Promoter-Proximal Chromatin Domain Insulator Protein BEAF Mediates Local and Long-Range Communication with a Transcription Factor and Directly Activates a Housekeeping Promoter in Drosophila (Q90370364)

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scientific article published on 16 March 2020

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English	Promoter-Proximal Chromatin Domain Insulator Protein BEAF Mediates Local and Long-Range Communication with a Transcription Factor and Directly Activates a Housekeeping Promoter in Drosophila	scientific article published on 16 March 2020

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32179582%20AND%20SRC:MED&resulttype=core&format=json

13 April 2020

Promoter-Proximal Chromatin Domain Insulator Protein BEAF Mediates Local and Long-Range Communication with a Transcription Factor and Directly Activates a Housekeeping Promoter in Drosophila (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32179582%20AND%20SRC:MED&resulttype=core&format=json

13 April 2020

author name string

Yuankai Dong

1

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13 April 2020

S V Satya Prakash Avva

2

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13 April 2020

Mukesh Maharjan

3

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13 April 2020

Janice Jacobi

4

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13 April 2020

Craig M Hart

5

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13 April 2020

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16 March 2020

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13 April 2020

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13 April 2020

Transcription factor loading on the MMTV promoter: a bimodal mechanism for promoter activation

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Single amino acid exchanges in separate domains of the Drosophila serendipity delta zinc finger protein cause embryonic and sex biased lethality

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A group of scs elements function as domain boundaries in an enhancer-blocking assay

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A position-effect assay for boundaries of higher order chromosomal domains

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic targets of the serendipity beta and delta zinc finger proteins and their respective DNA recognition sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The closely related Drosophila sry beta and sry delta zinc finger proteins show differential embryonic expression and distinct patterns of binding sites on polytene chromosomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Use of T7 RNA polymerase to direct expression of cloned genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcriptional activation and repression by Ultrabithorax proteins in cultured Drosophila cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular characterization of the zerknüllt region of the Antennapedia gene complex in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Autoregulation of a Drosophila homeotic selector gene.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Minichromosome assembly of non-integrated plasmid DNA transfected into mammalian cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Micrococcal nuclease digestion of nuclei reveals extended nucleosome ladders having anomalous DNA lengths for chromatin assembled on non-replicating plasmids in transfected cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutations in aurora prevent centrosome separation leading to the formation of monopolar spindles

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Visualization of chromosomal domains with boundary element-associated factor BEAF-32.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ectopic expression and function of the Antp and Scr homeotic genes: the N terminus of the homeodomain is critical to functional specificity.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Direct control of transcription of the Drosophila morphogen bicoid by the serendipity delta zinc finger protein, as revealed by in vivo analysis of a finger swap

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Novel 8-base pair sequence (Drosophila DNA replication-related element) and specific binding factor involved in the expression of Drosophila genes for DNA polymerase alpha and proliferating cell nuclear antigen

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The scs' boundary element: characterization of boundary element-associated factors

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Two types of zinc fingers are required for dimerization of the serendipity delta transcriptional activator

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A homeodomain point mutation of the Drosophila proboscipedia protein provokes eye loss independently of homeotic function.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of a class of chromatin boundary elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcriptional control of Drosophila bicoid by Serendipity delta: cooperative binding sites, promoter context, and co-evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The protein CTCF is required for the enhancer blocking activity of vertebrate insulators

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for an antagonistic relationship between the boundary element-associated factor BEAF and the transcription factor DREF.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The molecular motor dynein is involved in targeting swallow and bicoid RNA to the anterior pole of Drosophila oocytes

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of a multicopy chromatin boundary element at the borders of silenced chromosomal domains.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein:protein interactions and the pairing of boundary elements in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spatial organization of gene expression: the active chromatin hub.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Screens for piwi suppressors in Drosophila identify dosage-dependent regulators of germline stem cell division.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A myocardin-related transcription factor regulates activity of serum response factor in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enhancer choice in cis and in trans in Drosophila melanogaster: role of the promoter

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein production by auto-induction in high density shaking cultures

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Drosophila boundary element-associated factors BEAF-32A and BEAF-32B affect chromatin structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A genetic screen supports a broad role for the Drosophila insulator proteins BEAF-32A and BEAF-32B in maintaining patterns of gene expression.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of BEAF mutations isolated by homologous recombination in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Drosophila gypsy insulator and yellow enhancers regulate activity of yellow promoter through the same regulatory element.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NELF and GAGA factor are linked to promoter-proximal pausing at many genes in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

BEAF regulates cell-cycle genes through the controlled deposition of H3K9 methylation marks into its conserved dual-core binding sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide mapping of boundary element-associated factor (BEAF) binding sites in Drosophila melanogaster links BEAF to transcription

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription factors mediate long-range enhancer-promoter interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A comprehensive map of insulator elements for the Drosophila genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A BEAF dependent chromatin domain boundary separates myoglianin and eyeless genes of Drosophila melanogaster

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Visualization of protein interactions in living Drosophila embryos by the bimolecular fluorescence complementation assay

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Chriz-Z4 complex recruits JIL-1 to polytene chromosomes, a requirement for interband-specific phosphorylation of H3S10.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The NSL complex regulates housekeeping genes in Drosophila.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nature and function of insulator protein binding sites in the Drosophila genome.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Global analysis of target genes of 21 members of the ZAD transcription factor family in Drosophila melanogaster

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A high-resolution map of the three-dimensional chromatin interactome in human cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromatin immunoprecipitation indirect peaks highlight long-range interactions of insulator proteins and Pol II pausing.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Insulators recruit histone methyltransferase dMes4 to regulate chromatin of flanking genes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TRF2, but not TBP, mediates the transcription of ribosomal protein genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Insulator function and topological domain border strength scale with architectural protein occupancy

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromatin Insulator Factors Involved in Long-Range DNA Interactions and Their Role in the Folding of the Drosophila Genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription factor networks in Drosophila melanogaster

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Insulators and domains of gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Breaking TADs: How Alterations of Chromatin Domains Result in Disease

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of the Drosophila BEAF-32A and BEAF-32B Insulator Proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

FlyBase at 25: looking to the future.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcriptomic data from panarthropods shed new light on the evolution of insulator binding proteins in insects : Insect insulator proteins.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide assessment of sequence-intrinsic enhancer responsiveness at single-base-pair resolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Boundaries of loop domains (insulators): Determinants of chromosome form and function in multicellular eukaryotes

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DREF plays multiple roles during Drosophila development

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionarily Conserved Principles Predict 3D Chromatin Organization

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

YY1 Is a Structural Regulator of Enhancer-Promoter Loops

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

4C-seq characterization of Drosophila BEAF binding regions provides evidence for highly variable long-distance interactions between active chromatin

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Developmental enhancers and chromosome topology

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Comprehensive Drosophila melanogaster Transcription Factor Interactome

1 reference

https://pubmed.ncbi.nlm.nih.gov/32179582

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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