Gene regulation by nucleosome positioning (Q37787412)

23 August 2017

title

Gene regulation by nucleosome positioning (English)

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regulation of gene expression

23 August 2017

main subject

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20832136

10 July 2024

Alexandre V. Morozov

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20832136

10 July 2024

Lu Bai

1 reference

23 August 2017

language of work or name

English

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National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20832136

10 July 2024

publication date

9 September 2010

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full work available at URL

23 August 2017

https://api.elsevier.com/content/article/PII:S0168952510001678?httpAccept=text/xml

1 reference

Crossref

DOI

https://api.crossref.org/works/10.1016/J.TIG.2010.08.003

https://api.elsevier.com/content/article/PII:S0168952510001678?httpAccept=text/plain

10 July 2024

1 reference

Crossref

DOI

https://api.crossref.org/works/10.1016/J.TIG.2010.08.003

10 July 2024

1 reference

23 August 2017

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23 August 2017

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23 August 2017

page(s)

476-483

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Crystal structure of the nucleosome core particle at 2.8 A resolution

23 August 2017

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10 July 2024

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H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

10 July 2024

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Dynamics of Replication-Independent Histone Turnover in Budding Yeast

10 July 2024

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Histone replacement marks the boundaries of cis-regulatory domains

10 July 2024

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Transcription factors vs nucleosomes: regulation of the PHO5 promoter in yeast

10 July 2024

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Nucleosome-depleted regions in cell-cycle-regulated promoters ensure reliable gene expression in every cell cycle

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10 July 2024

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High nucleosome occupancy is encoded at human regulatory sequences

10 July 2024

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A region of the human HOXD cluster that confers polycomb-group responsiveness

10 July 2024

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Role of nucleosomal occupancy in the epigenetic silencing of the MLH1 CpG island.

10 July 2024

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The conformation dependent hydrolysis of DNA by micrococcal nuclease

10 July 2024

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Sequence specific cleavage of DNA by micrococcal nuclease

10 July 2024

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High sequence specificity of micrococcal nuclease

10 July 2024

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H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

10 July 2024

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High-resolution nucleosome mapping reveals transcription-dependent promoter packaging

10 July 2024

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Chromatin-dependent transcription factor accessibility rather than nucleosome remodeling predominates during global transcriptional restructuring in Saccharomyces cerevisiae

10 July 2024

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Mechanisms that specify promoter nucleosome location and identity

10 July 2024

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A RSC/nucleosome complex determines chromatin architecture and facilitates activator binding

10 July 2024

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Activator control of nucleosome occupancy in activation and repression of transcription

10 July 2024

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Activation of the weakly regulated PHO8 promoter in S. cerevisiae: chromatin transition and binding sites for the positive regulatory protein PHO4

10 July 2024

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Nucleosome structure of the yeast CHA1 promoter: analysis of activation-dependent chromatin remodeling of an RNA-polymerase-II-transcribed gene in TBP and RNA pol II mutants defective in vivo in response to acidic activators.

10 July 2024

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Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters

10 July 2024

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FACT and Asf1 regulate nucleosome dynamics and coactivator binding at the HO promoter

10 July 2024

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Transcriptional coactivator complexes

10 July 2024

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Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes

10 July 2024

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The histone chaperone Asf1 increases the rate of histone eviction at the yeast PHO5 and PHO8 promoters.

10 July 2024

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Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter.

10 July 2024

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Transcription factor-specific requirements for coactivators and their acetyltransferase functions

10 July 2024

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Cell cycle-regulated histone acetylation required for expression of the yeast HO gene

10 July 2024

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Activation of the yeast HO gene by release from multiple negative controls

10 July 2024

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Promoter occupancy is a major determinant of chromatin remodeling enzyme requirements

10 July 2024

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Bypassing the requirements for epigenetic modifications in gene transcription by increasing enhancer strength

10 July 2024

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The Yeast SWI-SNF Complex Facilitates Binding of a Transcriptional Activator to Nucleosomal Sites In Vivo

10 July 2024

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Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions

10 July 2024

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Epigenetic inheritance of an inducibly nucleosome-depleted promoter and its associated transcriptional state in the apparent absence of transcriptional activators

10 July 2024

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Identification and distinct regulation of yeast TATA box-containing genes

10 July 2024

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Facilitated binding of TATA-binding protein to nucleosomal DNA

10 July 2024

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Two strategies for gene regulation by promoter nucleosomes

10 July 2024

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Transcription initiation in vivo without classical transactivators: DNA kinks flanking the core promoter of the housekeeping yeast adenylate kinase gene, AKY2, position nucleosomes and constitutively activate transcription

10 July 2024

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A nucleosome-free dG-dC-rich sequence element promotes constitutive transcription of the essential yeast RIO1 gene

10 July 2024

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Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection.

10 July 2024

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The histone octamer is invisible when NF-kappaB binds to the nucleosome

10 July 2024

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Rapid spontaneous accessibility of nucleosomal DNA.

10 July 2024

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Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation

10 July 2024

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Nucleosome disruption by transcription factor binding in yeast.

10 July 2024

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Chromatin decouples promoter threshold from dynamic range

10 July 2024

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Intrinsic variability of gene expression encoded in nucleosome positioning sequences.

10 July 2024

1 reference

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The amino-terminal tails of the core histones and the translational position of the TATA box determine TBP/TFIIA association with nucleosomal DNA.

10 July 2024

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2010.08.003

Redundancy of chromatin remodeling pathways for the induction of the yeast PHO5 promoter in vivo

10 July 2024

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2010.08.003

Exposing the core promoter is sufficient to activate transcription and alter coactivator requirement at RNR3.

10 July 2024

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2010.08.003

Artificially recruited TATA-binding protein fails to remodel chromatin and does not activate three promoters that require chromatin remodeling

10 July 2024

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2010.08.003

NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly

10 July 2024

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https://api.crossref.org/works/10.1016/J.TIG.2010.08.003

Nucleosome positioning and gene regulation: advances through genomics

10 July 2024

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https://api.crossref.org/works/10.1016/J.TIG.2010.08.003

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

10 July 2024

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Rapid, transcription-independent loss of nucleosomes over a large chromatin domain at Hsp70 loci

10 July 2024

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The role of chromatin during transcription

10 July 2024

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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

10 July 2024

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Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila

10 July 2024

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Using DNA mechanics to predict in vitro nucleosome positions and formation energies.

10 July 2024

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https://api.crossref.org/works/10.1016/J.TIG.2010.08.003

Nucleosome positioning signals in genomic DNA

10 July 2024

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Sequence-dependent nucleosome positioning

10 July 2024

1 reference

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G+C content dominates intrinsic nucleosome occupancy

10 July 2024

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Nucleosome positioning--what do we really know?

10 July 2024

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https://api.crossref.org/works/10.1016/J.TIG.2010.08.003

A genomic code for nucleosome positioning

10 July 2024

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A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

10 July 2024

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https://api.crossref.org/works/10.1016/J.TIG.2010.08.003

Statistical positioning of nucleosomes by specific protein-binding to an upstream activating sequence in yeast

10 July 2024

1 reference

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Active PHO5 chromatin encompasses variable numbers of nucleosomes at individual promoters.

10 July 2024

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2010.08.003

Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences

10 July 2024

1 reference

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Bidirectional promoters generate pervasive transcription in yeast

10 July 2024

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10 July 2024

Identifiers

DOI

1 reference

release_ivshkbhdzzabnk4sdcsg3myyqi

23 August 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/ivshkbhdzzabnk4sdcsg3myyqi

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference