Possum-A Framework for Three-Dimensional Reconstruction of Brain Images from Serial Sections (Q40189312)

18 September 2017

Possum-A Framework for Three-Dimensional Reconstruction of Brain Images from Serial Sections (English)

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18 September 2017

1 reference

Piotr Majka

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Daniel K Wójcik

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21 December 2015

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18 September 2017

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18 September 2017

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18 September 2017

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18 September 2017

265-278

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PMC publication ID

4896981

Creative Commons Attribution 4.0 International

18 September 2017

start time

21 December 2015

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April 2022 Public Data File from Crossref

copyrighted

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cites work

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22 September 2017

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22 September 2017

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22 September 2017

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22 September 2017

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22 September 2017

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Waxholm space: an image-based reference for coordinating mouse brain research.

22 September 2017

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Large Deformation Diffeomorphic Metric Mapping Registration of Reconstructed 3D Histological Section Images and in vivo MR Images.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

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22 September 2017

1 reference

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A 3D multi-modal and multi-dimensional digital brain model as a framework for data sharing

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

The Neuroterrain 3D Mouse Brain Atlas

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

The basic nonuniformity of the cerebral cortex

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

Analyzing in situ gene expression in the mouse brain with image registration, feature extraction and block clustering

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

A pyramid approach to subpixel registration based on intensity

22 September 2017

1 reference

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Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

Morphometric analysis of the C57BL/6J mouse brain.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

High-throughput morphologic phenotyping of the mouse brain with magnetic resonance histology

22 September 2017

1 reference

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22 September 2017

1 reference

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22 September 2017

1 reference

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A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data

22 September 2017

1 reference

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22 September 2017

1 reference

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The creation of a brain atlas for image guided neurosurgery using serial histological data.

22 September 2017

1 reference

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A three-dimensional digital atlas database of the adult C57BL/6J mouse brain by magnetic resonance microscopy.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

A multimodal, multidimensional atlas of the C57BL/6J mouse brain

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

Accuracy of image registration between MRI and light microscopy in the ex vivo brain.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

MRI-guided volume reconstruction of mouse brain from histological sections

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

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20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

Connections of the dorsomedial visual area: pathways for early integration of dorsal and ventral streams in extrastriate cortex.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

Use of magnetic resonance imaging for anatomical phenotyping of the R6/2 mouse model of Huntington's disease.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

Geometrical regularization of displacement fields for histological image registration.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in-vivo MRI for whole baboon brain

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

3D volume reconstruction of a mouse brain from histological sections using warp filtering

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

Morphomolecular neuronal phenotypes in the neocortex reflect phylogenetic relationships among certain mammalian orders

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

Correcting spatial distortion in histological images.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

Piecewise affine registration of biological images for volume reconstruction.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

Fusion of autoradiographs with an MR volume using 2-D and 3-D linear transformations

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

A robust statistics-based global energy function for the alignment of serially acquired autoradiographic sections

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

A new method for reliable and efficient reconstruction of 3-dimensional images from autoradiographs of brain sections

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4896981

10.1007/S12021-015-9286-1

20 August 2018

Identifiers

DOI

1 reference

18 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

4896981

18 September 2017

PubMed publication ID

26687079

1 reference

PMC publication ID

4896981