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Charles Ofria

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affiliation: Michigan State University, East Lansing, MI, USA

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2020 – today

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2024
[c83]
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Martin Briesch, Ryan Boldi, Dominik Sobania, Alexander Lalejini, Thomas Helmuth, Franz Rothlauf, Charles Ofria, Lee Spector:
Improving Lexicase Selection with Informed Down-Sampling. GECCO Companion 2024: 25-26
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Stephan Winkler, Leonardo Trujillo, Charles Ofria, Ting Hu:
Genetic Programming Theory and Practice XX [GPTP 2023]. Springer 2024, ISBN 978-981-99-8412-1 [contents]
[i24]
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Matthew Andres Moreno, Santiago Rodriguez Papa, Charles Ofria:
Case Study of Novelty, Complexity, and Adaptation in a Multicellular System. CoRR abs/2405.07241 (2024)
2023
[j23]
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Matthew Andres Moreno, Alexander Lalejini, Charles Ofria:
Matchmaker, matchmaker, make me a match: geometric, variational, and evolutionary implications of criteria for tag affinity. Genet. Program. Evolvable Mach. 24(1): 4 (2023)
[c82]
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Matthew Andres Moreno, Alexander Lalejini, Charles Ofria:
Tag Affinity Criteria Influence Adaptive Evolution. GECCO Companion 2023: 35-36
[i23]
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  - journals/corr/abs-2301-01488
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Ryan Boldi, Martin Briesch, Dominik Sobania, Alexander Lalejini, Thomas Helmuth, Franz Rothlauf, Charles Ofria, Lee Spector:
Informed Down-Sampled Lexicase Selection: Identifying productive training cases for efficient problem solving. CoRR abs/2301.01488 (2023)
2022
[j22]
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Clifford Bohm, Sarah Albani, Charles Ofria, Acacia L. Ackles:
Using the Comparative Hybrid Approach to Disentangle the Role of Substrate Choice on the Evolution of Cognition. Artif. Life 28(4): 423-439 (2022)
[j21]
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Matthew Andres Moreno, Emily L. Dolson, Charles Ofria:
hstrat: a Python Package for phylogenetic inference on distributed digital evolution populations. J. Open Source Softw. 7(80): 4866 (2022)
[c81]
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Jose Guadalupe Hernandez, Alexander Lalejini, Charles Ofria:
Measuring the ability of lexicase selection to find obscure pathways to optimality. GECCO Companion 2022: 21-22
[c80]
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Alexander Lalejini, Matthew Andres Moreno, Charles Ofria:
Tag-based module regulation for genetic programming. GECCO Companion 2022: 25-26
[c79]
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Matthew Andres Moreno, Emily L. Dolson, Charles Ofria:
Hereditary stratigraphy: genome annotations to enable phylogenetic inference over distributed populations. GECCO Companion 2022: 65-66
[i22]
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  - journals/corr/abs-2204-13839
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Jose Guadalupe Hernandez, Alexander Lalejini, Charles Ofria:
A suite of diagnostic metrics for characterizing selection schemes. CoRR abs/2204.13839 (2022)
[i21]
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  - journals/corr/abs-2211-10897
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Matthew Andres Moreno, Charles Ofria:
Best-Effort Communication Improves Performance and Scales Robustly on Conventional Hardware. CoRR abs/2211.10897 (2022)
2021
[j20]
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Alexander Lalejini, Matthew Andres Moreno, Charles Ofria:
Tag-based regulation of modules in genetic programming improves context-dependent problem solving. Genet. Program. Evolvable Mach. 22(3): 325-355 (2021)
[c78]
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Matthew Andres Moreno, Santiago Rodriguez Papa, Charles Ofria:
Conduit: a C++ library for best-effort high performance computing. GECCO Companion 2021: 1795-1800
[c77]
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Jose Guadalupe Hernandez, Alexander Lalejini, Charles Ofria:
An Exploration of Exploration: Measuring the Ability of Lexicase Selection to Find Obscure Pathways to Optimality. GPTP 2021: 83-107
[c76]
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Sarah Albani, Acacia L. Ackles, Charles Ofria, Clifford Bohm:
The Comparative Hybrid Approach to Investigate Cognition across Substrates. ALIFE 2021: 110
[i20]
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  - journals/corr/abs-2104-10081
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Matthew Andres Moreno, Charles Ofria:
Exploring Evolved Multicellular Life Histories in a Open-Ended Digital Evolution System. CoRR abs/2104.10081 (2021)
[i19]
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  - journals/corr/abs-2105-10486
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Matthew Andres Moreno, Santiago Rodriguez Papa, Charles Ofria:
Conduit: A C++ Library for Best-effort High Performance Computing. CoRR abs/2105.10486 (2021)
[i18]
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  - journals/corr/abs-2107-09760
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Jose Guadalupe Hernandez, Alexander Lalejini, Charles Ofria:
An Exploration of Exploration: Measuring the ability of lexicase selection to find obscure pathways to optimality. CoRR abs/2107.09760 (2021)
[i17]
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  - journals/corr/abs-2108-00382
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Matthew Andres Moreno, Santiago Rodriguez Papa, Alexander Lalejini, Charles Ofria:
SignalGP-Lite: Event Driven Genetic Programming Library for Large-Scale Artificial Life Applications. CoRR abs/2108.00382 (2021)
[i16]
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  - journals/corr/abs-2108-04507
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Matthew Andres Moreno, Alexander Lalejini, Charles Ofria:
Matchmaker, Matchmaker, Make Me a Match: Geometric, Variational, and Evolutionary Implications of Criteria for Tag Affinity. CoRR abs/2108.04507 (2021)
2020
[j19]
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Emily L. Dolson, Alexander Lalejini, Steven Jorgensen, Charles Ofria:
Interpreting the Tape of Life: Ancestry-Based Analyses Provide Insights and Intuition about Evolutionary Dynamics. Artif. Life 26(1): 58-79 (2020)
[j18]
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  - journals/alife/LehmanCMAABBBBB20
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Joel Lehman, Jeff Clune, Dusan Misevic, Christoph Adami, Lee Altenberg, Julie Beaulieu, Peter J. Bentley, Samuel Bernard, Guillaume Beslon, David M. Bryson, Nick Cheney, Patryk Chrabaszcz, Antoine Cully, Stéphane Doncieux, Fred C. Dyer, Kai Olav Ellefsen, Robert Feldt, Stephan Fischer, Stephanie Forrest, Antoine Frénoy, Christian Gagné, Léni K. Le Goff, Laura M. Grabowski, Babak Hodjat, Frank Hutter, Laurent Keller, Carole Knibbe, Peter Krcah, Richard E. Lenski, Hod Lipson, Robert MacCurdy, Carlos Maestre, Risto Miikkulainen, Sara Mitri, David E. Moriarty, Jean-Baptiste Mouret, Anh Nguyen, Charles Ofria, Marc Parizeau, David P. Parsons, Robert T. Pennock, William F. Punch, Thomas S. Ray, Marc Schoenauer, Eric Schulte, Karl Sims, Kenneth O. Stanley, François Taddei, Danesh Tarapore, Simon Thibault, Richard A. Watson, Westley Weimer, Jason Yosinski:
The Surprising Creativity of Digital Evolution: A Collection of Anecdotes from the Evolutionary Computation and Artificial Life Research Communities. Artif. Life 26(2): 274-306 (2020)
[c75]
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  - conf/isalalife/AcklesFGO20
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Acacia L. Ackles, Austin J. Ferguson, Connor Grady, Charles Ofria:
Rank epistasis: A new model for analyzing epistatic interactions in the absence of quantifiable fitness interactions. ALIFE 2020: 160-162
[i15]
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  - journals/corr/abs-2012-09229
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Alexander Lalejini, Matthew Andres Moreno, Charles Ofria:
Tag-based Genetic Regulation for Genetic Programming. CoRR abs/2012.09229 (2020)

2010 – 2019

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2019
[j17]
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Emily L. Dolson, Anya E. Vostinar, Michael J. Wiser, Charles Ofria:
