Genomic choice of codons in 16 microbial species. (Q52968376)

10 May 2018

title

Genomic choice of codons in 16 microbial species. (English)

1 reference

10 May 2018

author name string

Mougel F

1 reference

10 May 2018

Manichanh C

1 reference

10 May 2018

Duchateau N'guyen G

1 reference

10 May 2018

Termier M

1 reference

10 May 2018

publication date

1 December 2004

1 reference

10 May 2018

Journal of Biomolecular Structure and Dynamics

published in

1 reference

10 May 2018

volume

1 reference

10 May 2018

issue

1 reference

10 May 2018

page(s)

315-329

1 reference

10 May 2018

Viral, prokaryote and eukaryote genes contrasted by mRNA sequence indexes

cites work

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Codon frequencies in 119 individual genes confirm consistent choices of degenerate bases according to genome type.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Codon catalog usage is a genome strategy modulated for gene expressivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Evolution of codon usage bias in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

The 'effective number of codons' used in a gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Codon replacement in the PGK1 gene of Saccharomyces cerevisiae: experimental approach to study the role of biased codon usage in gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Codon preference and its use in identifying protein coding regions in long DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Complete DNA sequence of yeast chromosome XI.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Discrimination between fortuitous and biologically constrained open reading frames in DNA sequences of Saccharomyces cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Switches in species-specific codon preferences: the influence of mutation biases

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Codon usage in the G+C-rich Streptomyces genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Accounting for background nucleotide composition when measuring codon usage bias.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

A genomic perspective on protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

The COG database: new developments in phylogenetic classification of proteins from complete genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Gene expression and molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

The role of context-dependent mutations in generating compositional and codon usage bias in grass chloroplast DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Codon usage between genomes is constrained by genome-wide mutational processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Oligonucleotide bias in Bacillus subtilis: general trends and taxonomic comparisons

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Selective charging of tRNA isoacceptors explains patterns of codon usage.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

Why Are Translationally Sub-Optimal Synonymous Codons Used in Escherichia coli?

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2004.10507003

10.1080/07391102.2004.10507003

21 January 2018

Identifiers

DOI

1 reference

10 May 2018

release_luxyqiqu75gpblh3pde3yk46hi

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/luxyqiqu75gpblh3pde3yk46hi

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

10 May 2018