TFIIH: when transcription met DNA repair. (Q38008913)

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1 February 2020

title

TFIIH: when transcription met DNA repair (English)

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transcription factor TFIIH holo complex

1 February 2020

main subject

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core TFIIH complex portion of holo TFIIH complex

GO:0005675

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transcription factor TFIIK complex

GO:0000438

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transcription factor TFIIH core complex

GO:0070985

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core TFIIH complex portion of NEF3 complex

GO:0000439

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22572993%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

Jean-Marc Egly

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1 February 2020

publication date

10 May 2012

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Nature Reviews Molecular Cell Biology

1 February 2020

published in

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1 February 2020

volume

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1 February 2020

issue

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1 February 2020

page(s)

343-354

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DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall.

1 February 2020

cites work

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Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene

31 March 2020

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DNA repair helicase: a component of BTF2 (TFIIH) basic transcription factor

31 March 2020

2 references

31 March 2020

12 December 2020

Dual roles of a multiprotein complex from S. cerevisiae in transcription and DNA repair

1 reference

TAF12 recruits Gadd45a and the nucleotide excision repair complex to the promoter of rRNA genes leading to active DNA demethylation

31 March 2020

1 reference

NER factors are recruited to active promoters and facilitate chromatin modification for transcription in the absence of exogenous genotoxic attack.

31 March 2020

1 reference

An RNA polymerase II transcription factor has an associated DNA-dependent ATPase (dATPase) activity strongly stimulated by the TATA region of promoters

31 March 2020

1 reference

The ERCC2/DNA repair protein is associated with the class II BTF2/TFIIH transcription factor

31 March 2020

1 reference

ERCC2: cDNA cloning and molecular characterization of a human nucleotide excision repair gene with high homology to yeast RAD3

31 March 2020

1 reference

Structure and expression of the human XPBC/ERCC-3 gene involved in DNA repair disorders xeroderma pigmentosum and Cockayne's syndrome

31 March 2020

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CTD kinase associated with yeast RNA polymerase II initiation factor b.

31 March 2020

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The MO15 cell cycle kinase is associated with the TFIIH transcription-DNA repair factor

31 March 2020

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A novel cyclin associates with MO15/CDK7 to form the CDK-activating kinase

31 March 2020

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A cyclin associated with the CDK-activating kinase MO15

31 March 2020

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MAT1, cdk7 and cyclin H form a kinase complex which is UV light-sensitive upon association with TFIIH

31 March 2020

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Substrate specificity of the cdk-activating kinase (CAK) is altered upon association with TFIIH

31 March 2020

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Cdk7 is essential for mitosis and for in vivo Cdk-activating kinase activity.

31 March 2020

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Is Cdk7/cyclin H/MAT1 the genuine cdk activating kinase in cycling Xenopus egg extracts?

31 March 2020

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RNA antisense abrogation of MAT1 induces G1 phase arrest and triggers apoptosis in aortic smooth muscle cells

31 March 2020

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Both p16 and p21 families of cyclin-dependent kinase (CDK) inhibitors block the phosphorylation of cyclin-dependent kinases by the CDK-activating kinase

31 March 2020

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The MO15 gene encodes the catalytic subunit of a protein kinase that activates cdc2 and other cyclin-dependent kinases (CDKs) through phosphorylation of Thr161 and its homologues

31 March 2020

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Activation of cyclin-dependent kinase 4 (cdk4) by mouse MO15-associated kinase

31 March 2020

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31 March 2020

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Secrets of a double agent: CDK7 in cell-cycle control and transcription

31 March 2020

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MMXD, a TFIIH-independent XPD-MMS19 protein complex involved in chromosome segregation

31 March 2020

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Mechanisms of DNA excision repair

31 March 2020

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Mammalian DNA nucleotide excision repair reconstituted with purified protein components.