The MODES Toolbox: Measurements of Open-Ended Dynamics in Evolving Systems. Artif. Life 25(1): 50-73 (2019)
[j16]
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Matthew Andres Moreno, Charles Ofria:
Toward Open-Ended Fraternal Transitions in Individuality. Artif. Life 25(2): 117-133 (2019)
[j15]
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  - journals/ploscb/Canino-KoningWO19
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Rosangela Canino-Koning, Michael J. Wiser, Charles Ofria:
Fluctuating environments select for short-term phenotypic variation leading to long-term exploration. PLoS Comput. Biol. 15(4) (2019)
[c74]
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  - conf/gecco/LalejiniO19
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Alexander Lalejini, Charles Ofria:
Tag-accessed memory for genetic programming. GECCO (Companion) 2019: 346-347
[c73]
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  - conf/gecco/BohmLSO19
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Clifford Bohm, Alexander Lalejini, Jory Schossau, Charles Ofria:
MABE 2.0: an introduction to MABE and a road map for the future of MABE development. GECCO (Companion) 2019: 1349-1356
[c72]
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Jose Guadalupe Hernandez, Alexander Lalejini, Emily L. Dolson, Charles Ofria:
Random subsampling improves performance in lexicase selection. GECCO (Companion) 2019: 2028-2031
[c71]
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Austin J. Ferguson, Jose Guadalupe Hernandez, Daniel Junghans, Alexander Lalejini, Emily L. Dolson, Charles Ofria:
Characterizing the Effects of Random Subsampling on Lexicase Selection. GPTP 2019: 1-23
[c70]
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  - conf/isalalife/WiserCO19
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Michael J. Wiser, Rosangela Canino-Koning, Charles Ofria:
Horizontal Gene Transfer Leads to Increased Task Acquisition and Genomic Modularity in Digital Organisms. ALIFE 2019: 243-244
[c69]
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Clifford Bohm, Acacia L. Ackles, Charles Ofria, Arend Hintze:
On Sexual Selection in the Presence of Multiple Costly Displays. ALIFE 2019: 247-254
[c68]
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Alexander Lalejini, Emily L. Dolson, Clifford Bohm, Austin J. Ferguson, David P. Parsons, Penelope Faulkner Rainford, Paul Richmond, Charles Ofria:
Data Standards for Artificial Life Software. ALIFE 2019: 507-514
2018
[j14]
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Anya E. Vostinar, Charles Ofria:
Spatial Structure Can Decrease Symbiotic Cooperation. Artif. Life 24(4) (2018)
[c67]
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Anselmo C. Pontes, Charles Ofria:
Digital investigations on the evolution of prokaryote photosynthesis regulation: late-breaking abstract. GECCO (Companion) 2018: 65-66
[c66]
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Emily L. Dolson, Charles Ofria:
Ecological theory provides insights about evolutionary computation. GECCO (Companion) 2018: 105-106
[c65]
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Matthew Andres Moreno, Wolfgang Banzhaf, Charles Ofria:
Learning an evolvable genotype-phenotype mapping. GECCO 2018: 983-990
[c64]
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Alexander Lalejini, Charles Ofria:
Evolving event-driven programs with SignalGP. GECCO 2018: 1135-1142
[c63]
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Emily L. Dolson, Charles Ofria:
Visualizing the tape of life: exploring evolutionary history with virtual reality. GECCO (Companion) 2018: 1553-1559
[c62]
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Emily L. Dolson, Alexander Lalejini, Charles Ofria:
Exploring Genetic Programming Systems with MAP-Elites. GPTP 2018: 1-16
[c61]
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Alexander Lalejini, Charles Ofria:
What Else Is in an Evolved Name? Exploring Evolvable Specificity with SignalGP. GPTP 2018: 103-121
[c60]
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Emily L. Dolson, Alexander Lalejini, Steven Jorgensen, Charles Ofria:
Quantifying the Tape of Life: Ancestry-based Metrics Provide Insights and Intuition about Evolutionary Dynamics. ALIFE 2018: 75-82
