocomputing 2009: 464-466 - 2008
- [j13]Rong Chen, Rohan Mallelwar, Ajit Thosar, Shivkumar Venkatasubrahmanyam, Atul J. Butte:
GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed. BMC Bioinform. 9 (2008) - [j12]Atul J. Butte:
Viewpoint Paper: Translational Bioinformatics: Coming of Age. J. Am. Medical Informatics Assoc. 15(6): 709-714 (2008) - [c10]Joel Dudley, David P. Chen, Atul J. Butte:
Using SNOMED CT For Translational Genomics Data Integration. KR-MED 2008 - [c9]Yves A. Lussier, Younghee Lee, Predrag Radivojac, Yanay Ofran, Marco Punta, Atul J. Butte, Maricel G. Kann:
Session Introduction. Pacific Symposium on Biocomputing 2008: 228-230 - [c8]David P. Chen, Susan C. Weber, Philip S. Constantinou, Todd A. Ferris, Henry J. Lowe, Atul J. Butte:
Novel Integration of Hospital Electronic Medical Records and Gene Expression Measurements to Identify Genetic Markers of Maturation. Pacific Symposium on Biocomputing 2008: 243-254 - [c7]Joel Dudley, Atul J. Butte:
Enabling Integrative Genomic Analysis of High Impact Human Diseases Through Text Mining. Pacific Symposium on Biocomputing 2008: 580-591 - 2007
- [j11]Sangeeta B. English, Atul J. Butte:
Evaluation and integration of 49 genome-wide experiments and the prediction of previously unknown obesity-related genes. Bioinform. 23(21): 2910-2917 (2007) - [c6]David P. Chen, Susan C. Weber, Philip S. Constantinou, Todd A. Ferris, Henry J. Lowe, Atul J. Butte:
Clinical Arrays of Laboratory Measures, or "Clinarrays", Built from an Electronic Health Record Enable Disease Subtyping by Severity. AMIA 2007 - [c5]Yi-An Lin, Annie P. Chiang, Ray Lin, Peggy Yao, Rong Chen, Atul J. Butte:
Methodologies for Extracting Functional Pharmacogenomic Experiments from International Repository. AMIA 2007 - 2006
- [c4]Atul J. Butte, Rong Chen:
Finding Disease-Related Genomic Experiments Within an International Repository: First Steps in Translational Bioinformatics. AMIA 2006 - 2005
- [j10]Cecily J. Wolfe, Isaac S. Kohane, Atul J. Butte:
Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks. BMC Bioinform. 6: 227 (2005) - 2004
- [j9]Dominic J. Allocco, Isaac S. Kohane, Atul J. Butte:
Quantifying the relationship between co-expression, co-regulation and gene function. BMC Bioinform. 5: 18 (2004) - 2003
- [j8]Kyungjoon Lee, Isaac S. Kohane, Atul J. Butte:
PGAGENE: integrating quantitative gene-specific results from the NHLBI Programs for Genomic Applications. Bioinform. 19(6): 778-779 (2003) - [j7]Ashish Nimgaonkar, Despina Sanoudou, Atul J. Butte, Judith N. Haslett, Louis M. Kunkel, Alan H. Beggs, Isaac S. Kohane:
Reproducibility of gene expression across generations of Affymetrix microarrays. BMC Bioinform. 4: 27 (2003) - 2002
- [j6]Winston Patrick Kuo, Tor-Kristian Jenssen, Atul J. Butte, Lucila Ohno-Machado, Isaac S. Kohane:
Analysis of matched mRNA measurements from two different microarray technologies. Bioinform. 18(3): 405-412 (2002) - [j5]Peter J. Park, Atul J. Butte, Isaac S. Kohane:
Comparing expression profiles of genes with similar promoter regions. Bioinform. 18(12): 1576-1584 (2002) - 2001
- [j4]Alberto Riva, Kenneth D. Mandl, Do Hoon Oh, Daniel J. Nigrin, Atul J. Butte, Peter Szolovits, Isaac S. Kohane:
The Personal Internetworked Notary and Guardian. Int. J. Medical Informatics 62(1): 27-40 (2001) - [j3]Ben Y. Reis, Atul J. Butte, Isaac S. Kohane:
Extracting Knowledge from Dynamics in Gene Expression. J. Biomed. Informatics 34(1): 15-27 (2001) - [j2]Ben Y. Reis, Atul J. Butte, Isaac S. Kohane:
Reply. J. Biomed. Informatics 34(4): 299-300 (2001) - [j1]Atul J. Butte, Ling Bao, Ben Y. Reis, Timothy W. Watkins, Isaac S. Kohane:
Comparing the Similarity of Time-Series Gene Expression Using Signal Processing Metrics. J. Biomed. Informatics 34(6): 396-405 (2001) - [c3]Atul J. Butte, J. Ye, G. Niederfellner, K. Rett, H. U. Häring, M. F. White, Isaac S. Kohane:
Determining Significant Fold Differences in Gene Expression Analysis. Pacific Symposium on Biocomputing 2001: 6-17 - 2000
- [c2]Atul J. Butte, David A. Weinstein, Isaac S. Kohane:
Enrolling patients into clinical trials faster using RealTime Recuiting. AMIA 2000
1990 – 1999
- 1999
- [c1]Atul J. Butte, Isaac S. Kohane:
Unsupervised knowledge discovery in medical databases using relevance networks. AMIA 1999
Coauthor Index
Joel Dudley
aka: Joel T. Dudley
aka: Joel T. Dudley
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Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-11-07 20:32 CET by the dblp team
all metadata released as open data under CC0 1.0 license
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since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