31 March 2020

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Sequential assembly of the nucleotide excision repair factors in vivo

31 March 2020

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Transcription-coupled DNA repair: two decades of progress and surprises

31 March 2020

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Dynamic two-stage mechanism of versatile DNA damage recognition by xeroderma pigmentosum group C protein

31 March 2020

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Biochemical and structural domain analysis of xeroderma pigmentosum complementation group C protein

31 March 2020

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Recognition of DNA damage by the Rad4 nucleotide excision repair protein

31 March 2020

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A multistep damage recognition mechanism for global genomic nucleotide excision repair

31 March 2020

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The human DNA repair factor XPC-HR23B distinguishes stereoisomeric benzo[a]pyrenyl-DNA lesions

31 March 2020

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A 127 kDa component of a UV-damaged DNA-binding complex, which is defective in some xeroderma pigmentosum group E patients, is homologous to a slime mold protein

31 March 2020

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The DDB2 nucleotide excision repair gene product p48 enhances global genomic repair in p53 deficient human fibroblasts

31 March 2020

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UV radiation-induced XPC translocation within chromatin is mediated by damaged-DNA binding protein, DDB2.

31 March 2020

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Regulation of nucleotide excision repair by UV-DDB: prioritization of damage recognition to internucleosomal DNA

31 March 2020

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Centrosome protein centrin 2/caltractin 1 is part of the xeroderma pigmentosum group C complex that initiates global genome nucleotide excision repair

31 March 2020

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Roles of Rad23 protein in yeast nucleotide excision repair

31 March 2020

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Ordered conformational changes in damaged DNA induced by nucleotide excision repair factors

31 March 2020

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Dissection of the molecular defects caused by pathogenic mutations in the DNA repair factor XPC.

31 March 2020

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DNA repair. Engagement with transcription

31 March 2020

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DNA damage recognition during nucleotide excision repair in mammalian cells

31 March 2020

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Mutations in the XPD helicase gene result in XP and TTD phenotypes, preventing interaction between XPD and the p44 subunit of TFIIH

31 March 2020

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Basal transcription defect discriminates between xeroderma pigmentosum and trichothiodystrophy in XPD patients

31 March 2020

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Reconstitution of the transcription factor TFIIH: assignment of functions for the three enzymatic subunits, XPB, XPD, and cdk7

31 March 2020

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Molecular insights into the recruitment of TFIIH to sites of DNA damage

31 March 2020

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Conserved XPB core structure and motifs for DNA unwinding: implications for pathway selection of transcription or excision repair

31 March 2020

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Distinct roles for the XPB/p52 and XPD/p44 subcomplexes of TFIIH in damaged DNA opening during nucleotide excision repair

31 March 2020

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DNA repair and transcriptional deficiencies caused by mutations in the Drosophila p52 subunit of TFIIH generate developmental defects and chromosome fragility.

31 March 2020

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XPD helicase structures and activities: insights into the cancer and aging phenotypes from XPD mutations

31 March 2020

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Structure of the DNA Repair Helicase XPD

31 March 2020

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Crystal Structure of the FeS Cluster–Containing Nucleotide Excision Repair Helicase XPD

31 March 2020

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Strand- and site-specific DNA lesion demarcation by the xeroderma pigmentosum group D helicase

31 March 2020

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Crystal structure of UvrB, a DNA helicase adapted for nucleotide excision repair

31 March 2020

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The β-Hairpin Motif of UvrB Is Essential for DNA Binding, Damage Processing, and UvrC-mediated Incisions

31 March 2020

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Recognition and repair of the cyclobutane thymine dimer, a major cause of skin cancers, by the human excision nuclease

31 March 2020

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Trichothiodystrophy: from basic mechanisms to clinical implications

31 March 2020

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Identification of TFB5, a new component of general transcription and DNA repair factor IIH.