[c59]
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Alexander Lalejini, Charles Ofria:
Evolving Reactive Agents with SignalGP. ALIFE 2018: 368-369
[c58]
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Emily L. Dolson, Charles Ofria:
Synthesizing Research on the Generation and Maintenance of Population Diversity. ALIFE 2018: 500-501
[c57]
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Anya E. Vostinar, Jacob Fenton, Chris Waters, Charles Ofria:
Signals in the Dark: What factors select for the evolution of cooperation controlled by quorum sensing? ALIFE 2018: 651-658
[i14]
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  - journals/corr/abs-1803-03453
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Joel Lehman, Jeff Clune, Dusan Misevic, Christoph Adami, Lee Altenberg, Julie Beaulieu, Peter J. Bentley, Samuel Bernard, Guillaume Beslon, David M. Bryson, Patryk Chrabaszcz, Nick Cheney, Antoine Cully, Stéphane Doncieux, Fred C. Dyer, Kai Olav Ellefsen, Robert Feldt, Stephan Fischer, Stephanie Forrest, Antoine Frénoy, Christian Gagné, Leni K. Le Goff, Laura M. Grabowski, Babak Hodjat, Frank Hutter, Laurent Keller, Carole Knibbe, Peter Krcah, Richard E. Lenski, Hod Lipson, Robert MacCurdy, Carlos Maestre, Risto Miikkulainen, Sara Mitri, David E. Moriarty, Jean-Baptiste Mouret, Anh Nguyen, Charles Ofria, Marc Parizeau, David P. Parsons, Robert T. Pennock, William F. Punch, Thomas S. Ray, Marc Schoenauer, Eric Schulte, Karl Sims, Kenneth O. Stanley, François Taddei, Danesh Tarapore, Simon Thibault, Westley Weimer, Richard A. Watson, Jason Yosinski:
The Surprising Creativity of Digital Evolution: A Collection of Anecdotes from the Evolutionary Computation and Artificial Life Research Communities. CoRR abs/1803.03453 (2018)
[i13]
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  - journals/corr/abs-1804-05445
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Alexander Lalejini, Charles Ofria:
Evolving Event-driven Programs with SignalGP. CoRR abs/1804.05445 (2018)
[i12]
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Emily L. Dolson, Alexander Lalejini, Steven Jorgensen, Charles Ofria:
Quantifying the tape of life: Ancestry-based metrics provide insights and intuition about evolutionary dynamics. PeerJ Prepr. 6: e26883 (2018)
[i11]
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Alexander Lalejini, Charles Ofria:
Evolving reactive agents with SignalGP. PeerJ Prepr. 6: e26921 (2018)
[i10]
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Alexander Lalejini, Charles Ofria:
What else is in an evolved name? Exploring evolvable specificity with SignalGP. PeerJ Prepr. 6: e27122 (2018)
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Emily L. Dolson, Alexander Lalejini, Charles Ofria:
Exploring genetic programming systems with MAP-Elites. PeerJ Prepr. 6: e27154 (2018)
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Emily L. Dolson, Anya E. Vostinar, Michael J. Wiser, Charles Ofria:
The MODES toolbox: Measurements of Open-ended Dynamics in Evolving Systems. PeerJ Prepr. 6: e27249 (2018)
[i7]
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Matthew Andres Moreno, Charles Ofria:
Toward open-ended fraternal transitions in individuality. PeerJ Prepr. 6: e27275 (2018)
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Emily L. Dolson, Wolfgang Banzhaf, Charles Ofria:
Ecological theory provides insights about evolutionary computation. PeerJ Prepr. 6: e27315 (2018)
2017
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Miguel A. Fortuna, Luis Zaman, Charles Ofria, Andreas Wagner:
The genotype-phenotype map of an evolving digital organism. PLoS Comput. Biol. 13(2) (2017)
[c56]
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Rosangela Canino-Koning, Jason Keagy, Charles Ofria:
Sexual selection promotes ecological speciation in digital organisms. ECAL 2017: 84-90
[c55]
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Emily L. Dolson, Charles Ofria:
Spatial resource heterogeneity creates local hotspots of evolutionary potential. ECAL 2017: 122-129
[c54]
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Alexander Lalejini, Michael J. Wiser, Charles Ofria:
Gene duplications drive the evolution of complex traits and regulation. ECAL 2017: 257-264
[c53]
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Joshua R. Nahum, Jevin West, Benjamin M. Althouse, Luis Zaman, Charles Ofria, Benjamin Kerr:
Improved adaptation in exogenously and endogenously changing environments. ECAL 2017: 306-313
[c52]
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Anselmo C. Pontes, Ian Whalen, Andrew C. Mitchell, Robert B. Mobley, Fred C. Dyer, Charles Ofria:
Investigations into the evolutionary origin of navigation and learning. ECAL 2017: 358-359
[c51]
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Michael J. Wiser, Luis Zaman, Brian D. Connelly, Charles Ofria:
Threshold for cooperation on irregular spatial networks. ECAL 2017: 593-599
[c50]
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Emily L. Dolson, Wolfgang Banzhaf, Charles Ofria:
Applying Ecological Principles to Genetic Programming. GPTP 2017: 73-88
2016
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Tim Taylor, Joshua Evan Auerbach, Josh C. Bongard, Jeff Clune, Simon J. Hickinbotham, Charles Ofria, Mizuki Oka, Sebastian Risi, Kenneth O. Stanley, Jason Yosinski:
WebAL Comes of Age: A Review of the First 21 Years of Artificial Life on the Web. Artif. Life 22(3): 364-407 (2016)
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Tim Taylor, Mark A. Bedau, Alastair Channon, David H. Ackley, Wolfgang Banzhaf, Guillaume Beslon, Emily L. Dolson, Tom Froese, Simon J. Hickinbotham, Takashi Ikegami, Barry McMullin, Norman H. Packard, Steen Rasmussen, Nathaniel Virgo, Eran Agmon, Edward Clark, Simon McGregor, Charles Ofria, Glen E. P. Ropella, Lee Spector, Kenneth O. Stanley, Adam Stanton, Christopher Steven Timperley, Anya E. Vostinar, Michael J. Wiser:
Open-Ended Evolution: Perspectives from the OEE Workshop in York. Artif. Life 22(3): 408-423 (2016)
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Charles Ofria, Michael J. Wiser, Rosangela Canino-Koning:
The Evolution of Evolvability: Changing Environments Promote Rapid Adaptation in Digital Organisms. ALIFE 2016: 268-275
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Charles Ofria, Alexander Lalejini:
The Evolutionary Origins of Phenotypic Plasticity. ALIFE 2016: 372-379
[c47]
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Charles Ofria, Laura M. Grabowski, Joshua R. Nahum, Riley Annis, Emily L. Dolson, Mikaela Leas:
The Prisoners Dilemma, Memory, and the Early Evolution of Intelligence. ALIFE 2016: 408-415
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Charles Ofria, Michael J. Wiser, Emily L. Dolson:
The Effects of Evolution and Spatial Structure on Diversity in Biological Reserves. ALIFE 2016: 434-441
[c45]
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Anya E. Vostinar, Luis Zaman, Charles Ofria:
What Factors Drive the Evolution of Mutualism? GECCO (Companion) 2016: 25-26
2015
[c44]
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Miguel A. Fortuna, Luis Zaman, Charles Ofria, Andreas Wagner:
Unraveling the genotype-phenotype map of evolving digital organisms. ECAL 2015: 310
2014
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Ritwik Biswas, David Bryson, Charles Ofria, Aaron Wagner:
Causes vs Benefits in the Evolution of Prey Grouping. ALIFE 2014: 641-648
[c42]
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Anya Elaine Johnson, Heather J. Goldsby, Sherri Goings, Charles Ofria:
The evolution of kin inclusivity levels. GECCO 2014: 177-184
[c41]
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David M. Bryson, Aaron P. Wagner, Charles Ofria:
There and back again: gene-processing hardware for the evolution and robotic deployment of robust navigation strategies. GECCO 2014: 689-696
2013
[j10]
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Miguel A. Fortuna, Luis Zaman, Aaron P. Wagner, Charles Ofria:
Evolving Digital Ecological Networks. PLoS Comput. Biol. 9(3) (2013)
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Mahmoud Taghizadeh, Kristopher K. Micinski, Subir Biswas, Charles Ofria, Eric Torng:
Distributed Cooperative Caching in Social Wireless Networks. IEEE Trans. Mob. Comput. 12(6): 1037-1053 (2013)
[c40]
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Jeff Clune, Dusan Misevic, Charles Ofria, Richard E. Lenski, Santiago F. Elena, Rafael Sanjuán:
Natural selection fails to optimize mutation rates for long-term adaptation on rugged fitness landscapes. GECCO (Companion) 2013: 25-26