31 March 2020

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A new, tenth subunit of TFIIH is responsible for the DNA repair syndrome trichothiodystrophy group A

31 March 2020

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p8/TTD-A as a repair-specific TFIIH subunit

31 March 2020

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Sublimiting concentration of TFIIH transcription/DNA repair factor causes TTD-A trichothiodystrophy disorder

31 March 2020

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Solution structure and self-association properties of the p8 TFIIH subunit responsible for trichothiodystrophy

31 March 2020

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Structural basis for group A trichothiodystrophy

31 March 2020

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Formation of a ternary complex by human XPA, ERCC1, and ERCC4(XPF) excision repair proteins

31 March 2020

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Localization of xeroderma pigmentosum group A protein and replication protein A on damaged DNA in nucleotide excision repair

31 March 2020

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Solution structure of the DNA- and RPA-binding domain of the human repair factor XPA

31 March 2020

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Sequential binding of DNA repair proteins RPA and ERCC1 to XPA in vitro

31 March 2020

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Mechanism of open complex and dual incision formation by human nucleotide excision repair factors

31 March 2020

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Nucleotide excision repair driven by the dissociation of CAK from TFIIH.

31 March 2020

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Different forms of TFIIH for transcription and DNA repair: holo-TFIIH and a nucleotide excision repairosome

31 March 2020

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A yeast four-hybrid system identifies Cdk-activating kinase as a regulator of the XPD helicase, a subunit of transcription factor IIH

31 March 2020

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SIRT1 Regulates UV-Induced DNA Repair through Deacetylating XPA

31 March 2020

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Two-step recognition of DNA damage for mammalian nucleotide excision repair: Directional binding of the XPC complex and DNA strand scanning

31 March 2020

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The xeroderma pigmentosum pathway: decision tree analysis of DNA quality

31 March 2020

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A mathematical model for human nucleotide excision repair: damage recognition by random order assembly and kinetic proofreading

31 March 2020

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Sequential recruitment of the repair factors during NER: the role of XPG in initiating the resynthesis step.

31 March 2020

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Coordination of dual incision and repair synthesis in human nucleotide excision repair

31 March 2020

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Analysis of incision sites produced by human cell extracts and purified proteins during nucleotide excision repair of a 1,3-intrastrand d(GpTpG)-cisplatin adduct

31 March 2020

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Molecular mechanisms of mammalian global genome nucleotide excision repair.

31 March 2020

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DNA polymerases and repair synthesis in NER in human cells

31 March 2020

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Three DNA polymerases, recruited by different mechanisms, carry out NER repair synthesis in human cells

31 March 2020

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Sealing of chromosomal DNA nicks during nucleotide excision repair requires XRCC1 and DNA ligase III alpha in a cell-cycle-specific manner

31 March 2020

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Chromatin assembly coupled to DNA repair: a new role for chromatin assembly factor I.

31 March 2020

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New Histone Incorporation Marks Sites of UV Repair in Human Cells

31 March 2020

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XPG stabilizes TFIIH, allowing transactivation of nuclear receptors: implications for Cockayne syndrome in XP-G/CS patients

31 March 2020

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Phosphorylation of XPB helicase regulates TFIIH nucleotide excision repair activity

31 March 2020

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Rapid switching of TFIIH between RNA polymerase I and II transcription and DNA repair in vivo.

31 March 2020

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TFIIH plays an essential role in RNA polymerase I transcription

31 March 2020

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TFIIH is an elongation factor of RNA polymerase I.

31 March 2020

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Pol II and its associated epigenetic marks are present at Pol III-transcribed noncoding RNA genes.

31 March 2020

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Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors

31 March 2020

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Eukaryotic transcriptional control

31 March 2020

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Recent highlights of RNA-polymerase-II-mediated transcription

31 March 2020

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RSC, an essential, abundant chromatin-remodeling complex

31 March 2020

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A mammalian SRB protein associated with an RNA polymerase II holoenzyme

31 March 2020

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A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II.

31 March 2020

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A mammalian RNA polymerase II holoenzyme containing all components required for promoter-specific transcription initiation

31 March 2020

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Common themes in assembly and function of eukaryotic transcription complexes

31 March 2020

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Mechanism of promoter melting by the xeroderma pigmentosum complementation group B helicase of transcription factor IIH revealed by protein-DNA photo-cross-linking

31 March 2020

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Mutations in XPB and XPD helicases found in xeroderma pigmentosum patients impair the transcription function of TFIIH.

31 March 2020

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A Role for the TFIIH XPB DNA Helicase in Promoter Escape by RNA Polymerase II

31 March 2020

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A Role for ATP and TFIIH in Activation of the RNA Polymerase II Preinitiation Complex Prior to Transcription Initiation

31 March 2020

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A role for TFIIH in controlling the activity of early RNA polymerase II elongation complexes

31 March 2020

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Defective interplay of activators and repressors with TFIH in xeroderma pigmentosum

31 March 2020

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Human general transcription factor IIH phosphorylates the C-terminal domain of RNA polymerase II

31 March 2020

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Relationship of CDK-activating kinase and RNA polymerase II CTD kinase TFIIH/TFIIK

31 March 2020

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Cdk-activating kinase complex is a component of human transcription factor TFIIH

31 March 2020

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Regulated phosphorylation of the RNA polymerase II C-terminal domain (CTD).

31 March 2020

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Progression through the RNA polymerase II CTD cycle

31 March 2020

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Phosphorylation of C-terminal domain of RNA polymerase II is not required in basal transcription

31 March 2020

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mRNA capping enzyme is recruited to the transcription complex by phosphorylation of the RNA polymerase II carboxy-terminal domain

31 March 2020

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Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription

31 March 2020

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Requirement of TFIIH kinase subunit Mat1 for RNA Pol II C-terminal domain Ser5 phosphorylation, transcription and mRNA turnover

31 March 2020

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TFIIH is negatively regulated by cdk8-containing mediator complexes

31 March 2020

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B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes

31 March 2020

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Analysis of U1 small nuclear RNA interaction with cyclin H.

31 March 2020

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TFIIH kinase places bivalent marks on the carboxy-terminal domain of RNA polymerase II.

31 March 2020

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TFIIH-associated Cdk7 kinase functions in phosphorylation of C-terminal domain Ser7 residues, promoter-proximal pausing, and termination by RNA polymerase II

31 March 2020

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Phosphorylation of the yeast Rpb1 C-terminal domain at serines 2, 5, and 7.

31 March 2020

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Serine-7 of the RNA polymerase II CTD is specifically required for snRNA gene expression

31 March 2020

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Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain

31 March 2020

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Tat modifies the activity of CDK9 to phosphorylate serine 5 of the RNA polymerase II carboxyl-terminal domain during human immunodeficiency virus type 1 transcription

31 March 2020

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Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3' end processing

31 March 2020

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Phosphorylation of the carboxy-terminal repeat domain in RNA polymerase II by cyclin-dependent kinases is sufficient to inhibit transcription

31 March 2020

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Temporal regulation of RNA polymerase II by Srb10 and Kin28 cyclin-dependent kinases

31 March 2020

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Transcription-independent phosphorylation of the RNA polymerase II C-terminal domain (CTD) involves ERK kinases (MEK1/2).

31 March 2020

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Ku autoantigen is the regulatory component of a template-associated protein kinase that phosphorylates RNA polymerase II

31 March 2020

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Characterization of the Residues Phosphorylated in Vitro by Different C-terminal Domain Kinases

31 March 2020

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Purification and characterization of an RNA polymerase II phosphatase from yeast

31 March 2020

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TFIIF-associating carboxyl-terminal domain phosphatase dephosphorylates phosphoserines 2 and 5 of RNA polymerase II.

31 March 2020

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Rtr1 is a CTD phosphatase that regulates RNA polymerase II during the transition from serine 5 to serine 2 phosphorylation

31 March 2020

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Phosphorylation and functions of the RNA polymerase II CTD

31 March 2020

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Transcription. Seven ups the code

31 March 2020

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Cracking the RNA polymerase II CTD code

31 March 2020

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The CDK7-cycH-p36 complex of transcription factor IIH phosphorylates p53, enhancing its sequence-specific DNA binding activity in vitro

31 March 2020

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Binding of basal transcription factor TFIIH to the acidic activation domains of VP16 and p53

31 March 2020

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The 62- and 80-kDa subunits of transcription factor IIH mediate the interaction with Epstein-Barr virus nuclear protein 2

31 March 2020

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Hepatitis B virus transactivator protein, HBx, associates with the components of TFIIH and stimulates the DNA helicase activity of TFIIH

31 March 2020

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The FBP interacting repressor targets TFIIH to inhibit activated transcription

31 March 2020

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Hfp inhibits Drosophila myc transcription and cell growth in a TFIIH/Hay-dependent manner

31 March 2020

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The phosphorylation of the androgen receptor by TFIIH directs the ubiquitin/proteasome process

31 March 2020

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TFIIH interacts with the retinoic acid receptor gamma and phosphorylates its AF-1-activating domain through cdk7

31 March 2020

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Stimulation of RARα Activation Function AF-1 through Binding to the General Transcription Factor TFIIH and Phosphorylation by CDK7

31 March 2020

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From androgen receptor to the general transcription factor TFIIH. Identification of cdk activating kinase (CAK) as an androgen receptor NH(2)-terminal associated coactivator

31 March 2020

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Dysregulation of the peroxisome proliferator-activated receptor target genes by XPD mutations

31 March 2020

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Neurological defects in trichothiodystrophy reveal a coactivator function of TFIIH

31 March 2020

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p62, A TFIIH subunit, directly interacts with thyroid hormone receptor and enhances T3-mediated transcription

31 March 2020

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Selective regulation of vitamin D receptor-responsive genes by TFIIH.

31 March 2020

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Cyclin-dependent kinase 7: at the cross-roads of transcription, DNA repair and cell cycle control?

31 March 2020

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Cyclin-dependent kinases: engines, clocks, and microprocessors

31 March 2020

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Cdk7 is required for full activation of Drosophila heat shock genes and RNA polymerase II phosphorylation in vivo

31 March 2020

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Requirements for Cdk7 in the assembly of Cdk1/cyclin B and activation of Cdk2 revealed by chemical genetics in human cells.

31 March 2020

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Nuclear receptors: integration of multiple signalling pathways through phosphorylation

31 March 2020

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XPD mutations prevent TFIIH-dependent transactivation by nuclear receptors and phosphorylation of RARalpha

31 March 2020

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Vinexin: a novel vinculin-binding protein with multiple SH3 domains enhances actin cytoskeletal organization

31 March 2020

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Vinexin beta interacts with the non-phosphorylated AF-1 domain of retinoid receptor gamma (RARgamma) and represses RARgamma-mediated transcription

31 March 2020

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Ménage-à-trois 1 is critical for the transcriptional function of PPARgamma coactivator 1

31 March 2020

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Peroxisome proliferator-activated receptor-gamma coactivator 1 alpha (PGC-1 alpha): transcriptional coactivator and metabolic regulator

31 March 2020

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MTA1 interacts with MAT1, a cyclin-dependent kinase-activating kinase complex ring finger factor, and regulates estrogen receptor transactivation functions

31 March 2020

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Function and regulation of the Mediator complex

31 March 2020

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Mediator-dependent recruitment of TFIIH modules in preinitiation complex

31 March 2020

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Control of the function of the transcription and repair factor TFIIH by the action of the cochaperone Ydj1.

31 March 2020

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XRCC3 and XPD/ERCC2 single nucleotide polymorphisms and the risk of cancer: a HuGE review

31 March 2020

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ERCC2 Lys751Gln polymorphism is associated with lung cancer among Caucasians

31 March 2020

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TFIIH transcription factor, a target for the Rift Valley hemorrhagic fever virus.

31 March 2020

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Transcriptional regulation of the TFIIH transcription repair components XPB and XPD by the hepatitis B virus x protein in liver cells and transgenic liver tissue

31 March 2020

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Cancer in xeroderma pigmentosum and related disorders of DNA repair

31 March 2020

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Nucleotide excision repair and human syndromes

31 March 2020

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Trichothiodystrophy: update on the sulfur-deficient brittle hair syndromes

31 March 2020

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Trichothiodystrophy view from the molecular basis of DNA repair/transcription factor TFIIH.

31 March 2020

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Xeroderma pigmentosum and related disorders: defects in DNA repair and transcription

31 March 2020

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Both XPD alleles contribute to the phenotype of compound heterozygote xeroderma pigmentosum patients

31 March 2020

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Reduced level of the repair/transcription factor TFIIH in trichothiodystrophy

31 March 2020

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A mouse model for the basal transcription/DNA repair syndrome trichothiodystrophy

31 March 2020

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Trichothiodystrophy, a transcription syndrome

31 March 2020

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Ubiquitin ligase activity of TFIIH and the transcriptional response to DNA damage

31 March 2020

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Transcriptional activators stimulate DNA repair.

31 March 2020

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A DNA repair complex functions as an Oct4/Sox2 coactivator in embryonic stem cells

31 March 2020

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Subunit architecture of general transcription factor TFIIH

31 March 2020

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Electron crystal structure of the transcription factor and DNA repair complex, core TFIIH.

31 March 2020

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Molecular structure of human TFIIH

31 March 2020

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The TFIIH subunit Tfb3 regulates cullin neddylation

31 March 2020

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Nucleotide excision repair in yeast is mediated by sequential assembly of repair factors and not by a pre-assembled repairosome

31 March 2020

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Interaction of a gene-specific transcription factor with the adenovirus major late promoter upstream of the TATA box region.

31 March 2020

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Five intermediate complexes in transcription initiation by RNA polymerase II

31 March 2020

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Controlling nuclear receptors: the circular logic of cofactor cycles

31 March 2020

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A role for ATP and TFIIH in activation of the RNA polymerase II preinitiation complex prior to transcription initiation

31 March 2020

1 reference

12 December 2020

Opening of an RNA polymerase II promoter occurs in two distinct steps and requires the basal transcription factors IIE and IIH.

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12 December 2020

Cockayne syndrome: Review of 140 cases

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12 December 2020

Xeroderma pigmentosum and related disorders: examining the linkage between defective DNA repair and cancer

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12 December 2020

Characterization of a human DNA damage binding protein implicated in xeroderma pigmentosum E

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12 December 2020

CAK, the p34cdc2 activating kinase, contains a protein identical or closely related to p40MO15.

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12 December 2020

Factors involved in specific transcription by mammalian RNA polymerase II. Purification and functional analysis of initiation factors IIB and IIE.

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12 December 2020

Transcription initiated by RNA polymerase II and transcription factors from liver. Structure and action of transcription factors epsilon and tau

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12 December 2020

Purification and characterization of yeast RNA polymerase II transcription factor b.

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12 December 2020

Activation of estrogen receptor alpha by S118 phosphorylation involves a ligand-dependent interaction with TFIIH and participation of CDK7

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12 December 2020

Nucleotide excision repair of DNA with recombinant human proteins: definition of the minimal set of factors, active forms of TFIIH, and modulation by CAK

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12 December 2020

Multiple factors required for accurate initiation of transcription by purified RNA polymerase II.

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12 December 2020

Factors involved in specific transcription by mammalian RNA polymerase II. Identification and characterization of factor IIH

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12 December 2020

Separation and characterization of factors mediating accurate transcription by RNA polymerase II.

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12 December 2020

Purification and interaction properties of the human RNA polymerase B(II) general transcription factor BTF2

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12 December 2020

Distinct functions of the ubiquitin-proteasome pathway influence nucleotide excision repair

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12 December 2020