[i5]
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David M. Bryson, Charles Ofria:
Understanding Evolutionary Potential in Virtual CPU Instruction Set Architectures. CoRR abs/1309.0719 (2013)
2012
[c39]
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David M. Bryson, Charles Ofria:
Digital Evolution Exhibits Surprising Robustness to Poor Design Decisions. ALIFE 2012
[c38]
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Sherri Goings, Heather Goldsby, Betty H. C. Cheng, Charles Ofria:
An ecology-based evolutionary algorithm to evolve solutions to complex problems. ALIFE 2012
[c37]
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Heather Goldsby, Neem Serra, Fred C. Dyer, Benjamin Kerr, Charles Ofria:
The Evolution of Temporal Polyethism. ALIFE 2012
[c36]
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Bess L. Walker, Charles Ofria:
Evolutionary Potential is Maximized at Intermediate Diversity Levels. ALIFE 2012
[c35]
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Luis Zaman, Charles Ofria, Richard E. Lenski:
Finger-painting Fitness Landscapes: An Interactive Tool for Exploring Complex Evolutionary Dynamics. ALIFE 2012
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Christoph Adami, David M. Bryson, Charles Ofria, Robert T. Pennock:
Proceedings of the Thirteenth International Conference on the Simulation and Synthesis of Living Systems, ALIFE 2012, East Lansing, Michigan, USA, July 19-22, 2012. MIT Press 2012, ISBN 9780262310505 [contents]
2011
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Jeff Clune, Kenneth O. Stanley, Robert T. Pennock, Charles Ofria:
On the Performance of Indirect Encoding Across the Continuum of Regularity. IEEE Trans. Evol. Comput. 15(3): 346-367 (2011)
[c34]
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Jeff Clune, Heather J. Goldsby, Charles Ofria, Robert T. Pennock:
Selective pressures for accurate altruism targeting: evidence from digital evolution for difficult-to-test aspects of inclusive fitness theory. ECAL 2011: 149-150
[c33]
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Jeff Clune, Dusan Misevic, Charles Ofria, Richard E. Lenski, Santiago F. Elena, Rafael Sanjuán:
Natural selection fails to optimize mutation rates for long-term adaptation on rugged fitness landscapes. ECAL 2011: 151-152
[c32]
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Laura M. Grabowski, David M. Bryson, Fred C. Dyer, Robert T. Pennock, Charles Ofria:
Clever creatures: Case studies of evolved digital organisms. ECAL 2011: 276-283
[c31]
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Dusan Misevic, Charles Ofria, Richard E. Lenski:
Digital sex: Causes and consequences. ECAL 2011: 532-533
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Luis Zaman, Suhas Devangam, Charles Ofria:
Rapid host-parasite coevolution drives the production and maintenance of diversity in digital organisms. GECCO 2011: 219-226
[c29]
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Brian D. Connelly, Luis Zaman, Philip K. McKinley, Charles Ofria:
Modeling the evolutionary dynamics of plasmids in spatial populations. GECCO 2011: 227-234
2010
[c28]
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Laura M. Grabowski, David M. Bryson, Fred C. Dyer, Charles Ofria, Robert T. Pennock:
Early Evolution of Memory Usage in Digital Organisms. ALIFE 2010: 224-231
[c27]
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Brian D. Connelly, Luis Zaman, Charles Ofria, Philip K. McKinley:
Social Structure and the Maintenance of Biodiversity. ALIFE 2010: 461-468
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Heather Goldsby, David B. Knoester, Charles Ofria:
Evolution of division of labor in genetically homogenous groups. GECCO 2010: 135-142
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Jeff Clune, Benjamin E. Beckmann, Philip K. McKinley, Charles Ofria:
Investigating whether hyperNEAT produces modular neural networks. GECCO 2010: 635-642
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Benjamin E. Beckmann, Jeff Clune, Charles Ofria:
Digital evolution with avida. GECCO (Companion) 2010: 2917-2926

2000 – 2009

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What is the meaning of the colors in the publication lists?

2009
[c23]
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Jeff Clune, Benjamin E. Beckmann, Charles Ofria, Robert T. Pennock:
Evolving coordinated quadruped gaits with the HyperNEAT generative encoding. IEEE Congress on Evolutionary Computation 2009: 2764-2771
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Heather Goldsby, David B. Knoester, Jeff Clune, Philip K. McKinley, Charles Ofria:
The Evolution of Division of Labor. ECAL (2) 2009: 10-18
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Jeff Clune, Benjamin E. Beckmann, Robert T. Pennock, Charles Ofria:
HybrID: A Hybridization of Indirect and Direct Encodings for Evolutionary Computation. ECAL (2) 2009: 134-141
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Heather Goldsby, Sherri Goings, Jeff Clune, Charles Ofria:
Problem decomposition using indirect reciprocity in evolved populations. GECCO 2009: 105-112
[c19]
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Jeff Clune, Charles Ofria, Robert T. Pennock:
The sensitivity of HyperNEAT to different geometric representations of a problem. GECCO 2009: 675-682
[c18]
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Wesley R. Elsberry, Laura M. Grabowski, Charles Ofria, Robert T. Pennock:
Cockroaches, drunkards, and climbers: Modeling the evolution of simple movement strategies using digital organisms. ALIFE 2009: 92-99
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Benjamin E. Beckmann, Laura M. Grabowski, Philip K. McKinley, Charles Ofria:
Applying digital evolution to the design of self-adaptive software. ALIFE 2009: 100-107
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Sherri Goings, Charles Ofria:
Ecological approaches to diversity maintenance in evolutionary algorithms. ALIFE 2009: 124-130
2008
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Charles Ofria, Wei Huang, Eric Torng:
On the Gradual Evolution of Complexity and the Sudden Emergence of Complex Features. Artif. Life 14(3): 255-263 (2008)
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Philip K. McKinley, Betty H. C. Cheng, Charles Ofria, David B. Knoester, Benjamin E. Beckmann, Heather Goldsby:
Harnessing Digital Evolution. Computer 41(1): 54-63 (2008)
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Jeff Clune, Dusan Misevic, Charles Ofria, Richard E. Lenski, Santiago F. Elena, Rafael Sanjuán:
Natural Selection Fails to Optimize Mutation Rates for Long-Term Adaptation on Rugged Fitness Landscapes. PLoS Comput. Biol. 4(9) (2008)
[c15]
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Benjamin E. Beckmann, Philip K. McKinley, Charles Ofria:
Selection for group-level efficiency leads to self-regulation of population size. GECCO 2008: 185-192
[c14]
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Laura M. Grabowski, Wesley R. Elsberry, Charles Ofria, Robert T. Pennock:
On the evolution of motility and intelligent tactic response. GECCO 2008: 209-216
[c13]
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David B. Knoester, Philip K. McKinley, Charles Ofria:
Cooperative network construction using digital germlines. GECCO 2008: 217-224
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Jeff Clune, Charles Ofria, Robert T. Pennock:
How generative encodings fare on less regular problems. GECCO 2008: 867-868
[c11]
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Heather Goldsby, Betty H. C. Cheng, Philip K. McKinley, David B. Knoester, Charles Ofria:
Digital Evolution of Behavioral Models for Autonomic Systems. ICAC 2008: 87-96
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Benjamin E. Beckmann, Laura M. Grabowski, Philip K. McKinley, Charles Ofria:
Autonomic Software Development Methodology Based on Darwinian Evolution. ICAC 2008: 203-204
[c9]
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Jeff Clune, Charles Ofria, Robert T. Pennock:
How a Generative Encoding Fares as Problem-Regularity Decreases. PPSN 2008: 358-367
2007
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Jeff Clune, Charles Ofria, Robert T. Pennock:
Investigating the Emergence of Phenotypic Plasticity in Evolving Digital Organisms. ECAL 2007: 74-83
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Benjamin E. Beckmann, Philip K. McKinley, Charles Ofria:
Evolution of an Adaptive Sleep Response in Digital Organisms. ECAL 2007: 233-242
[c6]
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David B. Knoester, Philip K. McKinley, Benjamin E. Beckmann, Charles Ofria:
Directed Evolution of Communication and Cooperation in Digital Organisms. ECAL 2007: 384-394
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David B. Knoester, Philip K. McKinley, Charles Ofria:
Using group selection to evolve leadership in populations of self-replicating digital organisms. GECCO 2007: 293-300
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Heather Goldsby, David B. Knoester, Betty H. C. Cheng, Philip K. McKinley, Charles Ofria:
Digitally Evolving Models for Dynamically Adaptive Systems. SEAMS 2007: 13
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Benjamin E. Beckmann, Philip K. McKinley, David B. Knoester, Charles Ofria:
Evolution of Cooperative Information Gathering in Self-Replicating Digital Organisms. SASO 2007: 65-76
2004
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George I. Hagstrom, Dehua H. Hang, Charles Ofria, Eric Torng:
Using Avida to Test the Effects of Natural Selection on Phylogenetic Reconstruction Methods. Artif. Life 10(2): 157-166 (2004)
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Charles Ofria, Claus O. Wilke:
Avida: A Software Platform for Research in Computational Evolutionary Biology. Artif. Life 10(2): 191-229 (2004)
2003
[c2]
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Dehua H. Hang, Charles Ofria, Thomas M. Schmidt, Eric Torng:
The Effect of Natural Selection on Phylogeny Reconstruction Algorithms. GECCO 2003: 13-24
[i4]
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Charles Ofria, Christoph Adami, Travis C. Collier:
Selective pressures on genomes in molecular evolution. CoRR quant-ph/0301075 (2003)
2002
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Charles Ofria, Christoph Adami, Travis C. Collier:
Design of evolvable computer languages. IEEE Trans. Evol. Comput. 6(4): 420-424 (2002)
2000
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Christoph Adami, Charles Ofria, Travis C. Collier:
Evolution of biological complexity. Proc. Natl. Acad. Sci. USA 97(9): 4463-4468 (2000)
[i3]
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Charles Ofria, Christoph Adami, Travis C. Collier, Grace K. Hsu:
Evolution of differentiated expression patterns in digital organisms. CoRR physics/0002054 (2000)
[i2]
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Christoph Adami, Charles Ofria, Travis C. Collier:
Evolution of Biological Complexity. CoRR physics/0005074 (2000)

1990 – 1999

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1999
[c1]
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Charles Ofria, Christoph Adami, Travis C. Collier, Grace K. Hsu:
Evolution of Differentiated Expression Patterns in Digital Organisms. ECAL 1999: 129-138
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Charles Ofria, Christoph Adami:
Evolution of genetic organization in digital organisms. CoRR adap-org/9903003 (1999)

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